Dredd Blog: 2020-06-21

Thursday, June 25, 2020

On The Origin Of The Home Of COVID-19 - 7

I. Background

Regular readers are aware that I have been expecting the news we see in newspapers and on TV for about six years (What Did The Mass Extinctions Do To Viruses and Microbes?, The Real Dangers With Microbes & Viruses).

So, this will be the last Sars-Cov-2 (COVID-19) post in this series for awhile (On The Origin Of The Home Of COVID-19, 2, 3, 4, 5, 6).

The current spike in the first wave has been caused by the denial of the GOP, just as the first spike was (different geographical states, same state of mind).

I want to point out the results of checking out the nucleobases/nucleic acid sequences of bats as I indicated in the previous post of this series.

It is interesting mostly because of what was not found rather than what was found as in the analysis of cattle.

To sum it up, only about 6% of bat genomes had significant segments of coronavirus in them (94% had no segments or 1-2 segments).

This is a stark result, because much of the historical scientific papers indicated that bats were the prime suspect.

It further supports the hypothesis that our food mass production methods, practices, and techniques generate pathogenic viruses and pathogenic single celled microbes, in the sense that bats are not part of that industry.

The research into viruses is embryonic but moving fast:

"Virologist Jemma Geoghegan at the University of Otago, New Zealand, says that before researchers can use viral traits to predict the next spillover event, many more viruses need to be sampled and characterized to reveal the true diversity of viruses in nature. Until then, she thinks surveillance efforts are better directed towards genomic surveillance at the ‘fault lines’ where people and animals interact, such as live animal markets [and industries where animals are being mass produced and drugged]. 'That way, we can quickly recognize any viruses that spill over,' she says."

(Bats are a key source of human viruses — but they’re not special).

II. The Search

The results of the search of bat genomes/nucleic acid sequences can be seen below:
Covid Bases ID:MT641485.1
(sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: bats Bat File Type: nucleic acid sequences/base_pairs_bats

