Tuesday, September 15, 2020

On The Origin of the Genes of Viruses - 15

A culture of mania
I. In The Rear View Mirror

I thought I would interrupt the series about the home of Covid-19 (On The Origin Of The Home Of COVID-19, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17) to add a post to an old Dredd Blog series.

It is a series that has up until now dealt with some of the perplexing questions that scientists wonder about concerning how viruses and their genes came into existence in the first place (The Uncertain Gene - 2, On The Origin of the Genes of Viruses).

Now that genetics has become part of the saga, the "genes" part of a virus genome expressed by virologists consists of an arrangement of "bases" ("ACGT") in various sequences ("CATG", "TCGA", "ATGC", etc.) which result in a different viral "look and feel" ... and behavior.

II. Parts Are Parts
Viruses are not living carbon-based life forms like cells that can reproduce themselves.

No, instead they are like other machines in that they require carbon based life forms to reproduce them.

They cannot reproduce themselves; they must be reproduced by biotic, carbon-based life forms (cells).

They, like the other billions of micro-machines in the biotic realm, are abiotic (Weekend Rebel Science Excursion - 27).

Machines are composed of parts (List of auto parts, Spare part, Parts book, List of bicycle parts), thus the virus "genome" is like a parts list.

When parts are combined they may become "equipment" and comprise an equipment list (Master Minimum Equipment List).

So, combinations of virus parts like the "gene" can be compared to equipment that has special functions (carburetor, transmission, axles, wheels, and the like).

Using the word "gene" is a hangover from a couple of hundred years ago when the science was absent of the concept of abiology, and was of the notion that viruses and DNA were alive, were biotic.

An abundance of the viral parts, comprising large parts lists, have been found on the surface of biological cells:

"Typically, the nuclear genome encoded RNAs (ngRNA) are not expected to be present on the surface of eukaryotic cells with intact cell membranes ... [except for 'leakage'] To confirm that the Surface-FISH signals are not a result of RNA leakage from damaged cell membranes, we combined Malat1 Surface-FISH with a transmission-through-dye (TTD) microscopic analysis, where only live cells with intact membranes are fluorescently labeled ... signals appeared on cells with perfectly intact membranes ... [thus, their techniques] suggest the presence of specific nuclear-encoded transcripts on the surface of intact live cells.
(RNA on Cell Surface, emphasis added). That paper is about parts just laying around on the surface of a cell like parts in a junk yard.

But again, viruses are like machines in another aspect, that is, they can modify other machines.

That change, to a certain degree, is automated:
"Genetic instability of microorganisms is an inherent property allowing rapid microbial evolution to adapt to ever changing ecologic niches. This is particularly true of RNA viruses such as influenza viruses, flaviviruses, enteroviruses, and coronaviruses, which have inherently deficient or absent polymerase error correction mechanisms and are transmitted as quasispecies or swarms of many, often hundreds or thousands of, genetic variants. Emergences of viral diseases begin with the genetic plasticity of the infectious agent, which may repeatedly encounter ecologic niches into which it can evolve and adapt under facilitative circumstances, e.g., those provided by the hosts in the context of the host environment. For viruses transmitted by person-to-person mechanisms, transmission by quasispecies may increase the likelihood that one or more viral variants within the quasispecies will be infectious for cells of a new host, leading to infection, viral amplification, and expansion of a new and different quasispecies, facilitating onward transmission ...".
...
"Major portals of host entry for infectious agents include those that are visibly external to the environment such as the skin or that can be reached directly from the environment such as the respiratory and gastrointestinal tracts, as well as organs reached systemically such as the liver, heart, and other internal organs. Human beings have many different organ systems, each with many different cell types, and with each cell having arrays of different receptors; therefore, it is not surprising that switching of a pathogen from an animal host to humans results in very different clinical and epidemiologic outcomes, including different disease manifestations and transmission mechanisms. These factors ultimately relate to the potential for establishment of infection in the new host as well as the likelihood of sustained transmission within the new host population and, as such,have a bearing on whether host-switching succeeds or fails. SARS-CoV and SARS-CoV-2 enter cells via ACE-2 receptors (Wang et al., 2020), found on lung alveolar epithelial cells, gastrointestinal enterocytes, arterial and venous endothelial cells, and arterial smooth muscle cells, among other cell types (Hamminget al., 2004; Wang et al., 2020), which explains the excretion of SARS-CoV-2 and potential transmission via the respiratory and enteric routes. With regard to the latter, although SARS-CoV-2 infects cells of the gastrointestinal tract, fecal transmission has not to date been implicated in significant person-to-person viral spread.
(How We Got to COVID-19, emphasis added). The "enteric routes" mentioned in that paper goes from the mouth to the anus/rectum (it's the gut microbiome).

The Dredd Blog series "On The Origin Of The Home Of COVID-19" (links are in the first sentence of Section I above) has hypothesized that "the mass-slaughter-of-animals-for-food industry" is a source of the transmission of the genes of viruses (On The Origin Of The Home Of COVID-19-15).

The posts in that series include the hypothesis that the export of slaughtered meat saturated with viral parts is a source of the spread of that tiny, but pathogenic, machine world.

In fact, that human gut filled with food from "the mass-slaughter-of-animals-for-food industry" is an early warning system for Covid-19:
"A surge in internet searches about gut ailments is helping researchers predict the next Covid-19 hotspots, a study has revealed. Massachusetts General Hospital found areas where there was a spike in Google queries relating to diarrhea and loss of appetite frequently reported a sharp rise in cases of coronavirus three to four weeks later. Other markers included a loss of taste, nausea and abdominal pain."
(Internet searches for gut problems provide early warning of Covid-19 hotspots, 'I've had 'gastric coronavirus' for weeks - why is no one talking about this version of the virus?'). The "gastrointestinal tract" used in the medical profession is "scientific Latin" that simply means "the area from where the food goes in, to where the food comes out", i.e. from the mouth to the rectum.

Thus, our diet is the major factor impacting the gastrointestinal realm:
"The composition of the human gut microbiome is determined by many factors. Eran Segal and colleagues performed an extensive statistical analysis of the largest metagenomics-sequenced human cohort so far to determine the contribution of host genotype to microbiome composition. Host genetics has only a minor influence on microbiome variability, which is more strongly associated with environmental factors such as diet. The authors propose a 'microbiome-association index' that describes the association of the microbiome with host phenotype. Combining this measurement with host genetic and environmental data improves the accuracy of predictions about several human metabolic traits, such as glucose and obesity traits."
...
A wealth of evidence suggests that this incredibly diverse microbial community is regulated by host genetic factors, and more importantly, environmental and dietary factors."
(On The Origin Of The Home Of COVID-19-15). So, it is a logical deduction to say that our research should include a search of the human gut microbiome for "equipment" and "parts" of the viruses that make up the Coronaviridae realm.

III. The Appendices

 The appendices to today's post include searches and comparisons of the Coronaviridae realm (Coronavirus genomes – NCBI Datasets) with the viruses in the GVD (human gut database) ... (GVD Download) (the five largest bases in the GVD are used in the comparisons).

The appendices detail that the "fragmented" residue of Coronaviridae viruses exists in the human gut microbiome.

That is, "equipment" (large segments of the genome ... e.g. "genes") and "parts" (small sections of "equipment") are all over the place in the human gut.

When writing the analysis software, I focused on comparing various machines and parts, that is, comparing the gene bases, the mat_peptide bases, the UTR bases, and the stem_loop bases of the Coronaviridae viruses to the human gut genome machines and parts (could I find the same or relatively similar matches in both genomes?).


Coronaviridae
Meta Hosts
Links
Porcine 1Appendix 1
Porcine 2Appendix 2
Porcine 3Appendix 3
Porcine 4Appendix 4
Porcine 5Appendix 5
AvianAppendix A
BovineAppendix B


IV. Closing Comments

Today's appendices confirm the extracted quote from the paper linked to in Section I above:
"Genetic instability of microorganisms is an inherent property ... This is particularly true of RNA viruses such as ... coronaviruses, which ... are transmitted as ... genetic variants. Emergences of viral diseases begin with the genetic plasticity ..."
(ibid). The tables in the appendices show that "genetic instability" (which I would rather characterize as "sharing of machine equipment and parts") is apparent because Coronaviridae parts and segments (parts of parts, e.g. nuts & bolts) are spread throughout the human gut microbiome.

This spread of the "equipment" and "parts" of the Coronaviridae realm throughout the human gut microbiome is to be expected according to the hypothesis that "the mass-slaughter-of-animals-for-food industry" makes Coronaviridae by destroying the homes of commensal, mutualistic, and symbiotic viruses because that industry generates the breakup of animal-gut single-celled microbes via antibiotics and other toxins.

Then the spread expands by exporting and selling meat products around the world as food which makes up the diet that goes through the human gut in many places.

So, just to reemphasize it, the diet is the food we eat which they produce:
"The composition of the human gut microbiome is determined by ... environmental factors such as diet ... this measurement with host genetic and environmental data improves the accuracy of predictions about several human metabolic traits, such as glucose and obesity traits ... regulated by ... environmental and dietary factors."
(ibid). These dietary products are then spread around the world via the mass exports of those foods and offal (On The Origin Of The Home Of COVID-19 - 15).

And finally, predictions of Covid-19 outbreaks can be made by analyzing the amount of gastrointestinal (gut) problems questions asked after the food is digested:
"A surge in internet searches about gut ailments is helping researchers predict the next Covid-19 hotspots ..."
(ibid). Remember that the "genes" of viruses are machines or parts thereof (On The Origin Of The Home Of COVID-19 - 17).

The previous post in this series is here.

Appendix Avian

This is an appendix to: On The Origin of the Genes of Viruses - 15

The following HTML table columns are as follows:

Genbank Virus Id: the Gen Bank database id of the Coronaviridae virus found in various animal types.

Virus Length: the number of bases in the Coronaviridae virus.

Part Type: the type of the Coronaviridae genome part (gene, misc_feature, mat_peptide, stem_loop, or UTR).

Part Pos: first position of the Coronaviridae part in its bases.

Part Length: the number of bases comprising the Coronaviridae part.

Part Match: how many times that complete Coronaviridae part was found in the Human Gut Database (GVD) virus (rare).

Segment Matches: number of 10-base long segments of the Coronaviridae part found in the GVD virus bases.


Coronaviridae (Avian) viruses found in
the Human Gut Virus Database (GVD)
GVD virus: (Han_2018_ERR1398074; 298,235 bases)
Corona
Virus Id
Virus
Length
Part
Type
Part
Pos
Part
Length
Part
Match
Segment
Matches
KX258195 27,615 gene 529 19,828 0 536
27,615 gene 20,308 3,509 0 87
27,615 gene 23,817 173 0 4
27,615 gene 23,990 191 0 3
27,615 gene 24,165 323 0 10
27,615 gene 24,457 680 0 11
27,615 gene 25,497 197 0 4
27,615 gene 25,691 248 0 2
27,615 gene 25,882 1,229 0 24
KY626044 27,618 gene 529 19,834 0 487
27,618 gene 20,314 3,509 0 83
27,618 gene 23,823 364 0 7
27,618 gene 24,171 323 0 7
27,618 gene 24,463 680 0 14
27,618 gene 25,503 442 0 10
27,618 gene 25,888 1,226 0 30
KY626045 27,652 gene 529 19,834 0 479
27,652 gene 20,314 3,488 0 79
27,652 gene 23,802 367 0 8
27,652 gene 24,150 329 0 8
27,652 gene 24,451 677 0 16
27,652 gene 25,488 442 0 12
27,652 gene 25,873 1,229 0 25
KY933089 27,573 gene 435 19,882 0 522
27,573 gene 435 11,849 0 314
27,573 gene 20,268 3,497 0 77
27,573 gene 23,765 173 0 4
27,573 gene 23,938 191 0 5
27,573 gene 24,110 332 0 14
27,573 gene 24,411 680 0 11
27,573 gene 25,092 284 0 6
27,573 gene 25,297 146 0 6
27,573 gene 25,455 197 0 6
27,573 gene 25,649 248 0 5
27,573 gene 25,840 1,229 0 33
27,573 gene 27,078 221 0 8
KY933090 27,573 gene 435 19,882 0 522
27,573 gene 435 11,849 0 313
27,573 gene 20,268 3,497 0 76
27,573 gene 23,765 173 0 4
27,573 gene 23,938 191 0 5
27,573 gene 24,110 332 0 14
27,573 gene 24,411 680 0 11
27,573 gene 25,092 284 0 6
27,573 gene 25,297 146 0 6
27,573 gene 25,455 197 0 6
27,573 gene 25,649 248 0 5
27,573 gene 25,840 1,229 0 33
27,573 gene 27,078 221 0 8
MK071267 27,632 gene 529 19,834 0 478
27,632 gene 23,802 173 0 4
27,632 gene 23,975 194 0 4
27,632 gene 24,150 329 0 8
27,632 gene 24,451 677 0 16
27,632 gene 25,488 197 0 5
27,632 gene 25,682 248 0 2
27,632 gene 25,873 1,229 0 25
MN262644 27,523 gene 529 11,807 0 323
27,523 gene 12,411 7,973 0 211
27,523 gene 20,320 3,491 0 87
27,523 gene 23,811 173 0 2
27,523 gene 23,984 191 0 6
27,523 gene 24,156 329 0 9
27,523 gene 24,457 677 0 18
27,523 gene 25,493 197 0 5
27,523 gene 25,687 248 0 7
27,523 gene 25,878 1,229 0 25


The following HTML table columns are as follows:

Genbank Virus Id: the Gen Bank database id of the Coronaviridae virus found in various animal types.

