This is an appendix to: Quantum Biology - 11
36) Codon Usage Bias:
About: Vesicular stomatitis Indiana virus, complete genome (11161bp)
VERSION: J02428.1
CODONS & LOCATIONS:
GCT: 35,275,433,482,528,540,649,739,849,976,984,1066,1197,
1309,1367,1489,1636,1652,1731,1809,2136,2355,2364,
2508,2574,2664,2702,2765,2805,2940,2956,3205,3276,
3306,3337,3437,3448,3527,3650,3707,3756,3843,3861,
3906,4033,4041,4068,4131,4134,4321,4329,4362,4365,
4412,4433,4465,4671,4841,5130,5195,5249,5269,5349,
5381,5467,5620,5915,5977,6032,6035,6076,6239,6282,
6830,6848,6938,7157,7170,7187,7199,7208,7259,7289,
7332,7484,7567,7598,7647,7726,7816,7979,7988,8183,
8267,8551,8558,8707,8798,8944,8970,8999,9373,9394,
9479,9497,9522,9604,9637,9674,9747,9764,9984,9991,
10438,10478,10631,10647,10654,10736,10789,10909
GCT count: 121
GCC: 236,397,465,510,588,694,857,874,888,949,1009,1017,
1087,1170,1280,1545,1665,1773,1840,1907,2040,2128,
2141,2505,2601,2672,2862,2875,2926,2999,3085,3099,
3196,3243,3260,3489,3598,3777,3867,3883,3976,4473,
4681,4790,4979,5048,5647,6025,6438,6498,6533,6588,
6609,7226,7358,7427,7538,8016,8179,8227,8405,8436,
8624,8686,8873,8973,9013,9017,9207,9334,9613,9657,
9845,9856,9866,10044,10349,10481,10524,10823
GCC count: 80
GCA: 121,148,289,355,448,497,554,652,742,748,767,826,966,
1000,1051,1072,1096,1165,1178,1245,1261,1275,1301,
1480,1536,1561,1564,1621,1641,1681,1746,1794,1825,
1833,1858,1865,1876,1972,2029,2316,2344,2502,2544,
2619,2659,2717,2802,2895,3124,3221,3238,3285,3400,
3409,3474,3495,3583,3586,3626,3730,3772,3781,3788,
3796,3800,3864,3991,4206,4370,4543,4556,4624,4727,
4821,5005,5090,5136,5295,5331,5458,5506,5563,5610,
5633,5708,5891,5897,5903,6064,6217,6341,6464,6521,
6528,6751,6784,6863,6888,6980,7036,7043,7279,7336,
7398,7495,7514,7694,7791,7808,8093,8131,8224,8244,
8321,8377,8380,8450,8460,8465,8468,8486,8543,8579,
8792,8803,8820,8963,9023,9159,9319,9377,9483,9767,
9787,9792,9980,10078,10096,10154,10322,10355,10505,
10613,10700,10711,10762
GCA count: 146
GCG: 407,1252,1453,2170,2610,2653,2904,4002,5127,5279,6376,
6449,6700,7616,8358,8852,9838,10143,10475,10538,10951
GCG count: 21
CGT: 598,698,936,1417,1441,1830,1958,2475,2479,2553,3199,
3947,4220,4827,5107,5793,5962,6421,6919,7079,7195,
7295,7441,7841,8155,8273,8547,8736,8912,9164,10224,
10548,10874,10916,11159
CGT count: 35
CGC: (0)
CGA: 2,800,817,900,1012,1157,1191,1229,1476,1486,1743,1814,
1817,2110,2220,2359,2396,2416,2758,2783,2885,3005,
3058,3349,3372,3421,3836,4124,4307,4340,4430,4524,
4599,4744,4756,4759,4813,4914,4923,5322,5414,5604,
5720,6100,6117,6176,6186,6397,6454,6550,6599,6637,
6740,6903,6912,7024,7071,7118,7487,7531,7547,7654,
8075,8308,8421,8527,8924,9112,9123,9153,9582,9776,
9894,9971,10059,10189,10267,10282,10581,10590,10722,
10805,10862,10988,11038
CGA count: 85
CGG: 246,304,336,348,369,428,708,777,1146,1200,1712,1762,
1880,1919,2097,2106,2273,2461,2537,2972,3290,3484,
3575,3701,4061,4157,5463,5918,7329,7395,7813,7850,
8143,8168,8429,8587,8950,8987,9031,9490,9643,9689,
9751,10028,10082,10185,10450,10461,10831,11006
CGG count: 50
AGA: 5,42,80,160,173,210,217,321,417,439,490,520,591,703,
724,732,789,792,861,988,997,1116,1134,1182,1212,1222,
1258,1285,1289,1292,1317,1346,1389,1461,1467,1472,
1518,1533,1581,1593,1602,1632,1671,1754,1776,1791,
1884,1910,1968,1980,2000,2024,2077,2082,2124,2146,
2173,2192,2212,2263,2266,2293,2302,2333,2427,2434,
2466,2484,2495,2636,2689,2714,2724,2727,2853,2857,
3052,3209,3265,3392,3548,3695,3704,3741,3813,3870,
3887,3916,3952,3980,3999,4105,4110,4119,4149,4181,
4217,4358,4387,4439,4564,4569,4573,4583,4631,4677,
4752,4780,4796,4938,4959,5001,5086,5115,5168,5303,
5306,5371,5391,5437,5483,5488,5503,5509,5537,5545,
5559,5636,5688,5729,5745,5798,5821,5839,5868,5872,
5971,6013,6046,6055,6109,6157,6253,6265,6276,6286,
6324,6347,6379,6411,6477,6484,6641,6660,6686,6691,
6760,6824,6839,6906,6925,6966,7029,7091,7099,7107,
7212,7262,7318,7323,7424,7435,7447,7466,7506,7561,
7573,7576,7629,7661,7717,7730,7766,7863,7946,8000,
8053,8080,8140,8264,8279,8362,8393,8457,8494,8515,
8520,8582,8608,8642,8650,8653,8692,8712,8746,8757,
8770,8784,8845,8858,8918,8947,8960,8990,9009,9092,
9107,9118,9135,9185,9233,9265,9280,9352,9357,9368,
9398,9406,9418,9463,9473,9514,9548,9600,9607,9620,
9742,9817,9871,9886,10056,10067,10116,10140,10149,
10182,10204,10257,10336,10352,10359,10431,10499,10571,
10603,10668,10672,10778,10798,10813,10844,10893,10955,
10985,10999,11002,11025,11054,11075,11115
AGA count: 270
AGG: 39,128,170,296,594,1003,1077,1149,1458,1611,1625,1661,
1688,1887,1901,1931,2100,2281,2288,2309,2627,2679,
2741,2752,3158,3403,3428,3508,3545,3640,3647,3724,
3727,3734,3824,3850,3890,3943,4055,4185,4248,4259,
4333,4442,4493,4895,5056,5163,5259,5282,5339,5374,
5449,5453,5704,6152,6210,6279,6316,6321,6502,6572,
6619,6754,6775,6790,6868,6933,6991,6997,7006,7387,
7412,7503,7635,7673,7680,7689,7877,7901,7908,7930,
7949,8110,8191,8237,8398,8414,8477,8504,8720,8731,
8773,8830,8877,8908,8938,9034,9097,9222,9403,9444,
9501,9539,9650,9722,9754,9796,9826,9841,9880,9883,
9950,10099,10249,10341,10362,10387,10576,10727,10750,
10753,10963,11072
AGG count: 124
AAT: 57,63,84,124,140,164,190,242,250,258,339,366,458,507,
515,547,551,558,565,622,631,642,689,771,780,834,843,
864,1006,1124,1162,1296,1328,1339,1402,1501,1596,1606,
1736,1799,1844,1852,1964,2063,2164,2180,2238,2296,
2305,2369,2377,2422,2437,2456,2472,2540,2567,2592,
2706,2736,2771,2829,2839,2867,2935,2966,2992,3014,
3120,3171,3183,3216,3225,3233,3257,3313,3397,3441,
3538,3580,3785,3880,3938,3995,4013,4079,4083,4096,
4139,4160,4226,4236,4422,4427,4499,4549,4618,4652,
4686,4704,4766,4775,4800,4808,4835,4850,4856,4867,
4886,4899,4904,4982,5010,5029,5039,5095,5146,5151,
5188,5239,5246,5265,5407,5428,5528,5551,5570,5593,
5628,5640,5661,5678,5713,5749,5844,5942,5966,6017,
6060,6084,6094,6121,6145,6149,6182,6245,6301,6361,
6372,6391,6445,6536,6555,6560,6634,6651,6680,6725,
6806,6835,6875,6909,6944,6949,6959,6962,6970,6988,
7019,7055,7066,7136,7144,7160,7165,7184,7219,7223,
7241,7299,7353,7606,7644,7651,7747,7751,7779,7785,
7835,7881,7963,8007,8056,8117,8208,8563,8723,8777,
8862,8956,8980,9057,9188,9198,9204,9214,9228,9249,
9322,9380,9432,9469,9506,9509,9543,9556,9565,9629,
9646,9660,9706,9712,9782,9799,9806,9891,9905,9924,
9997,10006,10012,10051,10070,10108,10162,10260,10264,
10277,10298,10302,10344,10401,10444,10488,10562,10609,
10619,10828,10854,10880,10889,10904,10928,10938,10946,
10966,10974,10982,11065
AAT count: 259
AAC: 10,14,45,51,94,113,271,343,501,569,578,683,711,774,
814,943,1100,1120,1219,1226,1382,1386,1589,1721,1914,
1948,2018,2209,2632,2948,2963,3010,3045,3049,3150,
3162,3359,3415,3424,3431,3612,3620,3663,3747,3764,
3983,4050,4058,4172,4189,4596,4612,4628,4656,4719,
4723,4966,4993,5098,5142,5273,5394,5417,5492,5601,
5761,5860,5934,6069,6168,6330,6460,6563,6584,6710,
6713,6730,6842,7444,7526,7552,7582,7592,7619,7666,
7676,7853,7935,8035,8070,8102,8200,8304,8316,8339,
8353,8754,9020,9142,9562,9667,9874,9913,10126,10159,
10201,10272,10313,10424,10556,10636,10689,10835,10865,
10958,11045,11083,11101
AAC count: 118
GAT: 151,221,316,361,451,535,561,610,807,829,846,877,897,
908,1021,1138,1237,1242,1399,1447,1464,1522,1567,1570,
1684,1696,1944,2059,2312,2399,2412,2523,2622,2787,
2813,2820,2847,2879,2916,3055,3296,3330,3469,3500,
3534,3558,3657,3839,3846,3927,3956,3963,4026,4163,
4197,4283,4380,4383,4404,4663,4769,4844,4874,4877,
4891,4931,4946,5014,5036,5045,5335,5399,5443,5587,
5623,5699,5741,5768,5782,5790,5879,5909,5945,5987,
6079,6268,6272,6290,6293,6296,6406,6545,6697,6721,
6872,7015,7046,7087,7110,7231,7273,7276,7283,7420,
7534,7684,7721,7886,7889,7894,7953,8146,8257,8282,
8482,8507,8593,8656,8749,8823,9040,9049,9053,9167,
9178,9493,9610,9757,9897,10001,10016,10031,10091,10412,
10496,10508,10627,10663,10784,10840,10925,10969,10978,
11017,11057,11107
GAT count: 146
GAC: 91,379,403,454,543,601,625,658,758,868,972,1024,1090,