Search Results:
Bats File Section Id	Bats Virus Type	Covid-19 Segments Found
NC_048212.1	CO-AN-CC-DN	211
NC_034440.1	CO-AN-CG-DN	213
MH985640.1	CO-AN-CU-DN	0
MH985641.1	CO-AN-CU-DN	0
MH985642.1	CO-AN-CU-DN	0
MH985643.1	CO-AN-CU-DN	0
MH985644.1	CO-AN-CU-DN	0
MH985645.1	CO-AN-CU-DN	0
MH985646.1	CO-AN-CU-DN	0
MH985647.1	CO-AN-CU-DN	0
MH985648.1	CO-AN-CU-DN	0
MH985649.1	CO-AN-CU-DN	0
MH985650.1	CO-AN-CU-DN	0
MH985651.1	CO-AN-CU-DN	0
MH985652.1	CO-AN-CU-DN	0
MH985653.1	CO-AN-CU-DN	0
MH985654.1	CO-AN-CU-DN	0
MH985655.1	CO-AN-CU-DN	0
MH985656.1	CO-AN-CU-DN	0
MH985657.1	CO-AN-CU-DN	0
MH985658.1	CO-AN-CU-DN	0
MH985659.1	CO-AN-CU-DN	0
MH985660.1	CO-AN-CU-DN	0
MH985661.1	CO-AN-CU-DN	0
MH985662.1	CO-AN-CU-DN	0
MH985663.1	CO-AN-CU-DN	0
MH985664.1	CO-AN-CU-DN	0
MH985665.1	CO-AN-CU-DN	0
MH985666.1	CO-AN-CU-DN	0
MH985667.1	CO-AN-CU-DN	0
MH985668.1	CO-AN-CU-DN	0
MH985669.1	CO-AN-CU-DN	0
MH985670.1	CO-AN-CU-DN	0
MH985671.1	CO-AN-CU-DN	0
MH985672.1	CO-AN-CU-DN	0
MH985673.1	CO-AN-CU-DN	0
MH985674.1	CO-AN-CU-DN	0
MH985675.1	CO-AN-CU-DN	0
MH985676.1	CO-AN-CU-DN	0
MH985677.1	CO-AN-CU-DN	0
MH985678.1	CO-AN-CU-DN	0
MH985679.1	CO-AN-CU-DN	0
MH985680.1	CO-AN-CU-DN	0
MH985681.1	CO-AN-CU-DN	0
MH985682.1	CO-AN-CU-DN	0
MH985683.1	CO-AN-CU-DN	0
MH985684.1	CO-AN-CU-DN	0
MH985685.1	CO-AN-CU-DN	0
MH985686.1	CO-AN-CU-DN	0
MH985687.1	CO-AN-CU-DN	0
MH985688.1	CO-AN-CU-DN	0
MH985689.1	CO-AN-CU-DN	0
MH985690.1	CO-AN-CU-DN	0
MH985691.1	CO-AN-CU-DN	0
MH985692.1	CO-AN-CU-DN	0
MH985693.1	CO-AN-CU-DN	0
MH985694.1	CO-AN-CU-DN	0
MH985695.1	CO-AN-CU-DN	0
MH985696.1	CO-AN-CU-DN	0
MH985697.1	CO-AN-CU-DN	0
MH985698.1	CO-AN-CU-DN	0
MT350592.1	CO-AN-CU-DN	0
MT350593.1	CO-AN-CU-DN	0
MN183146.1	CO-AN-CU-DN	0
MN183147.1	CO-AN-CU-DN	0
MN183148.1	CO-AN-CU-DN	0
MN183149.1	CO-AN-CU-DN	0
MN183150.1	CO-AN-CU-DN	0
MN183151.1	CO-AN-CU-DN	0
MN183152.1	CO-AN-CU-DN	0
MN183153.1	CO-AN-CU-DN	0
MN183154.1	CO-AN-CU-DN	0
MN183155.1	CO-AN-CU-DN	0
MN183156.1	CO-AN-CU-DN	0
MN183157.1	CO-AN-CU-DN	0
MN183158.1	CO-AN-CU-DN	0
MN183159.1	CO-AN-CU-DN	0
MN183160.1	CO-AN-CU-DN	0
MN183161.1	CO-AN-CU-DN	0
MN183162.1	CO-AN-CU-DN	0
MN183163.1	CO-AN-CU-DN	0
MN183164.1	CO-AN-CU-DN	0
MN183165.1	CO-AN-CU-DN	0
MN183166.1	CO-AN-CU-DN	0
MN183167.1	CO-AN-CU-DN	0
MN183168.1	CO-AN-CU-DN	0
MN183169.1	CO-AN-CU-DN	0
MN183170.1	CO-AN-CU-DN	0
MN183171.1	CO-AN-CU-DN	0
MN183172.1	CO-AN-CU-DN	0
MN183173.1	CO-AN-CU-DN	0
MN183174.1	CO-AN-CU-DN	0
MN183175.1	CO-AN-CU-DN	0
MN183176.1	CO-AN-CU-DN	0
MN183177.1	CO-AN-CU-DN	0
MN183178.1	CO-AN-CU-DN	0
MN183179.1	CO-AN-CU-DN	0
MN183180.1	CO-AN-CU-DN	0
MN183181.1	CO-AN-CU-DN	0
MN183182.1	CO-AN-CU-DN	0
MN183183.1	CO-AN-CU-DN	0
MN183184.1	CO-AN-CU-DN	0
MN183185.1	CO-AN-CU-DN	0
MN183186.1	CO-AN-CU-DN	0
MN183187.1	CO-AN-CU-DN	0
MN183188.1	CO-AN-CU-DN	0
MN183189.1	CO-AN-CU-DN	0