Virus Length: the number of bases in the Coronaviridae virus.

Part Type: the type of the Coronaviridae genome part (gene, misc_feature, mat_peptide, stem_loop, or UTR).

Part Pos: first position of the Coronaviridae part in its bases.

Part Length: the number of bases comprising the Coronaviridae part.

Part Match: how many times that complete Coronaviridae part was found in the Human Gut Database (GVD) virus (rare).

Segment Matches: number of 10-base long segments of the Coronaviridae part found in the GVD virus bases.


Coronaviridae (Avian) viruses found in
the Human Gut Virus Database (GVD)
GVD virus: (Han_2018_ERR1398089; 368,996 bases)
Corona
Virus Id
Virus
Length
Part
Type
Part
Pos
Part
Length
Part
Match
Segment
Matches
KX258195 27,615 gene 529 19,828 0 801
27,615 gene 20,308 3,509 0 148
27,615 gene 23,817 173 0 3
27,615 gene 23,990 191 0 12
27,615 gene 24,165 323 0 13
27,615 gene 24,457 680 0 20
27,615 gene 25,497 197 0 7
27,615 gene 25,691 248 0 9
27,615 gene 25,882 1,229 0 45
KY626044 27,618 gene 529 19,834 0 763
27,618 gene 20,314 3,509 0 144
27,618 gene 23,823 364 0 10
27,618 gene 24,171 323 0 16
27,618 gene 24,463 680 0 18
27,618 gene 25,503 442 0 15
27,618 gene 25,888 1,226 0 44
KY626045 27,652 gene 529 19,834 0 768
27,652 gene 20,314 3,488 0 130
27,652 gene 23,802 367 0 11
27,652 gene 24,150 329 0 13
27,652 gene 24,451 677 0 30
27,652 gene 25,488 442 0 15
27,652 gene 25,873 1,229 0 39
KY933089 27,573 gene 435 19,882 0 759
27,573 gene 435 11,849 0 466
27,573 gene 20,268 3,497 0 139
27,573 gene 23,765 173 0 4
27,573 gene 23,938 191 0 12
27,573 gene 24,110 332 0 15
27,573 gene 24,411 680 0 20
27,573 gene 25,092 284 0 13
27,573 gene 25,297 146 0 5
27,573 gene 25,455 197 0 6
27,573 gene 25,649 248 0 9
27,573 gene 25,840 1,229 0 39
27,573 gene 27,078 221 0 11
KY933090 27,573 gene 435 19,882 0 759
27,573 gene 435 11,849 0 466
27,573 gene 20,268 3,497 0 141
27,573 gene 23,765 173 0 4
27,573 gene 23,938 191 0 12
27,573 gene 24,110 332 0 16
27,573 gene 24,411 680 0 20
27,573 gene 25,092 284 0 13
27,573 gene 25,297 146 0 5
27,573 gene 25,455 197 0 6
27,573 gene 25,649 248 0 9
27,573 gene 25,840 1,229 0 39
27,573 gene 27,078 221 0 11
MK071267 27,632 gene 529 19,834 0 768
27,632 gene 23,802 173 0 2
27,632 gene 23,975 194 0 9
27,632 gene 24,150 329 0 13
27,632 gene 24,451 677 0 30
27,632 gene 25,488 197 0 7
27,632 gene 25,682 248 0 9
27,632 gene 25,873 1,229 0 40
MN262644 27,523 gene 529 11,807 0 446
27,523 gene 12,411 7,973 0 291
27,523 gene 20,320 3,491 0 139
27,523 gene 23,811 173 0 9
27,523 gene 23,984 191 0 8
27,523 gene 24,156 329 0 15
27,523 gene 24,457 677 0 26
27,523 gene 25,493 197 0 6
27,523 gene 25,687 248 0 9
27,523 gene 25,878 1,229 0 37


The following HTML table columns are as follows:

Genbank Virus Id: the Gen Bank database id of the Coronaviridae virus found in various animal types.

Virus Length: the number of bases in the Coronaviridae virus.

Part Type: the type of the Coronaviridae genome part (gene, misc_feature, mat_peptide, stem_loop, or UTR).

Part Pos: first position of the Coronaviridae part in its bases.

Part Length: the number of bases comprising the Coronaviridae part.

Part Match: how many times that complete Coronaviridae part was found in the Human Gut Database (GVD) virus (rare).

Segment Matches: number of 10-base long segments of the Coronaviridae part found in the GVD virus bases.


Coronaviridae (Avian) viruses found in
the Human Gut Virus Database (GVD)
GVD virus: (Ma_2019_SRR413588; 279,968 bases)
Corona
Virus Id
Virus
Length
Part
Type
Part
Pos
Part
Length
Part
Match
Segment
Matches
KX258195 27,615 gene 529 19,828 0 552
27,615 gene 20,308 3,509 0 102
27,615 gene 23,817 173 0 3
27,615 gene 23,990 191 0 2
27,615 gene 24,165 323 0 11
27,615 gene 24,457 680 0 18
27,615 gene 25,497 197 0 4
27,615 gene 25,691 248 0 8
27,615 gene 25,882 1,229 0 37
KY626044 27,618 gene 529 19,834 0 575
27,618 gene 20,314 3,509 0 95
27,618 gene 23,823 364 0 4
27,618 gene 24,171 323 0 11
27,618 gene 24,463 680 0 15
27,618 gene 25,503 442 0 12
27,618 gene 25,888 1,226 0 40
KY626045 27,652 gene 529 19,834 0 539
27,652 gene 20,314 3,488 0 88
27,652 gene 23,802 367 0 6
27,652 gene 24,150 329 0 8
27,652 gene 24,451 677 0 22
27,652 gene 25,488 442 0 11
27,652 gene 25,873 1,229 0 36
KY933089 27,573 gene 435 19,882 0 584
27,573 gene 435 11,849 0 363
27,573 gene 20,268 3,497 0 90
27,573 gene 23,765 173 0 5
27,573 gene 23,938 191 0 4
27,573 gene 24,110 332 0 9
27,573 gene 24,411 680 0 21
27,573 gene 25,092 284 0 5
27,573 gene 25,297 146 0 4
27,573 gene 25,455 197 0 1
27,573 gene 25,649 248 0 7
27,573 gene 25,840 1,229 0 38
27,573 gene 27,078 221 0 2
KY933090 27,573 gene 435 19,882 0 583
27,573 gene 435 11,849 0 363
27,573 gene 20,268 3,497 0 91
27,573 gene 23,765 173 0 5
27,573 gene 23,938 191 0 4
27,573 gene 24,110 332 0 10
27,573 gene 24,411 680 0 21
27,573 gene 25,092 284 0 5
27,573 gene 25,297 146 0 4
27,573 gene 25,455 197 0 1
27,573 gene 25,649 248 0 8
27,573 gene 25,840 1,229 0 38
27,573 gene 27,078 221 0 2
MK071267 27,632 gene 529 19,834 0 542
27,632 gene 23,802 173 0 1
27,632 gene 23,975 194 0 5
27,632 gene 24,150 329 0 8
27,632 gene 24,451 677 0 23
27,632 gene 25,488 197 0 4
27,632 gene 25,682 248 0 6
27,632 gene 25,873 1,229 0 37
MN262644 27,523 gene 529 11,807 0 330
27,523 gene 12,411 7,973 0 237
27,523 gene 20,320 3,491 0 101
27,523 gene 23,811 173 0 4
27,523 gene 23,984 191 0 4
27,523 gene 24,156 329 0 14
27,523 gene 24,457 677 0 18
27,523 gene 25,493 197 0 2
27,523 gene 25,687 248 0 4
27,523 gene 25,878 1,229 0 45


The following HTML table columns are as follows:

Genbank Virus Id: the Gen Bank database id of the Coronaviridae virus found in various animal types.

Virus Length: the number of bases in the Coronaviridae virus.

Part Type: the type of the Coronaviridae genome part (gene, misc_feature, mat_peptide, stem_loop, or UTR).

Part Pos: first position of the Coronaviridae part in its bases.

Part Length: the number of bases comprising the Coronaviridae part.

Part Match: how many times that complete Coronaviridae part was found in the Human Gut Database (GVD) virus (rare).

Segment Matches: number of 10-base long segments of the Coronaviridae part found in the GVD virus bases.


Coronaviridae (Avian) viruses found in
the Human Gut Virus Database (GVD)
GVD virus: (Ma_2019_SRR413675; 392,017 bases)
Corona
Virus Id
Virus
Length
Part
Type
Part
Pos
Part
Length
Part
Match
Segment
Matches
KX258195 27,615 gene 529 19,828 0 784
27,615 gene 20,308 3,509 0 168
27,615 gene 23,817 173 0 8
27,615 gene 23,990 191 0 10
27,615 gene 24,165 323 0 13
27,615 gene 24,457 680 0 26
27,615 gene 25,497 197 0 7
27,615 gene 25,691 248 0 6
27,615 gene 25,882 1,229 0 29
KY626044 27,618 gene 529 19,834 0 810
27,618 gene 20,314 3,509 0 163
27,618 gene 23,823 364 0 17
27,618 gene 24,171 323 0 14
27,618 gene 24,463 680 0 28
27,618 gene 25,503 442 0 17
27,618 gene 25,888 1,226 0 34
KY626045 27,652 gene 529 19,834 0 783
27,652 gene 20,314 3,488 0 156
27,652 gene 23,802 367 0 16
27,652 gene 24,150 329 0 18
27,652 gene 24,451 677 0 25
27,652 gene 25,488 442 0 14
27,652 gene 25,873 1,229 0 30
KY933089 27,573 gene 435 19,882 0 799
27,573 gene 435 11,849 0 476
27,573 gene 20,268 3,497 0 163
27,573 gene 23,765 173 0 8
27,573 gene 23,938 191 0 11
27,573 gene 24,110 332 0 17
27,573 gene 24,411 680 0 29
27,573 gene 25,092 284 0 12
27,573 gene 25,297 146 0 6
27,573 gene 25,455 197 0 7
27,573 gene 25,649 248 0 7
27,573 gene 25,840 1,229 0 36
27,573 gene 27,078 221 0 9
KY933090 27,573 gene 435 19,882 0 803
27,573 gene 435 11,849 0 479
27,573 gene 20,268 3,497 0 162
27,573 gene 23,765 173 0 8
27,573 gene 23,938 191 0 11
27,573 gene 24,110 332 0 16
27,573 gene 24,411 680 0 29
27,573 gene 25,092 284 0 12
27,573 gene 25,297 146 0 6
27,573 gene 25,455 197 0 7
27,573 gene 25,649 248 0 8
27,573 gene 25,840 1,229 0 36
27,573 gene 27,078 221 0 9
MK071267 27,632 gene 529 19,834 0 779
27,632 gene 23,802 173 0 7
27,632 gene 23,975 194 0 15
27,632 gene 24,150 329 0 18
27,632 gene 24,451 677 0 25
27,632 gene 25,488 197 0 6
27,632 gene 25,682 248 0 5
27,632 gene 25,873 1,229 0 28
MN262644 27,523 gene 529 11,807 0 473
27,523 gene 12,411 7,973 0 310
27,523 gene 20,320 3,491 0 150
27,523 gene 23,811 173 0 7
27,523 gene 23,984 191 0 13
27,523 gene 24,156 329 0 14
27,523 gene 24,457 677 0 22
27,523 gene 25,493 197 0 8
27,523 gene 25,687 248 0 7
27,523 gene 25,878 1,229 0 28


The following HTML table columns are as follows:

Genbank Virus Id: the Gen Bank database id of the Coronaviridae virus found in various animal types.

