This is an appendix to: Quantum Biology - 11
52) Codon Usage Bias:
About: Influenza B virus (B/Lee/1940) segment 5, complete sequence (1841bp)
VERSION: NC_002208.1
CODONS & LOCATIONS:
GCT: 27,172,346,394,415,855,920,940,1005,1056,1075,1138,
1223,1231,1324,1354,1371,1480,1495,1509,1603,1762,
1827
GCT count: 23
GCC: 159,177,460,557,742,817,874,883,927,1009,1132,1234,
1284,1384,1451
GCC count: 15
GCA: 2,8,13,34,139,163,182,227,388,418,512,749,784,838,
844,930,982,1016,1046,1067,1153,1189,1261,1271,1294,
1304,1332,1351,1448,1462,1487,1491,1537,1582,1674,
1711,1742
GCA count: 37
GCG: 290,1042
GCG count: 2
CGT: 1220,1521,1531,1780
CGT count: 4
CGC: (0)
CGA: 31,99,190,196,237,672,823,1104,1275,1731
CGA count: 10
CGG: 90,126,243,960,1227,1268
CGG count: 6
AGA: 111,114,145,210,260,276,284,287,332,401,431,449,463,
474,486,492,503,524,532,582,585,605,665,688,760,763,
835,850,862,878,893,990,993,1012,1030,1107,1174,1182,
1194,1242,1249,1288,1338,1396,1422,1467,1471,1501,
1504,1586,1616,1635,1661,1752
AGA count: 54
AGG: 214,247,370,454,477,482,507,695,706,768,792,795,831,
967,975,1092,1307,1328,1341,1404,1425,1428,1527,1548,
1702,1715
AGG count: 26
AAT: 39,51,57,96,150,199,252,300,320,355,373,378,385,405,
440,457,489,567,597,640,729,904,1080,1099,1147,1199,
1301,1344,1389,1408,1440,1515,1552,1563,1570,1578,
1600,1620,1629,1651,1668,1687,1749,1811,1815,1824
AAT count: 46
AAC: 44,64,93,105,129,219,234,263,267,273,311,328,435,499,
543,594,774,801,913,970,999,1088,1205,1590,1642
AAC count: 25
GAT: 70,279,336,358,424,466,535,538,622,651,811,949,957,
978,1359,1534,1540,1566,1573,1723,1787
GAT count: 21
GAC: 76,120,350,361,427,635,656,698,713,718,847,865,985,
1186,1392,1677,1705,1726,1767
GAC count: 19
TGT: 22,675,679,780,1026,1038,1161,1217,1253,1317,1455,
1770,1795,1832
TGT count: 14
TGC: 924
TGC count: 1
CAA: 54,156,186,224,256,297,342,382,391,445,471,685,692,
789,870,934,952,1368,1545,1560,1638
CAA count: 21
CAG: 132,630,732,1375,1593,1775
CAG count: 6
GAA: 5,48,367,591,669,702,746,814,889,909,1129,1411,1518
GAA count: 13
GAG: 618
GAG count: 1
GGT: 303,306,316,339,528,588,625,1020,1053,1119,1124,1435
GGT count: 12
GGC: (0)
GGA: 1597,1613
GGA count: 2
GGG: 136,615,1179,1347,1699,1792
GGG count: 6
CAT: 153,203,546,612,645,725,1062,1167,1365,1608,1656,1680
CAT count: 12
CAC: 496,609,662,752,1157,1755
CAC count: 6
ATT: 73,411,659,1095,1170,1209,1278,1477,1718,1736,1806
ATT count: 11
ATC: 820,1257,1632
ATC count: 3
ATA: 521,1110,1745
ATA count: 3
CTT: 169,516,552,573,722,737,898,1141,1212,1692,1695,1803
CTT count: 12
CTC: 206,1035,1085,1113,1202
CTC count: 5
CTA: 294,324,549,943,1246,1264,1297,1483,1555,1837
CTA count: 10
CTG: 859,901,1380,1400
CTG count: 4
TTA: 577,805,827,1071,1798
TTA count: 5
TTG: 710,1783
TTG count: 2