1324,1331,1576,1675,1767,2010,2337,2373,2403,2774,
3072,3228,3346,3512,3633,3678,4200,4231,4288,4302,
4507,4647,4784,4883,5081,5173,5177,5219,5233,5411,
5582,5717,5835,6131,6220,6230,6442,6768,6796,6976,
6994,7102,7123,7139,7252,7373,7921,7969,7991,8032,
8083,8172,8326,8368,8473,8666,8678,8742,9291,9553,
9725,9760,9935,9944,9959,10384,10516,11030
GAC count: 81
TGT: 69,206,225,267,281,384,470,585,614,645,662,674,717,
736,795,911,1058,1061,1108,1185,1268,1511,1616,1701,
1923,1983,2066,2094,2114,2159,2189,2229,2498,2530,
2882,3021,3063,3091,3300,3327,3389,3465,3479,3503,
3524,3605,3654,3827,4192,4297,4336,4436,4641,4660,
4926,4962,4973,5202,5424,5440,5480,5496,5554,5695,
5755,5883,5923,6007,6162,6172,6213,6225,6388,6429,
6480,6594,6703,6746,6922,7127,7154,7269,7305,7362,
7365,7392,7401,7407,7477,7623,7758,7897,7958,7973,
8038,8090,8099,8122,8128,8135,8299,8575,8603,8627,
8636,8695,8704,9027,9064,9181,9268,9427,9456,9571,
9737,9813,9901,9917,9941,10009,10063,10075,10176,10244,
10317,10420,10465,10694,10899,10913,11124,11150
TGT count: 132
TGC: (0)
CAA: 60,110,167,197,232,329,638,678,729,939,1174,1216,1409,
1483,1997,2151,2564,3153,3202,3249,3254,3272,3282,
3459,3572,3644,3895,4324,4418,4674,4976,5158,5185,
5207,5227,5290,5434,5643,5855,6038,6234,6569,6737,
6821,6853,6878,6985,7564,7832,8371,8389,8540,8670,
8813,9156,9331,9597,9626,9976,10220,10616,10759,10794,
10868,10995
CAA count: 65
CAG: 74,98,134,444,854,1450,1558,1804,1940,2167,2449,2981,
3363,3445,3564,3922,4021,4166,4253,4451,6591,6893,
7173,7235,7339,7788,7822,8022,8599,8881,9831,9862,
10328,10743,10920
CAG count: 35
GAA: 351,393,820,1376,1492,1648,1751,1873,2199,2285,2453,
2549,2755,2799,2888,3039,3080,3167,3492,3721,4460,
4606,4713,4736,5019,5075,5319,5617,5675,5758,6250,
6334,6508,6915,7000,7062,7310,8234,8240,9218,9225,
9349,9779,10022,10048,10229,10309,10765,11042,11095
GAA count: 50
GAG: 422,1030,1420,1507,1526,1861,2252,2349,2389,2790,3769,
3808,4240,4696,4817,4950,5752,6518,6827,7083,7510,
7609,7803,9061,9362,9733,10657,10733,10771
GAG count: 29
GGT: 307,326,461,837,1054,1188,1205,1780,1890,1988,2583,
2909,3116,3317,3340,3530,3554,3832,4005,4086,4154,
4293,4401,4447,4517,4530,5025,5110,5354,5431,5476,
5596,5723,5779,5807,5958,6308,6344,6764,6814,6952,
7095,7113,7743,8063,8295,8385,8441,8445,8921,8927,
9175,9255,9411,9908,10169,10240,10287,10640,10781,
10858,10941,11127,11145,11153
GGT count: 65
GGC: 9671
GGC count: 1
GGA: 286,619,1530,1718,2686,2901,3698,3988,4223,5567,6369,
6683,6772,7523,8728,8781,9415,9466,9536
GGA count: 19
GGG: 358,962,3805,5133,6327,7603,8013,8512,8739,9172,9709,
9921,9988,10624
GGG count: 14
CAT: 17,26,87,102,186,261,300,531,752,881,885,926,1037,
1371,1395,1868,1893,1954,2003,2007,2049,2072,2088,
2119,2242,2246,2249,2488,2517,2534,2676,2699,2731,
2777,2823,3110,3134,3189,3303,3368,3385,3569,3593,
3609,3668,3674,3712,3820,3910,4076,4115,4210,4280,
4314,4344,4352,4490,4502,4536,4668,4732,4838,4987,
5042,5072,5122,5155,5181,5315,5326,5473,5512,5669,
5681,5738,5801,5810,5849,5863,5886,5948,5984,5990,
6021,6114,6140,6416,6469,6492,6513,6541,6627,6647,
7202,7302,7381,7458,7471,7481,7558,7669,7699,7712,
7819,7874,7925,7940,7985,7995,8045,8049,8106,8150,
8175,8214,8411,8424,8500,8612,8618,8647,8715,8870,
9002,9075,9239,9277,9286,9294,9390,9421,9448,9476,
9517,9677,9701,9716,9835,9930,10294,10332,10371,10405,
10472,10491,10519,10565,10599,10675,10716,10884,10931,
11068
CAT count: 153
CAC: 670,955,993,1128,1271,1350,1724,1935,2046,2320,2526,
2643,2649,2768,2794,3131,3145,3320,3380,3519,3542,
3602,3683,4073,4178,4559,5658,5773,5830,6028,6190,
6566,6707,6717,7132,7150,7180,7192,8067,8253,8345,
8497,8569,8572,8596,8659,8683,8984,9069,9131,9246,
9307,9310,9439,9586,10680
CAC count: 56
ATT: 21,604,893,929,969,1027,1152,1320,1355,1362,1436,1553,
1704,2183,2383,2615,2668,3107,3193,3279,3589,3967,
4128,4394,4470,4511,4880,5101,5199,5236,5366,5402,
5540,5826,5876,5929,6256,6305,6505,6524,6818,6884,
6928,7245,7255,7368,7519,7828,7847,8027,8219,8523,
8536,8621,8787,8890,8915,8953,9104,9115,9243,9259,
9302,9337,9451,9576,9686,9697,9802,9820,9963,10085,
10207,10391,10427,10447,10513,10541,10551,10991,11134
ATT count: 81
ATC: 131,255,387,473,1080,1584,1628,1770,1977,2052,2131,
2216,2233,2419,2513,2922,3017,3031,3853,4036,4415,
4533,4969,4996,5470,5531,5684,6197,6580,6624,6800,
7039,7595,7657,7912,8187,8203,8342,8698,8763,8806,
8899,9150,9274,9343,9525,9623,9823,9927,10559,10568,
10686,10706,11141
ATC count: 54
ATA: 486,1034,1358,1657,1926,3246,3355,3637,3791,4262,4277,
4579,5061,5726,6124,6382,6671,8330,8839,8903,9328,
9579,10234,10533,10544,10643,10756,11012
ATA count: 28
CTT: 156,181,390,412,478,666,810,903,914,932,979,1042,1550,
1709,1758,2035,2055,2258,2326,2441,2444,2558,2570,
2587,2720,2745,2833,2930,3024,3069,3095,3178,3377,
3686,3689,3752,3857,3959,4008,4100,4273,4311,4317,
4374,4477,4484,4514,4539,4602,4636,4831,4910,4955,
5119,5242,5286,5361,5386,5515,5522,5577,5614,5691,
5814,5900,5974,5995,6103,6260,6311,6366,6385,6616,
6631,6668,6694,6859,7010,7051,7292,7347,7377,7404,
7738,7794,7858,7917,8158,8276,8333,8349,8408,8530,
8766,8848,8932,9046,9080,9086,9193,9271,9283,9316,
9383,9387,9436,9531,9591,9730,9954,10035,10119,10166,
10192,10290,10375,10381,10416,10809,10819,11049,11111,
11156
CTT count: 123
CTC: 581,763,923,1083,1232,1343,1405,1991,2091,2186,2492,
2605,2695,2985,3454,3692,3816,3913,3972,4016,4029,
4143,4348,4521,4860,4863,4990,5192,5254,5500,5518,
5735,6127,6355,6733,6803,6941,7265,7454,7585,7755,
8311,8454,8886,8895,9072,9145,9262,9298,9849,9968,
10396,10587,10816,10848,11078,11120
CTC count: 57
CTA: 194,214,228,785,917,1046,1335,1541,2195,2224,2299,
2341,2408,2561,2595,2780,2809,2953,3035,3076,3616,
4045,4092,5358,5525,6201,6426,6676,6779,6809,7032,
7344,8196,8211,8490,8554,8809,8865,9773,10038,10041,
10111,10434,10877,11033
CTA count: 45
CTG: 400,804,1444,1727,1739,1848,1855,2277,2816,2913,2960,
3623,3717,3877,4245,4408,4805,4942,7462,7499,7589,
7632,8663,8996,9852,10306
CTG count: 26
TTA: 292,1783,1820,2976,3213,4546,4709,5069,5222,5651,5785,
5817,5912,6432,6603,7638,7772,9043,9770,9938,10365,
10484,10697,11087
TTA count: 24
TTG: 313,575,745,755,1093,1112,1208,2386,2392,2580,2761,
2872,3293,3412,3434,4457,4644,4749,4853,5216,5276,
6051,6090,6338,6657,7248,7799,7943,8060,8230,8639,
9005,9365,9653,10088,10253,10651,10934,11021
TTG count: 39
AAA: 30,200,523,1255,1379,2154,2202,2891,3042,3406,3418,
4553,4716,5894,5951,5999,6134,6206,6473,6663,6787,
7641,7866,8261,8935,10146,10747,11061,11098
AAA count: 29
AAG: 310,871,1312,1412,1429,1495,1691,1836,2205,2598,2656,
3932,4266,5210,5298,5954,6435,6575,7450,7541,8247,
8374,8630,8976
AAG count: 24
ATG: 686,1194,1897,2329,2431,2682,3343,3551,3760,4213,4593,
5377,6179,6793,7059,8365,8432,8590,8675,10019,10122
ATG count: 21
TTT: 48,333,607,1105,1668,2013,2577,2842,3088,3102,3139,
4269,4391,4397,4480,4576,4699,5065,5213,5420,5573,
5672,6350,6654,7074,7176,7205,7415,7544,7735,7769,
8417,8533,8833,9037,9340,9877,10104,10527,10530,10660,
10740,11104,11130,11137
TTT count: 45
TTC: 107,116,176,720,952,958,2255,2269,2826,2850,3027,3066,
3142,3175,3333,3629,3671,3738,3873,4256,4763,4772,
4917,5311,5343,5732,5939,6042,6072,6487,6955,7314,
7430,8114,8125,8164,9126,10197,10216,10325
TTC count: 40
CCT: 946,1433,2380,2989,3516,3919,4065,4377,4621,4920,5666,
5981,6194,6358,7286,7763,8010,8087,8795,9101,9313,
9325,9634,10409,10502
CCT count: 25
CCC: 144,1961,2323,2692,2969,7216,8042,8689,9139,9528,9568,
9859,10172,10457,10594
CCC count: 15
CCA: 840,1515,2021,2836,2996,3310,4741,5346,7474,7613,8096,
8701,9617,9947
CCA count: 14
CCG: 6495
CCG count: 1
TCT: 1573,1994,2043,2069,2469,2898,2919,2945,3002,3660,
3935,4907,5033,5926,6457,7825,7838,8336,8402,8760,
8836,9083,9211,10469,10896,11009
TCT count: 26
TCC: 436,1131,1498,3451,5655,5852,7438,7579,8250,8633,9460,
10719
TCC count: 12
TCA: 77,239,1265,2177,3269,3561,4146,4355,4615,5053,6004,
