This is an appendix to: Quantum Biology - 11
07) Codon Usage Bias:
About: Bovine parainfluenza virus 3 DNA, complete genome (15480bp)
VERSION: D84095.1
CODONS & LOCATIONS:
GCT: 22,113,168,216,261,452,648,730,790,954,992,1035,1098,
1143,1221,1237,1285,1353,1541,1796,2035,2124,2138,
2252,2405,3505,3564,3685,3806,3812,3916,3982,3997,
4007,4023,4059,4101,4191,4209,4454,4579,4630,4826,
5486,5537,5672,5677,5788,6022,6050,6065,6123,6763,
7389,7433,7461,7590,8001,8059,8357,8381,8405,8538,
9002,9296,9584,9594,9639,9823,9855,9930,9993,10012,
10131,10350,10530,10633,10636,10692,10938,10995,11114,
11201,11308,11451,11466,11493,11538,11541,11547,11646,
11799,11883,11889,12058,12270,12378,12381,12487,12549,
13019,13338,13358,13362,13646,13857,13920,13982,14022,
14100,14121,14586,14597,15014,15046,15141,15389
GCT count: 117
GCC: 72,177,315,345,351,612,906,1028,1275,1388,1424,1865,
2057,2175,2309,2452,2515,2712,3578,3809,4328,4558,
4718,5007,5013,5017,5456,6437,6905,7354,7919,7929,
8194,8229,8777,9228,9539,9911,9926,9975,10759,10891,
10965,10989,11295,11672,12072,12223,12372,14131,14789,
14844
GCC count: 52
GCA: 105,146,191,302,306,390,542,550,699,750,897,934,951,
999,1048,1067,1080,1087,1125,1148,1206,1212,1229,1280,
1312,1365,1380,1385,1449,1455,1507,1599,1641,1685,
1893,1916,1923,1956,1998,2042,2121,2172,2355,2394,
2408,2604,2691,2745,2763,2835,2894,2897,2966,2987,
3233,3392,3420,3459,3476,3481,3510,3611,3665,3739,
3753,3793,3837,4062,4203,4267,4272,4314,4502,4572,
4599,4611,4655,4677,4707,4761,4817,4884,4961,4983,
4997,5044,5052,5081,5465,5477,5480,5498,5507,5558,
5600,5669,5693,5783,6003,6081,6089,6096,6218,6242,
6395,6476,6563,6773,6800,6849,6897,6900,7021,7043,
7046,7367,7392,7412,7598,7664,7769,7772,7846,7872,
7893,7911,8107,8176,8241,8264,8408,8535,8553,8613,
8743,8751,8759,9012,9081,9127,9420,9546,9726,9748,
9774,9783,9786,9865,9936,9957,10089,10150,10197,10326,
10380,10539,10546,10751,10923,10935,11161,11262,11277,
11289,11370,11444,11571,11715,11841,11974,12101,12250,
12285,12336,12364,12393,12411,12444,12456,12592,12636,
12752,12803,12972,12990,13016,13056,13155,13263,13419,
13461,13479,13518,13527,13634,13810,14094,14109,14136,
14395,14619,14747,14802,15415
GCA count: 204
GCG: 138,742,1113,1576,2266,2682,2688,2855,2939,2957,3204,
5413,5444,8683,11208,12468,12694,13002,13303,13375,
13695,14388,14557
GCG count: 23
CGT: 141,455,1032,1215,2054,4124,4259,5168,6595,6687,6720,
7864,7969,8493,9608,10628,10645,11284,12465,13142,
13716,14468,15087
CGT count: 23
CGC: (0)
CGA: 245,293,569,690,842,1460,1502,1517,1559,1604,1762,
1870,1897,1959,2023,2030,2050,2156,2554,2574,2607,
2696,2776,2840,2970,3196,3228,3292,3307,3343,3375,
3496,3520,3532,3553,3728,3785,3923,4810,4881,4969,
5221,5226,5494,6139,6212,6447,6498,6670,6807,7201,
7209,7737,8100,8526,8672,8789,8951,9073,9136,9496,
9967,10173,10622,10829,11300,11922,12332,12425,12931,
13103,13916,14187,14348,14420,14930,15030,15318,15347
CGA count: 79
CGG: 188,380,506,979,1713,1729,1735,2338,2802,4772,5056,
5422,6358,7281,7828,7858,8236,8862,9574,9755,9962,
10176,10479,10700,10949,11180,11474,12142,12178,12313,
12730,13026,14262,14456,15082
CGG count: 35
AGA: 9,14,40,64,90,100,149,236,287,312,359,419,435,463,
468,472,487,530,695,705,710,755,787,862,871,927,940,
945,975,1056,1178,1247,1291,1303,1319,1358,1370,1403,
1480,1496,1524,1533,1551,1564,1573,1625,1665,1695,
1732,1750,1778,1801,1828,1840,1906,1947,1990,2002,
2062,2070,2075,2091,2117,2128,2135,2142,2168,2179,
2233,2256,2278,2300,2329,2351,2425,2428,2442,2459,
2482,2518,2521,2577,2586,2589,2627,2634,2652,2685,
2701,2724,2742,2790,2799,2816,2827,2830,2848,2871,
2905,2917,2922,2973,2977,3036,3042,3048,3075,3078,
3095,3098,3118,3169,3173,3183,3225,3238,3241,3252,
3317,3337,3351,3361,3371,3398,3411,3431,3473,3513,
3523,3600,3616,3628,3648,3693,3770,3829,3861,3933,
3941,3945,3968,4026,4073,4079,4086,4089,4106,4129,
4164,4170,4378,4382,4402,4409,4462,4468,4476,4513,
4516,4521,4620,4698,4740,4782,4838,4909,4919,4924,
4936,4942,4948,4965,4980,5002,5064,5072,5078,5086,
5149,5205,5289,5304,5318,5359,5382,5425,5469,5515,
5533,5543,5617,5654,5713,5755,5809,5882,5890,5930,
5977,6007,6076,6085,6183,6199,6287,6334,6493,6502,
6513,6532,6638,6647,6704,6712,6733,6781,6785,6804,
6884,6890,6994,7036,7051,7068,7075,7115,7131,7180,
7187,7217,7228,7242,7267,7295,7335,7340,7397,7468,
7522,7547,7612,7650,7657,7730,7843,7852,7902,7906,
7949,7987,8006,8027,8047,8054,8075,8093,8159,8233,
8327,8393,8467,8480,8518,8567,8580,8594,8606,8616,
8624,8660,8746,8823,8830,8849,8856,8871,8898,8931,
8939,9119,9161,9184,9216,9238,9252,9260,9275,9278,
9286,9308,9482,9506,9510,9536,9588,9617,9653,9680,
9685,9692,9704,9716,9770,9798,9894,10009,10082,10102,
10229,10238,10256,10294,10298,10310,10317,10342,10367,
10406,10427,10444,10517,10520,10570,10601,10649,10657,
10733,10768,10787,10808,10956,10979,11007,11038,11042,
11085,11184,11217,11246,11256,11347,11414,11514,11525,
11559,11601,11615,11639,11651,11704,11718,11780,11783,
11793,11820,11835,11855,11900,11937,11964,11968,11998,
12018,12037,12065,12084,12117,12152,12320,12325,12387,
12451,12493,12585,12650,12714,12719,12722,12764,12785,
12815,12827,12890,12915,12959,13022,13040,13181,13188,
13215,13226,13288,13401,13429,13470,13473,13491,13522,
13565,13569,13595,13610,13613,13745,13760,13763,13768,
13778,13792,13825,13834,13864,13887,14049,14058,14061,
14069,14073,14087,14171,14210,14251,14323,14402,14405,
14459,14518,14549,14572,14594,14670,14684,14687,14728,
14759,14765,14849,14918,14961,14979,15033,15072,15095,
15121,15155,15177,15200,15239,15311,15328,15430,15460
AGA count: 452
AGG: 56,78,83,424,431,625,665,672,676,777,833,837,878,891,
1025,1163,1167,1259,1270,1343,1375,1398,1408,1415,
1467,1705,1738,1837,1939,2088,2100,2104,2111,2205,
2244,2292,2383,2478,2490,2503,2569,2614,2647,2783,
2811,2820,2852,3178,3186,3209,3260,3285,3586,3703,
3852,3866,4045,4174,4248,4370,4391,4418,4766,4835,
4855,4863,4916,4929,5173,5197,5405,5449,5584,5659,
5686,5743,5760,5775,6046,6058,6160,6310,6349,6385,
6654,6751,6855,7031,7102,7351,7357,7458,7474,7501,
7580,7672,7680,7789,7795,7837,7946,7981,8050,8068,
8125,8197,8248,8284,8366,8446,8603,8642,8645,8912,
9048,9213,9344,9395,9399,9503,10019,10060,10244,10291,
10313,10347,10391,10424,10489,10677,10847,10871,10874,
10969,10976,11032,11067,11089,11166,11197,11427,11477,
11502,11621,11731,11817,11877,11927,12049,12110,12113,
12195,12215,12263,12278,12294,12534,12541,12631,12686,
12871,12883,13133,13184,13249,13345,13643,13686,13710,
13910,13957,13961,13986,14084,14090,14225,14237,14269,
14306,14383,14439,14614,14724,14762,14769,14907,14972,
14975,15007,15209,15266,15269,15284,15304,15379
AGG count: 195
AAT: 29,35,47,93,153,163,198,230,251,341,387,400,534,546,
566,620,724,761,770,824,923,987,1187,1225,1241,1361,
1393,1419,1486,1499,1585,1611,1622,1657,1717,1725,
1745,1793,1805,1810,1881,1963,1977,2006,2027,2078,
2084,2108,2161,2189,2200,2222,2263,2271,2361,2494,
2535,2542,2599,2619,2656,2884,2889,2901,2942,2954,
2995,3010,3027,3087,3103,3110,3123,3152,3160,3247,
3357,3389,3427,3439,3445,3603,3657,3678,3717,3734,
3789,3822,4038,4194,4216,4243,4263,4283,4298,4306,
4332,4337,4343,4347,4373,4426,4434,4492,4508,4625,
4640,4650,4662,4691,4735,4752,4778,4798,4843,4902,
4976,5107,5113,5122,5125,5146,5186,5216,5236,5298,
5349,5390,5399,5428,5431,5440,5552,5565,5569,5588,
5607,5630,5635,5647,5689,5723,5738,5769,5838,5868,
5872,5878,5887,5914,5950,5957,5965,6029,6037,6134,
6149,6164,6227,6238,6272,6284,6293,6297,6313,6319,
6346,6361,6425,6443,6480,6516,6521,6555,6568,6577,
6607,6611,6619,6634,6662,6677,6708,6728,6815,6823,
6828,6866,6911,6919,6949,6970,6983,6988,7001,7011,
7015,7027,7060,7093,7098,7105,7126,7174,7191,7237,
7246,7277,7287,7310,7345,7385,7418,7421,7426,7445,
7479,7498,7507,7565,7577,7584,7709,7717,7742,7745,
7798,7867,7943,7958,8023,8115,8131,8150,8153,8165,