Virus Length: the number of bases in the Coronaviridae virus.

Part Type: the type of the Coronaviridae genome part (gene, misc_feature, mat_peptide, stem_loop, or UTR).

Part Pos: first position of the Coronaviridae part in its bases.

Part Length: the number of bases comprising the Coronaviridae part.

Part Match: how many times that complete Coronaviridae part was found in the Human Gut Database (GVD) virus (rare).

Segment Matches: number of 10-base long segments of the Coronaviridae part found in the GVD virus bases.


Coronaviridae (Avian) viruses found in
the Human Gut Virus Database (GVD)
GVD virus: (Shkoporov_2019_SRR9161502; 293,130 bases)
Corona
Virus Id
Virus
Length
Part
Type
Part
Pos
Part
Length
Part
Match
Segment
Matches
KX258195 27,615 gene 529 19,828 0 753
27,615 gene 20,308 3,509 0 134
27,615 gene 23,817 173 0 5
27,615 gene 23,990 191 0 9
27,615 gene 24,165 323 0 9
27,615 gene 24,457 680 0 22
27,615 gene 25,497 197 0 6
27,615 gene 25,691 248 0 8
27,615 gene 25,882 1,229 0 31
KY626044 27,618 gene 529 19,834 0 755
27,618 gene 20,314 3,509 0 137
27,618 gene 23,823 364 0 11
27,618 gene 24,171 323 0 11
27,618 gene 24,463 680 0 26
27,618 gene 25,503 442 0 17
27,618 gene 25,888 1,226 0 33
KY626045 27,652 gene 529 19,834 0 753
27,652 gene 20,314 3,488 0 127
27,652 gene 23,802 367 0 12
27,652 gene 24,150 329 0 17
27,652 gene 24,451 677 0 27
27,652 gene 25,488 442 0 14
27,652 gene 25,873 1,229 0 36
KY933089 27,573 gene 435 19,882 0 728
27,573 gene 435 11,849 0 437
27,573 gene 20,268 3,497 0 141
27,573 gene 23,765 173 0 3
27,573 gene 23,938 191 0 11
27,573 gene 24,110 332 0 11
27,573 gene 24,411 680 0 20
27,573 gene 25,092 284 0 11
27,573 gene 25,297 146 0 7
27,573 gene 25,455 197 0 8
27,573 gene 25,649 248 0 7
27,573 gene 25,840 1,229 0 31
27,573 gene 27,078 221 0 10
KY933090 27,573 gene 435 19,882 0 729
27,573 gene 435 11,849 0 438
27,573 gene 20,268 3,497 0 145
27,573 gene 23,765 173 0 3
27,573 gene 23,938 191 0 11
27,573 gene 24,110 332 0 11
27,573 gene 24,411 680 0 20
27,573 gene 25,092 284 0 11
27,573 gene 25,297 146 0 7
27,573 gene 25,455 197 0 8
27,573 gene 25,649 248 0 6
27,573 gene 25,840 1,229 0 31
27,573 gene 27,078 221 0 10
MK071267 27,632 gene 529 19,834 0 749
27,632 gene 23,802 173 0 6
27,632 gene 23,975 194 0 10
27,632 gene 24,150 329 0 17
27,632 gene 24,451 677 0 27
27,632 gene 25,488 197 0 5
27,632 gene 25,682 248 0 4
27,632 gene 25,873 1,229 0 35
MN262644 27,523 gene 529 11,807 0 441
27,523 gene 12,411 7,973 0 290
27,523 gene 20,320 3,491 0 123
27,523 gene 23,811 173 0 6
27,523 gene 23,984 191 0 11
27,523 gene 24,156 329 0 10
27,523 gene 24,457 677 0 25
27,523 gene 25,493 197 0 5
27,523 gene 25,687 248 0 5
27,523 gene 25,878 1,229 0 40


Appendix Bovine

This is an appendix to: On The Origin of the Genes of Viruses - 15

The following HTML table columns are as follows:

Genbank Virus Id: the Gen Bank database id of the Coronaviridae virus found in various animal types.

Virus Length: the number of bases in the Coronaviridae virus.

Part Type: the type of the Coronaviridae genome part (gene, misc_feature, mat_peptide, stem_loop, or UTR).

Part Pos: first position of the Coronaviridae part in its bases.

Part Length: the number of bases comprising the Coronaviridae part.

Part Match: how many times that complete Coronaviridae part was found in the Human Gut Database (GVD) virus (rare).

Segment Matches: number of 10-base long segments of the Coronaviridae part found in the GVD virus bases.


Coronaviridae (Bovine) viruses found in
the Human Gut Virus Database (GVD)
GVD virus: (Han_2018_ERR1398074; 298,235 bases)
Corona
Virus Id
Virus
Length
Part
Type
Part
Pos
Part
Length
Part
Match
Segment
Matches
AF220295 31,100 gene 21,521 833 0 19
31,100 gene 22,366 1,274 0 32
31,100 gene 23,655 4,091 0 108
31,100 gene 28,438 254 0 10
31,100 gene 28,707 692 0 17
31,100 gene 29,409 1,346 0 38
AF391541 31,028 gene 21,504 836 0 19
31,028 gene 22,352 1,274 0 31
31,028 gene 23,641 4,091 0 110
31,028 gene 28,422 254 0 9
31,028 gene 28,691 692 0 18
31,028 gene 29,393 1,346 0 34
31,028 5_UTR 1 209 0 6
31,028 3_UTR 30,740 288 0 7
AF391542 31,028 gene 21,504 836 0 18
31,028 gene 22,352 1,274 0 33
31,028 gene 23,641 4,091 0 112
31,028 gene 28,422 254 0 8
31,028 gene 28,691 692 0 19
31,028 gene 29,393 1,346 0 33
31,028 5_UTR 1 209 0 6
31,028 3_UTR 30,740 288 0 7
DQ915164 31,076 gene 21,504 836 0 20
31,076 gene 22,352 1,274 0 30
31,076 gene 23,641 4,091 0 109
31,076 gene 28,106 329 0 7
31,076 gene 28,660 722 0 17
31,076 gene 29,392 1,346 0 35
31,076 5_UTR 1 209 0 6
31,076 3_UTR 30,994 82 0 6
EF424615 31,017 gene 211 13,151 0 325
31,017 gene 13,341 8,153 0 213
31,017 gene 21,504 836 0 19
31,017 gene 22,352 1,274 0 33
31,017 gene 23,641 4,091 0 113
31,017 gene 27,722 89 0 2
31,017 gene 27,889 137 0 1
31,017 gene 28,106 329 0 7
31,017 gene 28,422 254 0 9
31,017 gene 28,691 692 0 18
31,017 gene 29,393 1,346 0 35
EF424616 30,970 gene 195 13,151 0 328
30,970 gene 13,325 8,153 0 210
30,970 gene 21,488 836 0 19
30,970 gene 22,336 1,274 0 30
30,970 gene 23,625 4,091 0 110
30,970 gene 27,706 89 0 2
30,970 gene 27,873 137 0 2
30,970 gene 28,090 329 0 7
30,970 gene 28,406 254 0 9
30,970 gene 28,675 692 0 18
30,970 gene 29,377 1,346 0 34
EF424617 31,016 gene 195 13,151 0 328
31,016 gene 13,325 8,153 0 213
31,016 gene 21,488 836 0 19
31,016 gene 22,336 1,274 0 31
31,016 gene 23,625 4,091 0 109
31,016 gene 27,706 89 0 2
31,016 gene 27,873 137 0 2
31,016 gene 28,090 329 0 7
31,016 gene 28,406 254 0 9
31,016 gene 28,675 692 0 18
31,016 gene 29,377 1,346 0 34
EF424618 30,995 gene 195 13,151 0 329
30,995 gene 13,325 8,153 0 213
30,995 gene 21,488 836 0 19
30,995 gene 22,336 1,274 0 31
30,995 gene 23,625 4,091 0 109
30,995 gene 27,706 89 0 2
30,995 gene 27,873 137 0 2
30,995 gene 28,090 329 0 7
30,995 gene 28,406 254 0 9
30,995 gene 28,675 692 0 18
30,995 gene 29,377 1,346 0 34
EF424619 30,995 gene 195 13,151 0 325
30,995 gene 13,325 8,153 0 207
30,995 gene 21,488 836 0 16
30,995 gene 22,336 1,274 0 31
30,995 gene 23,625 4,091 0 107
30,995 gene 27,706 89 0 2
30,995 gene 27,873 137 0 1
30,995 gene 28,090 329 0 7
30,995 gene 28,406 254 0 9
30,995 gene 28,675 692 0 18
30,995 gene 29,377 1,346 0 33
EF424620 30,964 gene 195 13,151 0 332
30,964 gene 13,325 8,153 0 209
30,964 gene 21,488 836 0 19
30,964 gene 22,336 1,274 0 34
30,964 gene 23,625 4,091 0 113
30,964 gene 27,706 89 0 2
30,964 gene 27,873 137 0 2
30,964 gene 28,090 329 0 7
30,964 gene 28,406 254 0 9
30,964 gene 28,675 692 0 18
30,964 gene 29,377 1,346 0 33
NC_003045 31,028 gene 211 21,283 0 541
31,028 gene 21,504 836 0 19
31,028 gene 22,352 1,274 0 31
31,028 gene 23,641 4,091 0 110
31,028 gene 27,722 89 0 2
31,028 gene 27,889 137 0 1
31,028 gene 28,106 329 0 7
31,028 gene 28,422 254 0 9
31,028 gene 28,691 692 0 18
31,028 gene 29,393 1,346 0 34
31,028 mat_peptide 211 737 0 17
31,028 mat_peptide 949 1,814 0 44
31,028 mat_peptide 2,764 5,696 0 160
31,028 mat_peptide 8,461 1,487 0 38
31,028 mat_peptide 9,949 908 0 20
31,028 mat_peptide 10,858 860 0 25
31,028 mat_peptide 11,719 266 0 10
31,028 mat_peptide 11,986 590 0 14
31,028 mat_peptide 12,577 329 0 7
31,028 mat_peptide 12,907 410 0 15
31,028 mat_peptide 16,101 1,808 0 38
31,028 mat_peptide 17,910 1,562 0 39
31,028 mat_peptide 19,473 1,121 0 25
31,028 mat_peptide 20,595 896 0 21
31,028 5_UTR 1 209 0 6
31,028 3_UTR 30,740 288 0 7
BCU00735 31,032 gene 22,337 1,289 0 19
31,032 gene 23,641 4,091 0 106
31,032 gene 28,426 254 0 10
31,032 gene 28,695 692 0 17
31,032 gene 29,397 1,346 0 38
31,032 mat_peptide 22,406 1,217 0 32
31,032 mat_peptide 23,692 4,037 0 84
31,032 5_UTR 1 209 0 6
31,032 3_UTR 30,741 291 0 4
KX982264 30,847 gene 146 21,274 0 547
30,847 gene 146 13,142 0 338
30,847 gene 21,430 836 0 21
30,847 gene 22,278 1,274 0 28
30,847 gene 23,567 4,091 0 111
30,847 gene 28,346 254 0 9
30,847 gene 28,615 692 0 19
30,847 gene 29,317 1,346 0 33
MG757138 31,026 gene 208 21,283 0 538
31,026 gene 208 13,151 0 330
31,026 gene 21,501 836 0 22
31,026 gene 22,349 1,274 0 29
31,026 gene 23,638 4,091 0 109
31,026 gene 27,719 131 0 4
31,026 gene 27,886 134 0 3
31,026 gene 28,104 329 0 8
31,026 gene 28,420 254 0 9
31,026 gene 28,689 692 0 20
31,026 gene 29,391 1,346 0 33
MG757139 31,028 gene 197 21,283 0 543
31,028 gene 197 13,151 0 332
31,028 gene 21,490 836 0 21
31,028 gene 22,338 1,274 0 30
31,028 gene 23,627 4,094 0 106
31,028 gene 27,711 131 0 4
31,028 gene 27,878 131 0 2
31,028 gene 28,090 329 0 7
31,028 gene 28,406 254 0 9
31,028 gene 28,675 692 0 20
31,028 gene 29,377 1,346 0 34
MG757140 31,024 gene 209 21,283 0 543
31,024 gene 209 13,151 0 332
31,024 gene 21,502 836 0 21
31,024 gene 22,350 1,271 0 31
31,024 gene 23,636 4,094 0 106
31,024 gene 27,720 131 0 4
31,024 gene 27,887 131 0 2
31,024 gene 28,102 329 0 7
31,024 gene 28,418 254 0 9
31,024 gene 28,687 692 0 20
31,024 gene 29,389 1,346 0 33
MG757141 31,019 gene 194 21,283 0 542
31,019 gene 194 13,151 0 331
31,019 gene 21,487 836 0 21
31,019 gene 22,335 1,274 0 30
31,019 gene 23,624 4,094 0 106
31,019 gene 27,708 131 0 4
31,019 gene 27,875 131 0 2
31,019 gene 28,090 329 0 7
31,019 gene 28,406 254 0 9
31,019 gene 28,675 692 0 20
31,019 gene 29,377 1,346 0 33
MG757142 30,939 gene 108 21,283 0 543
30,939 gene 108 13,151 0 331
30,939 gene 21,401 836 0 21
30,939 gene 22,249 1,271 0 31
30,939 gene 23,535 4,094 0 106
30,939 gene 27,619 131 0 4
30,939 gene 27,786 131 0 2
30,939 gene 28,001 329 0 7
30,939 gene 28,317 254 0 9
30,939 gene 28,586 692 0 20
30,939 gene 29,288 1,346 0 33
MH043952 31,019 gene 22,352 1,274 0 31
31,019 gene 23,641 4,091 0 111
31,019 gene 28,413 254 0 9
31,019 gene 28,682 692 0 19
31,019 gene 29,384 1,346 0 35
31,019 5_UTR 1 209 0 6
31,019 3_UTR 30,728 291 0 5
MH043953 31,032 gene 22,352 1,274 0 29
31,032 gene 23,641 4,091 0 115
31,032 gene 28,432 248 0 6
31,032 gene 28,695 692 0 18
31,032 gene 29,397 1,346 0 34
31,032 5_UTR 1 209 0 6
31,032 3_UTR 30,741 291 0 4
MH043954 31,016 gene 22,352 1,274 0 32
31,016 gene 23,641 4,091 0 112
31,016 gene 28,410 254 0 9
31,016 gene 28,679 692 0 18
31,016 gene 29,381 1,346 0 35
31,016 5_UTR 1 209 0 6
31,016 3_UTR 30,725 291 0 4
MH043955 31,032 gene 22,352 1,274 0 32
31,032 gene 23,641 4,091 0 111
31,032 gene 28,426 254 0 9
31,032 gene 28,695 692 0 17
31,032 gene 29,397 1,346 0 34
31,032 5_UTR 1 209 0 6
31,032 3_UTR 30,741 291 0 3