7350,7555,7782,7976,9236,9994,10179
TCA count: 18
TCG: 8817
TCG count: 1
AGT: 54,572,628,920,1141,1304,1644,1786,2032,3127,3352,
3462,3744,4609,4871,4934,5764,5906,6137,6612,6856,
7490,7570,7775,7869,7904,8966,8993,9486,9692,9809,
10211,10453,11090
AGT count: 34
AGC: 1904
AGC count: 1
ACT: 278,1715,2646,3324,5776,6106,6644,6845,7844,7982,9089,
10775
ACT count: 12
ACC: 2711,4089,6097,6242,7147,9201,9594,9664,10802
ACC count: 9
ACA: 264,504,635,1951,2749,4793,5139,6757,8004,8270,9424,
10441
ACA count: 12
ACG: (0)
TGG: 137,494,2520,3113,4169,4203,5262,5804,6606,7384,8842,
9346,10606,10730,10851
TGG count: 15
TAT: 425,714,1069,1249,1392,1504,1678,2352,2640,4487,4787,
5446,5607,6973,7709,8615,8827,8855,9252,10237,10683
TAT count: 21
TAC: 3186,4175,4847,5534,6394,7238,7326,8566,9559,9719,
10378,10584
TAC count: 12
GTT: 203,823,2085,4496,4527,5022,5230,6087,6743,6881,7003,
8941,10025,10703,10871
GTT count: 15
GTC: 66,9640
GTC count: 2
GTA: 8019,10368
GTA count: 2
GTG: 655,5078,7966,10137,10768
GTG count: 5
TAA: 5548,5590,6010,7626
TAA count: 4
TAG: 4454,8161
TAG count: 2
TGA: 1599,2103,4824,5104,6165
TGA count: 5
37) Codon Usage Bias:
About: Influenza C virus (C/Ann Arbor/1/50) HEF gene for hemagglutinin-esterase-fusion, complete cds (2073bp)
VERSION: NC_006310.2
CODONS & LOCATIONS:
GCT: 61,104,122,168,184,221,256,292,427,499,521,593,667,
724,731,894,900,929,968,1000,1054,1058,1114,1152,1174,
1267,1392,1427,1434,1480,1630,1714,1769,1910,1916,
1930,1933,1948,2065,2071
GCT count: 40
GCC: 50,80,110,142,177,190,532,951,1098,1214,1259,1304,
1585,1660,1969
GCC count: 15
GCA: 2,8,90,248,283,515,565,574,584,610,707,714,882,1025,
1042,1064,1076,1092,1181,1270,1355,1402,1414,1543,
1581,1618,1682,1747,1837,1881,1907,1921,1945,1976
GCA count: 34
GCG: 271,559
GCG count: 2
CGT: 304,1407
CGT count: 2
CGC: (0)
CGA: 954,1371,1830
CGA count: 3
CGG: 126,146,1223
CGG count: 3
AGA: 57,74,150,157,228,360,445,479,624,642,657,753,769,
831,867,913,925,937,958,981,1029,1110,1131,1137,1177,
1227,1255,1278,1299,1352,1444,1473,1496,1525,1548,
1564,1591,1605,1621,1641,1657,1695,1719,1740,1887
AGA count: 45
AGG: 129,235,265,356,375,392,405,825,838,855,987,1071,1144,
1158,1194,1274,1455,1458,1461,1488,1638,1671,1686,
1737,1764
AGG count: 25
AAT: 18,21,69,118,133,202,451,472,506,529,580,604,631,647,
661,689,763,859,879,948,1007,1140,1190,1204,1247,1293,
1311,1359,1368,1419,1500,1507,1518,1537,1558,1608,
1615,1650,1653,1675,1722,1776,1783,1872,1985,1997,
2007,2014,2056
AAT count: 49
AAC: 97,288,386,412,467,484,494,543,589,684,696,710,781,
835,876,905,1209,1326,1341,1346,1553,1599,1709,1725,
1786,1810,1833,1848,1926,1980,2050
AAC count: 31
GAT: 42,216,274,295,320,327,460,745,773,795,802,1048,1083,
1117,1120,1330,1576,1594,1795,1876,1956,1965,2011
GAT count: 23
GAC: 241,344,456,538,778,889,973,1036,1165,1375,1467,1510,
1561,1780,1864,1988,1994
GAC count: 17
TGT: 137,161,171,195,311,338,379,439,614,720,758,819,886,
1079,1338,1398,1464,1634,1664,1792,1804,1842,2033
TGT count: 23
TGC: (0)
CAA: 85,180,205,556,790,1051,1087,1289,1798,1807,1821,1827,
1868
CAA count: 13
CAG: 638,920,992,1320,2037
CAG count: 5
GAA: 5,64,383,654,812,978,1019,1171,1411,1439,1483,1612,
1627,1753,1904
GAA count: 15
GAG: 333,417,703,1147,1424
GAG count: 5
GGT: 13,316,525,570,1200,1387,1668,1773,1953
GGT count: 9
GGC: (0)
GGA: 187,353,910,1252,1504
GGA count: 5
GGG: 1016,1647,1706,1901
GGG count: 4
CAT: 32,212,424,511,738,806,1011,1039,1104,1126,1284,1380,
1573,1851,1940
CAT count: 15
CAC: 54,115,347,503,618,675,845,852,870,996,1123,1187,1317,
1335
CAC count: 14
ATT: 251,487,547,734,917,965,1384,1567,1644,1689,1789,1816,
1936,2019
ATT count: 14
ATC: 463,1032,1281,1430,1452,1476,1540,1588,1698,1884,1972
ATC count: 11
ATA: 389,1101,1230,1513,1678
ATA count: 5
CTT: 39,198,308,324,367,551,597,635,664,672,679,728,786,
848,943,1217,1237,1263,1395,1529,1861,1892,2062
CTT count: 23
CTC: 932,1067,1234,1241,1758,1959
CTC count: 6
CTA: 363,699,741,798,1349,1522,1532,1744
CTA count: 8
CTG: 350,809,863,1162
CTG count: 4
TTA: 399,1220,1702,1896,2001
TTA count: 5
TTG: 46,164,224,341,535,692,1364,1493
TTG count: 8
AAA: 153,244,448,577,600,766,984,1095,1447,1470,2004,2053
AAA count: 12
AAG: 298,815,1022
AAG count: 3
ATG: 491
ATG count: 1
TTT: 25,259,278,301,395,1602,1813,2040
TTT count: 8
TTC: 28,231,475,940,1307
TTC count: 5
CCT: 262,1858
CCT count: 2
CCC: 873,1296,1855,2059
CCC count: 4
CCA: 372,421,607,897,1244
CCA count: 5
CCG: (0)
TCT: 268,717,1570,1624
TCT count: 4
TCC: 1004,1314,1761,1845
TCC count: 4
TCA: 107,1134,2024
TCA count: 3
TCG: (0)
AGT: 93,100,208,408,627,748,961,1801
AGT count: 8
AGC: (0)
ACT: 36,238,562,828,2068
ACT count: 5
ACC: (0)
ACA: 621,1692
ACA count: 2
ACG: (0)
TGG: 651,822,1107,1323,1913,1962,1991
TGG count: 7
TAT: 77,842,1168,1184
TAT count: 4
TAC: 442
TAC count: 1
GTT: 330,1750,1824
GTT count: 3
GTC: 1155
GTC count: 1
GTA: (0)
GTG: 1045,1197
GTG count: 2
TAA: 174
TAA count: 1
TAG: (0)
TGA: 402,518,1061
TGA count: 3
38) Codon Usage Bias:
About: Influenza B virus (B/Lee/1940) segment 8, complete sequence (1096bp)
VERSION: NC_002211.1
CODONS & LOCATIONS:
GCT: 131,303,325,693,700,712,814,962,969,980,1059
GCT count: 11
GCC: 97,157,182,240,345,447,749,801,893
GCC count: 9
GCA: 2,8,31,88,115,150,277,374,505,627,673,811,855,1050,
1054
GCA count: 15
GCG: 46,777,823
GCG count: 3
CGT: 556,580
CGT count: 2
CGC: (0)
CGA: 199,390,399,459,508,774,808,859
CGA count: 8
CGG: 36,83,612,724,754,897
CGG count: 6
AGA: 41,154,177,190,207,214,221,233,245,267,271,438,441,
444,501,515,539,543,598,639,664,683,744,852,870,873,
879,887,901,923
AGA count: 30
AGG: 12,74,139,253,336,417,473,484,521,571,690,734,789,
1029
AGG count: 14
AAT: 69,94,120,203,291,330,361,377,385,454,468,496,551,
564,583,634,670,804,842,883,958,976,1024,1066,1073,
1079
AAT count: 26
AAC: 52,63,229,369,411,493,532,615,654,704,763,819,952,
965,1012
AAC count: 15
GAT: 294,316,430,574,718,721,784,929,932,988
GAT count: 10
GAC: 49,57,163,396,433,487,561,679,983
GAC count: 9
TGT: 257,308,352,587,590,602,696,708,942,991,1017,1033,
1044,1087
TGT count: 14
TGC: (0)
CAA: 511,624,642,797,949
CAA count: 5
CAG: 728
CAG count: 1
GAA: 5,112,136,297,357,451,526,609,739,1040
GAA count: 10
GAG: 127,830,916
GAG count: 3
GGT: 79,172,285,606,847,1036
GGT count: 6
GGC: (0)
GGA: 548,1009
GGA count: 2
GGG: 876
GGG count: 1
CAT: 146,661,793,973,996,1002
CAT count: 6
CAC: 26,60,187,226,463,767,866
CAC count: 7
ATT: 15,19,280,480,926
ATT count: 5
ATC: 167,210,651,757,837
ATC count: 5
ATA: 217,248,348,577,938
ATA count: 5
CTT: 108,160,262,427,594,618,648,658,771,834,905
CTT count: 11
CTC: 321,366,407,536,760,1083
CTC count: 6
CTA: 193,1092
CTA count: 2
CTG: 124,890
CTG count: 2
TTA: 311,402,862
TTA count: 3
TTG: 341,393,667
TTG count: 3
AAA: 196,274,288,420,567,920,1076
AAA count: 7
AAG: (0)
ATG: 490,686,1020,1063
ATG count: 4
TTT: 142,780
TTT count: 2
TTC: (0)
CCT: 621,631
CCT count: 2
CCC: 414
CCC count: 1
CCA: 382,946
CCA count: 2
CCG: (0)
TCT: (0)
TCC: (0)
TCA: (0)
TCG: (0)
AGT: 23,300,477,935,955
AGT count: 5
AGC: (0)
ACT: 715,1006
ACT count: 2
ACC: 91
ACC count: 1
ACA: 66,1047
ACA count: 2
ACG: (0)
TGG: 731,827
TGG count: 2
TAT: 676,999
TAT count: 2
TAC: 424
TAC count: 1
GTT: (0)
GTC: 645
GTC count: 1
GTA: 529,1069
GTA count: 2
GTG: 236
GTG count: 1
TAA: 518
TAA count: 1
TAG: (0)
TGA: 333
TGA count: 1
39) Codon Usage Bias:
About: Influenza A virus (A/Puerto Rico/8/1934(H1N1)) segment 1, complete sequence (2341bp)
VERSION: NC_002023.1
CODONS & LOCATIONS:
GCT: 310,399,688,743,800,811,814,835,964,986,1059,1176,
1359,1737,1845,1897,2041,2077,2092,2191,2199
GCT count: 21
GCC: 112,277,419,493,547,878,946,1141,1210,1228,1419,1786,
1796,1894,2008,2142,2267,2296
GCC count: 18
GCA: 8,63,71,157,181,202,243,405,481,502,570,614,637,665,
701,723,838,847,859,884,924,942,959,967,1067,1095,
1135,1156,1216,1264,1320,1436,1469,1496,1517,1864,
1891,1908,1920,1979,2045,2072,2120,2146,2153,2168,
2208,2252
GCA count: 48