8180,8201,8208,8322,8338,8363,8372,8376,8423,8470,
8474,8610,8627,8713,8724,8768,8807,8841,8845,8867,
8875,8881,8891,8904,8942,8954,8962,8978,8982,8985,
8990,8994,8998,9027,9032,9090,9102,9114,9157,9166,
9202,9234,9267,9320,9336,9353,9405,9424,9442,9446,
9465,9476,9479,9524,9603,9620,9625,9659,9666,9713,
9722,9731,9829,9843,9847,9869,9872,9907,9943,9954,
9990,10022,10027,10051,10105,10155,10207,10267,10301,
10331,10383,10396,10410,10430,10435,10457,10485,10497,
10500,10536,10566,10588,10594,10611,10660,10671,10684,
10713,10743,10775,10863,10946,10983,11016,11019,11045,
11124,11135,11147,11240,11271,11304,11359,11378,11382,
11388,11406,11430,11459,11517,11574,11610,11677,11721,
11774,11803,11825,11859,11873,11880,11911,11918,11992,
12023,12092,12126,12170,12173,12258,12340,12357,12420,
12471,12522,12557,12562,12605,12612,12618,12639,12657,
12703,12795,12810,12833,12838,12852,12856,12901,12905,
12980,12998,13032,13059,13082,13090,13146,13150,13178,
13211,13260,13314,13332,13370,13405,13413,13457,13464,
13542,13551,13588,13627,13652,13657,13721,13725,13739,
13782,13800,13806,13818,13830,13883,13926,13932,13943,
13965,14001,14029,14039,14045,14142,14151,14163,14191,
14198,14241,14259,14280,14286,14292,14310,14317,14330,
14341,14357,14398,14453,14486,14508,14580,14606,14633,
14646,14691,14694,14704,14711,14737,14753,14783,14810,
14825,14835,14886,14891,14912,14940,14955,14968,14985,
15003,15019,15038,15103,15180,15215,15248,15277,15287,
15298,15307,15337,15364,15442
AAT count: 491
AAC: 5,51,158,233,298,354,371,491,653,784,797,812,821,828,
851,882,918,959,1137,1160,1195,1255,1294,1325,1336,
1463,1514,1527,1545,1570,1589,1593,1616,1650,1653,
1700,1767,1772,1790,1910,1934,1943,1971,1984,1987,
1993,2186,2194,2320,2325,2470,2528,2532,2561,2582,
2623,2669,2678,2707,2717,2731,2767,2770,2951,3032,
3064,3192,3200,3280,3299,3331,3368,3415,3452,3455,
3574,3581,3607,3620,3624,3642,3654,3668,3698,3731,
3747,3826,3880,4048,4138,4144,4286,4367,4569,4592,
4606,4791,4795,4850,4876,4894,4898,4955,4991,5027,
5035,5038,5102,5155,5160,5189,5264,5286,5294,5307,
5387,5393,5502,5526,5627,5682,5698,5703,5719,5801,
5806,5827,5944,5993,6169,6245,6253,6256,6325,6428,
6465,6470,6486,6616,6684,6697,6746,6754,6767,6837,
6845,6863,6870,6880,6937,6940,6946,6998,7007,7109,
7145,7165,7170,7221,7321,7541,7607,7623,7633,7669,
7723,7726,7750,7761,7879,7897,7993,8033,8245,8276,
8333,8353,8390,8416,8419,8489,8499,8515,8531,8542,
8561,8583,8591,8598,8637,8690,8755,8782,8836,9020,
9174,9249,9331,9462,9563,9580,9650,9710,10067,10110,
10137,10306,10370,10386,10454,10554,10598,10688,10816,
11119,11129,11237,11252,11356,11393,11399,11484,11667,
11685,11690,11693,11711,11742,11906,11934,11948,11955,
12011,12137,12187,12209,12275,12367,12461,12500,12512,
12518,12644,12670,12683,12738,12942,13074,13085,13124,
13556,13585,13602,13670,13691,13736,13895,14233,14246,
14297,14495,14591,14638,14662,14733,14829,14861,14873,
14877,14883,14945,15068,15259,15295,15386,15400,15419,
15435,15457
AAC count: 279
GAT: 319,393,416,500,513,525,573,592,632,679,747,766,818,
894,1059,1218,1232,1251,1348,1473,1629,1668,1671,1817,
1833,2013,2216,2236,2240,2306,2342,2345,2378,2417,
2420,2640,2960,2998,3014,3020,3068,3083,3133,3145,
3220,3266,3380,3538,3557,3631,3688,3870,3886,3900,
3926,3963,3972,3975,4003,4041,4109,4112,4178,4238,
4253,4279,4457,4540,4553,4644,4866,4972,5092,5229,
5248,5282,5323,5339,5365,5452,5593,5735,5764,5779,
5852,5897,5906,6068,6234,6305,6410,6452,6508,6586,
6589,6723,6973,6979,7256,7504,7535,7571,7646,7653,
7713,7757,7976,8144,8204,8261,8312,8441,8546,8663,
8796,8799,8802,8813,8907,9039,9043,9051,9093,9108,
9207,9299,9327,9384,9429,9672,9883,9999,10056,10167,
10212,10260,10415,10614,10618,10704,10842,11025,11058,
11063,11076,11097,11100,11441,11550,11699,11758,11777,
11787,11810,11894,11930,11944,11982,12098,12122,12181,
12236,12310,12328,12346,12398,12437,12483,12615,12677,
12749,12768,12772,12798,12867,12918,12951,13005,13062,
13065,13068,13171,13191,13291,13299,13389,13443,13467,
13575,13803,13852,14064,14118,14177,14303,14463,14708,
14772,14780,14818,14868,15050,15127,15144,15150,15254,
15315,15342,15354,15360,15393
GAT count: 211
GAC: 17,126,240,254,495,716,848,1536,1741,1853,1919,1950,
2065,2401,2486,2549,2757,3166,3542,4188,4704,4804,
4820,5047,5315,5343,5437,5546,5746,5834,5843,6040,
6116,6281,6388,6413,6877,6887,6934,7079,7249,7574,
7694,7811,8014,8072,8135,8170,8571,8667,8697,9035,
9356,9519,9570,9834,9920,10032,10116,10200,10334,10447,
10451,10625,10833,10904,11814,12033,12130,12509,12733,
12936,12954,13029,13097,13203,13449,13537,13752,13902,
13946,14376,14952,15233
GAC count: 84
TGT: 203,274,334,404,538,578,603,641,736,875,964,1064,1121,
1130,1157,1490,1633,2281,2881,2910,2929,2933,3465,
3528,3546,3857,3956,3993,4094,4183,4318,4480,4497,
4565,5141,5176,5276,5362,5491,5581,5596,5623,5638,
5663,5893,5940,6107,6152,6176,6190,6202,6223,6248,
6263,6269,6338,6433,6538,6625,6691,7138,7298,7381,
7615,7628,7687,7699,7886,7972,8010,8293,8426,8453,
8505,8652,8704,8967,9140,9314,9376,9381,9417,9645,
9695,9808,10141,10144,10189,10235,10465,10665,10710,
10781,10797,10856,10952,11048,11212,11220,11318,11330,
11334,11362,11471,11497,11505,11510,11578,11591,11664,
11761,11987,12055,12106,12160,12192,12201,12218,12622,
12743,12761,12777,12965,12984,13012,13114,13282,13440,
13505,13509,13512,13631,13673,13682,13757,13787,13796,
13877,14013,14104,14112,14174,14272,14373,14411,14471,
14539,14552,14563,14625,14630,14651,14921,14926,15131,
15473
TGT count: 156
TGC: (0)
CAA: 248,290,309,376,438,644,995,1021,1134,1203,1511,1521,
1556,1582,1689,1775,1843,1981,2566,2596,2795,3113,
3493,3502,3550,3639,3815,3937,3979,3986,4067,4353,
4364,4588,4616,4846,4860,4994,5068,5165,5194,5213,
5254,5354,5409,5530,5573,5875,5924,5999,6341,6524,
6665,6673,6741,6789,6819,6852,7057,7064,7142,7198,
7487,7638,8030,8318,8621,8632,8826,8852,8859,9085,
9222,9282,9341,10099,10221,10356,10504,10576,10943,
10986,11403,11682,11767,12087,12353,12898,13121,13277,
13350,13476,13607,13821,13872,14184,14482,14611,14659,
14719,14756,14895,15188,15197,15236,15245,15383
CAA count: 107
CAG: 134,1084,1152,1428,1637,2016,2286,2368,2449,2465,2751,
2760,3569,4056,4160,4486,4684,4785,4823,4888,5610,
6120,6173,6370,6796,6957,7785,7916,8110,8120,8301,
8884,9916,10120,10716,10919,11533,12061,12247,12505,
13240,14642
CAG count: 42
GAA: 75,87,483,553,1787,1928,2225,2334,2511,2808,3107,3244,
3295,3832,3930,4413,4422,4505,4775,5666,5752,6543,
6658,8330,8895,9097,9636,9789,9816,9987,10079,10185,
10764,11790,12441,12846,13175,13815,14052,14546,15010,
15099,15108
GAA count: 43
GAG: 116,509,519,1074,1106,2925,3003,3383,3953,5902,6276,
8287,8771,9363,9642,11625,12166,12725,12788,13306,
13578,13996,14336,14786
GAG count: 24
GGT: 171,222,447,476,806,900,1071,1200,1262,2149,2506,2990,
3403,4018,4156,4442,4473,4544,4548,4731,5732,6012,
6062,6230,6549,7085,7231,7262,7307,7528,7883,7935,
7954,8043,8128,8219,9059,9169,9190,9459,9486,9900,
9903,10252,10418,10472,10726,10747,10885,11106,11230,
11326,12595,12746,12908,13046,13326,13408,14157,14181,
14361,14512,14740,14936,15226,15478
GGT count: 66
GGC: (0)
GGA: 609,1567,1647,1825,2114,2260,2348,2739,3277,4035,4465,
6490,6834,7024,7861,9473,9591,9656,13416,13454,14097
GGA count: 21
GGG: 26,174,1118,2039,5279,8040,11940,12417,13849,14283
GGG count: 10
CAT: 110,130,226,279,407,582,598,803,910,983,1307,1432,
1436,1677,1680,1783,1813,1848,1860,1873,1876,1885,
2373,2412,2661,2862,3017,3092,3138,3141,3217,3346,
3364,3442,3448,3468,3486,3721,3763,3848,4076,4133,
4153,4310,4324,4359,4439,4446,4681,4723,4757,4906,
5089,5095,5110,5116,5133,5136,5152,5326,5378,5988,
6034,6195,6322,6329,6405,6418,6574,6580,6604,6631,
6644,6916,6925,6961,7155,7161,7253,7302,7314,7371,
7404,7556,7560,7684,7782,7932,7963,8083,8214,8222,
8226,8280,8305,8341,8459,8577,8765,9178,9187,9244,