The following HTML table columns are as follows:

Genbank Virus Id: the Gen Bank database id of the Coronaviridae virus found in various animal types.

Virus Length: the number of bases in the Coronaviridae virus.

Part Type: the type of the Coronaviridae genome part (gene, misc_feature, mat_peptide, stem_loop, or UTR).

Part Pos: first position of the Coronaviridae part in its bases.

Part Length: the number of bases comprising the Coronaviridae part.

Part Match: how many times that complete Coronaviridae part was found in the Human Gut Database (GVD) virus (rare).

Segment Matches: number of 10-base long segments of the Coronaviridae part found in the GVD virus bases.


Coronaviridae (Bovine) viruses found in
the Human Gut Virus Database (GVD)
GVD virus: (Han_2018_ERR1398089; 368,996 bases)
Corona
Virus Id
Virus
Length
Part
Type
Part
Pos
Part
Length
Part
Match
Segment
Matches
AF220295 31,100 gene 21,521 833 0 34
31,100 gene 22,366 1,274 0 51
31,100 gene 23,655 4,091 0 169
31,100 gene 28,438 254 0 13
31,100 gene 28,707 692 0 17
31,100 gene 29,409 1,346 0 42
AF391541 31,028 gene 21,504 836 0 40
31,028 gene 22,352 1,274 0 49
31,028 gene 23,641 4,091 0 164
31,028 gene 28,422 254 0 14
31,028 gene 28,691 692 0 19
31,028 gene 29,393 1,346 0 42
31,028 5_UTR 1 209 0 5
31,028 3_UTR 30,740 288 0 9
AF391542 31,028 gene 21,504 836 0 41
31,028 gene 22,352 1,274 0 51
31,028 gene 23,641 4,091 0 167
31,028 gene 28,422 254 0 14
31,028 gene 28,691 692 0 21
31,028 gene 29,393 1,346 0 42
31,028 5_UTR 1 209 0 5
31,028 3_UTR 30,740 288 0 9
DQ915164 31,076 gene 21,504 836 0 41
31,076 gene 22,352 1,274 0 48
31,076 gene 23,641 4,091 0 163
31,076 gene 28,106 329 0 14
31,076 gene 28,660 722 0 21
31,076 gene 29,392 1,346 0 41
31,076 5_UTR 1 209 0 5
31,076 3_UTR 30,994 82 0 7
EF424615 31,017 gene 211 13,151 0 537
31,017 gene 13,341 8,153 0 319
31,017 gene 21,504 836 0 42
31,017 gene 22,352 1,274 0 51
31,017 gene 23,641 4,091 0 166
31,017 gene 27,722 89 0 6
31,017 gene 27,889 137 0 3
31,017 gene 28,106 329 0 13
31,017 gene 28,422 254 0 14
31,017 gene 28,691 692 0 19
31,017 gene 29,393 1,346 0 41
EF424616 30,970 gene 195 13,151 0 540
30,970 gene 13,325 8,153 0 320
30,970 gene 21,488 836 0 41
30,970 gene 22,336 1,274 0 49
30,970 gene 23,625 4,091 0 164
30,970 gene 27,706 89 0 5
30,970 gene 27,873 137 0 5
30,970 gene 28,090 329 0 14
30,970 gene 28,406 254 0 14
30,970 gene 28,675 692 0 20
30,970 gene 29,377 1,346 0 41
EF424617 31,016 gene 195 13,151 0 536
31,016 gene 13,325 8,153 0 322
31,016 gene 21,488 836 0 41
31,016 gene 22,336 1,274 0 48
31,016 gene 23,625 4,091 0 163
31,016 gene 27,706 89 0 5
31,016 gene 27,873 137 0 5
31,016 gene 28,090 329 0 14
31,016 gene 28,406 254 0 14
31,016 gene 28,675 692 0 21
31,016 gene 29,377 1,346 0 40
EF424618 30,995 gene 195 13,151 0 536
30,995 gene 13,325 8,153 0 322
30,995 gene 21,488 836 0 41
30,995 gene 22,336 1,274 0 48
30,995 gene 23,625 4,091 0 163
30,995 gene 27,706 89 0 5
30,995 gene 27,873 137 0 5
30,995 gene 28,090 329 0 14
30,995 gene 28,406 254 0 14
30,995 gene 28,675 692 0 21
30,995 gene 29,377 1,346 0 40
EF424619 30,995 gene 195 13,151 0 529
30,995 gene 13,325 8,153 0 313
30,995 gene 21,488 836 0 39
30,995 gene 22,336 1,274 0 49
30,995 gene 23,625 4,091 0 156
30,995 gene 27,706 89 0 5
30,995 gene 27,873 137 0 3
30,995 gene 28,090 329 0 14
30,995 gene 28,406 254 0 14
30,995 gene 28,675 692 0 19
30,995 gene 29,377 1,346 0 41
EF424620 30,964 gene 195 13,151 0 539
30,964 gene 13,325 8,153 0 320
30,964 gene 21,488 836 0 41
30,964 gene 22,336 1,274 0 51
30,964 gene 23,625 4,091 0 170
30,964 gene 27,706 89 0 6
30,964 gene 27,873 137 0 5
30,964 gene 28,090 329 0 14
30,964 gene 28,406 254 0 14
30,964 gene 28,675 692 0 20
30,964 gene 29,377 1,346 0 41
NC_003045 31,028 gene 211 21,283 0 870
31,028 gene 21,504 836 0 40
31,028 gene 22,352 1,274 0 49
31,028 gene 23,641 4,091 0 164
31,028 gene 27,722 89 0 6
31,028 gene 27,889 137 0 2
31,028 gene 28,106 329 0 14
31,028 gene 28,422 254 0 14
31,028 gene 28,691 692 0 19
31,028 gene 29,393 1,346 0 42
31,028 mat_peptide 211 737 0 27
31,028 mat_peptide 949 1,814 0 75
31,028 mat_peptide 2,764 5,696 0 238
31,028 mat_peptide 8,461 1,487 0 62
31,028 mat_peptide 9,949 908 0 34
31,028 mat_peptide 10,858 860 0 36
31,028 mat_peptide 11,719 266 0 9
31,028 mat_peptide 11,986 590 0 21
31,028 mat_peptide 12,577 329 0 19
31,028 mat_peptide 12,907 410 0 15
31,028 mat_peptide 16,101 1,808 0 77
31,028 mat_peptide 17,910 1,562 0 65
31,028 mat_peptide 19,473 1,121 0 49
31,028 mat_peptide 20,595 896 0 40
31,028 5_UTR 1 209 0 5
31,028 3_UTR 30,740 288 0 9
BCU00735 31,032 gene 22,337 1,289 0 56
31,032 gene 23,641 4,091 0 170
31,032 gene 28,426 254 0 13
31,032 gene 28,695 692 0 17
31,032 gene 29,397 1,346 0 42
31,032 mat_peptide 22,406 1,217 0 48
31,032 mat_peptide 23,692 4,037 0 163
31,032 5_UTR 1 209 0 5
31,032 3_UTR 30,741 291 0 11
KX982264 30,847 gene 146 21,274 0 866
30,847 gene 146 13,142 0 546
30,847 gene 21,430 836 0 40
30,847 gene 22,278 1,274 0 46
30,847 gene 23,567 4,091 0 167
30,847 gene 28,346 254 0 14
30,847 gene 28,615 692 0 19
30,847 gene 29,317 1,346 0 42
MG757138 31,026 gene 208 21,283 0 854
31,026 gene 208 13,151 0 542
31,026 gene 21,501 836 0 41
31,026 gene 22,349 1,274 0 47
31,026 gene 23,638 4,091 0 173
31,026 gene 27,719 131 0 4
31,026 gene 27,886 134 0 4
31,026 gene 28,104 329 0 15
31,026 gene 28,420 254 0 14
31,026 gene 28,689 692 0 19
31,026 gene 29,391 1,346 0 41
MG757139 31,028 gene 197 21,283 0 853
31,028 gene 197 13,151 0 541
31,028 gene 21,490 836 0 40
31,028 gene 22,338 1,274 0 47
31,028 gene 23,627 4,094 0 163
31,028 gene 27,711 131 0 4
31,028 gene 27,878 131 0 5
31,028 gene 28,090 329 0 16
31,028 gene 28,406 254 0 14
31,028 gene 28,675 692 0 19
31,028 gene 29,377 1,346 0 41
MG757140 31,024 gene 209 21,283 0 853
31,024 gene 209 13,151 0 541
31,024 gene 21,502 836 0 40
31,024 gene 22,350 1,271 0 52
31,024 gene 23,636 4,094 0 163
31,024 gene 27,720 131 0 4
31,024 gene 27,887 131 0 5
31,024 gene 28,102 329 0 16
31,024 gene 28,418 254 0 14
31,024 gene 28,687 692 0 19
31,024 gene 29,389 1,346 0 42
MG757141 31,019 gene 194 21,283 0 854
31,019 gene 194 13,151 0 542
31,019 gene 21,487 836 0 40
31,019 gene 22,335 1,274 0 47
31,019 gene 23,624 4,094 0 163
31,019 gene 27,708 131 0 4
31,019 gene 27,875 131 0 5
31,019 gene 28,090 329 0 16
31,019 gene 28,406 254 0 14
31,019 gene 28,675 692 0 19
31,019 gene 29,377 1,346 0 42
MG757142 30,939 gene 108 21,283 0 854
30,939 gene 108 13,151 0 541
30,939 gene 21,401 836 0 41
30,939 gene 22,249 1,271 0 52
30,939 gene 23,535 4,094 0 163
30,939 gene 27,619 131 0 4
30,939 gene 27,786 131 0 5
30,939 gene 28,001 329 0 16
30,939 gene 28,317 254 0 14
30,939 gene 28,586 692 0 19
30,939 gene 29,288 1,346 0 42
MH043952 31,019 gene 22,352 1,274 0 52
31,019 gene 23,641 4,091 0 168
31,019 gene 28,413 254 0 14
31,019 gene 28,682 692 0 21
31,019 gene 29,384 1,346 0 40
31,019 5_UTR 1 209 0 4
31,019 3_UTR 30,728 291 0 13
MH043953 31,032 gene 22,352 1,274 0 49
31,032 gene 23,641 4,091 0 168
31,032 gene 28,432 248 0 11
31,032 gene 28,695 692 0 20
31,032 gene 29,397 1,346 0 41
31,032 5_UTR 1 209 0 4
31,032 3_UTR 30,741 291 0 12
MH043954 31,016 gene 22,352 1,274 0 51
31,016 gene 23,641 4,091 0 171
31,016 gene 28,410 254 0 14
31,016 gene 28,679 692 0 20
31,016 gene 29,381 1,346 0 41
31,016 5_UTR 1 209 0 4
31,016 3_UTR 30,725 291 0 12
MH043955 31,032 gene 22,352 1,274 0 51
31,032 gene 23,641 4,091 0 169
31,032 gene 28,426 254 0 14
31,032 gene 28,695 692 0 20
31,032 gene 29,397 1,346 0 41
31,032 5_UTR 1 209 0 4
31,032 3_UTR 30,741 291 0 11