GCG: 2,77,1028,1297,1305,1351,2176,2275
GCG count: 8
CGT: 99,451,1287,1625,2217
CGT count: 5
CGC: (0)
CGA: 289,393,537,578,671,1197,1205,1389,1422,1440,1549,
1572,2012,2055,2236,2311,2326
CGA count: 17
CGG: 218,454,563,1064,1499,1525,1540,2031,2242,2290
CGG count: 10
AGA: 34,42,49,80,122,139,146,149,209,233,285,388,433,457,
588,593,597,600,650,654,752,779,829,832,872,890,912,
936,939,979,1019,1043,1047,1053,1085,1090,1110,1129,
1132,1150,1165,1192,1245,1270,1333,1343,1453,1462,
1482,1502,1534,1599,1640,1690,1724,1792,1816,1868,
1915,1963,2015,2058,2064,2124,2127,2134,2184,2214,
2270,2284
AGA count: 70
AGG: 135,143,163,246,328,497,506,550,608,735,765,768,817,
904,1100,1162,1294,1346,1577,1592,1837,1948,1956,1975,
2036,2101,2131,2181,2211
AGG count: 29
AAT: 15,25,52,57,117,170,188,195,222,238,267,271,325,331,
339,346,366,447,469,513,566,618,900,1119,1221,1282,
1291,1300,1312,1369,1393,1404,1449,1473,1555,1611,
1629,1645,1655,1669,1679,1710,1734,1744,1749,1754,
1799,1833,1872,1942,1959,2158,2194,2202,2229,2302
AAT count: 56
AAC: 93,252,375,411,436,558,582,696,738,749,820,928,933,
1023,1077,1325,1382,1587,1596,1604,1614,1693,1701,
1760,1829,1877,1996,2002,2052,2162
AAC count: 30
GAT: 174,177,213,225,274,281,294,484,630,674,784,787,793,
804,1007,1031,1103,1170,1179,1249,1257,1276,1398,1407,
1413,1443,1632,1683,1840,1858,1952,2105
GAT count: 32
GAC: 103,205,315,335,342,463,729,850,974,1428,1522,1543,
1608,1851,2018,2245,2263
GAC count: 17
TGT: 423,510,525,644,705,719,755,875,1224,1252,1479,1565,
1661,1704,1812,1823,1938,1971,1989,2222,2308,2332
TGT count: 22
TGC: (0)
CAA: 89,362,372,439,444,585,796,1366,1433,1546,1904,2280
CAA count: 12
CAG: 350,489,683,996,1037,1201,1581,1658,1714,1768,1803,
2024
CAG count: 12
GAA: 31,385,520,715,772,1213,2068,2187,2232
GAA count: 9
GAG: 261,1185,1376,1457,1486,2081,2086
GAG count: 7
GGT: 11,297,320,475,633,660,691,895,909,952,1003,1056,1122,
1233,1273,1506,1512,1648,1665,1718,1808,2226
GGT count: 22
GGC: (0)
GGA: 544,1050,1552,1698
GGA count: 4
GGG: 746,1126,1189,1373,1401,1476,1637
GGG count: 7
CAT: 106,131,355,427,478,516,711,915,989,1013,1034,1336,
1425,1622,1686,1763,1931,2112
CAT count: 18
CAC: 96,302,854,887,1116,1241,1901
CAC count: 7
ATT: 21,380,611,808,867,982,1080,1236,1416,1789,1854,1982,
1992,2287
ATT count: 14
ATC: 191,359,843,1070,1465,1676,2299
ATC count: 7
ATA: 37,466,553,758,823,955,1144,1740,1966,2314
ATA count: 10
CTT: 160,414,626,863,919,993,1530,1772,1882,1887,2048,2173,
2257
CTT count: 13
CTC: 68,85,305,604,623,679,761,1147,1491,1568,1820,1926,
1985
CTC count: 13
CTA: 46,369,533,574,1316,1385,1561,1730,1781,2249,2337
CTA count: 11
CTG: 230,1279,1309,1652,2098,2116
CTG count: 6
TTA: 256,1016,1330,1617,1934,2149,2319
TTA count: 7
TTG: 1379,1757
TTG count: 2
AAA: 5,402,668,1153,1260,1354,2239,2322
AAA count: 8
AAG: 396,1911,2005
AAG count: 3
ATG: 28,109,166,184,970,1106,2138,2293
ATG count: 8
TTT: 430,528,726,999,1339,1362
TTT count: 6
TTC: 1073,2027
TTC count: 2
CCT: 472,1673,2109,2329
CCT count: 4
CCC: 74,153,1721,2061
CCC count: 4
CCA: (0)
CCG: (0)
TCT: (0)
TCC: 1826,2089
TCC count: 2
TCA: 732,1010,1040,1173,2021
TCA count: 5
TCG: (0)
AGT: 125,540,1182,1509,1776
AGT count: 5
AGC: (0)
ACT: 657,2260
ACT count: 2
ACC: 1159,1727,1861
ACC count: 3
ACA: 128,199,249,641,881,1138
ACA count: 6
ACG: (0)
TGG: 408,647,1410,1848,2205
TGG count: 5
TAT: 18
TAT count: 1
TAC: 1999
TAC count: 1
GTT: 460,790,1113,1267,1923,2095
GTT count: 6
GTC: 60,1446,1537
GTC count: 3
GTA: 708,1558
GTA count: 2
GTG: 775,826,949,1945
GTG count: 4
TAA: 264,1707
TAA count: 2
TAG: 2305
TAG count: 1
TGA: 1584,2165
TGA count: 2
40) Codon Usage Bias:
About: Influenza C virus (C/Ann Arbor/1/50) segment 5, complete sequence (1807bp)
VERSION: NC_006311.1
CODONS & LOCATIONS:
GCT: 84,192,312,364,442,459,522,549,612,807,891,1050,1072,
1083,1110,1190,1230,1242,1272,1343,1362,1773,1799,
1805
GCT count: 24
GCC: 59,78,111,120,139,252,361,666,714,749,798,845,872,
894,921,951,1120,1662
GCC count: 18
GCA: 2,8,68,73,175,180,243,268,279,322,342,417,426,450,
474,501,504,587,618,649,684,719,759,765,783,822,828,
933,939,972,1068,1221,1251,1282,1290,1299,1521,1593,
1615,1696,1705
GCA count: 41
GCG: 148,261,738
GCG count: 3
CGT: 42
CGT count: 1
CGC: (0)
CGA: 557,691,1019,1538,1544
CGA count: 5
CGG: 515,593,1169
CGG count: 3
AGA: 13,39,51,55,62,100,198,238,246,258,297,309,369,414,
435,470,489,495,507,510,564,640,644,654,681,711,730,
756,768,771,801,850,862,897,911,945,948,979,1091,1137,
1143,1164,1206,1215,1236,1263,1312,1322,1332,1340,
1370,1404,1487,1550,1566,1575,1597,1625,1628,1649,
1666,1669,1732
AGA count: 63
AGG: 130,223,231,545,623,722,1004,1154,1268,1308,1428,1447,
1457,1512,1631
AGG count: 15
AAT: 29,81,92,96,144,155,171,276,327,352,380,388,402,422,
498,526,554,578,596,629,633,669,676,725,792,813,869,
924,966,983,989,1010,1013,1028,1033,1061,1151,1254,
1277,1350,1412,1421,1442,1466,1479,1497,1502,1506,
1589,1602,1608,1634,1644,1687,1722,1738,1782,1790
AAT count: 58
AAC: 48,332,406,411,465,560,786,854,858,1140,1158,1184,
1316,1375,1385,1408,1431,1492,1557,1585,1675,1761
AAC count: 22
GAT: 19,161,210,282,293,575,663,795,1023,1064,1473,1482,
1618,1638,1652,1683,1757
GAT count: 17
GAC: 36,264,356,615,866,1007,1044,1078,1657,1691
GAC count: 10
TGT: 126,204,207,347,374,529,776,838,879,883,930,993,1325,
1764,1767
TGT count: 15
TGC: (0)
CAA: 25,45,255,486,1053,1233,1329,1359,1394,1580,1786
CAA count: 11
CAG: 319,1097,1248
CAG count: 3
GAA: 5,108,168,186,214,234,249,430,582,637,688,708,804,
825,908,957,1016,1148,1173,1305,1571,1641,1717
GAA count: 23
GAG: 601,658,915,1224
GAG count: 4
GGT: 315,696,886,1103,1115
GGT count: 5
GGC: (0)
GGA: 399,492,942,1425,1518,1622
GGA count: 6
GGG: (0)
CAT: 89,104,116,287,339,393,590,818,1365,1378,1418,1562,
1709,1742
CAT count: 14
CAC: 533,539,832,1211,1319,1524,1745
CAC count: 7
ATT: 123,183,477,480,969,1058,1202,1285,1541,1770
ATT count: 10
ATC: 220,1611
ATC count: 2
ATA: 195,201,609,1776
ATA count: 4
CTT: 272,455,606,900,962,998,1094,1128,1199,1245,1258,1389,
1462,1528,1532,1678,1796
CTT count: 17
CTC: 384,438,446,703,904,1106,1195,1793
CTC count: 8
CTA: 300,335,762,810,1347,1553,1699
CTA count: 7
CTG: 165,745,1438,1714
CTG count: 4
TTA: 304,753,1476,1735
TTA count: 4
TTG: 875,1075,1134,1336
TTG count: 4
AAA: 189,226,733,779,842,1176,1353,1397,1726
AAA count: 9
AAG: 133,1047,1131,1434
AAG count: 4
ATG: 151,975,1087
ATG count: 3
TTT: 16,22,626,741,918,954,1100,1180,1227,1239,1294,1452,
1535
TTT count: 13
TTC: 518,927,1161,1415,1509
TTC count: 5
CCT: 1125
CCT count: 1
CCC: 700,1547
CCC count: 2
CCA: (0)
CCG: (0)
TCT: 33,462,536,1515
TCT count: 4
TCC: 835
TCC count: 1
TCA: 377,542,1001,1605
TCA count: 4
TCG: (0)
AGT: 217,1187,1400
AGT count: 3
AGC: (0)
ACT: 1802
ACT count: 1
ACC: (0)
ACA: 1382
ACA count: 1
ACG: (0)
TGG: 136,290,396,986,1218
TGG count: 5
TAT: 483,936,1470,1754,1779
TAT count: 5
TAC: 789
TAC count: 1
GTT: 158,1356
GTT count: 2
GTC: 1729
GTC count: 1
GTA: 672,1702
GTA count: 2
GTG: 1302
GTG count: 1
TAA: (0)
TAG: (0)
TGA: 65,1672
TGA count: 2
41) Codon Usage Bias:
About: Influenza B virus (B/Lee/1940) segment 6, complete sequence (1557bp)
VERSION: NC_002209.1
CODONS & LOCATIONS:
GCT: 56,164,319,384,414,444,462,509,579,781,786,987,1085,
1230,1288,1374,1402,1415,1446,1543
GCT count: 20
GCC: 40,129,231,284,313,349,467,598,735,897,921,1058,1383
GCC count: 13
GCA: 2,8,13,192,214,222,252,336,433,459,515,576,594,651,
678,705,739,745,805,869,883,901,945,1006,1048,1053,
1093,1125,1367,1377
GCA count: 30
GCG: 586,889,1063,1435
GCG count: 4
CGT: 303,1109
CGT count: 2
CGC: (0)
CGA: 831,1152,1156,1292,1346
CGA count: 5
CGG: 154,362,626,749,1036
CGG count: 5
AGA: 23,209,235,260,281,331,365,399,428,492,501,609,674,
720,728,755,776,822,842,861,878,914,927,951,996,1012,
1022,1032,1076,1119,1132,1140,1173,1262,1265,1306,
1358,1520
AGA count: 38
AGG: 98,316,357,374,496,791,826,857,1100,1103,1300,1406
AGG count: 12