MN183190.1	CO-AN-CU-DN	0
MN183191.1	CO-AN-CU-DN	0
MN183192.1	CO-AN-CU-DN	0
MN183193.1	CO-AN-CU-DN	0
MN183194.1	CO-AN-CU-DN	0
MN183195.1	CO-AN-CU-DN	0
MN183196.1	CO-AN-CU-DN	0
MN183197.1	CO-AN-CU-DN	0
MN183198.1	CO-AN-CU-DN	0
MN183199.1	CO-AN-CU-DN	0
MN183200.1	CO-AN-CU-DN	0
MN183201.1	CO-AN-CU-DN	0
MN183202.1	CO-AN-CU-DN	0
MN183203.1	CO-AN-CU-DN	0
MN183204.1	CO-AN-CU-DN	0
MN183205.1	CO-AN-CU-DN	0
MN183206.1	CO-AN-CU-DN	0
MN183207.1	CO-AN-CU-DN	0
MN183208.1	CO-AN-CU-DN	0
MN183209.1	CO-AN-CU-DN	0
MN183210.1	CO-AN-CU-DN	0
MN183211.1	CO-AN-CU-DN	0
MN183212.1	CO-AN-CU-DN	0
MN183213.1	CO-AN-CU-DN	0
MN183214.1	CO-AN-CU-DN	0
MN183215.1	CO-AN-CU-DN	0
MN183216.1	CO-AN-CU-DN	0
MN183217.1	CO-AN-CU-DN	0
MN183218.1	CO-AN-CU-DN	0
MN183219.1	CO-AN-CU-DN	0
MN183220.1	CO-AN-CU-DN	0
MN183221.1	CO-AN-CU-DN	0
MN183222.1	CO-AN-CU-DN	0
MN183223.1	CO-AN-CU-DN	0
MN183224.1	CO-AN-CU-DN	0
MN183225.1	CO-AN-CU-DN	0
MN183226.1	CO-AN-CU-DN	0
MN183227.1	CO-AN-CU-DN	0
MN183228.1	CO-AN-CU-DN	0
MN183229.1	CO-AN-CU-DN	0
MN183230.1	CO-AN-CU-DN	0
MN183231.1	CO-AN-CU-DN	0
MN183232.1	CO-AN-CU-DN	0
MN183233.1	CO-AN-CU-DN	0
MN183234.1	CO-AN-CU-DN	0
MN183235.1	CO-AN-CU-DN	0
MN183236.1	CO-AN-CU-DN	0
MN183237.1	CO-AN-CU-DN	0
MN183238.1	CO-AN-CU-DN	0
MN183239.1	CO-AN-CU-DN	0
MN183240.1	CO-AN-CU-DN	0
MN183241.1	CO-AN-CU-DN	0
MN183242.1	CO-AN-CU-DN	0
MN183243.1	CO-AN-CU-DN	0
MN183244.1	CO-AN-CU-DN	0
MN183245.1	CO-AN-CU-DN	0
MN183246.1	CO-AN-CU-DN	0
MN183247.1	CO-AN-CU-DN	0
MN183248.1	CO-AN-CU-DN	0
MN183249.1	CO-AN-CU-DN	0
MN183250.1	CO-AN-CU-DN	0
MN183251.1	CO-AN-CU-DN	0
MN183252.1	CO-AN-CU-DN	0
MN183253.1	CO-AN-CU-DN	0
MN183254.1	CO-AN-CU-DN	0
MN183255.1	CO-AN-CU-DN	0
MN183256.1	CO-AN-CU-DN	0
MN183257.1	CO-AN-CU-DN	0
MN183258.1	CO-AN-CU-DN	0
MN183259.1	CO-AN-CU-DN	0
MN183260.1	CO-AN-CU-DN	0
MN183261.1	CO-AN-CU-DN	0
MN183262.1	CO-AN-CU-DN	0
MN183263.1	CO-AN-CU-DN	0
MN183264.1	CO-AN-CU-DN	0
MN183265.1	CO-AN-CU-DN	0
MN183266.1	CO-AN-CU-DN	0
MN183267.1	CO-AN-CU-DN	0
MN183268.1	CO-AN-CU-DN	0
MN183269.1	CO-AN-CU-DN	0
MN183270.1	CO-AN-CU-DN	0
MN183271.1	CO-AN-CU-DN	0
MN183272.1	CO-AN-CU-DN	0
MN183273.1	CO-AN-CU-DN	0
MK991901.1	CO-AN-CU-DN	0
MK991902.1	CO-AN-CU-DN	0
MK991903.1	CO-AN-CU-DN	0
MK991904.1	CO-AN-CU-DN	0
MK991905.1	CO-AN-CU-DN	0
MK991906.1	CO-AN-CU-DN	0
MK991907.1	CO-AN-CU-DN	0
MK991908.1	CO-AN-CU-DN	0
MK991909.1	CO-AN-CU-DN	0
MK991910.1	CO-AN-CU-DN	0
MK991911.1	CO-AN-CU-DN	0
MK991912.1	CO-AN-CU-DN	0
MK991913.1	CO-AN-CU-DN	0
MK991914.1	CO-AN-CU-DN	0
MK991915.1	CO-AN-CU-DN	0
MK991916.1	CO-AN-CU-DN	0
MK991917.1	CO-AN-CU-DN	0
MK991918.1	CO-AN-CU-DN	0
MK991919.1	CO-AN-CU-DN	0
MK991920.1	CO-AN-CU-DN	0
MK991921.1	CO-AN-CU-DN	0
MK991922.1	CO-AN-CU-DN	0
MK991923.1	CO-AN-CU-DN	0
MK991924.1	CO-AN-CU-DN	0
MK991925.1	CO-AN-CU-DN	0
MK991926.1	CO-AN-CU-DN	0
MK991927.1	CO-AN-CU-DN	0