AAA: 1645,1739,1820
AAA count: 3
AAG: 916,937,963,1049,1416,1443
AAG count: 6
ATG: 67,364,841,1135,1150,1238,1759
ATG count: 7
TTT: 16,1311,1459,1624
TTT count: 4
TTC: 682,1164,1664
TTC count: 3
CCT: 408,996,1474
CCT count: 3
CCC: 270,757,1320,1683
CCC count: 4
CCA: 1314
CCA count: 1
CCG: (0)
TCT: 19,1002,1432
TCT count: 3
TCC: 61,123,1059
TCC count: 3
TCA: 1291
TCA count: 1
TCG: (0)
AGT: 1023,1335
AGT count: 2
AGC: (0)
ACT: 117,421
ACT count: 2
ACC: 108,142,166,193
ACC count: 4
ACA: 602,1708
ACA count: 2
ACG: (0)
TGG: 398,777,798,1419
TGG count: 4
TAT: 240,648,886,1116,1144
TAT count: 5
TAC: 87,570,771
TAC count: 3
GTT: 946
GTT count: 1
GTC: 1362,1512,1648
GTC count: 3
GTA: 1498
GTA count: 1
GTG: 230,808
GTG count: 2
TAA: 102,1281,1671
TAA count: 3
TAG: (0)
TGA: 1524
TGA count: 1
53) Codon Usage Bias:
About: Rotavirus C segment 2, complete sequence (2736bp)
VERSION: NC_007546.1
CODONS & LOCATIONS:
GCT: 2,156,196,394,498,517,594,775,1018,1033,1072,1096,
1117,1162,1165,1171,1199,1225,1324,1363,1423,1438,
1582,1603,1669,1723,1968,2008,2083,2157,2234,2284,
2530,2571,2650,2734
GCT count: 36
GCC: 353,579,919,1290,1596,1780,1927,2147,2178,2640
GCC count: 10
GCA: 44,56,176,607,628,634,763,822,859,916,1080,1099,1150,
1168,1261,1329,1336,1377,1383,1393,1431,1547,1678,
1743,1896,1915,1930,2296,2398,2402,2518,2541,2668,
2679
GCA count: 34
GCG: 1180,1642,2332
GCG count: 3
CGT: 29,186,598,645,789,900,1026,1771,1841,1971,2088,2140,
2190
CGT count: 13
CGC: (0)
CGA: 209,476,582,1416,1522,2050,2124,2291,2469,2717
CGA count: 10
CGG: 1124,1502,1832,2202,2271,2305,2664
CGG count: 7
AGA: 10,35,81,87,99,117,135,147,150,168,171,183,201,230,
246,263,293,309,312,418,464,481,504,535,570,648,663,
687,692,699,712,715,733,750,937,1036,1039,1089,1113,
1216,1230,1296,1309,1444,1453,1492,1496,1617,1627,
1639,1663,1690,1820,1936,1955,1978,2015,2025,2030,
2038,2044,2056,2074,2077,2080,2095,2136,2196,2256,
2264,2267,2412,2460,2533,2574,2671,2682
AGA count: 77
AGG: 20,52,125,383,702,850,962,967,1130,1368,1405,1506,
1752,2150,2328,2416
AGG count: 16
AAT: 26,61,64,95,108,206,214,220,256,277,306,315,326,343,
378,386,406,470,494,539,562,576,591,642,666,728,741,
757,767,796,805,809,831,863,878,895,907,931,992,996,
1083,1092,1136,1142,1155,1174,1187,1194,1221,1278,
1313,1341,1345,1380,1428,1441,1457,1474,1484,1512,
1531,1572,1660,1674,1695,1705,1738,1800,1809,1816,
1873,1885,1891,1899,1906,1920,1923,1942,1959,2059,
2107,2121,2175,2212,2217,2221,2230,2241,2244,2248,
2259,2316,2361,2439,2444,2451,2455,2488,2491,2495,
2568,2602,2615,2647,2691
AAT count: 105
AAC: 49,68,76,92,112,130,192,270,372,399,616,677,800,836,
843,853,873,927,957,1011,1056,1061,1109,1239,1246,
1558,1569,1649,1686,1755,1791,1835,1867,1952,2047,
2130,2184,2208,2350,2435,2505,2508,2511,2555,2581,