AAT: 46,53,169,200,228,344,395,483,532,542,613,645,662,
667,794,802,818,836,845,964,969,992,1066,1071,1250,
1295,1309,1411,1461,1526,1540
AAT count: 31
AAC: 35,50,65,74,80,179,185,188,197,219,243,323,378,403,
488,504,548,558,711,773,854,908,933,977,1166,1170,
1186,1480,1504
AAC count: 29
GAT: 263,368,392,475,589,603,633,648,770,808,981,1001,1041,
1181,1203,1227,1314,1397,1440,1469
GAT count: 20
GAC: 266,293,421,436,449,617,642,687,930,1209,1217,1221,
1422
GAC count: 13
TGT: 68,122,136,148,158,239,410,417,551,759,918,924,959,
1159,1189,1193,1323,1392,1427,1473,1487,1510,1529,
1548
TGT count: 24
TGC: (0)
CAA: 256,371,424,659,1009,1079,1097,1116
CAA count: 8
CAG: 526,1432
CAG count: 2
GAA: 5,29,538,555,1045,1354,1536
GAA count: 7
GAG: 103,288,512,1090,1246
GAG count: 5
GGT: 606,636,656,892,1144,1206,1253,1272,1276,1340,1350,
1464
GGT count: 12
GGC: (0)
GGA: 583,866,974,1137
GGA count: 4
GGG: 470,752,1178,1329
GGG count: 4
CAT: 94,133,139,175,205,246,354,453,563,572,691,696,886,
911,1113,1213,1259
CAT count: 17
CAC: 115,274,708,724,872,941,1025
CAC count: 7
ATT: 17,77,86,107,110,151,161,269,742,1106,1279,1326,1386,
1494,1499
ATT count: 15
ATC: 308,714,763,1018
ATC count: 4
ATA: 119,296,620,682,904,1451
ATA count: 6
CTT: 20,61,143,326,389,406,440,813,849,956,1015,1233,1239,
1282,1363,1484,1514
CTT count: 17
CTC: 90,339,1148
CTC count: 3
CTA: 479,519,701,717,1129,1162,1477,1553
CTA count: 8
CTG: (0)
TTA: 766,938
TTA count: 2
TTG: 1285
TTG count: 1
AAA: 43,182,839,948,1196
AAA count: 5
AAG: 731
AAG count: 1
ATG: 670,1122,1418,1443
ATG count: 4
TTT: 172,566,1523
TTT count: 3
TTC: 1256,1370,1532
TTC count: 3
CCT: 83,300,639,1269,1320,1491
CCT count: 6
CCC: 277,545,1029
CCC count: 3
CCA: 569
CCA count: 1
CCG: (0)
TCT: 249
TCT count: 1
TCC: (0)
TCA: 126,225,381,529
TCA count: 4
TCG: (0)
AGT: 629,798,1224,1242,1507
AGT count: 5
AGC: (0)
ACT: 26,1236,1517
ACT count: 3
ACC: (0)
ACA: 71,984,1303,1343,1380
ACA count: 5
ACG: (0)
TGG: 535
TGG count: 1
TAT: 456,523,623,1200
TAT count: 4
TAC: 1389
TAC count: 1
GTT: (0)
GTC: 1317
GTC count: 1
GTA: (0)
GTG: 32,1082
GTG count: 2
TAA: (0)
TAG: (0)
TGA: 875
TGA count: 1
42) Codon Usage Bias:
About: Lymphocytic choriomeningitis virus segment S, complete sequence (3376bp)
VERSION: NC_004294.1
CODONS & LOCATIONS:
GCT: 18,32,105,152,177,234,615,697,703,712,954,962,1031,
1056,1059,1249,1253,1477,1570,1721,1732,1868,1896,
1929,1957,2064,2135,2233,2239,2264,2267,2276,2308,
2339,2366,2503,2509,2514,2558,2614,2622,2652,2726,
2865,2871,2919,2991,3172,3250,3272,3289,3322
GCT count: 52
GCC: 60,110,192,341,357,459,508,622,669,739,931,1014,1092,
1178,1314,1490,1541,1583,1627,1660,1716,1828,1948,
2041,2112,2245,2280,2376,2474,2486,2561,2567,2599,
2664,2710,2765,2774,2797,2954,2961,2984,3005,3036,
3230,3358
GCC count: 45
GCA: 2,210,238,250,348,445,546,571,721,793,801,874,957,
984,997,1097,1186,1218,1361,1380,1413,1426,1436,1463,
1530,1683,1747,1760,1812,1982,2015,2030,2223,2297,
2395,2576,2579,2706,2790,2858,3008,3029,3212,3227,
3255,3348
GCA count: 46
GCG: 556,870,990,1034,1228,1767,1974,2186,2745,3276,3374
GCG count: 11
CGT: 158,1082,1556,2115,2736
CGT count: 5
CGC: (0)
CGA: 122,272,505,606,745,1304,1497,1603,1864,1890,1996,
2353,2478
CGA count: 13
CGG: 6,166,257,674,974,1944,2007,2085
CGG count: 8
AGA: 42,72,85,401,472,525,602,619,630,639,645,653,663,716,
724,742,774,839,844,864,896,913,1076,1085,1133,1161,
1211,1222,1282,1331,1357,1566,1575,1607,1615,1631,
1641,1706,1925,1961,1979,2022,2033,2315,2493,2585,
2602,2642,2672,2681,2783,2902,2968,3011,3086,3107,
3181,3200,3304,3338
AGA count: 60
AGG: 75,127,265,284,690,822,861,905,920,1149,1309,1341,
1345,1472,1511,1537,1621,1673,1728,2182,2210,2254,
2272,2422,2555,2714,2894,2999,3125,3203,3309,3362
AGG count: 32
AAT: 95,186,295,417,567,583,682,754,771,940,994,1005,1018,
1040,1119,1263,1278,1301,1448,1514,1669,1687,1741,
1900,2058,2069,2131,2156,2167,2173,2197,2289,2320,
2350,2524,2605,2801,3078,3090,3220,3269,3326,3343,
3355
AAT count: 44
AAC: 47,135,330,345,360,363,438,465,531,537,564,575,588,
786,978,1050,1109,1112,1138,1152,1232,1320,1454,1502,
1506,1553,1651,1696,1823,1885,1990,2003,2108,2398,
2437,2449,2453,2482,2534,2552,2839,2884,3052,3166,
3191,3295
AAC count: 46
GAT: 10,26,131,161,203,215,315,420,761,815,944,947,1011,
1127,1145,1164,1169,1296,1317,1325,1334,1385,1397,
1744,1774,1936,2079,2148,2410,2518,2611,2632,2688,
2805,2819,2977,3065,3157,3242
GAT count: 39
GAC: 92,268,335,389,397,407,452,480,593,707,887,935,1026,
1044,1389,1591,1953,2259,2293,2528,2618,2635,2695,
2756,3014,3071,3175,3223
GAC count: 28
TGT: 54,89,140,149,198,246,253,319,351,627,658,735,892,
969,1001,1023,1238,1256,1442,1482,1518,1524,1547,1645,
1679,1692,1791,1848,1916,2045,2072,2094,2102,2120,
2179,2227,2311,2323,2326,2356,2370,2430,2457,2538,
2655,2698,2719,2729,2753,2759,2794,2808,2891,2923,
2926,3122,3132,3318,3371
TGT count: 59
TGC: 29,2012
TGC count: 2
CAA: 173,281,609,768,1073,1106,1195,1244,1445,1486,1737,
2082,2363,2521,2733,2771,2812,3049
CAA count: 18
CAG: 57,218,304,380,431,518,1292,1460,1579,1763,1806,2628,
3019,3096
CAG count: 14
GAA: 783,1562,2128,2390,2951,3184,3247,3286
GAA count: 8
GAG: 102,309,494,1064,1367,1624,1756,1919,2048,2461,2722,
2748,2822,2868,3115
GAG count: 15
GGT: 81,241,642,804,908,924,1175,1204,1266,1527,1610,1635,
1771,1876,1999,2025,2123,2193,2285,2300,2442,2496,
2649,2910,3102,3208,3329
GGT count: 27
GGC: (0)
GGA: 679,1079,1713
GGA count: 3
GGG: 51,386,528,700,1172,1364,2958
GGG count: 7
CAT: 116,119,143,275,324,338,372,377,425,428,491,578,686,
796,877,1008,1215,1352,1408,1466,1753,1854,1879,1941,
1966,2038,2151,2206,2336,2418,2547,2676,2739,2832,
2878,2938,2974,3135,3154,3195,3237,3281,3313
CAT count: 43
CAC: 369,413,435,483,487,513,728,789,857,881,1155,1259,
1287,1494,1598,1648,1820,1841,2143,2248,2347,2385,
2572,2848,2853,3043,3082,3368
CAC count: 28
ATT: 206,404,596,825,928,1103,1183,1189,1348,1654,1802,
1912,2138,3055,3169,3258
ATT count: 16
ATC: 65,448,522,551,916,1088,1417,2379,2888,2897,3351,3365
ATC count: 12
ATA: 498,541,765,2596,2768,2777,2941
ATA count: 7
CTT: 228,261,410,476,560,635,808,831,854,901,951,1100,1123,
1270,1274,1392,1430,1638,1779,1783,1786,1796,1816,
1845,1851,1906,2053,2061,2214,2382,2470,2658,2692,
2786,2826,2843,2906,2980,3024,3058,3061,3110,3129,
3142,3148,3217,3263,3292,3301
CTT count: 49
CTC: 38,455,599,828,1595,1858,2164,2202,2305,2342,2500,
2995,3119,3138,3161,3178,3266,3334
CTC count: 18
CTA: 14,68,182,225,847,867,1377,1664,1986,2159,2360,2588,
2913
CTA count: 13
CTG: 231,327,394,731,779,884,1559,1710,2230,2251,2445,2646,
3032
CTG count: 13
TTA: 278,290,298,749,1534,2217,3075
TTA count: 7
TTG: 23,811,1158,1338,1724,2018,2189,2685,2762
TTG count: 9
AAA: 468,1469,1550,2097,2220,2703
AAA count: 6
AAG: 966,1053,1068,2591,2815,2930
AAG count: 6
ATG: 78,2105,2373
ATG count: 3
TTT: 99,189,221,312,441,502,1200,1401,1701,2075,2330,2401,
2414,2464,2667,2964,3046
TTT count: 17
TTC: 35,462,1130,1882,1932,2089,2426,2489,2874,2933,2987,
3145,3233,3298
TTC count: 14
CCT: 650,758,1208,1433,1439,1588,1861,1873,1909,1971,2564,
2862,2948,2971,3151
CCT count: 15
CCC: 835,1241,1372,2433,2543,2638,2835,2881,3040
CCC count: 9
CCA: 1405,2176,2582
CCA count: 3
CCG: 1225
CCG count: 1
TCT: 2467,2531,3099
TCT count: 3
TCC: 366,534,819,1838,1922,2333,3188
TCC count: 7
TCA: 113,354,1423,1676,2661,2829,3002
TCA count: 7
TCG: (0)
AGT: 287,301,612,693,850,1115,1521
AGT count: 7
AGC: (0)
ACT: 666,1037,1142,1192,1799
ACT count: 5
ACC: 195,1451,2945
ACC count: 3
ACA: 981,1457
ACA count: 2
ACG: (0)
TGG: 1544,1657
TGG count: 2
TAT: 146,155,170,383,1809
TAT count: 5
TAC: 1047,1328
TAC count: 2
GTT: 987,2506,2608,2625,2780,2916,3068
GTT count: 7
GTC: 1618,1750,1903,2170
GTC count: 4
GTA: 2236,3093
GTA count: 2
GTG: (0)
TAA: 1893,2242
TAA count: 2
TAG: 1235,1420
TAG count: 2
TGA: 1993,2742
TGA count: 2
43) Codon Usage Bias:
About: Mumps virus, complete genome (15384bp)
VERSION: AF201473.1