MK991928.1	CO-AN-CU-DN	0
MK991929.1	CO-AN-CU-DN	0
MK991930.1	CO-AN-CU-DN	0
MK991931.1	CO-AN-CU-DN	0
MK991932.1	CO-AN-CU-DN	0
MK991933.1	CO-AN-CU-DN	0
MK991934.1	CO-AN-CU-DN	1
MK991935.1	CO-AN-CU-DN	1
MK991936.1	CO-AN-CU-DN	1
MK991937.1	CO-AN-CU-DN	0
MK991938.1	CO-AN-CU-DN	0
MK991939.1	CO-AN-CU-DN	0
MK991940.1	CO-AN-CU-DN	0
MK991941.1	CO-AN-CU-DN	0
MK991942.1	CO-AN-CU-DN	0
MK991943.1	CO-AN-CU-DN	0
MK991944.1	CO-AN-CU-DN	0
MK991945.1	CO-AN-CU-DN	0
MK991946.1	CO-AN-CU-DN	0
MK991947.1	CO-AN-CU-DN	0
MK991948.1	CO-AN-CU-DN	0
MK991949.1	CO-AN-CU-DN	0
MK991950.1	CO-AN-CU-DN	0
MK991951.1	CO-AN-CU-DN	0
MH974764.1	CO-AN-CU-DN	0
MH974765.1	CO-AN-CU-DN	0
MH974766.1	CO-AN-CU-DN	0
MH974767.1	CO-AN-CU-DN	0
MH974768.1	CO-AN-CU-DN	0
MH974769.1	CO-AN-CU-DN	0
MH974770.1	CO-AN-CU-DN	0
MH974771.1	CO-AN-CU-DN	0
MH974772.1	CO-AN-CU-DN	0
MH974773.1	CO-AN-CU-DN	0
MH974774.1	CO-AN-CU-DN	0
MH974775.1	CO-AN-CU-DN	0
MH974776.1	CO-AN-CU-DN	0
MH974777.1	CO-AN-CU-DN	0
MH974778.1	CO-AN-CU-DN	0
MH974779.1	CO-AN-CU-DN	0
MH974780.1	CO-AN-CU-DN	0
LC469028.1	CO-AN-CU-DN	0
LC469029.1	CO-AN-CU-DN	0
LC469030.1	CO-AN-CU-DN	0
LC469031.1	CO-AN-CU-DN	0
LC469032.1	CO-AN-CU-DN	0
LC469033.1	CO-AN-CU-DN	0
LC469034.1	CO-AN-CU-DN	0
LC469035.1	CO-AN-CU-DN	0
LC469036.1	CO-AN-CU-DN	0
LC469037.1	CO-AN-CU-DN	0
LC469038.1	CO-AN-CU-DN	0
LC469039.1	CO-AN-CU-DN	0
LC469040.1	CO-AN-CU-DN	0
LC469041.1	CO-AN-CU-DN	0
LC469042.1	CO-AN-CU-DN	0
LC469043.1	CO-AN-CU-DN	0
LC469044.1	CO-AN-CU-DN	0
LC469045.1	CO-AN-CU-DN	0
LC469046.1	CO-AN-CU-DN	0
LC469047.1	CO-AN-CU-DN	0
LC469301.1	CO-AN-CU-DN	0
LC469302.1	CO-AN-CU-DN	0
LC469303.1	CO-AN-CU-DN	0
LC469304.1	CO-AN-CU-DN	0
LC469305.1	CO-AN-CU-DN	0
LC469306.1	CO-AN-CU-DN	0
LC469307.1	CO-AN-CU-DN	0
LC469308.1	CO-AN-CG-DN	193
MK492263.1	CO-AN-CG-DN	233
MH396476.1	CO-AN-CU-DN	0
MH396477.1	CO-AN-CU-DN	0
MH396478.1	CO-AN-CU-DN	0
MH396479.1	CO-AN-CU-DN	0
MK004985.1	CO-AN-CU-DN	0
MK004986.1	CO-AN-CU-DN	0
MK004987.1	CO-AN-CU-DN	0
MK004988.1	CO-AN-CU-DN	0
MK004989.1	CO-AN-CU-DN	0
MK004990.1	CO-AN-CU-DN	0
MK004991.1	CO-AN-CU-DN	0
MK004992.1	CO-AN-CU-DN	0
MK004993.1	CO-AN-CU-DN	0
MG916901.1	CO-AN-CG-DN	202
MG916902.1	CO-AN-CG-DN	207
MG916903.1	CO-AN-CG-DN	199
MG916904.1	CO-AN-CG-DN	232
MG963186.1	CO-AN-CU-DN	0
MG963187.1	CO-AN-CU-DN	0
MG963188.1	CO-AN-CU-DN	0
MG963189.1	CO-AN-CU-DN	0
MG963190.1	CO-AN-CU-DN	0
MG963191.1	CO-AN-CU-DN	0
MG963192.1	CO-AN-CU-DN	0
MG963193.1	CO-AN-CU-DN	0
MG963194.1	CO-AN-CU-DN	0
MG963195.1	CO-AN-CU-DN	0
MG963196.1	CO-AN-CU-DN	0
MG963197.1	CO-AN-CU-DN	0
MG963198.1	CO-AN-CU-DN	0
MG963199.1	CO-AN-CU-DN	0
MG963200.1	CO-AN-CU-DN	0
MG963201.1	CO-AN-CU-DN	0
MH921428.1	CO-AN-CU-DN	0
MH921429.1	CO-AN-CU-DN	0
LR025670.1	CO-AN-CU-DN	0
LR025671.1	CO-AN-CU-DN	0
LR025672.1	CO-AN-CU-DN	0
LR025673.1	CO-AN-CU-DN	0
LR025674.1	CO-AN-CU-DN	0