2625,2685,2725
AAC count: 48
GAT: 39,235,349,508,523,601,613,672,793,867,889,913,974,
982,986,1003,1021,1051,1069,1299,1509,1534,1551,1681,
1803,1903,1965,2005,2308,2365,2548,2605,2643,2694
GAT count: 34
GAC: 102,696,753,1281,1542,2224,2275,2383,2419,2499
GAC count: 10
TGT: 360,413,548,722,942,1253,1267,1271,1471,1632,1726,
1764,1983,2033,2154,2199,2343,2393,2406,2592,2697,
2712,2730
TGT count: 23
TGC: (0)
CAA: 226,389,501,1007,1390,1636,1777,1988,2426
CAA count: 9
CAG: 14,281,431,530,826,1202,1823,2066,2357,2390,2561,2633
CAG count: 12
GAA: 144,631,653,1075,1177,1399,1768,2071,2325
GAA count: 9
GAG: (0)
GGT: 240,460,485,520,637,1065,1396,1460,1489,1911,2595
GGT count: 11
GGC: (0)
GGA: 491,573
GGA count: 2
GGG: (0)
CAT: 252,330,335,338,357,410,588,620,736,784,839,886,950,
979,1015,1102,1236,1316,1412,1465,1468,1516,1539,1589,
1607,1715,1838,2319,2339,2354,2448,2465,2485,2619,
2707
CAT count: 35
CAC: 189,551,947,1139,1256,1478,2021,2171,2628
CAC count: 9
ATT: 217,273,423,443,488,623,709,778,856,910,970,1120,1233,
1274,1285,1332,1354,1419,1450,1563,1828,1870,2062,
2091,2098,2101,2117,2251,2279,2322,2335,2422,2474,
2477,2544,2558,2586,2610,2674
ATT count: 39
ATC: 266,683,744,1209,1293,1358,1610,1656,1719,1949,2133,
2163,2373,2565
ATC count: 14
ATA: 259,296,402,447,705,719,882,1045,1250,1701,1709,1729,
1774,1995,2143,2168,2287,2551,2598,2688,2700
ATA count: 21
CTT: 543,813,817,954,1305,1351,1613,1759,1784,1796,1846,
1879,2302,2657
CTT count: 14
CTC: 428,1242,1409,1592,1787,1812,1860,2312,2537,2721
CTC count: 10
CTA: 140,659,781,1519,1585,1712,2012
CTA count: 7
CTG: 290,725
CTG count: 2
TTA: 122,164,223,287,320,434,511,585,1105,1147,1184,1190,
1372,1386,1526,1576,1645,1733,1747,1945,2041,2053,
2187,2299,2431
TTA count: 25
TTG: 17,302,989,1133,1939
TTG count: 5
AAA: 6,71,84,323,364,437,467,1086,2127,2377,2409
AAA count: 11
AAG: 299,367
AAG count: 2
ATG: 179,604,999,2104,2660
ATG count: 5
TTT: 566,669,903,922,1042,1205,1302,1599,1652,1849,1876,
2181,2369,2589
TTT count: 14
TTC: 1029,1481,1566,2237,2636
TTC count: 5
CCT: 514,1048
CCT count: 2
CCC: 771
CCC count: 1
CCA: 892,2387
CCA count: 2
CCG: (0)
TCT: 1447,2654
TCT count: 2
TCC: 870
TCC count: 1
TCA: 32,934,1264,2578
TCA count: 4
TCG: (0)
AGT: 159,249,656,1159,1320,1434,1554,1698,1864,1991,2481
AGT count: 11
AGC: (0)
ACT: 346,527,760,2227,2347
ACT count: 5
ACC: 1213,1348,1975,2502
ACC count: 4
ACA: 23,847,1666,1882,2515
ACA count: 5
ACG: (0)
TGG: 747
TGG count: 1
TAT: 105,473,680,1888,1933,2704
TAT count: 6
TAC: 1127,2018
TAC count: 2
GTT: 440,1806,1962,2160,2205
GTT count: 5
GTC: (0)
GTA: 2521
GTA count: 1
GTG: 610,1402,1579,2380
GTG count: 4
TAA: 153,243,1499,2622
TAA count: 4
TAG: 284
TAG count: 1
TGA: 375,450,2193
TGA count: 3