9255,9303,9514,9529,9557,9567,9766,9852,9897,9933,
9939,9947,9950,9982,10016,10164,10218,10279,10512,
10804,10836,10860,11109,11243,11281,11366,11436,11746,
11844,12079,12226,12478,12531,12574,12599,12823,12860,
12921,12969,13219,13231,13236,13436,13494,13660,13678,
13938,13977,14206,14218,14370,14424,14575,14677,14681,
14796,14949,14964,15055,15136,15206,15220,15322
CAT count: 165
CAC: 1265,1332,1340,1493,1607,1674,1756,2046,2152,2446,
2538,2611,2631,2824,3129,3213,3435,3592,3597,3634,
3661,3681,3874,4012,4031,4121,4225,4429,4534,4813,
4832,4869,4872,4913,4988,5023,5031,5098,5268,5650,
5795,5863,5917,6129,6300,6641,6777,6810,6841,6859,
6893,7004,7375,7438,7552,7702,7876,8190,8257,8271,
8397,8413,8431,8435,8477,8556,8586,8679,8718,8819,
8921,9144,9553,9759,9812,10048,10801,10825,10929,11314,
11338,11737,11914,12001,12448,12577,12602,12653,12995,
13423,13729,14035,14125,14501,14838,14995,15118,15407
CAC count: 98
ATT: 32,59,122,257,362,668,1182,1708,2213,2312,2545,2858,
2866,3052,3462,3911,4256,4275,4292,4483,4529,4595,
4710,5179,5239,5311,5416,5706,5716,5846,5857,5860,
6017,6071,6367,6391,6421,6601,6650,6831,6952,6976,
7039,7082,7151,7363,7451,7568,7603,7676,8018,8037,
8065,8138,8349,8509,8564,8700,9123,9198,9272,9293,
9323,9491,9533,9698,9840,9858,9923,9970,10003,10071,
10226,10249,10361,10373,10376,10542,10697,10736,10739,
10812,10819,10850,11187,11321,11385,11409,11480,11520,
11553,11604,11659,11960,12155,12205,12241,12582,12627,
12663,12689,12698,12710,12780,12807,12830,13053,13071,
13127,13197,13253,13320,13394,13698,13713,13843,13867,
13969,13991,14078,14146,14166,14276,14433,14436,14442,
14542,14602,14699,14852,14880,14990,15023,15077,15170,
15183,15212,15223,15281,15350,15357,15404
ATT count: 142
ATC: 183,206,338,595,662,1015,1093,1174,1411,1530,1596,
1721,1753,1856,2296,2672,2704,2734,2779,2786,2874,
3007,3302,3589,3714,3756,3773,4150,4340,4633,5128,
5953,6157,6457,6552,6943,7224,7415,7620,7779,7820,
8268,8296,8675,8693,8707,8928,8935,9111,9614,9707,
10094,10147,10160,10241,10364,10460,10559,10913,11352,
11753,12145,12253,12266,12431,12515,12527,12608,12667,
12706,12841,12977,13256,13273,13640,13705,13973,14527,
14858,15026,15059,15065,15158,15173
ATC count: 84
ATA: 412,636,865,886,1044,1297,1661,2096,2386,2748,3423,
3489,3706,4584,4671,5335,5540,5791,5984,5996,6102,
6290,6402,6717,7801,7831,8078,8086,8156,8162,8384,
8462,8733,8970,9023,9066,9130,9289,9347,9408,9676,
9780,9805,9978,10006,10075,10194,10282,10337,10493,
10605,10778,10926,10992,11029,11154,11158,11169,11433,
11447,11488,11707,11886,12052,12075,12198,12229,12349,
12384,12390,12401,12544,12863,12886,12912,12928,13107,
13159,13207,14139,14391,14428,14490,14673,14792,15438,
15445,15449
ATA count: 88
CTT: 68,219,264,269,283,516,559,586,606,615,683,845,903,
1039,1171,1328,1444,1821,2435,2980,3071,3155,3272,
3779,3905,3920,4206,4221,4449,4658,5233,5643,5823,
5921,5933,5937,6111,6399,6440,6928,7118,7121,7317,
7407,7448,7482,7595,7691,7764,7923,7996,8309,8785,
8888,9151,9317,9499,9543,9689,9739,9743,9751,10064,
10320,10400,10440,10524,10640,10653,10792,10908,11080,
11103,11190,11373,11595,11629,11632,11656,11807,11865,
12148,12232,12290,12301,12305,12406,12660,12877,12925,
13035,13164,13365,13385,13497,13501,13531,13572,13592,
13623,13666,13950,14025,14201,14256,14568,14714,15062,
15161
CTT count: 109
CTC: 331,781,972,1101,1889,1900,2164,2248,2316,2432,2558,
2675,2721,3148,3311,3674,3725,3776,3844,4213,5272,
5331,5461,5710,5911,5961,7072,7090,7184,7205,7272,
7400,7441,7939,8721,8728,9372,9763,10756,11194,11267,
11455,11829,12553,13382,13954,14523,15397,15411,15469
CTC count: 50
CTA: 97,324,562,967,1011,1966,2274,2364,2948,2984,3651,
3889,4053,4118,4350,4387,4665,4745,5820,6180,6186,
6558,7212,7429,7493,8097,8186,8502,8947,9054,9069,
9148,9433,10867,11002,11174,11530,11727,11796,11951,
11978,12069,12360,12568,12756,12820,12894,13009,13110,
13245,13433,13545,13618,13860,13891,14008,14016,14475,
14515,14805,15042,15292
CTA count: 62
CTG: 1002,1483,2665,4000,4141,4576,4647,5060,6931,7291,
7890,8710,8974,10264,10468,11233,11274,11642,11869,
12163,12184,12434,12947,13548,13732,13906,15124
CTG count: 27
TTA: 397,460,479,721,1053,1109,2019,2145,2844,3059,3742,
4167,4524,4891,5472,5604,5620,6126,6966,7194,7660,
7775,8254,8737,8833,9078,9181,9193,9219,9241,9263,
9366,9438,9468,9549,9577,9600,10124,10179,10232,10270,
10287,10668,10853,10899,10932,10960,10999,11035,11092,
11344,11544,11764,12004,12015,12028,12040,12316,12537,
12791,13137,13285,13311,13354,13515,13581,14160,14364,
14415,14655,14665,14832,14841,14902,14998,15194,15262,
15332
TTA count: 78
TTG: 589,629,937,1974,2229,2877,4015,4489,4687,6873,7538,
8104,8173,8486,9391,10585,12133,13295,13426,13534,
13599,13748,14128,14815
TTG count: 24
AAA: 44,194,1548,2208,2455,2498,3340,3709,4097,4197,4932,
4939,4945,4951,5075,6043,6316,6757,7814,7855,8648,
9009,9231,9792,9819,10086,10507,10527,10579,10730,
10894,11204,11556,13223,13880,14019,14195,14229,14345,
14958,15164,15375,15422
AAA count: 43
AAG: 441,1140,3055,3255,3959,5010,5242,5374,5510,5555,6473,
6527,6700,6736,6792,7324,7641,8740,8916,9005,9225,
9801,10035,11138,11292,12375,12673,13701,13898,14352,
15191,15425
AAG count: 32
ATG: 774,948,2438,2805,3045,3883,3949,5201,6461,6505,8793,
9210,10681,11607,11995,12046,12939,13168,13398,14300,
14313,14333,14379,14776
ATG count: 24
TTT: 328,702,913,1644,3263,5208,5245,5419,7360,7525,7753,
8062,8147,8456,8774,8924,9597,9734,9861,10038,10323,
10888,11070,11073,11151,11224,11227,11341,11635,12414,
12565,14042,14081,14327,14855,15229,15464
TTT count: 37
TTC: 1077,1191,1316,1441,3039,3782,4399,4405,4561,4713,
5578,5613,5980,6053,6092,6535,7519,7733,7823,8400,
8496,8523,8958,9413,10550,10562,10972,12474,12496,
13093,13117,15090,15325
TTC count: 33
CCT: 2183,2593,3269,4637,4728,4801,5041,6598,7532,7587,
8346,9360,9663,10839,11013,11463,13100,13194,13317,
13329,14583,14865
CCT count: 22
CCC: 428,1477,2474,2643,3407,3767,4301,4748,6026,7331,7455,
8549,10127,10215,14289
CCC count: 15
CCA: 2,727,1759,1903,2197,2391,2914,3024,3877,6209,6375,
7544,10403,10476,11832,14505,14822,15454
CCA count: 18
CCG: (0)
TCT: 119,2773,3750,3908,4289,5402,7840,8141,11862,13079,
13846,14154
TCT count: 12
TCC: 3386,12298,13663
TCC count: 3
TCA: 1953,2289,3320,3354,3561,6991,7135,7465,8315,9560,
10134,10170,10591,11259,11417,13923,15274
TCA count: 17
TCG: (0)
AGT: 384,657,794,1470,2009,2132,2303,2398,3818,3989,4082,
4115,4394,4602,4769,5182,5368,5371,5830,6205,6583,
6592,6628,6680,7259,7328,7706,8251,8483,9015,9777,
10203,10573,10582,11142,12043,12281,12428,12849,13049,
13341,13378,13446,13637,13839,14004,14213,14222,14898,
15242
AGT count: 50
AGC: (0)
ACT: 687,800,815,1090,1244,2963,3499,5119,5749,6694,8090,
8810,9063,9311,9837,10707,11311,11734,11750,12987,
13335,15147,15251
ACT count: 23
ACC: 1579,2728,3189,3334,3395,3645,3671,4807,4829,4958,
5020,5251,5396,7234,7348,7792,9154,11618,12874
ACC count: 19
ACA: 758,2525,3760,4695,5301,5549,5798,6260,6266,6770,6908,
7112,7284,7926,8360,8574,8657,10353,13935,14744,14799,
15203,15301
ACA count: 23
ACG: 931,1913
ACG count: 2
TGG: 713,733,1452,2358,2754,4537,4674,5434,6483,7834,9402,
10113,10674,10784,11581,12343,13130,13200
TGG count: 18
TAT: 348,444,522,1018,2462,3126,3163,3289,3314,4147,4321,
5849,6215,6622,7148,7158,7471,7720,7966,7984,8290,
8438,8450,8816,9105,9133,9350,9450,10482,10533,10916,
11022,11132,11396,11696,12962,13323,14032,14115,14479,
14498,14982
TAT count: 42
TAC: 868,1322,2219,3841,5562,5772,6571,7054,7378,7510,7990,
8387,8687,8762,10608,10772,10822,11598,11771,11903,
12244,14408,14622
TAC count: 23
GTT: 180,503,2081,3535,4070,4200,4668,5927,6099,6364,6546,
6760,7018,7817,9611,10182,11838,11897,12680,13043,
13649,13929,15167
GTT count: 23
GTC: 1931,2945,5483,7177,8211,9795
GTC count: 6
GTA: 556,1692,4356,6922,7490,8183,8369,8901,9369,9387,11010,