LR025675.1	CO-AN-CU-DN	0
LR025676.1	CO-AN-CU-DN	0
LR025677.1	CO-AN-CU-DN	0
LR025678.1	CO-AN-CU-DN	0
LR025679.1	CO-AN-CU-DN	0
LR025680.1	CO-AN-CU-DN	0
LR025681.1	CO-AN-CU-DN	0
LR025682.1	CO-AN-CU-DN	0
LR025683.1	CO-AN-CU-DN	0
LR025684.1	CO-AN-CU-DN	0
LR025685.1	CO-AN-CU-DN	0
LR025686.1	CO-AN-CU-DN	0
LR025687.1	CO-AN-CU-DN	0
LR025688.1	CO-AN-CU-DN	0
LR025689.1	CO-AN-CU-DN	0
LR025690.1	CO-AN-CU-DN	0
LR025691.1	CO-AN-CU-DN	0
LR025692.1	CO-AN-CU-DN	0
LR025693.1	CO-AN-CU-DN	0
LR025694.1	CO-AN-CU-DN	0
LR025695.1	CO-AN-CU-DN	0
LR025696.1	CO-AN-CU-DN	0
LR025698.1	CO-AN-CU-DN	0
LR025699.1	CO-AN-CU-DN	0
LR025700.1	CO-AN-CU-DN	0
LR025701.1	CO-AN-CU-DN	0
LR025702.1	CO-AN-CU-DN	0
LR025703.1	CO-AN-CU-DN	0
LR025704.1	CO-AN-CU-DN	0
LR025705.1	CO-AN-CU-DN	0
LR025706.1	CO-AN-CU-DN	0
LR025707.1	CO-AN-CU-DN	0
LR025708.1	CO-AN-CU-DN	0
LR025709.1	CO-AN-CU-DN	0
LR025710.1	CO-AN-CU-DN	0
LR025711.1	CO-AN-CU-DN	0
LR025712.1	CO-AN-CU-DN	0
LR025713.1	CO-AN-CU-DN	0
LR025714.1	CO-AN-CU-DN	0
LR025715.1	CO-AN-CU-DN	0
LR025716.1	CO-AN-CU-DN	0
LR025717.1	CO-AN-CU-DN	0
LR025718.1	CO-AN-CU-DN	0
LR025719.1	CO-AN-CU-DN	0
LR025720.1	CO-AN-CU-DN	0
LR025721.1	CO-AN-CU-DN	0
LR025722.1	CO-AN-CU-DN	0
LR025723.1	CO-AN-CU-DN	0
LR025724.1	CO-AN-CU-DN	0
LR025725.1	CO-AN-CU-DN	0
LR025726.1	CO-AN-CU-DN	0
LR025727.1	CO-AN-CU-DN	0
LR025728.1	CO-AN-CU-DN	0
LR025729.1	CO-AN-CU-DN	0
LR025730.1	CO-AN-CU-DN	0
LR025731.1	CO-AN-CU-DN	0
LR025732.1	CO-AN-CU-DN	0
LR025733.1	CO-AN-CU-DN	0
LR025734.1	CO-AN-CU-DN	0
LR025735.1	CO-AN-CU-DN	0
LR025736.1	CO-AN-CU-DN	0
LR025737.1	CO-AN-CU-DN	0
LR025738.1	CO-AN-CU-DN	0
LR025739.1	CO-AN-CU-DN	0
LR025740.1	CO-AN-CU-DN	0
MH170074.1	CO-AN-CU-DN	0
MH170075.1	CO-AN-CU-DN	0
MH170076.1	CO-AN-CU-DN	0
MH170077.1	CO-AN-CU-DN	0
MH170078.1	CO-AN-CU-DN	0
MH170079.1	CO-AN-CU-DN	0
MH170080.1	CO-AN-CU-DN	0
MH170081.1	CO-AN-CU-DN	0
MH170082.1	CO-AN-CU-DN	0
MH170083.1	CO-AN-CU-DN	0
MH170084.1	CO-AN-CU-DN	0
MH170085.1	CO-AN-CU-DN	0
MH170086.1	CO-AN-CU-DN	0
MH170087.1	CO-AN-CU-DN	0
MH170088.1	CO-AN-CU-DN	0
MH170089.1	CO-AN-CU-DN	0
MH170090.1	CO-AN-CU-DN	0
MH170091.1	CO-AN-CU-DN	0
MH170092.1	CO-AN-CU-DN	0
MH170093.1	CO-AN-CU-DN	0
MH170094.1	CO-AN-CU-DN	0
MH170095.1	CO-AN-CU-DN	0
MH170096.1	CO-AN-CU-DN	0
MH170097.1	CO-AN-CU-DN	0
MH170098.1	CO-AN-CU-DN	0
MH170099.1	CO-AN-CU-DN	0
MH170100.1	CO-AN-CU-DN	0
MH170101.1	CO-AN-CU-DN	0
MH170102.1	CO-AN-CU-DN	0
MH170103.1	CO-AN-CU-DN	0
MH170104.1	CO-AN-CU-DN	0
MH170105.1	CO-AN-CU-DN	0
MH170106.1	CO-AN-CU-DN	0
MH170107.1	CO-AN-CU-DN	0
MH170108.1	CO-AN-CU-DN	0
MH170109.1	CO-AN-CU-DN	0
MH170110.1	CO-AN-CU-DN	0
MH170111.1	CO-AN-CU-DN	0
MH170112.1	CO-AN-CU-DN	0
MH170113.1	CO-AN-CU-DN	0
MH170114.1	CO-AN-CU-DN	0
MH170115.1	CO-AN-CU-DN	0
MH170116.1	CO-AN-CU-DN	0
MH170117.1	CO-AN-CU-DN	0
MH170118.1	CO-AN-CU-DN	0
MH170119.1	CO-AN-CU-DN	0