54) Codon Usage Bias:
About: Human immunodeficiency virus 1, complete genome (9181bp)
VERSION: NC_001802.1
CODONS & LOCATIONS:
GCT: 35,43,62,79,92,226,247,251,321,455,502,524,633,693,
822,896,960,1260,1356,1425,1455,1570,1626,1720,1862,
2009,2539,2707,2830,2847,2995,3431,3548,3755,3842,
3891,3907,4145,4280,4495,4689,4770,4941,5167,5179,
5192,5218,5226,5305,5437,5450,5468,5548,5575,5830,
5858,5942,6240,6339,6431,6547,6611,6631,6806,7123,
7126,7319,7378,7435,7442,7495,7514,7543,7563,7589,
7604,7689,7804,7842,7868,8070,8079,8201,8208,8212,
8237,8276,8285,8319,8335,8409,8490,8499,8502,8513,
8592,8639,8698,8767,8774,8830,8933,8959,8970,8974,
8991,9066,9069,9120,9128,9147,9164,9177
GCT count: 113
GCC: 27,68,83,108,186,298,401,481,721,771,829,870,924,998,
1012,1168,1251,1405,1438,1539,1554,1649,1667,1697,
1704,1766,1912,2103,2134,2148,2167,2248,2279,2602,
2821,2833,3099,3127,3173,3268,3317,3797,3859,3887,
3920,4013,4099,4157,4160,4555,4723,4953,4975,5066,
5075,5114,5131,5143,5279,5382,5403,5427,5477,5500,
5978,5987,6114,6121,6380,6403,6425,6526,7076,7367,
7391,7594,7957,8055,8061,8144,8219,8225,8292,8381,
8414,8508,8605,8732,8789,8808,8848,8902,8905,8925,
9016,9042,9076,9112,9153,9168
GCC count: 100
GCA: 178,237,261,266,444,448,468,582,599,656,678,683,687,
690,709,740,755,795,855,921,929,963,980,989,993,1005,
1044,1177,1256,1341,1380,1413,1431,1469,1477,1522,
1532,1549,1687,1760,1816,1849,1880,2082,2192,2387,
2480,2567,2583,2683,2686,2894,2926,2957,2990,3005,
3074,3088,3094,3158,3206,3211,3231,3313,3404,3428,
3458,3536,3553,3599,3617,3695,3707,3836,3872,3925,
3958,4001,4031,4046,4057,4088,4128,4131,4183,4298,
4310,4361,4388,4464,4490,4517,4568,4601,4619,4802,
4823,4870,4893,4995,5031,5037,5040,5233,5267,5296,
5341,5370,5412,5507,5519,5589,5610,5629,5638,5650,
5662,5755,5768,5794,5823,5912,5933,5948,6082,6162,
6255,6261,6277,6290,6498,6558,6566,6716,6755,6776,
6810,6856,6889,7023,7051,7067,7152,7259,7271,7288,
7304,7343,7346,7353,7364,7417,7420,7423,7453,7459,
7468,7485,7492,7502,7581,7717,7726,7769,7897,8030,
8130,8231,8350,8418,8421,8436,8439,8466,8479,8487,
8520,8589,8714,8852,8910,8936,9055,9063
GCA count: 184
GCG: 206,257,273,280,283,315,342,348,361,1311,1353,4172,
5350,5529,5538,6201,6440,8050,9011,9022,9038
GCG count: 21
CGT: 111,1828,6465,6692,7917,8921
CGT count: 6
CGC: (0)
CGA: 189,233,378,462,1820,5086,5334,5358,5542,7165,7647,
7941,7951,7960,8009,8044,8106,8406,8445,8928,8967
CGA count: 21
CGG: 393,1230,3561,4141,4149,4445,6603,7383,8020,8869,8941
CGG count: 11
AGA: 14,19,136,147,220,269,324,330,334,345,368,374,412,
458,488,497,507,541,551,554,561,620,638,653,670,783,
812,815,833,863,881,941,1015,1020,1112,1125,1158,1191,
1215,1226,1248,1289,1319,1327,1364,1367,1416,1473,
1494,1498,1526,1542,1607,1618,1642,1684,1694,1712,