11724,12007,12571,12588,14055,14367
GTA count: 17
GTG: 1209,2637,2936,3516,4701,9669,9996,12095,14265,14320,
14933
GTG count: 11
TAA: 739,1288,4295,4788,5346,5947,8512,8878,9701,10421,
11971,12490,12647,12880,13913,14915
TAA count: 16
TAG: 4228,14560
TAG count: 2
TGA: 809,1300,1619,7849,9719,9826,11177,11249,12212,13742,
14750
TGA count: 11
08) Codon Usage Bias:
About: Influenza A virus (A/Puerto Rico/8/1934(H1N1)) segment 5, complete sequence (1565bp)
VERSION: NC_002019.1
CODONS & LOCATIONS:
GCT: 224,246,253,412,436,502,536,586,697,742,796,856,963,
1079,1116,1141,1440
GCT count: 17
GCC: 101,109,407,577,779,869,873,877,895,901,974,986,1043,
1051,1204,1256,1463,1473
GCC count: 18
GCA: 2,8,59,124,176,430,462,481,512,546,580,589,713,745,
754,823,832,1012,1039,1054,1193,1246,1265,1324,1327,
1396,1456,1522
GCA count: 28
GCG: 49,298,396,1252,1425,1459
GCG count: 6
CGT: 129,640,1277,1317,1470
CGT count: 5
CGC: (0)
CGA: 75,157,261,426,682,804,912,1094,1371,1437,1449,1466,
1533
CGA count: 13
CGG: 67,132,208,348,516,655,826,851,942,1445,1512
CGG count: 11
AGA: 15,80,86,96,104,121,180,238,268,285,314,337,340,361,
384,387,491,674,691,706,772,776,807,844,922,948,958,
994,1004,1019,1062,1069,1108,1126,1160,1189,1216,1241,
1289,1309,1344,1351,1399,1404,1407,1515,1543
AGA count: 47
AGG: 203,265,305,324,499,529,549,565,568,597,628,667,726,
789,926,1089,1097,1210,1224,1366,1381,1421,1497,1526
AGG count: 24
AAT: 19,42,117,138,150,171,271,275,390,399,415,418,469,
475,519,609,620,649,731,793,945,990,1000,1137,1147,
1153,1169,1234,1260,1294,1339,1374,1492,1519,1537,
1548
AAT count: 36
AAC: 188,220,228,318,365,555,606,658,687,738,970,1025,1184,
1228,1238,1271,1314
AAC count: 17
GAT: 91,141,196,213,357,453,456,478,523,543,615,633,645,
652,759,763,929,1035,1386
GAT count: 19
GAC: 34,379,444,495,784,890,1306,1360,1483
GAC count: 9
TGT: 507,533,710,880,884,980,1031,1410,1556
TGT count: 9
TGC: (0)
CAA: 39,55,63,217,594,636,723,748,766,861,967,1086,1172
CAA count: 13
CAG: 192,294,1283
CAG count: 3
GAA: 703,919,1113,1150,1390
GAA count: 5
GAG: 30,799,1130,1430,1488
GAG count: 5
GGT: 12,145,243,421,439,583,612,624,670,848,908,1101,1196
GGT count: 13
GGC: 404
GGC count: 1
GGA: 154,282,302,574,679
GGA count: 5
GGG: 1336,1347
GGG count: 2
CAT: 45,165,289,369,450,717,837,1083,1355,1377
CAT count: 10
CAC: 22,26,813,1015,1122,1178,1332
CAC count: 7
ATT: 694,840,1046,1074,1505
ATT count: 5
ATC: 308,488,1007,1500
ATC count: 4
ATA: 331,1207
ATA count: 2
CTT: 71,184,373,485,915,953,1301,1415,1434,1479,1509
CTT count: 11
CTC: 249,539,559,933,1297
CTC count: 5
CTA: 162,311,820,937,1066,1163,1274,1561
CTA count: 8
CTG: 113,459,663,1200
CTG count: 4
TTA: (0)
TTG: 257,472,602,1058,1181
TTG count: 5
AAA: 5,135,345,351,751,1452
AAA count: 6
AAG: 393,977
AAG count: 2
ATG: 200,887,1156,1321,1363
ATG count: 5
TTT: 816
TTT count: 1
TTC: 465,552,734,1119,1133,1476
TTC count: 6
CCT: 279,328,562,866,1553
CCT count: 5
CCC: 526,1104
CCC count: 2
CCA: 168,997
CCA count: 2
CCG: (0)
TCT: 571,720,810,829,1249,1280
TCT count: 6
TCC: 52,1144,1418
TCC count: 3
TCA: 447
TCA count: 1
TCG: (0)
AGT: 904,1219,1393,1529
AGT count: 4
AGC: (0)
ACT: (0)
ACC: 1213,1231
ACC count: 2
ACA: 983
ACA count: 1
ACG: 433
ACG count: 1
TGG: 83,321,1028,1166
TGG count: 4
TAT: 376,700
TAT count: 2
TAC: 334,1268,1286
TAC count: 3
GTT: (0)
GTC: 1022
GTC count: 1
GTA: 898,1175
GTA count: 2
GTG: 354,769
GTG count: 2
TAA: 1540
TAA count: 1
TAG: (0)
TGA: (0)
09) Codon Usage Bias:
About: Hepatitis C virus complete genome sequence (9379bp)
VERSION: AJ000009.1
CODONS & LOCATIONS:
GCT: 193,232,286,468,526,553,612,710,738,839,867,889,895,
944,1037,1047,1059,1075,1116,1129,1144,1191,1279,1351,
1429,1449,1512,1517,1560,1580,1635,1644,1661,1697,
1720,1747,1760,1847,1907,1932,1935,1976,2078,2117,
2166,2241,2307,2316,2319,2322,2346,2374,2487,2525,
2538,2541,2554,2644,2667,2689,2709,2718,2724,2730,
2767,2847,2889,2973,2994,3000,3009,3027,3034,3067,
3075,3109,3133,3144,3415,3581,3653,3704,3812,3831,
3850,3868,3871,4012,4048,4060,4112,4189,4339,4350,
4359,4369,4530,4534,4542,4564,4639,4652,4718,4775,
4883,4895,4900,4911,4945,5113,5119,5163,5175,5196,
5205,5275,5307,5335,5401,5493,5520,5529,5557,5560,
5599,5654,5724,5773,5785,5806,5865,5885,5902,5910,
6058,6078,6091,6189,6201,6227,6239,6252,6306,6318,
6567,6580,6583,6676,6711,6774,6846,6880,6891,6923,
6931,6994,7098,7215,7362,7366,7385,7478,7558,7577,
7606,7641,7671,7782,7819,7851,7886,7940,7959,8050,
8101,8228,8246,8346,8358,8433,8444,8494,8502,8520,
8664,8678,8764,8779,8805,8884,9037,9106,9111,9133,
9149,9202,9238,9290,9342,9365
GCT count: 200
GCC: 65,93,120,159,200,218,236,261,274,296,374,435,446,
530,547,558,573,636,647,715,748,763,766,772,831,1005,
1066,1103,1186,1206,1211,1256,1315,1375,1397,1402,
1459,1502,1542,1600,1639,1679,1693,1700,1773,1800,
1859,1953,1956,2021,2066,2098,2124,2248,2312,2349,
2521,2548,2560,2563,2602,2647,2706,2749,2842,2881,
2930,2938,3004,3014,3018,3051,3116,3148,3202,3212,
3240,3334,3367,3437,3461,3470,3577,3595,3599,3657,
3663,3733,3752,3776,3792,3836,3912,3976,4000,4044,
4099,4102,4225,4249,4277,4363,4374,4395,4420,4459,
4505,4550,4583,4755,4845,4917,4921,4968,4976,5015,
5032,5095,5107,5169,5184,5212,5329,5345,5397,5458,
5497,5539,5590,5667,5707,5720,5776,5797,5800,5818,
5827,5836,5852,5917,5943,5977,5995,6044,6129,6142,
6173,6234,6324,6356,6410,6468,6527,6549,6659,6665,
6724,6813,6919,6935,6948,7009,7179,7194,7265,7285,
7351,7399,7423,7437,7488,7506,7624,7644,7696,7718,
7843,7870,7924,8039,8046,8054,8134,8144,8200,8317,
8326,8335,8411,8417,8476,8485,8585,8605,8623,8640,
8829,8905,8929,9044,9066,9076,9091,9136,9146,9269,
9280,9305
GCC count: 208
GCA: 51,90,320,329,440,492,542,584,593,604,780,817,908,
952,956,970,987,1093,1215,1235,1274,1312,1329,1577,
1584,1610,1757,1785,1792,1959,1964,1994,2048,2088,
2144,2172,2183,2251,2255,2340,2421,2461,2503,2590,
2608,2615,2663,2683,2743,2770,2862,2895,3085,3089,
3161,3192,3232,3384,3403,3449,3517,3692,3701,3767,
3846,3857,3878,4028,4034,4051,4057,4135,4214,4307,
4313,4345,4398,4454,4537,4630,4765,4779,4790,4805,
4814,4853,5178,5263,5267,5297,5326,5357,5375,5490,
5532,5547,5586,5613,5650,5680,5686,5698,5822,5843,
5846,5893,6019,6022,6036,6063,6120,6145,6278,6392,
6399,6421,6479,6482,6492,6514,6533,6635,6714,6734,
6871,6968,7026,7189,7257,7382,7412,7637,7661,7709,
7714,7725,7752,7847,7919,7999,8042,8233,8394,8422,
8497,8513,8700,8707,8714,8810,8992,9166,9332
GCA count: 153
GCG: 2,58,71,133,214,224,254,290,401,462,486,507,663,672,
707,785,806,973,1001,1010,1063,1079,1126,1166,1369,
1393,1463,1498,1505,1669,1686,1805,1819,1892,1950,
2015,2114,2228,2274,2509,2513,2593,2680,2699,2777,
2783,2933,3063,3099,3209,3226,3286,3295,3298,3393,
3432,3535,3551,3673,3756,3761,3892,3898,3939,4025,
4120,4330,4570,4610,4661,4785,4842,4891,4941,5003,
5059,5086,5315,5338,5360,5551,5608,5633,5833,5881,
5906,5933,5936,6030,6085,6096,6137,6148,6360,6381,
6573,6606,6708,6730,6809,6885,6961,7023,7037,7052,
7105,7135,7138,7149,7174,7357,7409,7417,7526,7550,
7627,7654,7674,7722,7798,7804,7894,8018,8082,8090,
8178,8355,8402,8426,8429,8447,8482,8528,8558,8578,
8581,8758,8767,8842,8973,9072,9205,9248
GCG count: 143
CGT: 87,310,317,361,387,414,499,625,741,912,990,1033,1107,
1119,1152,1182,1323,1356,1885,1901,1929,2012,2027,
2412,2418,2481,2598,2774,2793,2954,3082,3123,3164,
3168,3188,3243,3648,3676,3795,3915,4080,4091,4095,
4199,4353,4356,4392,4590,4596,4617,4620,4626,4752,
4971,5132,5229,5289,5568,5811,5913,6003,6012,6108,
6151,6248,6462,6488,6627,6651,6786,6976,7131,7242,
7341,7394,7467,7475,7545,7569,7572,7595,7779,7833,
7902,7944,8061,8085,8112,8150,8281,8523,8541,8544,
8737,9234,9277
CGT count: 96
CGC: 465,3660,4772,8697,9103
CGC count: 5
CGA: 166,332,483,537,693,935,939,1099,1110,1484,1710,1713,
1881,2094,2266,3217,3337,3489,3725,4146,4292,4410,