CODONS & LOCATIONS:
GCT: 92,116,157,288,298,309,335,434,447,484,527,536,541,
665,719,775,880,1004,1030,1085,1097,1128,1151,1333,
1345,1364,1424,1520,1660,1854,2080,2196,2454,2457,
2508,2556,2664,2702,2840,2902,2936,3048,3108,3348,
3386,3533,3557,3578,3585,3715,3839,3843,3887,4038,
4159,4236,4245,4552,4568,4574,4661,4682,4701,4733,
4782,4855,4876,4881,4915,5029,5226,5281,5284,5334,
5426,5498,5506,5565,5817,5901,5998,6048,6059,6062,
6067,6309,6416,6478,6488,6504,6509,6579,6582,6683,
6775,6801,6848,6851,6866,6959,6996,7113,7265,7341,
7344,7517,7694,7760,7792,7887,8128,8225,8247,8338,
8385,8503,8597,8983,9010,9104,9187,9212,9452,9512,
9517,9599,9641,9763,9825,9882,9936,9985,10030,10112,
10307,10428,10458,10552,10813,10873,10880,11016,11024,
11058,11069,11210,11271,11339,11367,11441,11542,11648,
11752,11876,12143,12209,12254,12375,12393,12491,12564,
12573,12713,12751,12776,12817,12848,12891,12894,12930,
13136,13286,13376,13510,13513,13520,13717,13727,14083,
14159,14205,14231,14245,14248,14280,14297,14462,14496,
14938,15083,15107,15129,15139
GCT count: 193
GCC: 58,87,469,503,515,530,610,710,756,788,809,939,947,
1073,1299,1381,1427,1558,1594,1621,1848,1861,1911,
1976,2090,2263,2419,2444,2464,2502,2570,2607,2668,
2945,2957,3093,3144,3198,3299,3330,3459,3546,3711,
3807,3832,4048,4168,4239,4329,4371,4415,4485,4821,
4864,4912,5169,5212,5241,5299,5460,5543,5570,5588,
5608,5684,5932,6013,6257,6270,6538,6602,6619,6650,
7092,7108,7211,7326,7428,7528,7594,7639,7894,8001,
8025,8065,8174,8198,8267,8342,8432,8445,8526,8548,
8562,8696,8710,8764,8863,8888,9338,9543,9560,9564,
9681,9697,9700,9722,9732,9921,9955,10158,10184,10293,
10399,10424,10628,10841,11085,11295,11410,11504,11623,
11734,12242,12317,12486,12610,12788,13040,13112,13248,
13319,13462,13475,13685,13689,13839,13862,13892,13921,
13947,13988,13996,14420,14720,14769,14899,15266
GCC count: 148
GCA: 124,164,245,324,341,359,389,393,397,416,497,545,593,
628,745,748,764,778,871,899,971,1007,1118,1202,1250,
1266,1286,1312,1349,1414,1448,1490,1553,1564,1580,
1614,1650,1715,1763,1771,1826,1941,1972,2085,2111,
2127,2137,2152,2162,2190,2234,2238,2273,2485,2544,
2573,2576,2592,2612,2672,2706,2713,2716,2766,2787,
2967,2972,3003,3065,3077,3087,3097,3164,3230,3258,
3267,3358,3422,3529,3621,3635,3658,3677,3741,3753,
3846,3867,3901,3921,3928,3958,3963,3994,4000,4072,
4110,4134,4269,4278,4439,4579,4620,4623,4641,4653,
4795,4816,4859,4871,4897,4900,4933,4945,4951,4957,
4981,4993,5015,5044,5075,5122,5188,5245,5257,5346,
5395,5557,5593,5597,5629,5656,5677,5746,5807,5822,
5917,5954,6026,6185,6263,6274,6388,6391,6491,6534,
6659,6737,6807,6860,6969,7070,7127,7146,7218,7352,
7577,7622,7745,7829,8007,8094,8123,8139,8300,8378,
8521,8570,8588,8618,8651,8731,8735,8749,8758,8844,
8859,9007,9081,9121,9128,9207,9278,9525,9569,9572,
9653,9717,9748,9833,9855,9875,9892,10079,10130,10169,
10193,10288,10325,10345,10421,10563,10730,10739,10758,
10781,10787,10837,10850,11007,11051,11132,11333,11430,
11438,11567,11570,11591,11633,11744,11843,11865,11903,
12001,12006,12074,12134,12158,12179,12235,12283,12289,
12345,12371,12383,12469,12556,12793,12807,12827,12860,
12873,12935,12984,13050,13092,13161,13169,13189,13210,
13307,13556,13637,13877,14039,14048,14051,14061,14068,
14118,14171,14217,14347,14429,14474,14478,14618,14658,
14774,15020,15168,15244,15296
GCA count: 272
GCG: 76,172,695,727,734,863,1186,1722,2039,2360,2451,2619,
2628,2940,3069,3525,3693,3828,4114,4200,4326,4891,
4960,5035,5646,6076,6376,6381,6402,6680,7274,7371,
7418,7690,7788,8262,8394,8441,9745,9947,10493,10558,
10665,10770,10991,11363,11547,11610,11661,12191,14100,
14277,14374,14542,14642
GCG count: 55
CGT: 112,259,586,1729,1957,2864,2896,2948,2961,3412,3456,
3968,4195,4689,4840,4948,6179,6238,6243,6248,6472,
7387,7642,7988,8491,8621,9135,9941,10121,10155,10496,
10661,10808,11002,11921,12263,12532,13076,13771,13979,
14694,14812,14912
CGT count: 43
CGC: 500
CGC count: 1
CGA: 83,95,180,430,700,850,1034,1055,1205,1253,1468,1682,
1690,1932,2230,2345,2390,2633,2818,3074,3081,3101,
3116,3138,3233,3305,3366,3476,3647,3719,3822,4022,
4126,4303,4316,4461,4508,4709,5001,5198,5423,5487,
5753,6035,6141,6467,6624,6701,6713,7149,7374,7408,
7411,7555,7730,7859,8304,8467,8594,8678,8885,9247,
9412,9584,10010,10015,10672,10825,10976,11104,11351,
11869,11929,12125,12412,12433,12589,13219,13289,13338,
13414,13505,13526,13590,13630,13681,14121,14318,14389,
14394,14404,14655,14924,14935,15080,15226,15301,15307
CGA count: 98
CGG: 61,228,641,783,916,1015,1063,1123,1162,1219,1404,1654,
1914,1969,2008,2368,2492,2528,3612,3849,3891,4450,
4849,4884,4990,5481,5793,5994,6642,6903,7334,7582,
7733,7939,7998,8391,8669,8796,8815,8825,9304,9667,
9977,10333,10576,11525,11983,12106,12214,12447,13858,
13924,14092,14824,15208
CGG count: 55
AGA: 10,32,47,184,199,231,294,314,410,422,438,442,453,621,
767,833,866,890,930,1066,1076,1093,1174,1233,1245,
1256,1280,1316,1358,1462,1480,1526,1550,1567,1632,
1641,1672,1711,1780,1899,1919,2004,2022,2134,2142,
2181,2253,2364,2374,2378,2400,2408,2428,2436,2467,
2477,2489,2521,2579,2734,2755,2797,2844,2847,2888,
3010,3124,3128,3169,3195,3277,3311,3321,3353,3375,
3467,3560,3563,3595,3599,3632,3855,3864,3874,3908,
3925,3950,4014,4054,4079,4155,4204,4262,4282,4306,
4322,4380,4391,4424,4474,4489,4529,4534,4745,4766,
4837,4937,5052,5102,5148,5288,5318,5337,5342,5360,
5442,5463,5477,5510,5527,5561,5574,5708,5840,5864,
5949,6084,6091,6094,6167,6196,6202,6219,6371,6440,
6444,6481,6518,6526,6541,6570,6609,6690,6693,6829,
6834,6839,6977,7063,7176,7440,7477,7625,7678,7684,
7700,7740,7770,7815,7838,7875,7914,8081,8102,8254,
8345,8421,8435,8454,8495,8577,8602,8631,8636,8641,
8687,8691,8714,8778,8821,8879,8896,8905,8927,8976,
8999,9027,9043,9094,9178,9240,9324,9367,9405,9427,
9445,9448,9533,9613,9633,9741,9760,9786,9812,9847,
9895,9980,10000,10027,10051,10098,10104,10143,10151,
10208,10212,10228,10285,10298,10371,10374,10381,10395,
10416,10600,10748,10799,10830,10877,10912,10918,10956,
10998,11010,11094,11110,11147,11240,11306,11317,11374,
11464,11496,11581,11584,11605,11666,11669,11676,11702,
11748,11767,11802,11888,11938,11989,12061,12092,12118,
12185,12217,12223,12280,12332,12429,12501,12581,12688,
12725,12739,12974,13000,13085,13088,13165,13227,13363,
13425,13434,13534,13537,13648,13695,13731,13778,13848,
13909,13965,14027,14226,14559,14578,14593,14603,14663,
14723,14746,14755,14779,14846,14859,14944,14951,14957,
14979,15055,15090,15093,15148,15233,15342,15353
AGA count: 312
AGG: 5,119,189,203,210,213,338,350,355,604,751,794,815,
976,1323,1352,1375,1437,1455,1486,1530,1534,1718,1837,
1925,1998,2026,2067,2172,2187,2200,2207,2245,2281,
2286,2313,2335,2482,2518,2652,2689,2698,2710,2777,
2822,2885,2995,3160,3176,3362,3390,3404,3505,3606,
3953,4076,4255,4340,4362,4421,4492,4646,5009,5133,
5218,5312,5467,5909,6154,6233,6456,6552,6769,6782,
6927,7028,7171,7221,7279,7481,7507,7531,7609,7666,
7834,8044,8119,8147,8215,8610,8654,9031,9068,9376,
9459,9579,9606,9674,9677,9867,9914,9917,10061,10095,
10101,10117,10349,10469,10476,10767,10833,10972,11196,
11314,11405,11413,11419,11574,11577,11627,11683,11714,
11727,11879,12048,12056,12128,12154,12441,12705,12991,
13022,13025,13033,13213,13341,13348,13445,13448,13540,
13786,13881,14151,14155,14194,14366,14471,14493,14537,
14554,14568,14647,14766,14815,14882,15002,15157,15339
AGG count: 158
AAT: 16,38,145,220,275,319,332,401,494,506,518,523,569,
572,658,673,684,738,966,984,1105,1108,1183,1190,1388,
1458,1502,1512,1573,1625,1628,1646,1694,1748,1754,
1795,1822,1831,1842,1866,1905,1945,1986,2017,2029,
2033,2042,2062,2075,2095,2355,2387,2471,2496,2595,
2603,2729,2740,2771,2814,2870,2980,3029,3051,3059,
3152,3182,3203,3218,3225,3246,3263,3284,3327,3380,
3395,3425,3438,3490,3666,3686,3724,3733,3745,3762,
3881,3917,3936,3987,4005,4029,4059,4175,4183,4229,
4295,4376,4433,4442,4457,4468,4480,4526,4542,4606,
4612,4626,4739,4757,4762,4777,4791,4810,4942,4969,