MH170120.1	CO-AN-CU-DN	0
MH170121.1	CO-AN-CU-DN	0
MH170122.1	CO-AN-CU-DN	0
MH170123.1	CO-AN-CU-DN	0
MH170124.1	CO-AN-CU-DN	0
MH170125.1	CO-AN-CU-DN	0
MH170126.1	CO-AN-CU-DN	0
MH170127.1	CO-AN-CU-DN	0
MH170128.1	CO-AN-CU-DN	0
MH170129.1	CO-AN-CU-DN	0
MH170130.1	CO-AN-CU-DN	0
MH170131.1	CO-AN-CU-DN	0
MH170132.1	CO-AN-CU-DN	0
MH170133.1	CO-AN-CU-DN	0
MH170134.1	CO-AN-CU-DN	0
MH170135.1	CO-AN-CU-DN	0
MH170136.1	CO-AN-CU-DN	0
MH170137.1	CO-AN-CU-DN	0
MH170138.1	CO-AN-CU-DN	0
MH170139.1	CO-AN-CU-DN	0
MH170140.1	CO-AN-CU-DN	0
MH170141.1	CO-AN-CU-DN	0
MH170142.1	CO-AN-CU-DN	0
MH170143.1	CO-AN-CU-DN	0
MH170144.1	CO-AN-CU-DN	0
LR025199.1	CO-AN-CU-DN	0
LR025200.1	CO-AN-CU-DN	0
LR025201.1	CO-AN-CU-DN	0
MG266057.1	CO-AN-CU-DN	0
MG916963.1	CO-AN-CU-DN	0
MG693168.1	CO-AN-CC-DN	211
MG693169.1	CO-AN-CC-DN	198
MG693170.1	CO-AN-CC-DN	207
MG693171.1	CO-AN-CC-DN	198
MG693172.1	CO-AN-CC-DN	200
MG912930.1	CO-AN-CU-DN	0
MG256393.1	CO-AN-CU-DN	0
MG256394.1	CO-AN-CU-DN	0
MG256395.1	CO-AN-CU-DN	0
MG256396.1	CO-AN-CU-DN	0
MG256397.1	CO-AN-CU-DN	0
MG256398.1	CO-AN-CU-DN	0
MG256399.1	CO-AN-CU-DN	0
MG256400.1	CO-AN-CU-DN	0
MG256401.1	CO-AN-CU-DN	0
MG256402.1	CO-AN-CU-DN	0
MG256403.1	CO-AN-CU-DN	0
MG256404.1	CO-AN-CU-DN	0
MG256405.1	CO-AN-CU-DN	0
MG256406.1	CO-AN-CU-DN	0
MG256407.1	CO-AN-CU-DN	0
MG256408.1	CO-AN-CU-DN	0
MG256409.1	CO-AN-CU-DN	0
MG256410.1	CO-AN-CU-DN	0
MG256411.1	CO-AN-CU-DN	0
MG256412.1	CO-AN-CU-DN	0
MG256413.1	CO-AN-CU-DN	0
MG256414.1	CO-AN-CU-DN	0
MG256415.1	CO-AN-CU-DN	0
MG256416.1	CO-AN-CU-DN	0
MG256417.1	CO-AN-CU-DN	0
MG256418.1	CO-AN-CU-DN	0
MG256419.1	CO-AN-CU-DN	0
MG256420.1	CO-AN-CU-DN	0
MG256421.1	CO-AN-CU-DN	0
MG256422.1	CO-AN-CU-DN	0
MG256423.1	CO-AN-CU-DN	0
MG256424.1	CO-AN-CU-DN	0
MG256425.1	CO-AN-CU-DN	0
MG256426.1	CO-AN-CU-DN	0
MG256427.1	CO-AN-CU-DN	0
MG256428.1	CO-AN-CU-DN	0
MG256429.1	CO-AN-CU-DN	0
MG256430.1	CO-AN-CU-DN	0
MG256431.1	CO-AN-CU-DN	0
MG256432.1	CO-AN-CU-DN	0
MG256433.1	CO-AN-CU-DN	0
MG256434.1	CO-AN-CU-DN	0
MG256435.1	CO-AN-CU-DN	0
MG256436.1	CO-AN-CU-DN	0
MG256437.1	CO-AN-CU-DN	0
MG256438.1	CO-AN-CU-DN	0
MG256439.1	CO-AN-CU-DN	0
MG256440.1	CO-AN-CU-DN	0
MG256441.1	CO-AN-CU-DN	0
MG256442.1	CO-AN-CU-DN	0
MG256443.1	CO-AN-CU-DN	0
MG256444.1	CO-AN-CU-DN	0
MG256445.1	CO-AN-CU-DN	0
MG256446.1	CO-AN-CU-DN	0
MG256447.1	CO-AN-CU-DN	0
MG256448.1	CO-AN-CU-DN	0
MG256449.1	CO-AN-CU-DN	0
MG256450.1	CO-AN-CU-DN	0
MG256451.1	CO-AN-CU-DN	0
MG256452.1	CO-AN-CU-DN	0
MG256453.1	CO-AN-CU-DN	0
MG256454.1	CO-AN-CU-DN	0
MG256455.1	CO-AN-CU-DN	0
MG256456.1	CO-AN-CU-DN	0
MG256457.1	CO-AN-CU-DN	0
MG256458.1	CO-AN-CU-DN	0
MG256459.1	CO-AN-CU-DN	0
MG256460.1	CO-AN-CU-DN	0
MG256461.1	CO-AN-CU-DN	0
MG256462.1	CO-AN-CU-DN	0
MG256463.1	CO-AN-CU-DN	0
MG256464.1	CO-AN-CU-DN	0
MG256465.1	CO-AN-CU-DN	0
MG256466.1	CO-AN-CU-DN	0