1715,1736,1756,1772,1839,1870,1897,1900,1919,1967,
1980,1990,2057,2073,2112,2176,2179,2200,2212,2286,
2293,2309,2320,2327,2340,2350,2400,2455,2461,2508,
2522,2599,2609,2623,2674,2690,2711,2746,2760,2764,
2836,2842,2868,2901,2945,2965,2983,2986,2998,3014,
3018,3028,3064,3084,3124,3161,3202,3226,3249,3304,
3382,3388,3421,3441,3482,3519,3522,3568,3586,3625,
3640,3739,3781,3790,3802,3813,3833,3877,3916,3937,
3964,3979,4027,4094,4228,4243,4251,4271,4293,4334,
4370,4378,4393,4408,4531,4559,4562,4572,4596,4625,
4641,4707,4734,4745,4773,4811,4815,4847,4861,4880,
4934,4947,5059,5096,5103,5119,5122,5136,5164,5173,
5184,5198,5288,5322,5362,5367,5373,5388,5395,5400,
5525,5533,5545,5555,5564,5691,5710,5716,5724,5740,
5748,5752,5760,5774,5784,5804,5816,5863,5938,5959,
6001,6016,6040,6073,6078,6174,6206,6219,6226,6266,
6283,6322,6462,6571,6574,6587,6646,6662,6680,6686,
6699,6713,6749,6773,6801,6818,6877,7100,7136,7175,
7189,7208,7275,7280,7292,7301,7394,7505,7523,7632,
7667,7711,7729,7734,7744,7759,7856,7923,7969,7972,
7975,7984,7988,7994,8000,8084,8193,8248,8260,8282,
8303,8306,8312,8341,8397,8403,8516,8525,8571,8597,
8618,8655,8658,8663,8742,8792,8797,8801,8804,8819,
8872,8876,8885,8953,9048,9099,9104
AGA count: 295
AGG: 50,194,211,276,327,404,545,606,628,701,715,751,866,
955,1029,1066,1076,1109,1196,1204,1267,1270,1387,1394,
1397,1485,1529,1560,1567,1588,1592,1637,1660,1670,
1725,1777,1803,1843,1857,1876,1915,1939,1951,2014,
2029,2137,2223,2227,2371,2468,2515,2547,2557,2662,
2680,2726,2911,3148,3167,3279,3400,3437,3451,3604,
3678,3684,3715,3724,3764,3913,3949,3982,4054,4154,
4219,4261,4266,4339,4457,4483,4507,4513,4580,4629,
4635,4682,4692,4763,4808,4834,4854,4961,4980,5008,
5012,5128,5210,5230,5418,5698,5728,5781,5907,6087,
6223,6273,6390,6478,6703,6709,6730,6739,6865,6868,
6907,6979,6997,7060,7120,7183,7186,7196,7252,7315,
7439,7449,7533,7837,7849,7963,7978,8184,8241,8252,
8272,8316,8327,8391,8427,8530,8533,8536,8560,8623,
8636,8729,8735,8816,8892,8980,9005,9135
AGG count: 152
AAT: 73,170,304,389,474,512,573,726,758,792,932,951,967,
1073,1089,1092,1115,1133,1146,1151,1278,1308,1370,
1449,1463,1515,1545,1579,1601,1629,1674,1834,1903,
1933,1945,1993,2050,2060,2090,2127,2140,2163,2185,
2203,2233,2242,2255,2264,2304,2313,2336,2367,2374,
2406,2504,2534,2593,2618,2640,2677,2808,2858,2883,
2888,2971,3070,3079,3102,3115,3137,3153,3182,3195,
3217,3238,3258,3347,3366,3447,3515,3594,3607,3636,
3650,3655,3670,3718,3728,3744,3760,3787,3816,3827,
3880,3900,3952,4083,4111,4124,4177,4188,4195,4205,
4238,4255,4306,4325,4384,4423,4432,4439,4469,4525,
4535,4781,4904,4987,5023,5045,5150,5154,5284,5345,
5376,5446,5607,5622,5655,5658,5685,5703,5721,5733,
5745,5787,5868,5969,6032,6044,6062,6094,6132,6185,