4974,4987,5062,5081,5089,5174,5178,5182,5274,5307,
5387,5392,5418,5434,5437,5451,5456,5492,5546,5551,
5670,5868,5872,5914,5929,5939,5969,5991,6003,6087,
6112,6126,6161,6215,6225,6312,6452,6498,6565,6613,
6637,6647,6677,6791,6823,6843,6877,6881,6922,6938,
6942,6964,6980,7015,7019,7042,7046,7050,7139,7153,
7199,7204,7208,7242,7306,7331,7348,7463,7511,7546,
7559,7598,7617,7629,7646,7655,7766,7784,7811,7856,
7944,7955,8018,8029,8088,8105,8132,8153,8180,8183,
8319,8326,8372,8450,8537,8573,8725,8790,8801,8914,
8941,8954,8994,9013,9020,9151,9160,9191,9244,9342,
9401,9455,9483,9491,9625,9628,9661,9686,9691,9755,
9822,9950,9992,10071,10135,10147,10165,10173,10187,
10200,10204,10239,10248,10270,10340,10355,10358,10365,
10385,10452,10463,10505,10510,10536,10589,10634,10669,
10689,10717,10753,10857,10894,10924,11063,11080,11129,
11143,11151,11184,11207,11219,11227,11262,11303,11356,
11508,11534,11564,11756,11764,11795,11819,11840,11849,
11892,11915,11958,11977,11980,12024,12139,12174,12228,
12269,12354,12360,12421,12496,12509,12512,12520,12605,
12635,12646,12650,12654,12691,12700,12745,12763,12803,
12838,12842,12888,12961,12994,13036,13063,13097,13117,
13121,13155,13174,13277,13293,13322,13368,13407,13467,
13487,13517,13545,13597,13602,13609,13616,13674,13698,
13816,13829,13933,13955,13982,14057,14136,14209,14251,
14287,14315,14362,14399,14416,14468,14486,14517,14610,
14667,14699,14703,14709,14716,14734,14752,14758,14830,
14834,14839,14863,14928,15006,15026,15030,15041,15049,
15097,15121,15182,15217,15223,15282,15312,15334,15359
AAT count: 388
AAC: 50,192,266,302,367,562,577,705,805,887,1020,1260,1277,
1410,1419,1540,1584,1665,1707,1725,1733,1745,1760,
1812,1816,1857,2071,2278,2320,2328,2332,2403,2416,
2683,2747,2759,2914,2986,3190,3251,3470,3499,3509,
3571,3617,3654,3896,4009,4094,4130,4138,4149,4332,
4383,4430,4517,4549,4718,4729,4752,4801,4807,5021,
5086,5113,5117,5145,5154,5157,5365,5373,5577,5582,
5667,5680,5694,5732,5766,5778,5879,5895,5963,6100,
6108,6121,6209,6281,6297,6333,6364,6547,6560,6590,
6627,6932,6974,6992,7004,7103,7214,7238,7270,7297,
7393,7398,7405,7443,7674,7808,7853,7902,7934,8071,
8099,8143,8239,8295,8427,8480,8628,8781,8850,8854,
8867,8951,9040,9052,9431,9475,9508,9556,9622,9930,
9966,9974,10243,10258,10265,10313,10389,10435,10438,
10611,10714,10742,10775,10883,10886,10921,11020,11179,
11276,11309,11393,11459,11482,11485,11499,11673,11774,
11814,11829,11941,12080,12115,12310,12320,12455,12524,
12541,12672,12721,12948,13045,13183,13202,13251,13328,
13381,13399,13439,13471,13568,13587,13667,13742,13755,
13912,13930,13943,14096,14107,14125,14213,14271,14307,
14458,14490,14550,14624,14627,14731,14885,14908,14968,
14988,14999,15034,15058,15077,15270,15274,15292,15318
AAC count: 214
GAT: 23,364,419,458,487,548,596,617,638,722,799,876,1042,
1045,1138,1289,1292,1369,1475,1494,1700,1787,1807,
1982,2012,2175,2383,2636,2657,2661,2780,2783,2805,
2835,2859,2931,3017,3020,3032,3039,3105,3206,3271,
3408,3417,3448,3591,3627,3638,3650,3704,3749,3945,
4287,4412,4631,4726,5110,5349,5352,5403,5662,5761,
5800,5887,6145,6175,6427,6787,6794,6856,7079,7258,
7322,7364,7567,7822,7849,7966,8057,8413,8552,8741,
8989,9062,9170,9269,9293,9356,9390,9503,9752,9830,
9842,9901,9925,10004,10403,10406,10540,10555,10580,
10622,10637,10640,10702,10937,11027,11039,11162,11342,
11444,11518,11693,11855,11934,11948,12017,12052,12065,
12068,12239,12338,12341,12437,12460,12478,12665,12796,
12821,12845,12880,13103,13145,13453,13552,13578,13655,
13739,14032,14162,14186,14435,14606,14675,14851,14960,
14965,15173,15179,15194,15200,15363
GAT count: 153
GAC: 131,551,691,911,979,1112,1274,1303,1340,1544,1802,
2248,2425,2643,2694,2723,2867,2881,2975,3007,3521,
3550,3696,3794,3939,4064,4090,4290,4447,4908,5238,
5407,5523,5737,6251,6348,6357,6666,7022,7466,8350,
8540,8555,8674,8785,8892,9183,9259,9272,9421,9470,
9488,9944,10007,10064,10138,10310,10318,10442,10616,
10696,10899,10984,11089,11140,12020,12863,12908,13015,
13198,13529,13723,14111,14260,14621,14684,14786,15065,
15185,15212
GAC count: 80
TGT: 43,70,154,614,644,652,680,826,829,1089,1177,1270,1336,
1384,1396,2107,2116,2350,2395,2873,2891,2923,3042,
3338,3434,3515,3728,3774,3791,3801,3931,3984,3991,
4084,4224,4600,4749,4887,5093,5098,5162,5192,5328,
5379,5515,5537,5611,5615,5652,5673,5698,5704,5773,
5783,5811,5858,5979,6006,6032,6053,6138,6338,6342,
6395,6593,6670,6673,6707,6730,6760,6816,7187,7246,
7290,7377,7382,7452,7588,7661,7757,7798,7951,7959,
8036,8167,8220,8272,8279,8311,8335,8365,8397,8772,
8830,8871,8971,9058,9174,9204,9225,9310,9331,9361,
9398,9594,9778,9807,10039,10076,10179,10222,10530,
10573,10682,10725,10962,11013,11042,11077,11115,11156,
11244,11288,11298,11328,11388,11530,11638,11739,11781,
11787,11861,11972,11996,12397,12416,12586,12596,12622,
12658,12684,12913,12919,13006,13194,13234,13353,13402,
13411,13491,13677,13791,13822,13899,13950,14017,14131,
14168,14182,14197,14220,14263,14545,14573,14597,14854,
14871,14878,14891,15072,15116,15151
TGT count: 172
TGC: 14242
TGC count: 1
CAA: 160,250,329,791,1027,1070,1499,1577,1607,1687,1757,
2184,2460,2954,3026,3239,3281,3295,3318,3581,3815,
4232,4337,4436,4638,4672,4679,4698,4903,4930,5041,
5209,5254,5926,6105,6131,6460,6485,6734,6797,6884,
6935,6983,7294,7310,7485,7713,8136,8684,8901,9023,
9124,9727,9888,10449,10685,10778,10969,10988,11048,
12112,12151,12857,12980,13152,13186,13710,13976,14234,
14639,14809,15258
CAA count: 72
CAG: 649,662,836,857,936,1144,1167,1766,1938,2304,2624,
2791,2830,2906,2989,3383,3553,3674,3708,4538,4559,
4650,4978,6812,7356,8091,8769,9115,9347,10045,10232,
10816,10951,11594,11651,11760,12162,12561,13261,13373,
13819,14003,14036,14256,14274,14337,15326
CAG count: 47
GAA: 142,2910,3062,3113,4026,4523,4798,4965,5231,5484,6501,
8015,8382,8584,9793,10868,11107,11347,11522,11561,
11810,12122,12695,12758,12824,13244,13430,13884,14012,
14089,14293,15013,15103
GAA count: 33
GAG: 761,988,1158,1506,1790,2193,2537,3757,4352,4773,5554,
5634,5643,5688,5904,6873,6897,7540,7879,8361,8930,
8957,8962,9004,9035,9587,9773,9906,10034,10736,11550,
11993,12248,13621,14524,14528,15164
GAG count: 37
GGT: 29,206,461,473,670,676,714,904,908,1058,1240,1361,
1472,1697,2291,2422,2512,2524,2541,2720,2825,3543,
3973,4163,4213,4454,4832,5250,5302,5400,5983,6018,
6172,6421,6686,6721,6754,7142,7367,7422,7499,7525,
7753,7826,7890,7994,8012,8207,8946,8967,9154,9163,
9353,10196,10219,10274,10410,10517,10676,10762,11101,
11383,11962,12014,12033,12196,12731,12734,12799,13938,
13961,14042,14407,14670,14749,15134,15382
GGT count: 77
GGC: 5495
GGC count: 1
GGA: 1355,2448,2499,2811,3878,5790,6616,8545,11402,11427,
11918,13889,13927,14054,14191
GGA count: 15
GGG: 1657,1777,2439,2600,4087,4221,7255,7537,7585,8315,
8775,9289,9540,10959,11035,11266,11969,13179,14304,
15052,15113
GGG count: 21
CAT: 109,150,404,477,565,590,772,925,999,1134,1441,1591,
1618,1637,1875,1880,1948,2045,2122,2146,2168,2212,
2215,2340,2676,2801,3131,3134,3254,3341,3344,3430,
3442,3452,3482,3493,3602,3699,3767,3781,3835,4097,
4107,4121,4186,4192,4216,4357,4545,4589,4635,4843,
4922,5056,5261,5448,5714,5740,5743,5757,5855,5883,
5943,5959,6042,6072,6115,6150,6330,6514,6521,6557,
6696,6893,7054,7057,7076,7087,7158,7196,7226,7233,
7252,7471,7494,7650,7920,7926,7947,7980,8076,8202,
8229,8353,8402,8474,8488,8565,8615,8647,8704,8839,
8919,9055,9218,9286,9370,9381,9713,9736,9862,9969,
10176,10480,10483,10500,10544,10596,10708,10720,10820,
10889,10945,11055,11137,11200,11222,11256,11514,11539,
11620,11926,11966,12088,12231,12401,12475,12504,12546,
12567,12631,12831,12904,12954,13056,13108,13132,13312,
13388,13420,13626,13660,13746,13766,13794,13803,13865,
14140,14301,14382,14413,14424,14445,14506,14728,14738,
14783,14805,14974,15044,15252,15315,15323
CAT count: 173
CAC: 102,225,270,280,283,347,378,426,958,1012,1024,1195,
1327,1798,1870,2056,2223,2299,2559,2566,2585,2918,
3035,3156,3274,3496,3568,3736,3811,3978,4179,4189,
4273,4408,4722,4826,5195,5382,5530,5533,5621,5829,