4527,4604,4680,4710,4745,4748,4860,5223,5294,5412,
5439,5478,5952,6219,6681,6816,6852,6981,7092,7102,
7171,7389,7404,7443,7449,7452,7464,7518,7583,7764,
8184,8322,8438,8491,8516,8535,8590,8655,8684,8703,
9283,9352
CGA count: 64
CGG: 113,140,152,170,300,398,561,744,790,834,918,996,1015,
1223,1265,1339,1470,1487,1523,1763,1823,1925,2037,
2072,2083,2120,2433,2444,2740,2758,2786,2923,3317,
3669,3707,3746,3818,3842,3865,3883,3947,3956,3983,
4020,4184,4379,4385,4547,4554,4579,4649,4835,4850,
4868,4931,5181,5354,5391,5523,6006,6243,6281,6328,
6335,6447,6495,6524,6545,6632,6692,6748,6771,6821,
7235,7250,7260,7306,7319,7530,7601,7774,7890,7906,
8154,8261,8367,8561,8600,8631,8693,8761,8925,9088,
9359
CGG count: 94
AGA: 17,117,206,227,313,349,410,476,654,1220,1553,1683,
1769,1916,2009,2271,2299,2304,2334,2405,2568,2762,
2878,2970,3263,3269,3350,3381,3428,3479,3587,3636,
3986,4031,4159,4334,4437,4489,4514,4517,4614,4635,
4742,4761,4810,4839,4925,4980,5000,5028,5048,5064,
5283,5444,5451,5513,5939,6134,6161,6197,6299,6387,
6425,6875,6990,7031,7118,7142,7162,7218,7313,7332,
7373,7632,7730,7747,7790,7836,7839,7873,7965,8003,
8028,8070,8093,8096,8213,8270,8329,8352,8532,8571,
8649,8717,8774,8782,8910,8918,9023,9082,9094,9173,
9255
AGA count: 103
AGG: 33,99,162,281,304,383,451,472,590,667,686,756,769,
800,822,1069,1229,1433,1594,1724,1826,2140,2207,2212,
2288,2293,2439,2660,2796,2885,3047,3072,3340,3346,
3485,3497,3606,3641,3809,3995,4040,4065,4073,4171,
4415,4481,4801,4822,4936,4962,5110,5208,5416,5432,
5483,5516,5814,5861,6053,6256,6371,6457,6562,6587,
6599,6668,6695,6718,6767,6898,7070,7109,7112,7159,
7229,7458,7499,7553,7565,7733,7787,7898,7952,8009,
8034,8288,8391,8507,8614,8845,8888,9018,9031,9049,
9122,9130,9324,9377
AGG count: 98
AAT: 155,197,676,826,1245,2111,2468,2587,2917,2976,3129,
3524,3621,3631,3961,4263,4644,5142,5252,5487,5504,
5576,6339,6656,6782,7077,7154,7293,7472,7651,7880,
7980,8197,8207,8295,8303,8383,8452,8964,9028,9195
AAT count: 41
AAC: 36,137,188,341,354,364,370,512,811,949,1024,1072,1297,
1423,1547,1567,1573,1591,1606,1624,1666,1751,1878,
1942,1945,1990,2032,2053,2191,2234,2331,2572,3042,
3425,3547,3930,4087,4153,4284,4405,4429,4473,4561,
4687,4704,4954,5054,5068,5187,5247,5501,5510,5623,
5674,5735,5752,5780,5965,6073,6103,6402,6474,6498,
6511,6553,6737,6778,6800,7012,7042,7066,7204,7684,
7701,7823,7909,7930,7974,8024,8398,8565,8645,8670,
8797,8891,8894,9053,9160,9179,9185,9226,9349,9368
AAC count: 93
GAT: 184,278,608,981,1159,1169,1285,1290,1293,1360,1440,
1446,1676,1689,1986,2296,2391,2532,2535,2544,2904,
3370,3389,3736,4228,4270,4382,4440,4677,5137,5379,
5637,5694,5765,6069,6081,6213,6259,6273,6616,6700,
6751,7198,7513,7611,7984,8139,8414,8667,8850,8856
GAT count: 51
GAC: 533,718,879,976,1021,1474,1615,1875,2061,2133,2152,
2262,2281,2506,2755,2811,2983,3156,3175,3196,3220,
3256,3289,3307,3362,3475,3561,3684,3728,3904,4255,
4288,4324,4669,4723,4794,4830,4888,5082,5278,5349,
5535,5872,5956,6223,6268,6288,6292,6434,6639,6646,
6895,6997,7084,7329,7432,7744,7854,8174,8239,8254,
8275,8311,8379,8575,8610,8635,8740,8859,8953,9217
GAC count: 71
TGT: 29,42,84,245,265,431,459,617,874,923,930,960,1138,
1148,1173,1240,1443,1563,1780,1812,1829,1841,1863,
1866,2187,2216,2220,2278,2353,2378,2429,2451,2478,
2518,2528,2631,2641,2816,2900,2958,3060,3092,3246,
3301,3327,3541,3554,3564,3697,3875,3909,4127,4237,
4267,4424,4522,4623,4684,4693,4769,4827,4856,4874,
5042,5102,5152,5270,5370,5387,5618,5657,5747,5868,
6039,6126,6284,6415,6438,6594,6825,6941,7019,7323,
7586,7691,8218,8308,8464,8488,8551,8688,8822,8837,
8914,8932,9099,9116,9142,9221,9272,9299,9321
TGT count: 102
TGC: 905,3749,5455,6016,6945,7621,8826
TGC count: 7
CAA: 346,357,390,522,1348,1856,2551,2991,3502,3584,3602,
4131,4327,5218,5580,6315,6441,7281,7370,7446,8210,
8258,8387
CAA count: 23
CAG: 1838,2163,2238,2244,3031,3467,3611,3789,4316,4673,
5012,5092,5099,5116,5641,5793,6208,6310,7811,8131,
8161,8332,8792,9006,9211
CAG count: 25
GAA: 54,503,901,3102,3141,3773,5148,5419,6754,6957,7063,
7123,7794,8472,8554,8899,9356
GAA count: 17
GAG: 81,144,239,422,967,1385,2473,2557,2780,2833,3919,4273,
4879,4990,5318,5394,5554,5596,5897,6374,7006,7057,
8720
GAG count: 23
GGT: 128,250,268,406,418,599,628,682,728,862,1041,1301,
1365,1416,1494,1526,1631,1727,1732,1834,1869,1970,
2000,2043,2129,2148,2343,2386,2448,2577,2580,2651,
2670,2802,2855,2858,2961,3024,3096,3152,3304,3320,
3445,3507,3720,3823,3888,4141,4167,4231,4234,4798,
4904,5226,5286,5304,5364,5571,5769,5830,5961,6000,
6009,6100,6365,6576,6609,6705,6789,6794,6831,6834,
6902,7254,7538,8079,8115,8181,8193,8371,8983,9060,
9230,9241,9293,9302,9327
GGT count: 87
GGC: 760,777,2727,3574,4246,5992
GGC count: 6
GGA: 1922,2415,2605,2677,3927,4342,4486,5448,5858,5890,
6418,7226,7316,7503,7598,7761,7949,7962,8204,8661,
9127,9362
GGA count: 22
GGG: 443,456,644,1123,1155,1372,1382,1419,1490,1539,1872,
1910,1913,2018,2040,2223,2926,3112,3281,3343,3492,
3770,4117,4243,4997,5671,5760,6049,6384,6612,7509,
8076,8771,9251
GGG count: 34
CAT: 14,324,690,704,723,732,882,984,1260,1413,1535,1587,
1707,1737,1982,2159,2199,2395,2409,2611,2655,2871,
2943,3021,3039,3078,3138,3178,3273,3312,3408,3453,
3571,3689,3741,3827,3965,3989,4003,4138,4176,4194,
4299,4467,4476,4497,4599,4737,5025,5129,5157,5244,
5256,5259,5367,5406,5475,5628,5712,5928,6180,6353,
6396,6453,6507,6662,6761,6806,6843,6864,6965,7002,
7182,7268,7485,7647,7678,7864,7935,7992,7995,8364,
8675,8814,8817,8874,8967,8980,9041,9085,9258
CAT count: 91
CAC: 6,11,21,48,149,380,620,1050,1056,1197,1270,1304,1308,
1378,1480,1509,1653,1657,1851,1888,2004,2106,2196,
2328,2361,2364,2382,2401,2735,2819,2822,2874,2965,
2988,3205,3276,3411,3456,3513,3521,3615,3627,4009,
4017,4179,4206,4389,4492,4698,4734,4914,4958,4984,
5019,5035,5123,5237,5462,5661,5690,5703,5715,5727,
5730,5949,6117,6156,6183,6205,6231,6405,6429,6519,
6536,6622,6642,6797,6837,7047,7211,7274,7298,7338,
7455,7614,7681,7737,7768,7968,8121,8265,8349,8733,
8745,8748,8785,8832,8863,8948,8999,9189,9265,9371
CAC count: 103
ATT: 1409,1844,2258,3119,4258,4432,4508,4574,5342,6501,
6557,6684,8157
ATT count: 13
ATC: 335,517,850,1250,1326,1342,2464,2692,4156,4462,5383,
5755,5875,5980,7128,7232,7461,7830,7914,8278,8408,
8548
ATC count: 22
ATA: 123,1096,1754,1904,2424,2851,2865,5201,5683,5738,6025,
8338,8652,8724,9261
ATA count: 15
CTT: 45,176,180,479,569,700,842,858,1133,1200,1455,1530,
1742,2102,2202,2358,2457,2490,2494,2625,2808,2997,
3057,3181,3376,3400,3442,3527,3681,3712,3717,3804,
3815,3861,3951,4446,4665,4731,4928,5007,5233,5425,
5467,5471,5593,5646,6344,6687,6915,6926,6954,7088,
7346,7377,7495,7535,7667,7956,8013,8073,8104,8125,
8458,8469,8595,8755,8868,8878,8986,9069,9156,9316
CTT count: 72
CTC: 109,577,632,651,752,846,1029,1162,1203,1336,1621,1796,
1939,2398,2454,2497,2584,2620,2713,2839,2914,2947,
2950,3185,3223,3330,3355,3397,3420,3510,3781,3798,
3944,3968,4203,4222,4281,4558,5126,5323,5677,5743,
5946,5971,5983,5987,6166,6540,6742,6858,6905,6912,
6984,7015,7247,7289,7301,7427,7482,7522,7704,8118,
8166,8619,8789,8871,8937,8960,8977,9012,9310
CTC count: 71
CTA: 62,338,1085,1088,1318,1650,1776,1788,1898,2175,2368,
2868,3592,3801,3923,3935,4006,4037,4209,4295,4449,
4727,4818,4951,5076,5543,6123,6745,6971,7239,7277,
7541,7590,7877,7988,8222,8441,8727,8881,8922,8956,
9313,9336
CTA count: 43
CTG: 796,1390,1603,1628,1673,1997,2169,2284,2500,3358,3532,
4084,4108,4163,4303,4321,4987,5301,5332,5878,6303,
7081,8171,8802
CTG count: 24
TTA: 74,426,1333,3171,4655,5921,5968,6176,6331,6348,6602,
7814,8057,8298,8361,9009,9182
TTA count: 17
TTG: 210,679,1466,2752,3236,3558,4310,4586,5604,5840,5855,
6193,6264,7354,7657,7883,8285,8314,9056,9214
TTG count: 20
AAA: 257,1550,5166,6444,7309,8031,8902
AAA count: 7
AAG: 3895,5924,7801,8341
AAG count: 4
ATG: 68,581,587,1919,2696,2703,3259,4907,6378,7115,7185,
7687,8006,8108
ATG count: 14