6191,6214,6248,6313,6319,6326,6406,6450,6455,6458,
6470,6491,6507,6520,6554,6583,6596,6608,6622,6649,
6653,6674,6727,6736,6743,6780,6785,6813,6825,6833,
6836,6844,6847,6880,6899,6912,6926,6944,6959,6986,
7009,7027,7036,7096,7112,7148,7157,7202,7215,7240,
7312,7372,7398,7430,7601,7616,7620,7640,7672,7679,
7693,7705,7755,7764,7781,7799,7828,7966,8151,8162,
8216,8496,8576,8642,8811,9158
AAT count: 219
AAC: 46,54,132,216,430,491,529,660,744,888,900,1024,1049,
1069,1207,1292,1314,1445,1488,1700,1742,1745,1780,
1793,1926,2045,2160,2331,2344,2413,2613,2715,2754,
2793,2937,2950,2962,2980,3011,3145,3192,3199,3220,
3264,3283,3292,3409,3434,3502,3511,3575,3583,3621,
3732,3807,3854,4051,4063,4108,4284,4402,4419,4593,
4663,4784,4787,4888,4900,5004,5048,5089,5109,5248,
5301,5433,5493,6008,6050,6136,6236,6359,6475,6538,
6543,6616,6635,6668,6671,6764,6788,6798,6822,6841,
6886,6931,6936,6989,7032,7132,7245,7427,7539,7572,
7629,7676,7721,7740,7790,7795,7936,8118,8187,8458,
8718,8823,9131,9139
AAC count: 117
GAT: 139,839,1082,1130,1141,1283,1373,1466,1769,1883,1886,
1936,1976,2144,2215,2423,2432,2518,2550,2648,2651,
2782,2804,2914,3185,3325,3462,3557,3564,3848,3896,
4020,4274,4345,4583,4607,4610,4696,4767,4864,5100,
5258,5737,5839,5845,5848,5954,6107,6167,6179,6211,
6229,6308,6329,7139,7168,7552,7654,7831,7902,8098,
8110,8372,8377,8424,8673,8681,8709,8761,8858,8862
GAT count: 71
GAC: 123,197,241,310,520,696,913,944,1038,1085,1185,1218,
1286,1348,1376,1621,1690,1739,2001,2068,2173,2587,
2669,2733,2812,2851,2861,3053,3106,3301,3506,3930,
4121,4460,4541,4818,4896,4923,4999,5093,5158,6037,
6065,6349,6872,7004,7092,7199,7375,7664,7947,7991,
7997,8087,8127,8245,8448,8579,8629,8753,8865,8898,
8962,8983,8997,9026
GAC count: 66
TGT: 103,115,118,163,484,594,847,1162,1223,1297,1323,1383,
1502,1509,1518,1611,1783,1997,2041,2064,2116,2207,
2655,2659,2721,2854,2933,3045,3343,3418,3466,3493,
3865,3941,3968,4009,4163,4613,4672,4676,4912,4926,
4983,5081,5331,5440,5455,5464,5485,5604,5670,5799,
5852,5871,5899,5930,5990,6054,6125,6146,6356,6383,
6422,6485,6592,6643,6656,6721,6761,6883,6902,6923,
6939,7047,7071,7103,7323,7404,7464,7776,8058,8101,
8113,8279,8369,8387,8505,8677,8833,8843,8881,9079
TGT count: 92
TGC: (0)
CAA: 96,603,641,918,1201,1305,1491,1929,1960,2151,2238,
2576,2694,2749,2953,3060,3275,3485,3533,3614,3629,
3712,4180,4211,4415,4428,4436,4875,4992,5053,5572,
5585,5713,6110,6258,6387,6752,7267,7489,7686,8359,
8473,8585,8652,8694,8771
CAA count: 46
CAG: 160,352,577,768,904,985,1009,1105,1890,1970,2019,2121,
2271,2296,2409,2445,2528,3033,3377,3665,3751,3823,
4277,4357,5559,5763,5880,6097,6366,6377,6501,6892,
7087,7388,7476,7499,7954,8171,8548,8782
CAG count: 40
GAA: 167,202,254,384,409,818,1033,1428,1585,1604,1663,2219,
2230,2252,2360,2554,3008,3142,3246,3385,4034,4367,