The following HTML table columns are as follows:

Genbank Virus Id: the Gen Bank database id of the Coronaviridae virus found in various animal types.

Virus Length: the number of bases in the Coronaviridae virus.

Part Type: the type of the Coronaviridae genome part (gene, misc_feature, mat_peptide, stem_loop, or UTR).

Part Pos: first position of the Coronaviridae part in its bases.

Part Length: the number of bases comprising the Coronaviridae part.

Part Match: how many times that complete Coronaviridae part was found in the Human Gut Database (GVD) virus (rare).

Segment Matches: number of 10-base long segments of the Coronaviridae part found in the GVD virus bases.


Coronaviridae (Bovine) viruses found in
the Human Gut Virus Database (GVD)
GVD virus: (Ma_2019_SRR413588; 279,968 bases)
Corona
Virus Id
Virus
Length
Part
Type
Part
Pos
Part
Length
Part
Match
Segment
Matches
AF220295 31,100 gene 21,521 833 0 27
31,100 gene 22,366 1,274 0 33
31,100 gene 23,655 4,091 0 100
31,100 gene 28,438 254 0 7
31,100 gene 28,707 692 0 17
31,100 gene 29,409 1,346 0 37
AF391541 31,028 gene 21,504 836 0 28
31,028 gene 22,352 1,274 0 32
31,028 gene 23,641 4,091 0 102
31,028 gene 28,422 254 0 7
31,028 gene 28,691 692 0 17
31,028 gene 29,393 1,346 0 38
31,028 5_UTR 1 209 0 2
31,028 3_UTR 30,740 288 0 9
AF391542 31,028 gene 21,504 836 0 28
31,028 gene 22,352 1,274 0 32
31,028 gene 23,641 4,091 0 106
31,028 gene 28,422 254 0 8
31,028 gene 28,691 692 0 17
31,028 gene 29,393 1,346 0 39
31,028 5_UTR 1 209 0 2
31,028 3_UTR 30,740 288 0 9
DQ915164 31,076 gene 21,504 836 0 30
31,076 gene 22,352 1,274 0 32
31,076 gene 23,641 4,091 0 104
31,076 gene 28,106 329 0 8
31,076 gene 28,660 722 0 17
31,076 gene 29,392 1,346 0 40
31,076 5_UTR 1 209 0 2
31,076 3_UTR 30,994 82 0 2
EF424615 31,017 gene 211 13,151 0 389
31,017 gene 13,341 8,153 0 207
31,017 gene 21,504 836 0 30
31,017 gene 22,352 1,274 0 30
31,017 gene 23,641 4,091 0 105
31,017 gene 27,722 89 0 3
31,017 gene 27,889 137 0 4
31,017 gene 28,106 329 0 7
31,017 gene 28,422 254 0 7
31,017 gene 28,691 692 0 17
31,017 gene 29,393 1,346 0 40
EF424616 30,970 gene 195 13,151 0 389
30,970 gene 13,325 8,153 0 211
30,970 gene 21,488 836 0 29
30,970 gene 22,336 1,274 0 32
30,970 gene 23,625 4,091 0 104
30,970 gene 27,706 89 0 4
30,970 gene 27,873 137 0 4
30,970 gene 28,090 329 0 7
30,970 gene 28,406 254 0 7
30,970 gene 28,675 692 0 17
30,970 gene 29,377 1,346 0 40
EF424617 31,016 gene 195 13,151 0 385
31,016 gene 13,325 8,153 0 210
31,016 gene 21,488 836 0 29
31,016 gene 22,336 1,274 0 32
31,016 gene 23,625 4,091 0 104
31,016 gene 27,706 89 0 4
31,016 gene 27,873 137 0 4
31,016 gene 28,090 329 0 7
31,016 gene 28,406 254 0 7
31,016 gene 28,675 692 0 16
31,016 gene 29,377 1,346 0 41
EF424618 30,995 gene 195 13,151 0 386
30,995 gene 13,325 8,153 0 210
30,995 gene 21,488 836 0 29
30,995 gene 22,336 1,274 0 32
30,995 gene 23,625 4,091 0 104
30,995 gene 27,706 89 0 4
30,995 gene 27,873 137 0 4
30,995 gene 28,090 329 0 7
30,995 gene 28,406 254 0 7
30,995 gene 28,675 692 0 16
30,995 gene 29,377 1,346 0 41
EF424619 30,995 gene 195 13,151 0 379
30,995 gene 13,325 8,153 0 203
30,995 gene 21,488 836 0 27
30,995 gene 22,336 1,274 0 31
30,995 gene 23,625 4,091 0 99
30,995 gene 27,706 89 0 2
30,995 gene 27,873 137 0 4
30,995 gene 28,090 329 0 7
30,995 gene 28,406 254 0 7
30,995 gene 28,675 692 0 16
30,995 gene 29,377 1,346 0 38
EF424620 30,964 gene 195 13,151 0 390
30,964 gene 13,325 8,153 0 210
30,964 gene 21,488 836 0 29
30,964 gene 22,336 1,274 0 32
30,964 gene 23,625 4,091 0 104
30,964 gene 27,706 89 0 3
30,964 gene 27,873 137 0 3
30,964 gene 28,090 329 0 7
30,964 gene 28,406 254 0 7
30,964 gene 28,675 692 0 17
30,964 gene 29,377 1,346 0 40
NC_003045 31,028 gene 211 21,283 0 603
31,028 gene 21,504 836 0 28
31,028 gene 22,352 1,274 0 32
31,028 gene 23,641 4,091 0 102
31,028 gene 27,722 89 0 3
31,028 gene 27,889 137 0 4
31,028 gene 28,106 329 0 7
31,028 gene 28,422 254 0 7
31,028 gene 28,691 692 0 17
31,028 gene 29,393 1,346 0 38
31,028 mat_peptide 211 737 0 25
31,028 mat_peptide 949 1,814 0 43
31,028 mat_peptide 2,764 5,696 0 161
31,028 mat_peptide 8,461 1,487 0 39
31,028 mat_peptide 9,949 908 0 22
31,028 mat_peptide 10,858 860 0 32
31,028 mat_peptide 11,719 266 0 8
31,028 mat_peptide 11,986 590 0 21
31,028 mat_peptide 12,577 329 0 9
31,028 mat_peptide 12,907 410 0 11
31,028 mat_peptide 16,101 1,808 0 48
31,028 mat_peptide 17,910 1,562 0 33
31,028 mat_peptide 19,473 1,121 0 25
31,028 mat_peptide 20,595 896 0 23
31,028 5_UTR 1 209 0 2
31,028 3_UTR 30,740 288 0 9
BCU00735 31,032 gene 22,337 1,289 0 32
31,032 gene 23,641 4,091 0 100
31,032 gene 28,426 254 0 7
31,032 gene 28,695 692 0 17
31,032 gene 29,397 1,346 0 37
31,032 mat_peptide 22,406 1,217 0 38
31,032 mat_peptide 23,692 4,037 0 104
31,032 5_UTR 1 209 0 3
31,032 3_UTR 30,741 291 0 10
KX982264 30,847 gene 146 21,274 0 614
30,847 gene 146 13,142 0 381
30,847 gene 21,430 836 0 28
30,847 gene 22,278 1,274 0 34
30,847 gene 23,567 4,091 0 104
30,847 gene 28,346 254 0 7
30,847 gene 28,615 692 0 18
30,847 gene 29,317 1,346 0 38
MG757138 31,026 gene 208 21,283 0 605
31,026 gene 208 13,151 0 392
31,026 gene 21,501 836 0 29
31,026 gene 22,349 1,274 0 33
31,026 gene 23,638 4,091 0 99
31,026 gene 27,719 131 0 2
31,026 gene 27,886 134 0 1
31,026 gene 28,104 329 0 7
31,026 gene 28,420 254 0 7
31,026 gene 28,689 692 0 18
31,026 gene 29,391 1,346 0 40
MG757139 31,028 gene 197 21,283 0 609
31,028 gene 197 13,151 0 394
31,028 gene 21,490 836 0 29
31,028 gene 22,338 1,274 0 35
31,028 gene 23,627 4,094 0 111
31,028 gene 27,711 131 0 2
31,028 gene 27,878 131 0 1
31,028 gene 28,090 329 0 6
31,028 gene 28,406 254 0 7
31,028 gene 28,675 692 0 18
31,028 gene 29,377 1,346 0 37
MG757140 31,024 gene 209 21,283 0 609
31,024 gene 209 13,151 0 394
31,024 gene 21,502 836 0 29
31,024 gene 22,350 1,271 0 34
31,024 gene 23,636 4,094 0 111
31,024 gene 27,720 131 0 2
31,024 gene 27,887 131 0 1
31,024 gene 28,102 329 0 6
31,024 gene 28,418 254 0 7
31,024 gene 28,687 692 0 18
31,024 gene 29,389 1,346 0 37
MG757141 31,019 gene 194 21,283 0 608
31,019 gene 194 13,151 0 393
31,019 gene 21,487 836 0 29
31,019 gene 22,335 1,274 0 35
31,019 gene 23,624 4,094 0 111
31,019 gene 27,708 131 0 2
31,019 gene 27,875 131 0 1
31,019 gene 28,090 329 0 6
31,019 gene 28,406 254 0 7
31,019 gene 28,675 692 0 18
31,019 gene 29,377 1,346 0 37
MG757142 30,939 gene 108 21,283 0 607
30,939 gene 108 13,151 0 392
30,939 gene 21,401 836 0 28
30,939 gene 22,249 1,271 0 34
30,939 gene 23,535 4,094 0 111
30,939 gene 27,619 131 0 2
30,939 gene 27,786 131 0 1
30,939 gene 28,001 329 0 6
30,939 gene 28,317 254 0 7
30,939 gene 28,586 692 0 18
30,939 gene 29,288 1,346 0 37
MH043952 31,019 gene 22,352 1,274 0 34
31,019 gene 23,641 4,091 0 106
31,019 gene 28,413 254 0 7
31,019 gene 28,682 692 0 16
31,019 gene 29,384 1,346 0 41
31,019 5_UTR 1 209 0 1
31,019 3_UTR 30,728 291 0 9
MH043953 31,032 gene 22,352 1,274 0 33
31,032 gene 23,641 4,091 0 102
31,032 gene 28,432 248 0 7
31,032 gene 28,695 692 0 16
31,032 gene 29,397 1,346 0 39
31,032 5_UTR 1 209 0 1
31,032 3_UTR 30,741 291 0 11
MH043954 31,016 gene 22,352 1,274 0 33
31,016 gene 23,641 4,091 0 107
31,016 gene 28,410 254 0 7
31,016 gene 28,679 692 0 15
31,016 gene 29,381 1,346 0 40
31,016 5_UTR 1 209 0 1
31,016 3_UTR 30,725 291 0 9
MH043955 31,032 gene 22,352 1,274 0 33
31,032 gene 23,641 4,091 0 105
31,032 gene 28,426 254 0 7
31,032 gene 28,695 692 0 15
31,032 gene 29,397 1,346 0 39
31,032 5_UTR 1 209 0 1
31,032 3_UTR 30,741 291 0 9