TTT: 1113,1176,1436,2635,2789,2979,3249,4500,4713,7740,
8250,8995
TTT count: 12
TTC: 394,853,1717,2638,2836,3252,4219,4863,4993,5038,5071,
5564,6088,6295,6450,6619,6671,6840,6951,7145,7165,
7826,8065,8188
TTC count: 24
CCT: 496,1179,2058,2137,2180,2628,2674,2721,3645,3839,5079,
5193,5974,6321,6530,7223,7326,7758,8128,8147,8376,
8538,8658,8681,8730,9153,9339
CCT count: 27
CCC: 25,103,106,221,657,885,993,1053,1704,1816,2024,2091,
2907,2910,3666,3785,3971,4149,4402,4443,5045,5241,
5788,6113,6504,6855,6908,6987,7095,7168,7207,7440,
7491,7858,8243,8626,8751,9015,9119,9286,9345
CCC count: 41
CCA: 927,1345,1557,2069,3126,3266,3618,4511,4607,4701,4758,
5022,5051,6170,6186,6861,7618,7808,7861,8568,9003,
9176
CCA count: 22
CCG: 660,1253,2371,4658,6727,8711,9199
CCG count: 7
TCT: 307,871,2799,4240,5664,7060,8479,8853
TCT count: 8
TCC: 96,735,892,1082,1141,1618,1895,3992,4871,5409,6764,
6803,8021,9192,9208,9374
TCC count: 16
TCA: 1520,3464,5507,5803,6758,8970,9296
TCA count: 7
TCG: 1973,6033,7867
TCG count: 3
AGT: 293,640,3105,3373,4707,5310,5435,6590,6828,6938,7074,
7561,7755,8291
AGT count: 14
AGC: 1044,8989
AGC count: 2
ACT: 271,1232,1406,1452,1597,1967,2075,2805,2892,3292,4077,
7664,8510,9139
ACT count: 14
ACC: 367,566,697,1477,1570,1766,2156,3324,3482,3538,4105,
4366,5190,5429,7420,7977,8455,9063
ACC count: 18
ACA: 3764,4070,4124,4690,6368,6485,6868,8461,9245
ACA count: 9
ACG: 803,4782,5160
ACG count: 3
TGG: 203,550,596,1282,1426,2231,3199,3854,6465,7034,8225,
9079,9163
TGG count: 13
TAT: 78,814,898,964,1809,2436,2686,3568,4054,4252,8236
TAT count: 11
TAC: 39,1226,2746,3980,4948,5089,5172,6721,6849,7201,7271,
7771
TAC count: 12
GTT: 793,1194,1647,2484,2920,4965,5526,7580,7927,8405
GTT count: 10
GTC: 173,377,489,915,2325,3544,4593,5215,5422,7335
GTC count: 10
GTA: 1979,3054,3624,4567,9169
GTA count: 5
GTG: 1018,2337,3229,3901,5145,5583,6066,6570,9034
GTG count: 9
TAA: 6216,6471
TAA count: 2
TAG: 242,5849,6888
TAG count: 3
TGA: 4470,7971
TGA count: 2
10) Codon Usage Bias:
About: Influenza A virus (A/Puerto Rico/8/1934(H1N1)) segment 6, complete sequence (1413bp)
VERSION: NC_002018.1
CODONS & LOCATIONS:
GCT: 267,454,471,507,541,545,585,722,976,1208,1217,1237,
1356
GCT count: 13
GCC: 82,124,332,387,433,444,457,669,709,726,878,1232,1346,
1364
GCC count: 14
GCA: 8,92,166,196,235,277,289,361,404,516,522,535,579,604,
786,832,850,863,928,973,1002,1145,1158,1297,1300
GCA count: 25
GCG: 2,953,1183,1293,1315
GCG count: 5
CGT: 258,314,475,481,730,1193
CGT count: 6
CGC: (0)
CGA: 712,749,871,893,1263
CGA count: 5
CGG: 71,464,502,554,941,1007,1352
CGG count: 7
AGA: 34,281,294,311,327,429,492,569,637,656,745,854,962,
1077,1090,1118,1148,1220,1271,1334,1349
AGA count: 21
AGG: 98,208,308,383,424,441,563,633,648,754,760,805,917,
1015,1029,1052,1056,1175,1214,1257
AGG count: 20
AAT: 20,24,30,38,41,56,77,86,95,102,107,113,131,161,192,
285,358,396,411,449,486,499,551,557,573,595,608,641,
664,678,698,737,769,783,792,808,858,914,1038,1107,
1249,1253,1280,1320
AAT count: 44
AAC: 44,137,150,174,215,230,548,600,611,617,900,948,968,
1198,1211,1277,1397
AAC count: 17
GAT: 52,119,224,531,705,717,825,839,906,996,1018,1049,1094,
1101,1111,1125,1167,1326
GAT count: 18
GAC: 365,377,399,416,701,945,1115,1121,1163,1286,1377
GAC count: 11
TGT: 60,249,320,345,419,461,525,672,687,816,843,847,886,
988,992,1043,1139,1151,1154,1224,1311,1331,1388,1404
TGT count: 24
TGC: (0)
CAA: 147,171,305,734,897,959,1061,1392
CAA count: 8
CAG: 220,985,1070
CAG count: 3
GAA: 142,468
GAA count: 2
GAG: 1142,1187,1359
GAG count: 3
GGT: 13,65,203,262,300,511,681,867,935,981,1035,1084,1171,
1244,1339
GGT count: 15
GGC: (0)
GGA: 576,757,999,1260
GGA count: 4
GGG: 883
GGG count: 1
CAT: 47,153,179,241,254,323,528,620,923,1024,1080,1373
CAT count: 12
CAC: 212,351,652,798,1370
CAC count: 5
ATT: 89,127,227,238,297,339,590,644,1367
ATT count: 9
ATC: 910,1201
ATC count: 2
ATA: 270,920,1180,1227
ATA count: 4
CTT: 246,335,368,436,889,1306,1342
CTT count: 7
CTC: 110,1136
CTC count: 2
CTA: 694,766,1267,1409
CTA count: 4
CTG: 157,200,393,661,903,1204,1241,1283
CTG count: 8
TTA: 16,390,691,763
TTA count: 4
TTG: 354,496,629,780,1046,1087,1097
TTG count: 7
AAA: 5,623,1274
AAA count: 3
AAG: 626,835,1064,1131,1380
AAG count: 5
ATG: 116,802
ATG count: 2
TTT: 317,371,740,938,1021,1190,1303
TTT count: 7
TTC: 407,560,812,1073
TTC count: 4
CCT: 789,822,1104,1401
CCT count: 4
CCC: 478
CCC count: 1
CCA: 27,380
CCA count: 2
CCG: 829,875
CCG count: 2
TCT: 348,374,795
TCT count: 3
TCC: 566,956
TCC count: 2
TCA: 134,342,489,684,1067
TCA count: 5
TCG: (0)
AGT: 68,519,1010,1128,1290,1323,1384
AGT count: 7
AGC: (0)
ACT: 74
ACT count: 1
ACC: 183
ACC count: 1
ACA: 274
ACA count: 1
ACG: (0)
TGG: 538,932,965
TGG count: 3
TAT: 1032
TAT count: 1
TAC: 819
TAC count: 1
GTT: (0)
GTC: (0)
GTA: 675
GTA count: 1
GTG: 582
GTG count: 1
TAA: (0)
TAG: (0)
TGA: 614
TGA count: 1
11) Codon Usage Bias:
About: Thogoto virus segment 2, complete sequence (2212bp)
VERSION: NC_006495.1
CODONS & LOCATIONS:
GCT: 14,45,76,110,194,283,287,317,352,361,376,535,589,755,
874,916,997,1189,1231,1261,1696,1728,1908,1911,1964,
2017,2032,2051,2086,2092
GCT count: 30
GCC: 86,103,223,313,437,489,510,574,806,844,869,878,969,
1005,1132,1413,1475,1536,1598,1619,1712,1767,1776,
1876,1903,2073,2199
GCC count: 27
GCA: 2,117,131,216,252,269,371,381,387,391,428,521,669,
714,765,803,882,886,902,962,1064,1170,1176,1185,1235,
1273,1314,1377,1401,1418,1490,1529,1552,1584,1592,
1631,1640,1682,1741,1757,2045,2058,2163
GCA count: 43
GCG: 515,558,921,924,1343
GCG count: 5
CGT: 106,526,982,1182,1221,1276,1454,1471
CGT count: 8
CGC: (0)
CGA: 357,561,601,820,1147,1224,1355,1480,1500,1664,1750,
1786,1815,2026,2119
CGA count: 15
CGG: 99,1567,1931,2061
CGG count: 4
AGA: 49,122,128,139,152,175,189,199,207,226,229,302,442,
445,463,476,479,538,543,565,592,595,607,613,616,629,
646,673,676,690,695,724,728,743,776,796,811,856,859,
913,931,958,992,1075,1112,1126,1138,1253,1258,1281,
1317,1327,1347,1429,1522,1604,1655,1675,1763,1783,
1789,1802,1859,1872,1881,1891,1937,1978,1981,1985,
1994,2041,2066,2070,2079,2103,2124,2130,2133
AGA count: 79
AGG: 10,72,94,211,219,244,384,416,637,641,734,746,853,910,
1000,1078,1096,1157,1267,1426,1645,1658,1707,1799,
1836,1947,2147
AGG count: 27
AAT: 25,56,148,162,182,293,306,327,470,484,704,790,824,
864,941,1018,1031,1129,1160,1195,1207,1398,1443,1516,
1541,1573,1626,1679,1703,1917,1934,2158
AAT count: 32
AAC: 7,20,29,143,419,493,717,740,889,1101,1116,1214,1310,
1338,1368,1382,1436,1511,1562,1577,1613,1651,1811,
1820,1868,1953,1973,2012
AAC count: 28
GAT: 52,258,340,529,598,772,800,814,1015,1240,1289,1330,
1408,1423,1546,2137,2204
GAT count: 17
GAC: 290,394,448,581,649,686,953,979,1010,1067,1109,1292,
1360,1457,1507,1519,1699,1792,1841,1999,2111
GAC count: 21
TGT: 33,238,274,346,624,711,768,784,793,947,975,1026,1153,
1386,1462,1558,1851,1900,1926,2188
TGT count: 20
TGC: 966
TGC count: 1
CAA: 172,364,412,467,632,661,1051,1056,1093,1549,1832,1960,
1991
CAA count: 13
CAG: 310,400,571,1719,1824,1897,2055
CAG count: 7
GAA: 323,331,554,1468,2082
GAA count: 5
GAG: 455,840,944,1022
GAG count: 4
GGT: 780,1045,1165,1495,1648,2029,2095,2098,2106
GGT count: 9
GGC: (0)
GGA: 241,532,1589,1672,1747,1888,2116,2127
GGA count: 8
GGG: 731,850,1072,1123,1192,1204,1465
GGG count: 7
CAT: 202,658,751,1038,1119,1201,1297,1322,1448,1616,1669,
1738,1885,1942,2008,2035,2166
CAT count: 17
CAC: 37,42,61,64,67,91,263,547,655,896,907,1090,1105,1264,
1301,1350,1451,1687,1724,1735,1921,2169,2174
CAC count: 23
ATT: 136,518,1048,1081,1405
ATT count: 5
ATC: 434,502,584,927,1270,1607,1770,2150
ATC count: 8
ATA: 82,407,1034,1087,1635,1805
ATA count: 6
CTT: 156,166,298,460,700,892,988,1306,1392,1525,1845,1855,
2141,2184
CTT count: 14
CTC: 422,497,604,621,835,1217,1227,1243,1389,1692,1732,
1760,2002,2209
CTC count: 14
CTA: 169,249,397,473,652,680,708,831,1484,1580,1894,1970