4480,4504,4590,4649,4685,4719,5189,5276,5409,6058,
6280,7054,7295,7350,7520,7569,8017,8141,8324,8394,
8454
GAA count: 43
GAG: 88,292,318,1390,1906,3042,3332,3338,3527,4837,5271,
6970,7160,7612,7658,8179,9008,9033,9173
GAG count: 19
GGT: 1,10,129,289,339,761,800,1301,1733,2078,2391,2429,
2786,3170,3297,3372,3700,3997,4167,4353,4604,4699,
4778,4797,4830,5675,5811,5875,5893,5962,6028,6070,
6269,6434,6577,6954,7142,7145,7285,7332,7409,7559,
7785,7809,7846,8136,8157,8346,8356,8541,8738,8764,
9086,9095
GGT count: 54
GGC: 183,7361
GGC count: 2
GGA: 32,223,452,1576,1763,1923,2054,2880,3289,4060,4091,
5140,5176,5379,5522,5904,6830,7340,8041,8433,8463,
8633,9117
GGA count: 23
GGG: 364,908,970,1846,1942,2730,3091,3243,3425,4342,4349,
4364,5255,5328,5808,5820,7309,7482,7549,7944,8133,
8626,8994,9030
GGG count: 24
CAT: 532,565,765,893,947,1460,1987,2098,2259,2381,2488,
2626,2644,2772,2798,3038,3057,3271,3394,3610,3974,
4115,4318,4381,4396,4576,4645,4668,4710,4728,4754,
4844,4908,4967,5201,5222,5237,5315,5337,5473,5490,
5551,5569,5679,5688,5827,5966,5984,6370,6412,6416,
6515,6619,6639,6758,7020,7084,7107,7248,7576,7825,
7911,8005,8296,8916
CAT count: 65
CAC: 58,623,705,778,877,1096,1264,1360,1535,1596,1708,1807,
1831,2037,2511,2544,2562,2740,2976,3176,3223,3496,
3591,4138,4322,4473,4713,4759,5147,5917,5920,5998,
6012,6141,7012,7264,7585,7643,7697,7908,7928,8075,
8552,8646,8688,8723,8749,8838,9143
CAC count: 49
ATT: 356,371,1002,1332,1480,1867,1894,2023,2108,2170,2275,
2572,2929,3048,3130,3309,3539,3775,4040,4134,4246,
4315,4411,4452,4638,4792,4915,4958,5213,5291,5325,
5706,5886,5926,6025,6443,6767,7115,7129,7445,7747,
7750,7819,7822,7905,8154,8175,8288,8330
ATT count: 49
ATC: 494,548,712,747,860,1101,1786,2633,2637,2665,2718,
2757,3111,3120,3543,3690,3819,3992,4231,4287,5015,
5240,5312,5790,6251,6394,6535,6689,6695,6859,7508,
7536,7714,8023,8036,8469,8667,8746
ATC count: 38
ATA: 433,569,615,735,774,1041,1165,1188,1408,2004,2282,
2475,2825,2864,3578,4023,4373,4544,4737,4867,4944,
5617,5632,5665,5694,6090,6286,6342,7412,7859,7880,
8196,8228,8309,8338,8482,9059
ATA count: 37
CTT: 152,537,558,787,1062,1211,1680,1789,1811,2085,2353,
2452,2464,2596,2777,2942,3067,3358,3412,4076,4919,
5027,5071,5262,5834,6243,6305,6397,6792,6850,6951,
6966,7171,7328,7336,7702,7874,8026,8033,8065,8095,
8566,8601,8609,8670,8702,8756,8948
CTT count: 48
CTC: 4,38,144,173,229,588,1243,1753,1800,2268,2769,3252,
3354,4499,4841,4937,5511,5579,6862,7016,7080,7472,
7623,7931,8147,8165,8557,9045,9089,9123
CTC count: 30
CTA: 1054,1171,1655,1853,2034,2301,2493,3023,3255,3415,
3444,3471,4201,5019,5034,5514,6333,6446,6563,6919,
7356,7529,8168,8684
CTA count: 24
CTG: 23,478,516,1137,1182,1615,1646,1729,2356,2420,3002,