The following HTML table columns are as follows:

Genbank Virus Id: the Gen Bank database id of the Coronaviridae virus found in various animal types.

Virus Length: the number of bases in the Coronaviridae virus.

Part Type: the type of the Coronaviridae genome part (gene, misc_feature, mat_peptide, stem_loop, or UTR).

Part Pos: first position of the Coronaviridae part in its bases.

Part Length: the number of bases comprising the Coronaviridae part.

Part Match: how many times that complete Coronaviridae part was found in the Human Gut Database (GVD) virus (rare).

Segment Matches: number of 10-base long segments of the Coronaviridae part found in the GVD virus bases.


Coronaviridae (Bovine) viruses found in
the Human Gut Virus Database (GVD)
GVD virus: (Ma_2019_SRR413675; 392,017 bases)
Corona
Virus Id
Virus
Length
Part
Type
Part
Pos
Part
Length
Part
Match
Segment
Matches
AF220295 31,100 gene 21,521 833 0 35
31,100 gene 22,366 1,274 0 55
31,100 gene 23,655 4,091 0 178
31,100 gene 28,438 254 0 12
31,100 gene 28,707 692 0 29
31,100 gene 29,409 1,346 0 36
AF391541 31,028 gene 21,504 836 0 31
31,028 gene 22,352 1,274 0 58
31,028 gene 23,641 4,091 0 177
31,028 gene 28,422 254 0 13
31,028 gene 28,691 692 0 29
31,028 gene 29,393 1,346 0 36
31,028 5_UTR 1 209 0 8
31,028 3_UTR 30,740 288 0 11
AF391542 31,028 gene 21,504 836 0 32
31,028 gene 22,352 1,274 0 57
31,028 gene 23,641 4,091 0 175
31,028 gene 28,422 254 0 13
31,028 gene 28,691 692 0 31
31,028 gene 29,393 1,346 0 36
31,028 5_UTR 1 209 0 8
31,028 3_UTR 30,740 288 0 11
DQ915164 31,076 gene 21,504 836 0 32
31,076 gene 22,352 1,274 0 57
31,076 gene 23,641 4,091 0 177
31,076 gene 28,106 329 0 13
31,076 gene 28,660 722 0 32
31,076 gene 29,392 1,346 0 36
31,076 5_UTR 1 209 0 8
31,076 3_UTR 30,994 82 0 6
EF424615 31,017 gene 211 13,151 0 576
31,017 gene 13,341 8,153 0 358
31,017 gene 21,504 836 0 33
31,017 gene 22,352 1,274 0 56
31,017 gene 23,641 4,091 0 179
31,017 gene 27,722 89 0 2
31,017 gene 27,889 137 0 4
31,017 gene 28,106 329 0 13
31,017 gene 28,422 254 0 13
31,017 gene 28,691 692 0 31
31,017 gene 29,393 1,346 0 36
EF424616 30,970 gene 195 13,151 0 577
30,970 gene 13,325 8,153 0 355
30,970 gene 21,488 836 0 32
30,970 gene 22,336 1,274 0 58
30,970 gene 23,625 4,091 0 173
30,970 gene 27,706 89 0 1
30,970 gene 27,873 137 0 4
30,970 gene 28,090 329 0 13
30,970 gene 28,406 254 0 13
30,970 gene 28,675 692 0 30
30,970 gene 29,377 1,346 0 36
EF424617 31,016 gene 195 13,151 0 573
31,016 gene 13,325 8,153 0 355
31,016 gene 21,488 836 0 32
31,016 gene 22,336 1,274 0 59
31,016 gene 23,625 4,091 0 172
31,016 gene 27,706 89 0 1
31,016 gene 27,873 137 0 4
31,016 gene 28,090 329 0 13
31,016 gene 28,406 254 0 13
31,016 gene 28,675 692 0 29
31,016 gene 29,377 1,346 0 36
EF424618 30,995 gene 195 13,151 0 573
30,995 gene 13,325 8,153 0 355
30,995 gene 21,488 836 0 32
30,995 gene 22,336 1,274 0 59
30,995 gene 23,625 4,091 0 172
30,995 gene 27,706 89 0 1
30,995 gene 27,873 137 0 4
30,995 gene 28,090 329 0 13
30,995 gene 28,406 254 0 13
30,995 gene 28,675 692 0 29
30,995 gene 29,377 1,346 0 36
EF424619 30,995 gene 195 13,151 0 565
30,995 gene 13,325 8,153 0 349
30,995 gene 21,488 836 0 28
30,995 gene 22,336 1,274 0 57
30,995 gene 23,625 4,091 0 167
30,995 gene 27,706 89 0 1
30,995 gene 27,873 137 0 4
30,995 gene 28,090 329 0 13
30,995 gene 28,406 254 0 13
30,995 gene 28,675 692 0 30
30,995 gene 29,377 1,346 0 36
EF424620 30,964 gene 195 13,151 0 577
30,964 gene 13,325 8,153 0 353
30,964 gene 21,488 836 0 32
30,964 gene 22,336 1,274 0 56
30,964 gene 23,625 4,091 0 180
30,964 gene 27,706 89 0 2
30,964 gene 27,873 137 0 5
30,964 gene 28,090 329 0 13
30,964 gene 28,406 254 0 13
30,964 gene 28,675 692 0 30
30,964 gene 29,377 1,346 0 37
NC_003045 31,028 gene 211 21,283 0 928
31,028 gene 21,504 836 0 31
31,028 gene 22,352 1,274 0 58
31,028 gene 23,641 4,091 0 177
31,028 gene 27,722 89 0 2
31,028 gene 27,889 137 0 3
31,028 gene 28,106 329 0 13
31,028 gene 28,422 254 0 13
31,028 gene 28,691 692 0 29
31,028 gene 29,393 1,346 0 36
31,028 mat_peptide 211 737 0 17
31,028 mat_peptide 949 1,814 0 92
31,028 mat_peptide 2,764 5,696 0 260
31,028 mat_peptide 8,461 1,487 0 69
31,028 mat_peptide 9,949 908 0 42
31,028 mat_peptide 10,858 860 0 44
31,028 mat_peptide 11,719 266 0 13
31,028 mat_peptide 11,986 590 0 27
31,028 mat_peptide 12,577 329 0 18
31,028 mat_peptide 12,907 410 0 18
31,028 mat_peptide 16,101 1,808 0 71
31,028 mat_peptide 17,910 1,562 0 61
31,028 mat_peptide 19,473 1,121 0 49
31,028 mat_peptide 20,595 896 0 40
31,028 5_UTR 1 209 0 8
31,028 3_UTR 30,740 288 0 11
BCU00735 31,032 gene 22,337 1,289 0 52
31,032 gene 23,641 4,091 0 176
31,032 gene 28,426 254 0 12
31,032 gene 28,695 692 0 29
31,032 gene 29,397 1,346 0 36
31,032 mat_peptide 22,406 1,217 0 55
31,032 mat_peptide 23,692 4,037 0 180
31,032 5_UTR 1 209 0 8
31,032 3_UTR 30,741 291 0 9
KX982264 30,847 gene 146 21,274 0 922
30,847 gene 146 13,142 0 570
30,847 gene 21,430 836 0 32
30,847 gene 22,278 1,274 0 58
30,847 gene 23,567 4,091 0 176
30,847 gene 28,346 254 0 13
30,847 gene 28,615 692 0 32
30,847 gene 29,317 1,346 0 37
MG757138 31,026 gene 208 21,283 0 909
31,026 gene 208 13,151 0 562
31,026 gene 21,501 836 0 31
31,026 gene 22,349 1,274 0 57
31,026 gene 23,638 4,091 0 176
31,026 gene 27,719 131 0 3
31,026 gene 27,886 134 0 7
31,026 gene 28,104 329 0 11
31,026 gene 28,420 254 0 13
31,026 gene 28,689 692 0 32
31,026 gene 29,391 1,346 0 38
MG757139 31,028 gene 197 21,283 0 908
31,028 gene 197 13,151 0 561
31,028 gene 21,490 836 0 32
31,028 gene 22,338 1,274 0 58
31,028 gene 23,627 4,094 0 184
31,028 gene 27,711 131 0 3
31,028 gene 27,878 131 0 6
31,028 gene 28,090 329 0 12
31,028 gene 28,406 254 0 13
31,028 gene 28,675 692 0 32
31,028 gene 29,377 1,346 0 36
MG757140 31,024 gene 209 21,283 0 908
31,024 gene 209 13,151 0 561
31,024 gene 21,502 836 0 32
31,024 gene 22,350 1,271 0 56
31,024 gene 23,636 4,094 0 184
31,024 gene 27,720 131 0 3
31,024 gene 27,887 131 0 6
31,024 gene 28,102 329 0 12
31,024 gene 28,418 254 0 13
31,024 gene 28,687 692 0 32
31,024 gene 29,389 1,346 0 36
MG757141 31,019 gene 194 21,283 0 908
31,019 gene 194 13,151 0 561
31,019 gene 21,487 836 0 32
31,019 gene 22,335 1,274 0 58
31,019 gene 23,624 4,094 0 184
31,019 gene 27,708 131 0 3
31,019 gene 27,875 131 0 6
31,019 gene 28,090 329 0 12
31,019 gene 28,406 254 0 13
31,019 gene 28,675 692 0 32
31,019 gene 29,377 1,346 0 36
MG757142 30,939 gene 108 21,283 0 906
30,939 gene 108 13,151 0 559
30,939 gene 21,401 836 0 32
30,939 gene 22,249 1,271 0 56
30,939 gene 23,535 4,094 0 184
30,939 gene 27,619 131 0 3
30,939 gene 27,786 131 0 6
30,939 gene 28,001 329 0 12
30,939 gene 28,317 254 0 13
30,939 gene 28,586 692 0 32
30,939 gene 29,288 1,346 0 36
MH043952 31,019 gene 22,352 1,274 0 55
31,019 gene 23,641 4,091 0 176
31,019 gene 28,413 254 0 13
31,019 gene 28,682 692 0 31
31,019 gene 29,384 1,346 0 34
31,019 5_UTR 1 209 0 8
31,019 3_UTR 30,728 291 0 10
MH043953 31,032 gene 22,352 1,274 0 56
31,032 gene 23,641 4,091 0 177
31,032 gene 28,432 248 0 11
31,032 gene 28,695 692 0 31
31,032 gene 29,397 1,346 0 36
31,032 5_UTR 1 209 0 8
31,032 3_UTR 30,741 291 0 9
MH043954 31,016 gene 22,352 1,274 0 58
31,016 gene 23,641 4,091 0 179
31,016 gene 28,410 254 0 13
31,016 gene 28,679 692 0 31
31,016 gene 29,381 1,346 0 36
31,016 5_UTR 1 209 0 8
31,016 3_UTR 30,725 291 0 10
MH043955 31,032 gene 22,352 1,274 0 58
31,032 gene 23,641 4,091 0 181
31,032 gene 28,426 254 0 13
31,032 gene 28,695 692 0 30
31,032 gene 29,397 1,346 0 35
31,032 5_UTR 1 209 0 8
31,032 3_UTR 30,741 291 0 9