CTA count: 12
CTG: 337,577,1796,1808,2155
CTG count: 5
TTA: 278,505,550,737,1041,1061,1595,1827,1914,1967,2076
TTA count: 11
TTG: 950,1143,1364,1374
TTG count: 4
AAA: 349,787,934,2191,2194
AAA count: 5
AAG: (0)
ATG: 114,320,1503,1532,1601
ATG count: 5
TTT: 403,1179,2180
TTT count: 3
TTC: 665,938,1135,1334,1433,1555,1610,1779,2021
TTC count: 9
CCT: 431,721,817
CCT count: 3
CCC: 179,759,1716,1956
CCC count: 4
CCA: 17,425,762,1395,1440,1487,1848,2038
CCA count: 8
CCG: (0)
TCT: 1150,1744,2048
TCT count: 3
TCC: 186,568,828,2144
TCC count: 4
TCA: 972,1570
TCA count: 2
TCG: (0)
AGT: 451,847,1084,1286,1753
AGT count: 5
AGC: (0)
ACT: 79,343
ACT count: 2
ACC: 125,159,266,1661
ACC count: 4
ACA: 899,1173,1623,1950
ACA count: 4
ACG: (0)
TGG: 683,1773
TGG count: 2
TAT: 368,1988,2005
TAT count: 3
TAC: 1211
TAC count: 1
GTT: 985,1198
GTT count: 2
GTC: (0)
GTA: 334
GTA count: 1
GTG: 255
GTG count: 1
TAA: (0)
TAG: 1371,2177
TAG count: 2
TGA: 610,2089
TGA count: 2
12) Codon Usage Bias:
About: Rubella virus complete genome (9762bp)
VERSION: AF188704.1
CODONS & LOCATIONS:
GCT: 9,22,123,167,337,350,366,446,463,543,547,577,604,731,
747,1051,1138,1153,1195,1269,1299,1303,1532,1539,1597,
1612,1638,1661,1702,1706,1735,1768,1793,1834,1894,
1901,1940,1980,1998,2002,2056,2080,2174,2188,2398,
2535,2569,2572,2580,2627,2691,2770,2773,2803,2852,
2865,2873,2896,2903,2965,2983,2998,3002,3074,3205,
3231,3313,3369,3378,3419,3478,3495,3499,3625,3738,
3814,3916,3970,4106,4130,4174,4249,4261,4425,4440,
4458,4470,4495,4613,4774,4785,4796,4804,4823,4969,
5068,5136,5174,5231,5323,5334,5346,5471,5597,5636,
5699,5716,5732,5770,5784,5808,5823,5854,5857,5888,
5916,6009,6018,6060,6127,6154,6206,6233,6269,6337,
6383,6515,6774,6874,6982,7071,7084,7118,7224,7237,
7279,7314,7341,7372,7378,7414,7504,7582,7597,7608,
7617,7803,7812,7853,7885,7923,7928,7989,8028,8067,
8089,8107,8125,8143,8264,8327,8337,8364,8367,8439,
8513,8548,8577,8646,8652,8690,8694,8982,8989,9019,
9049,9099,9134,9152,9226,9303,9325,9456,9548,9584,
9587,9590,9604,9638,9642,9650,9654,9666,9686,9699,
9754
GCT count: 196
GCC: 68,79,170,182,191,270,273,291,302,327,333,363,381,
407,413,419,428,483,527,596,625,632,641,677,705,710,
725,736,742,756,787,797,810,826,831,851,857,878,911,
936,948,995,1005,1023,1032,1074,1118,1125,1181,1211,
1235,1274,1277,1295,1322,1348,1355,1385,1394,1397,
1410,1431,1462,1465,1470,1481,1505,1518,1570,1574,
1578,1582,1606,1619,1626,1631,1641,1676,1688,1693,
1697,1713,1743,1751,1783,1802,1827,1831,1842,1851,
1859,1862,1918,1932,1952,1985,2011,2050,2069,2084,
2096,2099,2125,2162,2165,2178,2184,2195,2206,2224,
2227,2232,2264,2278,2287,2302,2305,2308,2312,2319,
2323,2329,2371,2393,2408,2424,2477,2483,2486,2530,
2555,2558,2576,2597,2606,2612,2621,2637,2643,2648,
2655,2685,2717,2725,2747,2750,2783,2807,2810,2838,
2891,2912,2917,2934,2946,2960,2975,3005,3034,3048,
3053,3060,3066,3091,3116,3124,3130,3141,3159,3188,
3224,3268,3281,3319,3334,3372,3391,3425,3428,3435,
3448,3506,3509,3512,3536,3545,3557,3564,3575,3582,
3587,3599,3620,3630,3648,3653,3659,3716,3752,3757,
3788,3831,3855,3882,3888,3903,3953,3974,4005,4008,
4022,4028,4037,4056,4068,4097,4133,4161,4193,4229,
4232,4265,4268,4331,4335,4383,4394,4404,4429,4446,
4478,4482,4535,4554,4557,4577,4599,4602,4643,4667,
4703,4727,4737,4748,4757,4856,4877,4903,4906,4910,
4928,4939,4942,4950,4980,4985,4989,5092,5117,5126,
5180,5184,5196,5205,5240,5312,5343,5363,5378,5385,
5399,5411,5432,5435,5442,5463,5468,5483,5487,5507,
5570,5577,5594,5601,5611,5654,5729,5742,5753,5777,
5845,5849,5876,5921,5999,6086,6090,6132,6135,6173,
6186,6211,6224,6227,6309,6323,6368,6393,6408,6456,
6483,6496,6506,6554,6575,6593,6596,6602,6610,6615,
6619,6625,6628,6669,6685,6690,6693,6696,6711,6717,
6740,6745,6788,6796,6808,6811,6820,6860,6867,6880,
6883,6905,6918,6924,6928,6965,7068,7105,7111,7114,
7148,7193,7233,7246,7257,7274,7323,7349,7358,7367,
7382,7391,7409,7420,7450,7453,7459,7507,7527,7554,
7571,7585,7590,7702,7705,7720,7751,7754,7763,7771,
7775,7782,7787,7791,7831,7839,7845,7898,7909,7941,
7973,7977,7998,8008,8012,8031,8046,8075,8081,8093,
8132,8175,8178,8183,8190,8193,8201,8204,8207,8210,
8249,8297,8322,8372,8390,8399,8447,8462,8522,8552,
8621,8642,8684,8771,8818,8848,8913,8922,8937,8948,
8961,8967,8999,9004,9024,9035,9059,9067,9088,9147,
9166,9182,9216,9246,9259,9274,9336,9341,9360,9392,
9419,9422,9442,9503,9617,9626,9659,9694,9707,9730
GCC count: 460
GCA: 99,217,223,242,251,374,395,399,442,473,514,565,585,
672,682,762,771,892,921,945,1047,1062,1131,1146,1156,
1173,1202,1225,1362,1447,1502,1511,1870,1882,1993,
2015,2023,2063,2076,2105,2135,2147,2237,2248,2254,
2271,2444,2497,2538,2630,2790,2793,2938,2971,3041,
3081,3163,3243,3274,3286,3345,3382,3387,3394,3405,
3438,3462,3523,3603,3672,3745,3843,3945,4043,4062,
4100,4110,4122,4180,4278,4407,4521,4527,4539,4617,
4625,4662,4671,4683,4692,4829,4860,4885,4889,4917,
4956,5052,5169,5188,5253,5299,5367,5501,5536,5581,
5632,5781,5790,5832,5860,5883,5895,5973,5981,6037,
6045,6070,6078,6109,6116,6166,6459,6563,6607,6648,
6702,6723,6763,6834,6838,6902,6953,7027,7044,7185,
7198,7218,7228,7242,7302,7335,7398,7439,7456,7471,
7477,7480,7519,7539,7558,7636,7644,7666,7690,8219,
8230,8280,8285,8403,8475,8487,8502,8545,8574,8587,
8704,8758,8811,8821,8892,9054,9111,9205,9282,9508,
9534,9565,9601,9724,9745
GCA count: 180
GCG: 138,151,178,259,342,354,432,437,459,466,480,519,533,
573,611,638,651,699,822,841,888,899,903,907,916,960,
964,1012,1082,1092,1096,1142,1218,1244,1260,1290,1330,
1344,1388,1407,1425,1484,1524,1542,1552,1644,1668,
1672,1685,1718,1788,1799,1815,1866,1878,1886,1958,
1964,1977,2007,2043,2116,2138,2153,2170,2192,2214,
2242,2268,2293,2337,2366,2375,2382,2386,2421,2457,
2511,2586,2592,2618,2664,2669,2675,2694,2728,2731,
2763,2779,2813,2825,2834,2856,2876,2900,2908,2926,
2991,3010,3084,3098,3135,3150,3169,3211,3219,3236,
3323,3340,3351,3375,3400,3444,3466,3471,3474,3530,
3540,3594,3634,3642,3724,3807,3823,3827,3867,3876,
3879,3891,3920,3939,3956,3980,4034,4141,4203,4207,
4243,4295,4308,4311,4320,4346,4359,4380,4475,4486,
4490,4515,4585,4636,4656,4709,4719,4792,4799,4809,
4835,4869,5003,5016,5028,5041,5059,5106,5131,5142,
5148,5221,5266,5307,5315,5339,5391,5424,5544,5566,
5624,5766,5797,5826,5838,5841,5910,5937,5967,5978,
6066,6083,6203,6236,6252,6259,6277,6290,6296,6304,
6333,6362,6580,6584,6622,6631,6637,6699,6760,6802,
6847,6911,6969,6990,6996,7002,7017,7101,7131,7152,
7164,7179,7209,7215,7252,7266,7319,7385,7403,7425,
7436,7536,7546,7575,7605,7629,7709,7733,7736,7806,
7809,7827,7866,7881,7933,8001,8004,8058,8099,8129,
8196,8256,8331,8361,8409,8433,8469,8494,8498,8535,
8571,8603,8607,8634,8639,8676,8775,8784,8986,9010,
9072,9107,9117,9195,9264,9289,9312,9378,9459,9465,
9471,9477,9483,9487,9522,9575,9679,9713
GCG count: 285
CGT: 94,118,141,187,310,454,493,508,607,646,719,940,1036,
1099,1176,1207,1221,1444,1495,1527,1546,1559,1732,
1764,1910,1915,2047,2199,2433,2464,2797,2816,2920,
2929,2980,2986,3013,3087,3172,3193,3517,3706,3727,
3785,3801,3862,4156,4323,4327,4414,4594,4633,4699,
4732,4812,4899,4936,4972,5224,5259,5710,5872,6073,
6151,6220,6262,6274,6398,6402,6447,6894,6914,7123,
7126,7134,7156,7466,7549,7579,7963,8151,8224,8317,
8353,8430,8668,8698,8719,8752,8767,8781,8805,9141,
9157,9267,9370,9385,9412,9513
CGT count: 99
CGC: 524,1192,1567,2284,2326,2480,2722,2800,2957,3121,3185,
3503,3533,4246,4622,5193,5774,5970,6365,6572,6831,
6864,7221,7406,8104,8122,8472,8542,9131,9322
CGC count: 30
CGA: 133,154,283,319,358,477,502,664,688,844,971,1078,1263,
1402,1417,1555,1591,1657,1780,1927,2038,2143,2296,
2413,2418,2504,2563,2755,2776,2888,2923,2953,3027,
3031,3127,3208,3214,3250,3552,3645,3688,3742,3760,
3817,3835,3961,3964,3988,3991,3997,4144,4183,4210,
4216,4240,4254,4274,4288,4435,4465,4498,4510,4564,
4588,4609,4639,4753,4771,4777,4819,4882,4924,5033,