3322,4885,5406,6975,6993,7179,7511,7566,7651,8123,
8451,9083,9108
CTG count: 24
TTA: 155,396,426,885,936,1335,1956,2157,2195,2484,2736,
2873,2905,3261,3530,3644,4079,4290,4329,4656,4703,
4972,5251,5353,5503,5641,6101,6150,6155,6551,7853,
7893,8012,8090,8205,8256,8582,8613
TTA count: 38
TTG: 1344,1422,4191,4477,4827,5974,6170,7555,7597,7609,
7636,8785
TTG count: 12
AAA: 76,301,415,663,673,803,1274,1338,1563,2131,2182,2188,
2289,2395,2403,2590,2839,2918,3134,3214,3454,3488,
3673,3681,3767,3910,3985,4105,4547,4565,4857,5056,
5063,5458,5496,5945,6118,6232,6683,6733,7063,7237,
7298,8362,9161
AAA count: 45
AAG: 1441,1506,2154,2471,2923,3735,3794,3933,4652,4950,
5421,5461,5480,5594,6158,6352,7000
AAG count: 17
ATG: 440,1079,1434,2790,3164,3286,3810,3839,3955,4235,4587,
4632,4850,5244,5771,5889,6746,7193,7737,8400
ATG count: 20
TTT: 307,850,1632,1677,1909,2093,2323,2605,3778,3851,4442,
4449,4929,5170,5204,5309,5318,6047,6293,6296,6437,
6895,6915,7863,8544,8895,8913,8986,9000,9072
TTT count: 30
TTC: 465,825,1233,1512,1652,1796,2364,2448,4005,4679,4742,
6599,7920
TTC count: 13
CCT: 732,1557,1825,2801,3329,3499,5207,5392,5614,6363,7546,
8300,8706,9052
CCT count: 14
CCC: 843,874,1401,1749,2384,2908,3351,4208,6004,6665
CCC count: 10
CCA: 1174,2378,3704,4043,4487,4731,5125,6336,6482,8827
CCA count: 10
CCG: 6428
CCG count: 1
TCT: 7,126,3687,5883,5923,7479,7877,8047,8442,9092
TCT count: 10
TCC: 3946,4198,5415,6409,8649
TCC count: 5
TCA: 718,1452,2347,3904,4216,5424,6495,6983
TCA count: 8
TCG: 244
TCG count: 1
AGT: 437,666,806,809,836,1154,1963,2026,2317,2416,2579,
2629,2815,2897,2968,3235,3361,3397,3571,3632,3748,
3845,3868,3883,3988,4016,4102,4222,4225,4522,4538,
4552,4622,4748,5385,5598,5625,5646,5682,5855,6019,
6022,6194,6197,6345,6529,6532,6580,6625,6770,6947,
6962,7057,7211,7234,7255,7772,7834,8263,8266,8353,
8777,8944
AGT count: 63
AGC: 4066
AGC count: 1
ACT: 286,1984,3179,3772,3961,4118,5161,6182,8956
ACT count: 9
ACC: 585,1059,2743,3391,3862,5443,5896,5995,6188,6316,6706,
8493,8726
ACC count: 13
ACA: 2818,3971,4303,4399,4528,4751,4964,5601,5981,6374,
6488,6512,6628,6659,6677,7456,7683,8222,8269,8691,
8977
ACA count: 21
ACG: (0)
TGG: 381,1948,2245,2877,2891,3335,3721,3784,3830,5106,6104,
7205,7626,7661,7981,8855,8889,9019
TGG count: 18
TAT: 591,1973,2525,3369,4258,4716,5582,5951,6419,7401,7914
TAT count: 11
TAC: 295,729,1873,2531,4805,6504,6724,7526,8384,8563
TAC count: 10
GTT: 471,1419,1573,4037,5195,5842
GTT count: 6
GTC: 3647
GTC count: 1
GTA: 99,3188,4659,5635,6128,7871,8234,8365,8476
GTA count: 9
GTG: 1582,2426,4616,5777,7517,7883,8430
GTG count: 7
TAA: 65,2124,4405,5430,6795,6853,8190,9150
TAA count: 8
TAG: 5078,6523
TAG count: 2
TGA: 2458,4510,6400,7708
TGA count: 4
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