The following HTML table columns are as follows:

Genbank Virus Id: the Gen Bank database id of the Coronaviridae virus found in various animal types.

Virus Length: the number of bases in the Coronaviridae virus.

Part Type: the type of the Coronaviridae genome part (gene, misc_feature, mat_peptide, stem_loop, or UTR).

Part Pos: first position of the Coronaviridae part in its bases.

Part Length: the number of bases comprising the Coronaviridae part.

Part Match: how many times that complete Coronaviridae part was found in the Human Gut Database (GVD) virus (rare).

Segment Matches: number of 10-base long segments of the Coronaviridae part found in the GVD virus bases.


Coronaviridae (Bovine) viruses found in
the Human Gut Virus Database (GVD)
GVD virus: (Shkoporov_2019_SRR9161502; 293,130 bases)
Corona
Virus Id
Virus
Length
Part
Type
Part
Pos
Part
Length
Part
Match
Segment
Matches
AF220295 31,100 gene 21,521 833 0 33
31,100 gene 22,366 1,274 0 51
31,100 gene 23,655 4,091 0 163
31,100 gene 28,438 254 0 9
31,100 gene 28,707 692 0 20
31,100 gene 29,409 1,346 0 36
AF391541 31,028 gene 21,504 836 0 38
31,028 gene 22,352 1,274 0 55
31,028 gene 23,641 4,091 0 163
31,028 gene 28,422 254 0 10
31,028 gene 28,691 692 0 21
31,028 gene 29,393 1,346 0 33
31,028 5_UTR 1 209 0 6
31,028 3_UTR 30,740 288 0 8
AF391542 31,028 gene 21,504 836 0 37
31,028 gene 22,352 1,274 0 56
31,028 gene 23,641 4,091 0 166
31,028 gene 28,422 254 0 10
31,028 gene 28,691 692 0 21
31,028 gene 29,393 1,346 0 33
31,028 5_UTR 1 209 0 6
31,028 3_UTR 30,740 288 0 8
DQ915164 31,076 gene 21,504 836 0 39
31,076 gene 22,352 1,274 0 54
31,076 gene 23,641 4,091 0 164
31,076 gene 28,106 329 0 13
31,076 gene 28,660 722 0 22
31,076 gene 29,392 1,346 0 33
31,076 5_UTR 1 209 0 6
31,076 3_UTR 30,994 82 0 2
EF424615 31,017 gene 211 13,151 0 503
31,017 gene 13,341 8,153 0 304
31,017 gene 21,504 836 0 40
31,017 gene 22,352 1,274 0 55
31,017 gene 23,641 4,091 0 169
31,017 gene 27,722 89 0 3
31,017 gene 27,889 137 0 4
31,017 gene 28,106 329 0 13
31,017 gene 28,422 254 0 10
31,017 gene 28,691 692 0 23
31,017 gene 29,393 1,346 0 34
EF424616 30,970 gene 195 13,151 0 506
30,970 gene 13,325 8,153 0 298
30,970 gene 21,488 836 0 39
30,970 gene 22,336 1,274 0 56
30,970 gene 23,625 4,091 0 164
30,970 gene 27,706 89 0 4
30,970 gene 27,873 137 0 5
30,970 gene 28,090 329 0 13
30,970 gene 28,406 254 0 10
30,970 gene 28,675 692 0 21
30,970 gene 29,377 1,346 0 33
EF424617 31,016 gene 195 13,151 0 503
31,016 gene 13,325 8,153 0 301
31,016 gene 21,488 836 0 39
31,016 gene 22,336 1,274 0 55
31,016 gene 23,625 4,091 0 163
31,016 gene 27,706 89 0 4
31,016 gene 27,873 137 0 5
31,016 gene 28,090 329 0 13
31,016 gene 28,406 254 0 10
31,016 gene 28,675 692 0 21
31,016 gene 29,377 1,346 0 35
EF424618 30,995 gene 195 13,151 0 501
30,995 gene 13,325 8,153 0 301
30,995 gene 21,488 836 0 39
30,995 gene 22,336 1,274 0 55
30,995 gene 23,625 4,091 0 163
30,995 gene 27,706 89 0 4
30,995 gene 27,873 137 0 5
30,995 gene 28,090 329 0 13
30,995 gene 28,406 254 0 10
30,995 gene 28,675 692 0 21
30,995 gene 29,377 1,346 0 35
EF424619 30,995 gene 195 13,151 0 496
30,995 gene 13,325 8,153 0 299
30,995 gene 21,488 836 0 35
30,995 gene 22,336 1,274 0 55
30,995 gene 23,625 4,091 0 158
30,995 gene 27,706 89 0 2
30,995 gene 27,873 137 0 4
30,995 gene 28,090 329 0 13
30,995 gene 28,406 254 0 10
30,995 gene 28,675 692 0 21
30,995 gene 29,377 1,346 0 33
EF424620 30,964 gene 195 13,151 0 501
30,964 gene 13,325 8,153 0 302
30,964 gene 21,488 836 0 39
30,964 gene 22,336 1,274 0 55
30,964 gene 23,625 4,091 0 172
30,964 gene 27,706 89 0 3
30,964 gene 27,873 137 0 5
30,964 gene 28,090 329 0 13
30,964 gene 28,406 254 0 10
30,964 gene 28,675 692 0 21
30,964 gene 29,377 1,346 0 33
NC_003045 31,028 gene 211 21,283 0 803
31,028 gene 21,504 836 0 38
31,028 gene 22,352 1,274 0 55
31,028 gene 23,641 4,091 0 163
31,028 gene 27,722 89 0 3
31,028 gene 27,889 137 0 4
31,028 gene 28,106 329 0 13
31,028 gene 28,422 254 0 10
31,028 gene 28,691 692 0 21
31,028 gene 29,393 1,346 0 33
31,028 mat_peptide 211 737 0 15
31,028 mat_peptide 949 1,814 0 73
31,028 mat_peptide 2,764 5,696 0 230
31,028 mat_peptide 8,461 1,487 0 51
31,028 mat_peptide 9,949 908 0 42
31,028 mat_peptide 10,858 860 0 36
31,028 mat_peptide 11,719 266 0 10
31,028 mat_peptide 11,986 590 0 22
31,028 mat_peptide 12,577 329 0 13
31,028 mat_peptide 12,907 410 0 12
31,028 mat_peptide 16,101 1,808 0 68
31,028 mat_peptide 17,910 1,562 0 55
31,028 mat_peptide 19,473 1,121 0 40
31,028 mat_peptide 20,595 896 0 37
31,028 5_UTR 1 209 0 6
31,028 3_UTR 30,740 288 0 8
BCU00735 31,032 gene 22,337 1,289 0 39
31,032 gene 23,641 4,091 0 163
31,032 gene 28,426 254 0 9
31,032 gene 28,695 692 0 20
31,032 gene 29,397 1,346 0 36
31,032 mat_peptide 22,406 1,217 0 43
31,032 mat_peptide 23,692 4,037 0 155
31,032 5_UTR 1 209 0 6
31,032 3_UTR 30,741 291 0 9
KX982264 30,847 gene 146 21,274 0 801
30,847 gene 146 13,142 0 484
30,847 gene 21,430 836 0 37
30,847 gene 22,278 1,274 0 54
30,847 gene 23,567 4,091 0 160
30,847 gene 28,346 254 0 10
30,847 gene 28,615 692 0 22
30,847 gene 29,317 1,346 0 32
MG757138 31,026 gene 208 21,283 0 806
31,026 gene 208 13,151 0 502
31,026 gene 21,501 836 0 36
31,026 gene 22,349 1,274 0 51
31,026 gene 23,638 4,091 0 160
31,026 gene 27,719 131 0 6
31,026 gene 27,886 134 0 2
31,026 gene 28,104 329 0 11
31,026 gene 28,420 254 0 10
31,026 gene 28,689 692 0 21
31,026 gene 29,391 1,346 0 34
MG757139 31,028 gene 197 21,283 0 807
31,028 gene 197 13,151 0 502
31,028 gene 21,490 836 0 37
31,028 gene 22,338 1,274 0 53
31,028 gene 23,627 4,094 0 159
31,028 gene 27,711 131 0 6
31,028 gene 27,878 131 0 5
31,028 gene 28,090 329 0 12
31,028 gene 28,406 254 0 10
31,028 gene 28,675 692 0 21
31,028 gene 29,377 1,346 0 32
MG757140 31,024 gene 209 21,283 0 807
31,024 gene 209 13,151 0 502
31,024 gene 21,502 836 0 37
31,024 gene 22,350 1,271 0 47
31,024 gene 23,636 4,094 0 159
31,024 gene 27,720 131 0 6
31,024 gene 27,887 131 0 5
31,024 gene 28,102 329 0 12
31,024 gene 28,418 254 0 10
31,024 gene 28,687 692 0 21
31,024 gene 29,389 1,346 0 33
MG757141 31,019 gene 194 21,283 0 807
31,019 gene 194 13,151 0 502
31,019 gene 21,487 836 0 37
31,019 gene 22,335 1,274 0 53
31,019 gene 23,624 4,094 0 159
31,019 gene 27,708 131 0 6
31,019 gene 27,875 131 0 5
31,019 gene 28,090 329 0 12
31,019 gene 28,406 254 0 10
31,019 gene 28,675 692 0 21
31,019 gene 29,377 1,346 0 33
MG757142 30,939 gene 108 21,283 0 806
30,939 gene 108 13,151 0 500
30,939 gene 21,401 836 0 36
30,939 gene 22,249 1,271 0 47
30,939 gene 23,535 4,094 0 159
30,939 gene 27,619 131 0 6
30,939 gene 27,786 131 0 5
30,939 gene 28,001 329 0 12
30,939 gene 28,317 254 0 10
30,939 gene 28,586 692 0 21
30,939 gene 29,288 1,346 0 33
MH043952 31,019 gene 22,352 1,274 0 55
31,019 gene 23,641 4,091 0 164
31,019 gene 28,413 254 0 10
31,019 gene 28,682 692 0 21
31,019 gene 29,384 1,346 0 34
31,019 5_UTR 1 209 0 6
31,019 3_UTR 30,728 291 0 8
MH043953 31,032 gene 22,352 1,274 0 54
31,032 gene 23,641 4,091 0 164
31,032 gene 28,432 248 0 10
31,032 gene 28,695 692 0 21
31,032 gene 29,397 1,346 0 36
31,032 5_UTR 1 209 0 6
31,032 3_UTR 30,741 291 0 8
MH043954 31,016 gene 22,352 1,274 0 55
31,016 gene 23,641 4,091 0 166
31,016 gene 28,410 254 0 10
31,016 gene 28,679 692 0 21
31,016 gene 29,381 1,346 0 34
31,016 5_UTR 1 209 0 6
31,016 3_UTR 30,725 291 0 8
MH043955 31,032 gene 22,352 1,274 0 56
31,032 gene 23,641 4,091 0 166
31,032 gene 28,426 254 0 10
31,032 gene 28,695 692 0 21
31,032 gene 29,397 1,346 0 33
31,032 5_UTR 1 209 0 6
31,032 3_UTR 30,741 291 0 9


The following HTML table columns are as follows:

Genbank Virus Id: the Gen Bank database id of the Coronaviridae virus found in various animal types.