5086,5160,5278,5329,5455,5547,5614,5620,5659,5665,
5680,5713,5719,5800,5941,5962,6142,6181,6280,6313,
6340,6379,6509,6559,6640,6792,6949,6961,7021,7057,
7060,7261,7297,7522,7565,7693,7697,7716,7981,8035,
8061,8386,8662,8833,8851,8925,8941,9031,9040,9160,
9169,9480,9716
CGA count: 126
CGG: 14,73,330,805,818,978,1339,1721,1759,1838,1889,1945,
2112,2128,2259,2340,2349,2451,2738,2819,2848,2994,
3063,3265,3455,3676,3870,3897,3935,4012,4031,4363,
4370,4695,4745,5095,5100,5145,5273,5318,5498,5607,
5705,6191,6255,6299,6489,6655,6679,6707,6753,6844,
7005,7345,7474,7486,7516,7849,7862,7871,7916,8289,
8626,8723,8824,8906,8917,8955,9213,9249,9298,9388,
9555,9682
CGG count: 74
AGA: 45,110,203,298,423,539,1065,1113,1159,1186,1189,1476,
1955,3481,3679,3702,3748,4113,4147,4224,4933,4963,
5076,5208,5355,5382,5428,5493,5553,5556,5691,5758,
5817,6148,6160,6345,6351,6493,6549,6658,6757,6766,
7308,7984,8349,8412,8715,8740,9007,9237,9468,9558,
9737
AGA count: 53
AGG: 26,60,345,389,873,1170,1238,1368,1380,2091,2403,2541,
2760,3144,3327,3612,4082,4350,4560,4647,4845,4848,
5025,5151,5244,5447,5475,5511,5523,5934,6003,6123,
6433,6501,6540,6682,6726,6737,6769,6993,7160,7641,
8020,8259,8436,8610,8747,8841,9075,9346,9352,9381
AGG count: 52
AAT: 2,127,1458,2150,3179,3794,4076,4169,4397,6230,6371,
6414,6567,7796,8483,8882,9163,9374,9663
AAT count: 19
AAC: 48,86,91,402,861,882,954,1232,1377,1848,2088,2437,
2552,2609,3153,3197,3299,3416,3488,4053,4091,4197,
4257,4339,4400,4591,4839,5012,5072,5103,5651,5687,
5864,6052,6390,6429,6588,6781,6816,6825,6841,6890,
7037,7094,7139,7143,7568,7622,7739,7956,8240,8305,
8519,8564,8616,8799,8829,8898,8964,9356,9431,9719
AAC count: 62
GAT: 56,196,220,233,280,568,580,713,1249,1492,1586,1652,
1679,2059,2378,3113,3138,3656,3697,3711,4016,4186,
4354,4367,5089,5288,5302,5722,5926,6101,6944,7202,
7430,7834,7876,8423,8671,9175
GAT count: 38
GAC: 113,449,536,593,617,656,695,791,838,1280,1307,1319,
1421,1439,1514,1796,2120,2345,2390,2447,2490,2522,
2633,2741,2968,3069,3182,3359,3668,4019,4373,4421,
4505,4550,4688,4714,4741,4781,4865,4913,5006,5020,
5450,5459,5992,6215,6245,6386,6662,6674,6886,6938,
6973,7064,7076,7673,7799,7856,7993,8055,8117,8357,
8381,8743,8861,8978,9120,9138,9253,9295,9497,9568
GAC count: 72
TGT: 130,157,160,208,378,621,716,834,985,1150,1875,1906,
2290,2494,2545,2589,2830,3201,3259,3310,3348,3363,
3432,3719,3774,3930,3950,4678,4873,5370,5529,5590,
5880,6012,6040,6450,7089,7651,7655,7682,7818,8137,
8172,8186,8311,8679,8778,8788,8930,8992,9078,9091,
9286,9292,9528,9552,9669,9750
TGT count: 58
TGC: 848,1199,2073,3240,3520,3572,4002,5049,5123,5574,5750,
5892,5913,7081,7768,7842,8294,9623
TGC count: 18
CAA: 173,324,779,1105,1455,2440,3316,3568,5407,5835,5905,
5986,7601,7663,8584,8728,9449
CAA count: 17
CAG: 229,896,1043,1898,3016,3077,3307,3331,3441,3977,4047,
4190,4376,5113,6030,6113,6899,7270,7355,7901,9104,
9240,9308
CAG count: 23
GAA: 6,146,998,1255,2468,5036,5270,5419,5479,6034,9229,
9332,9406
GAA count: 13
GAG: 1358,1622,2879,3355,4292,5675,8342,8870,9578
GAG count: 9
GGT: 106,226,370,628,967,1008,1017,1164,1807,2132,2548,
2697,2868,3056,3147,3253,3256,3397,3526,3561,3733,
3797,3820,5157,5236,5518,5617,5628,5662,5899,5947,
6169,6196,6465,6469,6732,6854,7172,7613,7824,7960,
8041,8146,8155,8235,8452,8538,8836,8866,9028,9082,
9328,9490,9597
GGT count: 54
GGC: 470,728,1428,1594,1949,1990,2640,3366,4103,4455,5250,
6599,6805,7332,9614
GGC count: 15
GGA: 505,661,722,1167,3271,3639,4966,6987,7687,8396
GGA count: 10
GGG: 288,870,1374,2566,3110,3804,3838,3967,4826,6405,6851,
6877,7938,7953,8443,8649,8858,8910,8995,9223,9349,
9462
GGG count: 22
CAT: 40,316,562,589,692,867,989,1312,1600,2020,2031,2461,
2515,2518,2652,2707,2710,2941,3608,4219,4285,4997,
5563,5639,5683,5950,6025,6098,6106,6328,6437,6529,
6535,6935,6978,7499,7669,7744,8015,8050,8376,8735,
8875,8933,9094,9127,9493,9593
CAT count: 48
CAC: 214,236,248,386,497,556,739,751,766,800,1135,1499,
1710,1729,1754,1771,1821,1923,2035,2158,2202,2359,
2526,2659,2679,2701,2714,3166,3175,3294,3302,3422,
3764,3782,3850,3885,3908,4117,4138,4165,4300,4342,
4386,4443,4450,4571,4630,4788,4893,4896,5063,5081,
5214,5227,5284,5296,5326,5644,5647,5671,5812,5869,
6317,6419,6440,6444,6476,6520,6532,6958,7033,7053,
7289,7294,7490,7493,7496,7532,7562,7658,7726,7729,
7891,7894,8215,8269,8419,8458,8490,8594,8599,8630,
8659,8665,8711,8791,8794,8815,8887,9085,9179,9185,
9210,9367,9415,9537,9541,9544,9607,9633,9733
CAC count: 111
ATT: 254,276,1325,1521,5584,5787,6486,8970,9620
ATT count: 9
ATC: 35,932,2245,2600,4079,5349,6119,6799,7326,8895,9363,
9474
ATC count: 12
ATA: 264,5046,5604,9689,9759
ATA count: 5
CTT: 65,487,601,635,1284,1336,1435,1563,1775,1810,1855,
1972,2885,3045,3107,3616,3859,4071,4531,4544,4568,
4945,4975,5199,5263,5359,5416,5668,5737,5953,6094,
6284,6480,6545,7009,7098,7329,7375,7543,7967,8064,
8114,8466,8506,8556,8560,8687,9220,9676
CTT count: 49
CTC: 19,30,245,926,974,992,1352,1634,1664,2027,2108,2274,
2355,2501,2624,2843,3021,3024,3038,3278,3412,3767,
3779,3911,4040,4059,4127,4151,4304,4574,4582,4724,
4760,4766,4959,5009,5056,5165,5438,5696,5793,5957,
6176,6266,6374,6425,6643,6652,6932,7364,7647,8084,
8276,8301,8527,8530,8762,9425,9428,9629,9647
CTC count: 61
CTA: 294,305,490,550,553,775,814,1057,1087,1738,2860,3262,
3985,4237,4282,4390,5293,5761,6199,6241,6358,6422,
7012,7189,7446,8272,8581,9189,9445,9673,9727
CTA count: 31
CTG: 53,416,668,1070,1121,1473,1489,1845,1936,2066,3590,
3770,4706,4832,5352,5804,6870,7040,7594,7625,7633,
7678,7821,8159,8479,8509,8568,8755,9063,9202,9402,
9571,9611
CTG count: 33
TTA: 82,2473,4501,5526,5559,7483,9516
TTA count: 7
TTG: 103,1241,1315,1824,2102,5490,7168,7305,7395,7920,8613,
8944
TTG count: 12
AAA: 7175
AAA count: 1
AAG: 1967,2766,4065,6999
AAG count: 4
ATG: 3730,4025,4087,4094,4652,5154,6512,7433,8168,8253,
8879,9531
ATG count: 12
TTT: 2603,3289,5539,5929,6139,6411,7030,8732,8958,9740
TTT count: 10
TTC: 1040,1109,1214,1616,3246,4605,4851,5109,5402,6348,
6453,7205,7361,7511,9233,9243,9395
TTC count: 17
CCT: 313,759,784,929,982,1414,2735,3452,3492,3665,3685,
3694,3994,4177,4418,4816,5281,5587,5747,6941,7024,
7779,7950,8140,8227,8708,8855,8975,9046,9256
CCT count: 30
CCC: 200,267,511,1027,1451,1535,1549,1603,1726,1747,2210,
2218,2221,2281,2299,2315,2333,2363,2427,2744,2950,
3094,3102,3337,3408,3484,3682,3691,3791,3847,3925,
4410,4462,4921,4953,4993,5217,5395,5532,5902,5995,
6048,6055,6145,6354,6473,6525,6748,6777,6828,7047,
7050,7283,7286,7311,7352,7442,7462,7713,7758,7906,
7945,8025,8070,8243,8246,8314,8416,8656,8845,8952,
9014,9043,9199,9278,9318,9398,9435,9438,9500,9561,
9710
CCC count: 82
CCA: 239,957,2430,2704,3228,4675,6022,7417,8346,8701,9124,
9192
CCA count: 12
CCG: 2181,2583,2682,4524,5820,6320,6666,6785,9519
CCG count: 9
TCT: 685,864,1229,3156,3894,6063,6462,6857,7723,7815,8111,
8406,8427,8808
TCT count: 14
TCC: 951,2352,2508,2882,3662,4050,4200,5202,5211,5550,6921,
7338,8334,8903
TCC count: 14
TCA: 1020,4842,9453
TCA count: 3
TCG: 3873,4659,6015,7212,8078
TCG count: 5
AGT: 1371,1647,3811,4314,5247,5514,7249,9114,9702
AGT count: 9
AGC: 1266,1508,4518,5726,5829,6720,7182,9271
AGC count: 8
ACT: 885,4317,5702,6729,8038,8393
ACT count: 6
ACC: 164,410,559,794,1818,2787,3900,5139,5375,6287,7748,
7859,7913,7970,8308,8455,8802
ACC count: 17
ACA: 1128,2053,2454,3549,6163,6249,6634,8096
ACA count: 8
ACG: 392,1682,2251,2615,2688,3579,9144
ACG count: 7
TGG: 76,1002,1365,1961,2822,4547,5504,6006,9525,9581
TGG count: 10
TAT: 1252,4213,5944
TAT count: 3
TAC: 4271,4432,4763,5000,6293,8591
TAC count: 6
GTT: 211,614,702,1102,1333,5120,9409
GTT count: 7
GTC: 1054,1391,7388,7888,8516
GTC count: 5
GTA: 9315
GTA count: 1
GTG: 530,854,1609,2672,3458,3942,5177,5989,6714,6908,9172
GTG count: 11
TAA: (0)
TAG: (0)
TGA: 1287,5256,5388,6157,7108
TGA count: 5
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