MG256467.1	CO-AN-CU-DN	0
MG256468.1	CO-AN-CU-DN	0
MG256469.1	CO-AN-CU-DN	0
MG256470.1	CO-AN-CU-DN	0
MG256471.1	CO-AN-CU-DN	0
MG256472.1	CO-AN-CU-DN	0
MG256473.1	CO-AN-CU-DN	0
MG256474.1	CO-AN-CU-DN	0
MG333996.1	CO-AN-CU-DN	0
MG333997.1	CO-AN-CU-DN	0
MG333998.1	CO-AN-CU-DN	0
MG333999.1	CO-AN-CU-DN	0
KY780381.1	CO-AN-CU-DN	0
KY780382.1	CO-AN-CU-DN	0
KY780383.1	CO-AN-CU-DN	0
KY780384.1	CO-AN-CU-DN	0
KY780385.1	CO-AN-CU-DN	0
KY780386.1	CO-AN-CU-DN	0
KY780387.1	CO-AN-CU-DN	0
KY780388.1	CO-AN-CU-DN	0
KY780389.1	CO-AN-CU-DN	0
KY780390.1	CO-AN-CU-DN	0
KY780391.1	CO-AN-CU-DN	0
KY780392.1	CO-AN-CU-DN	0
KY780393.1	CO-AN-CU-DN	0
KY780394.1	CO-AN-CU-DN	0
KY780395.1	CO-AN-CU-DN	0
KY780396.1	CO-AN-CU-DN	0
KY780397.1	CO-AN-CU-DN	0
KY780398.1	CO-AN-CU-DN	0
KY780399.1	CO-AN-CU-DN	0
KY780400.1	CO-AN-CU-DN	0
KX094982.1	CO-AN-CU-DN	0
KX094983.1	CO-AN-CU-DN	0
KX094984.1	CO-AN-CU-DN	0
KY938558.1	CO-AN-CG-DN	556
KY502383.1	CO-AN-CU-DN	0
KY502384.1	CO-AN-CU-DN	0
KY502385.1	CO-AN-CU-DN	0
KY502386.1	CO-AN-CU-DN	0
KY502387.1	CO-AN-CU-DN	0
KY502389.1	CO-AN-CU-DN	0
KY502390.1	CO-AN-CU-DN	0
KY502391.1	CO-AN-CU-DN	0
KY502393.1	CO-AN-CU-DN	0
KY502394.1	CO-AN-CU-DN	0
KY502397.1	CO-AN-CU-DN	0
KY502399.1	CO-AN-CU-DN	0
KY502400.1	CO-AN-CU-DN	0
KY502401.1	CO-AN-CU-DN	0
KY502402.1	CO-AN-CU-DN	0
KY502403.1	CO-AN-CU-DN	0
KY502404.1	CO-AN-CU-DN	0
KY502405.1	CO-AN-CU-DN	0
KY820767.1	CO-AN-CU-DN	0
KY820768.1	CO-AN-CU-DN	0
KY820769.1	CO-AN-CU-DN	0
KY820770.1	CO-AN-CU-DN	0
KY820771.1	CO-AN-CU-DN	0
KY820772.1	CO-AN-CU-DN	0
KY820773.1	CO-AN-CU-DN	0
KY820774.1	CO-AN-CU-DN	0
KY820775.1	CO-AN-CU-DN	0
KY820776.1	CO-AN-CU-DN	0
KY820777.1	CO-AN-CU-DN	0
KY820778.1	CO-AN-CU-DN	0
KY820779.1	CO-AN-CU-DN	0
KY820780.1	CO-AN-CU-DN	0
KY820781.1	CO-AN-CU-DN	0
KY820782.1	CO-AN-CU-DN	0
KY820783.1	CO-AN-CU-DN	0
KY820784.1	CO-AN-CU-DN	0
KY820785.1	CO-AN-CU-DN	0
KY820786.1	CO-AN-CU-DN	0
KY820787.1	CO-AN-CU-DN	0
KY820788.1	CO-AN-CU-DN	0
KY820789.1	CO-AN-CU-DN	0
KY820790.1	CO-AN-CU-DN	0
KY820791.1	CO-AN-CU-DN	0
KY820792.1	CO-AN-CU-DN	0
KY820793.1	CO-AN-CU-DN	0
KY820794.1	CO-AN-CU-DN	0
KY820795.1	CO-AN-CU-DN	0
KY820796.1	CO-AN-CU-DN	0
KY820797.1	CO-AN-CU-DN	0
KY820798.1	CO-AN-CU-DN	0
KY820799.1	CO-AN-CU-DN	0
KY820800.1	CO-AN-CU-DN	0
KY820801.1	CO-AN-CU-DN	0
KY820802.1	CO-AN-CU-DN	0
KY820803.1	CO-AN-CU-DN	0
KY820804.1	CO-AN-CU-DN	0
KY820805.1	CO-AN-CU-DN	0
KY820806.1	CO-AN-CU-DN	0
KY820807.1	CO-AN-CU-DN	0
KY783842.1	CO-AN-CC-DN	4
KY783843.1	CO-AN-CC-DN	4
KY783844.1	CO-AN-CC-DN	4
KY783845.1	CO-AN-CC-DN	4
KY783846.1	CO-AN-CC-DN	3
KY783847.1	CO-AN-CC-DN	3
KY783848.1	CO-AN-CC-DN	1
KY783849.1	CO-AN-CC-DN	5
KY783850.1	CO-AN-CC-DN	2
KY783851.1	CO-AN-CC-DN	3
KY783855.1	CO-AN-CU-DN	0
KY783856.1	CO-AN-CU-DN	0
KY783857.1	CO-AN-CU-DN	0
KY783858.1	CO-AN-CU-DN	0
KY783859.1	CO-AN-CU-DN	0