5835,6430,6434,6475,6587,6763,6952,7000,7098,7123,
7134,7179,7192,7431,7474,7605,7671,7818,7984,8084,
8116,8160,8233,8236,8242,8356,8607,8923,9016,9073,
9142,9166,9318,9480,9550,9650,9706,9818,9837,9963,
10042,10190,10303,10328,10526,10792,10795,10904,11074,
11322,11721,12028,12084,12168,12259,12274,12298,12329,
12551,12675,12779,12811,13060,13070,13128,13140,13257,
13299,13356,13761,13782,13798,13902,13999,14147,14359,
14440,14502,14511,14917,15142,15255
CAC count: 124
ATT: 26,79,263,370,373,407,730,933,1141,1224,1227,1597,
1678,1922,2431,2762,2926,2998,3214,3398,3644,3671,
4033,4248,4300,4394,4403,4564,4664,4813,4867,5068,
5136,5151,5368,5431,5602,5649,5851,6188,6300,6354,
6361,6575,6631,6718,6751,6779,6890,6946,7456,7591,
7846,7864,7869,7977,8068,8112,8288,8410,8417,8518,
8580,8591,8657,8761,8833,9086,9097,9157,9262,9610,
9789,9859,9910,10022,10255,10277,10352,10784,10861,
11121,11170,11251,11336,11469,11554,11602,11708,11711,
11718,11807,11954,12286,12450,12710,12728,12876,12940,
12943,12966,12977,13205,13457,13523,13563,13594,13612,
13651,13835,14009,14266,14350,14630,14688,14794,14797,
15037,15110,15126,15203,15330
ATT count: 122
ATC: 291,812,883,1602,2053,2130,2316,2324,2744,3120,3401,
3473,3682,3689,3788,4346,4427,4497,4582,4609,4714,
5059,5265,5445,5470,5501,5720,5769,5843,5892,6009,
6097,6118,6277,6405,6727,6743,6907,6949,7007,7095,
7118,7284,7448,7872,8041,8052,8847,9222,9434,9496,
9546,9656,9802,10056,10282,10979,11214,11378,11396,
11598,11846,11896,12109,12292,12313,12406,12717,13332,
13442,13581,13633,13852,13968,14079,14144,14369,14377,
14590,14613,14633,14894,14992,15009,15061,15087,15277
ATC count: 87
ATA: 480,1051,1432,2294,2552,3147,3574,4597,4804,4954,5032,
5047,5139,5206,5626,5639,5725,5825,6291,6368,6384,
7973,8307,8499,8514,8699,8717,8807,9109,9301,9395,
9815,9870,9878,10377,10520,10649,11030,11451,11511,
11642,11770,11822,11873,12102,12147,12199,12203,12578,
12661,12867,12897,13011,13028,13079,13734,13842,13870,
14045,14103,14564,14874,15068,15188
ATA count: 64
CTT: 105,234,256,509,582,842,847,952,1039,1082,1209,1392,
1737,1894,1964,2267,2533,2649,2679,3291,3372,3539,
3588,3641,3785,4141,4503,4511,4617,4770,4786,4998,
5107,5222,5270,5717,5787,5923,5973,6164,6288,6316,
6408,6655,6746,6819,6910,6956,7012,7025,7162,7167,
7230,7262,7502,7521,7570,7720,8177,8186,8407,8720,
8744,8804,9145,9198,9231,9275,9315,9464,9536,9553,
9616,9646,9710,10083,10225,10251,10489,10568,10585,
10619,10864,10928,10942,11189,11282,11399,11454,11478,
11645,11689,11832,11885,11907,11912,12099,12303,12425,
12570,12617,12769,12782,12900,13018,13239,13643,13873,
13918,13992,14290,14310,14326,14353,14452,14678,14691,
14741,14802,14867,14920,15286,15347,15370,15379
CTT count: 125
CTC: 385,554,558,854,962,993,1401,2099,2227,2413,2646,2951,
3055,3172,3314,3369,3463,3485,3913,4251,4399,4593,
4668,5127,5415,5814,5861,6228,6284,6319,6411,6915,
6988,7084,7723,7804,7907,8170,8211,8459,8666,8911,
9090,9112,9201,9254,9521,9782,9851,10087,10091,10445,
10593,10631,10711,11259,11433,11588,12041,12182,12351,
12388,12516,12529,12627,12642,12925,13082,13125,13335,
13394,13499,13664,13702,13706,13752,13775,14333,14342,
14386,14449,14636,14652,14843,15236,15239,15374
CTC count: 87
CTA: 135,895,1214,2157,2562,3185,3324,3770,3981,4042,4101,
4209,4265,4386,4500,4657,4686,5293,5412,5701,5987,
6080,6266,6304,6606,7301,7414,7434,7459,7775,7884,
8157,8195,8284,8330,8462,8509,8661,9047,9077,9281,
9385,9416,9603,9959,10605,11126,11165,11655,11697,
11791,12045,12348,12379,12773,12834,12870,12971,13003,
13274,13280,13391,13482,13605,13896,14023,14762,14931,
14954,14984,15229,15289
CTA count: 72
CTG: 139,635,1295,1308,1320,1783,2103,2259,4349,5659,5797,
6345,6663,7183,7963,8062,8980,9441,9467,9638,9694,
9898,10068,11899,12483,12669,12755,13304,13315,13359,
14086,14202,14465,14483,14514,14533,14712
CTG count: 37
TTA: 413,942,1147,1198,1953,2308,2854,3778,3858,4019,4705,
4742,5026,5201,5357,5832,5846,5936,6038,6191,7066,
7614,7717,7779,7929,8164,8388,8477,8531,8624,8874,
8908,9131,9334,9438,9528,9670,10235,10322,10547,10679,
10907,10948,10966,10994,11066,11686,11777,12171,12188,
12251,12323,12363,12463,12535,12614,12678,12922,13222,
13254,13344,13495,13826,13905,14114,14174,14330,14410,
14586,15023,15220,15247,15350,15367
TTA count: 74
TTG: 168,465,600,624,860,1236,1451,3084,4464,4829,5215,
5473,6022,7401,7697,8558,8707,9321,9989,10413,10533,
11492,11798,11837,12335,13100,13575,13670,13692,15100
TTG count: 30
AAA: 238,818,919,1902,2371,2686,3179,3221,3502,3904,4310,
4477,4846,5946,6205,6529,7337,8189,8424,9235,9296,
10108,11360,11416,14582,14827,15261,15356
AAA count: 28
AAG: 64,1263,2615,3013,3090,3997,4365,5012,5518,7562,8752,
9767,9796,10161,11423,11613,11731,14071
AAG count: 18
ATG: 13,19,1154,1979,2001,2241,2640,2737,3445,5071,6222,
7899,7911,8291,8438,10215,10262,10392,10693,11097
ATG count: 20
TTT: 73,127,305,1115,1547,1561,1587,1675,1961,2270,3819,
3884,4144,4520,4555,4585,4852,5324,6056,6199,6424,
6766,7632,7748,7842,8049,8506,9195,9328,9995,10653,
11279,11488,12036,12951,13714,13915,14006,14074,14321,
14499,14948
TTT count: 42
TTC: 176,195,217,381,632,1407,2048,2256,2582,3308,3333,
3871,4259,5165,5277,5803,6045,6494,6597,6710,7249,
7390,8108,8250,9408,10336,10705,10933,12639,13749,
13985,14178,14356,15160
TTC count: 34
CCT: 99,1171,1445,2549,2589,2808,2964,3211,3288,3942,5130,
5142,6182,6254,6294,6724,7131,7361,7574,7970,7991,
9139,9500,10019,10432,10658,11448,11945,11951,12997,
13073,13549,13560,13973,14681,14791,14821,15191,15304
CCT count: 39
CCC: 1100,1704,1741,1751,1819,1834,2059,2983,3302,3662,
4172,5018,5078,5876,6448,7437,7801,8484,9228,10486,
10523,10608,11174,12366,12748,13758,14020,14904,14995,
15145
CCC count: 30
CCA: 2,491,742,1517,1669,1845,1929,2178,2474,2515,2726,
5185,6399,7287,7425,7658,8323,8534,8793,9576,9591,
11680,12466,12958
CCA count: 24
CCG: 7636,8259,12071
CCG count: 3
TCT: 344,823,955,2220,3804,4368,4919,5331,5540,5618,5691,
6437,6863,8681,8818,8882,11248,11371,12077,12295,12593,
13053,13502,13640,15017
TCT count: 25
TCC: 1230,1570,3512,3852,4514,5920,5966,6029,6464,11475,
11826,11882,14818
TCC count: 13
TCA: 242,802,1180,1330,1537,1611,1935,2149,2165,2505,2899,
3243,4069,4118,4152,5750,7687,7923,9619,10368,11045,
11285,12742
TCA count: 23
TCG: (0)
AGT: 53,253,1774,1891,2203,2750,2850,2877,3518,3624,3797,
4045,4242,4313,4343,4675,4692,4695,4926,5004,5296,
5605,7319,7534,7601,7727,7795,8032,8368,8470,8810,
9100,9215,9250,9265,10361,10804,10853,11192,11291,
11558,11617,12011,12472,12601,12853,12884,13067,13231,
13571,13958,14065,14521
AGT count: 53
AGC: 3141,9933
AGC count: 2
ACT: 512,655,2119,4984,5065,6158,8004,8644,8728,9065,10455,
10733,10745,11204,11230,11705,11858,12277,14165,14284
ACT count: 20
ACC: 1131,1372,4894,5729,6704,7073,10473,11784,12307,12766,
12785,13479,14971
ACC count: 13
ACA: 35,607,1851,3236,6544,6919,8836,10625,10915,12988,
13149,13385,14239
ACA count: 13
ACG: (0)
TGG: 67,1378,1483,4571,6870,7039,7514,7543,7763,10048,10466,
11724,12206,12814,13584,14223,14888,14941
TGG count: 18
TAT: 533,688,996,4418,4471,5235,5376,5585,6351,6634,6757,
7917,8022,8276,8738,8755,8986,9307,9350,9364,9770,
9799,10514,10699,11159,12165,12245,13216,13296,13720,
13832,15197
TAT count: 32
TAC: 839,1079,1509,3023,6826,7737,9703,12096,12220,13325,
14455,14706
TAC count: 12
GTT: 1048,2036,3479,3609,3825,6740,6887,7681,11118,11630,
11658,11852,12131,12266,12681,12916,13283,14432,15176
GTT count: 19
GTC: 3536,4104,5315,5711,6260,9885,11986,12326,14600
GTC count: 9
GTA: 922,1283,1523,3861,4051,5038,6134,8192,8375,13417
GTA count: 10
GTG: 450,3045,4603,4736,8150
GTG count: 5
TAA: 2794,2992,4319,6212,6900,9373,9664,12357,12409,12444
TAA count: 10
TAG: 1908,5321,5976,11325,11472,14128
TAG count: 6
TGA: 1465,2774,5898,6772,6804,7060,9118,9148,9424,12538,
13158,13845,13855,15154
TGA count: 14
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