Virus Length: the number of bases in the Coronaviridae virus.

Part Type: the type of the Coronaviridae genome part (gene, misc_feature, mat_peptide, stem_loop, or UTR).

Part Pos: first position of the Coronaviridae part in its bases.

Part Length: the number of bases comprising the Coronaviridae part.

Part Match: how many times that complete Coronaviridae part was found in the Human Gut Database (GVD) virus (rare).

Segment Matches: number of 10-base long segments of the Coronaviridae part found in the GVD virus bases.


Coronaviridae (Bovine) viruses found in
the Human Gut Virus Database (GVD)
GVD virus: (Shkoporov_2019_SRR9161502; 293,130 bases)
Corona
Virus Id
Virus
Length
Part
Type
Part
Pos
Part
Length
Part
Match
Segment
Matches
AF220295 31,100 gene 21,521 833 0 33
31,100 gene 22,366 1,274 0 51
31,100 gene 23,655 4,091 0 163
31,100 gene 28,438 254 0 9
31,100 gene 28,707 692 0 20
31,100 gene 29,409 1,346 0 36
AF391541 31,028 gene 21,504 836 0 38
31,028 gene 22,352 1,274 0 55
31,028 gene 23,641 4,091 0 163
31,028 gene 28,422 254 0 10
31,028 gene 28,691 692 0 21
31,028 gene 29,393 1,346 0 33
31,028 5_UTR 1 209 0 6
31,028 3_UTR 30,740 288 0 8
AF391542 31,028 gene 21,504 836 0 37
31,028 gene 22,352 1,274 0 56
31,028 gene 23,641 4,091 0 166
31,028 gene 28,422 254 0 10
31,028 gene 28,691 692 0 21
31,028 gene 29,393 1,346 0 33
31,028 5_UTR 1 209 0 6
31,028 3_UTR 30,740 288 0 8
DQ915164 31,076 gene 21,504 836 0 39
31,076 gene 22,352 1,274 0 54
31,076 gene 23,641 4,091 0 164
31,076 gene 28,106 329 0 13
31,076 gene 28,660 722 0 22
31,076 gene 29,392 1,346 0 33
31,076 5_UTR 1 209 0 6
31,076 3_UTR 30,994 82 0 2
EF424615 31,017 gene 211 13,151 0 503
31,017 gene 13,341 8,153 0 304
31,017 gene 21,504 836 0 40
31,017 gene 22,352 1,274 0 55
31,017 gene 23,641 4,091 0 169
31,017 gene 27,722 89 0 3
31,017 gene 27,889 137 0 4
31,017 gene 28,106 329 0 13
31,017 gene 28,422 254 0 10
31,017 gene 28,691 692 0 23
31,017 gene 29,393 1,346 0 34
EF424616 30,970 gene 195 13,151 0 506
30,970 gene 13,325 8,153 0 298
30,970 gene 21,488 836 0 39
30,970 gene 22,336 1,274 0 56
30,970 gene 23,625 4,091 0 164
30,970 gene 27,706 89 0 4
30,970 gene 27,873 137 0 5
30,970 gene 28,090 329 0 13
30,970 gene 28,406 254 0 10
30,970 gene 28,675 692 0 21
30,970 gene 29,377 1,346 0 33
EF424617 31,016 gene 195 13,151 0 503
31,016 gene 13,325 8,153 0 301
31,016 gene 21,488 836 0 39
31,016 gene 22,336 1,274 0 55
31,016 gene 23,625 4,091 0 163
31,016 gene 27,706 89 0 4
31,016 gene 27,873 137 0 5
31,016 gene 28,090 329 0 13
31,016 gene 28,406 254 0 10
31,016 gene 28,675 692 0 21
31,016 gene 29,377 1,346 0 35
EF424618 30,995 gene 195 13,151 0 501
30,995 gene 13,325 8,153 0 301
30,995 gene 21,488 836 0 39
30,995 gene 22,336 1,274 0 55
30,995 gene 23,625 4,091 0 163
30,995 gene 27,706 89 0 4
30,995 gene 27,873 137 0 5
30,995 gene 28,090 329 0 13
30,995 gene 28,406 254 0 10
30,995 gene 28,675 692 0 21
30,995 gene 29,377 1,346 0 35
EF424619 30,995 gene 195 13,151 0 496
30,995 gene 13,325 8,153 0 299
30,995 gene 21,488 836 0 35
30,995 gene 22,336 1,274 0 55
30,995 gene 23,625 4,091 0 158
30,995 gene 27,706 89 0 2
30,995 gene 27,873 137 0 4
30,995 gene 28,090 329 0 13
30,995 gene 28,406 254 0 10
30,995 gene 28,675 692 0 21
30,995 gene 29,377 1,346 0 33
EF424620 30,964 gene 195 13,151 0 501
30,964 gene 13,325 8,153 0 302
30,964 gene 21,488 836 0 39
30,964 gene 22,336 1,274 0 55
30,964 gene 23,625 4,091 0 172
30,964 gene 27,706 89 0 3
30,964 gene 27,873 137 0 5
30,964 gene 28,090 329 0 13
30,964 gene 28,406 254 0 10
30,964 gene 28,675 692 0 21
30,964 gene 29,377 1,346 0 33
NC_003045 31,028 gene 211 21,283 0 803
31,028 gene 21,504 836 0 38
31,028 gene 22,352 1,274 0 55
31,028 gene 23,641 4,091 0 163
31,028 gene 27,722 89 0 3
31,028 gene 27,889 137 0 4
31,028 gene 28,106 329 0 13
31,028 gene 28,422 254 0 10
31,028 gene 28,691 692 0 21
31,028 gene 29,393 1,346 0 33
31,028 mat_peptide 211 737 0 15
31,028 mat_peptide 949 1,814 0 73
31,028 mat_peptide 2,764 5,696 0 230
31,028 mat_peptide 8,461 1,487 0 51
31,028 mat_peptide 9,949 908 0 42
31,028 mat_peptide 10,858 860 0 36
31,028 mat_peptide 11,719 266 0 10
31,028 mat_peptide 11,986 590 0 22
31,028 mat_peptide 12,577 329 0 13
31,028 mat_peptide 12,907 410 0 12
31,028 mat_peptide 16,101 1,808 0 68
31,028 mat_peptide 17,910 1,562 0 55
31,028 mat_peptide 19,473 1,121 0 40
31,028 mat_peptide 20,595 896 0 37
31,028 5_UTR 1 209 0 6
31,028 3_UTR 30,740 288 0 8
BCU00735 31,032 gene 22,337 1,289 0 39
31,032 gene 23,641 4,091 0 163
31,032 gene 28,426 254 0 9
31,032 gene 28,695 692 0 20
31,032 gene 29,397 1,346 0 36
31,032 mat_peptide 22,406 1,217 0 43
31,032 mat_peptide 23,692 4,037 0 155
31,032 5_UTR 1 209 0 6
31,032 3_UTR 30,741 291 0 9
KX982264 30,847 gene 146 21,274 0 801
30,847 gene 146 13,142 0 484
30,847 gene 21,430 836 0 37
30,847 gene 22,278 1,274 0 54
30,847 gene 23,567 4,091 0 160
30,847 gene 28,346 254 0 10
30,847 gene 28,615 692 0 22
30,847 gene 29,317 1,346 0 32
MG757138 31,026 gene 208 21,283 0 806
31,026 gene 208 13,151 0 502
31,026 gene 21,501 836 0 36
31,026 gene 22,349 1,274 0 51
31,026 gene 23,638 4,091 0 160
31,026 gene 27,719 131 0 6
31,026 gene 27,886 134 0 2
31,026 gene 28,104 329 0 11
31,026 gene 28,420 254 0 10
31,026 gene 28,689 692 0 21
31,026 gene 29,391 1,346 0 34
MG757139 31,028 gene 197 21,283 0 807
31,028 gene 197 13,151 0 502
31,028 gene 21,490 836 0 37
31,028 gene 22,338 1,274 0 53
31,028 gene 23,627 4,094 0 159
31,028 gene 27,711 131 0 6
31,028 gene 27,878 131 0 5
31,028 gene 28,090 329 0 12
31,028 gene 28,406 254 0 10
31,028 gene 28,675 692 0 21
31,028 gene 29,377 1,346 0 32
MG757140 31,024 gene 209 21,283 0 807
31,024 gene 209 13,151 0 502
31,024 gene 21,502 836 0 37
31,024 gene 22,350 1,271 0 47
31,024 gene 23,636 4,094 0 159
31,024 gene 27,720 131 0 6
31,024 gene 27,887 131 0 5
31,024 gene 28,102 329 0 12
31,024 gene 28,418 254 0 10
31,024 gene 28,687 692 0 21
31,024 gene 29,389 1,346 0 33
MG757141 31,019 gene 194 21,283 0 807
31,019 gene 194 13,151 0 502
31,019 gene 21,487 836 0 37
31,019 gene 22,335 1,274 0 53
31,019 gene 23,624 4,094 0 159
31,019 gene 27,708 131 0 6
31,019 gene 27,875 131 0 5
31,019 gene 28,090 329 0 12
31,019 gene 28,406 254 0 10
31,019 gene 28,675 692 0 21
31,019 gene 29,377 1,346 0 33
MG757142 30,939 gene 108 21,283 0 806
30,939 gene 108 13,151 0 500
30,939 gene 21,401 836 0 36
30,939 gene 22,249 1,271 0 47
30,939 gene 23,535 4,094 0 159
30,939 gene 27,619 131 0 6
30,939 gene 27,786 131 0 5
30,939 gene 28,001 329 0 12
30,939 gene 28,317 254 0 10
30,939 gene 28,586 692 0 21
30,939 gene 29,288 1,346 0 33
MH043952 31,019 gene 22,352 1,274 0 55
31,019 gene 23,641 4,091 0 164
31,019 gene 28,413 254 0 10
31,019 gene 28,682 692 0 21
31,019 gene 29,384 1,346 0 34
31,019 5_UTR 1 209 0 6
31,019 3_UTR 30,728 291 0 8
MH043953 31,032 gene 22,352 1,274 0 54
31,032 gene 23,641 4,091 0 164
31,032 gene 28,432 248 0 10
31,032 gene 28,695 692 0 21
31,032 gene 29,397 1,346 0 36
31,032 5_UTR 1 209 0 6
31,032 3_UTR 30,741 291 0 8
MH043954 31,016 gene 22,352 1,274 0 55
31,016 gene 23,641 4,091 0 166
31,016 gene 28,410 254 0 10
31,016 gene 28,679 692 0 21
31,016 gene 29,381 1,346 0 34
31,016 5_UTR 1 209 0 6
31,016 3_UTR 30,725 291 0 8
MH043955 31,032 gene 22,352 1,274 0 56
31,032 gene 23,641 4,091 0 166
31,032 gene 28,426 254 0 10
31,032 gene 28,695 692 0 21
31,032 gene 29,397 1,346 0 33
31,032 5_UTR 1 209 0 6
31,032 3_UTR 30,741 291 0 9