KY783860.1	CO-AN-CU-DN	0
KY783861.1	CO-AN-CU-DN	0
KY783862.1	CO-AN-CU-DN	0
KY783863.1	CO-AN-CU-DN	0
KY783864.1	CO-AN-CU-DN	0
KY783865.1	CO-AN-CU-DN	0
KY783866.1	CO-AN-CU-DN	0
KY783867.1	CO-AN-CU-DN	0
KY783868.1	CO-AN-CU-DN	0
KY783869.1	CO-AN-CU-DN	0
KY783870.1	CO-AN-CU-DN	0
KY783871.1	CO-AN-CU-DN	0
KY783872.1	CO-AN-CU-DN	0
KY783873.1	CO-AN-CU-DN	0
KY783874.1	CO-AN-CU-DN	0
KY783875.1	CO-AN-CU-DN	0
KY783876.1	CO-AN-CU-DN	0
KY783877.1	CO-AN-CU-DN	0
KY783878.1	CO-AN-CU-DN	0
KY783879.1	CO-AN-CU-DN	0
KY783880.1	CO-AN-CU-DN	0
KY783881.1	CO-AN-CU-DN	0
KY783882.1	CO-AN-CU-DN	0
KY783883.1	CO-AN-CU-DN	0
KY783884.1	CO-AN-CU-DN	0
KY783885.1	CO-AN-CU-DN	0
KY783886.1	CO-AN-CU-DN	0
KY783887.1	CO-AN-CU-DN	0
KY783888.1	CO-AN-CU-DN	0
KY783889.1	CO-AN-CU-DN	0
KY783890.1	CO-AN-CU-DN	0
KY783891.1	CO-AN-CU-DN	0
KY783892.1	CO-AN-CU-DN	0
KY783893.1	CO-AN-CU-DN	0
KY783894.1	CO-AN-CU-DN	0
KY783895.1	CO-AN-CU-DN	0
KY783896.1	CO-AN-CU-DN	0
KY783897.1	CO-AN-CU-DN	0
KY783898.1	CO-AN-CU-DN	0
KY783899.1	CO-AN-CU-DN	0
KY783900.1	CO-AN-CU-DN	0
KY783901.1	CO-AN-CU-DN	0
KY783902.1	CO-AN-CU-DN	0
KY783903.1	CO-AN-CU-DN	0
KX574227.1	CO-AN-CG-DN	213
KY770850.1	CO-AN-CG-DN	184
KY770851.1	CO-AN-CG-DN	195
KY770852.1	CO-AN-CU-DN	0
KY770853.1	CO-AN-CU-DN	0
KY770854.1	CO-AN-CU-DN	2
KY770855.1	CO-AN-CU-DN	0
KY770856.1	CO-AN-CU-DN	1
KY770857.1	CO-AN-CU-DN	2
KY770858.1	CO-AN-CG-DN	662
KY770859.1	CO-AN-CG-DN	661
KY770860.1	CO-AN-CG-DN	586
KY432454.1	CO-AN-CU-DN	0
KY432455.1	CO-AN-CU-DN	0
KY432456.1	CO-AN-CU-DN	0
KY432457.1	CO-AN-CU-DN	0
KY432458.1	CO-AN-CU-DN	0
KY432459.1	CO-AN-CU-DN	0
KY432460.1	CO-AN-CU-DN	0
KY432461.1	CO-AN-CU-DN	0
KY432462.1	CO-AN-CU-DN	0
KY432463.1	CO-AN-CU-DN	0
KY432464.1	CO-AN-CU-DN	0
KY432465.1	CO-AN-CU-DN	0
KY432466.1	CO-AN-CU-DN	0
KY432467.1	CO-AN-CU-DN	0
KY432468.1	CO-AN-CU-DN	0
KY432469.1	CO-AN-CU-DN	0
KY432470.1	CO-AN-CU-DN	0
KY432471.1	CO-AN-CU-DN	0
KY009612.1	CO-AN-CU-DN	0
KY009613.1	CO-AN-CU-DN	0
KY009614.1	CO-AN-CU-DN	0
KY009615.1	CO-AN-CU-DN	0
KY009616.1	CO-AN-CU-DN	0
KY009617.1	CO-AN-CU-DN	0
KY009618.1	CO-AN-CU-DN	0
KY009619.1	CO-AN-CU-DN	0
KY009620.1	CO-AN-CU-DN	0
KY009621.1	CO-AN-CU-DN	0
KY009622.1	CO-AN-CU-DN	0
KY009623.1	CO-AN-CU-DN	0
KY009624.1	CO-AN-CU-DN	0
KY009625.1	CO-AN-CU-DN	0
KY009626.1	CO-AN-CU-DN	0
KY009627.1	CO-AN-CU-DN	0
KY009628.1	CO-AN-CU-DN	0
KY009629.1	CO-AN-CU-DN	0
KY009630.1	CO-AN-CU-DN	0
KY009631.1	CO-AN-CU-DN	0
KY009632.1	CO-AN-CU-DN	0
KY009633.1	CO-AN-CU-DN	0
KY009634.1	CO-AN-CU-DN	0
KP231507.1	CO-AN-CU-DN	0
KP231508.1	CO-AN-CU-DN	0
KP231509.1	CO-AN-CU-DN	0
KP231510.1	CO-AN-CU-DN	0
KP231511.1	CO-AN-CU-DN	0
KP231512.1	CO-AN-CU-DN	0
KP231513.1	CO-AN-CU-DN	0
KP231514.1	CO-AN-CU-DN	0
KP231515.1	CO-AN-CU-DN	0
KP231516.1	CO-AN-CU-DN	0
KP231517.1	CO-AN-CU-DN	0
KP231518.1	CO-AN-CU-DN	0
KP231519.1	CO-AN-CU-DN	0
KP231520.1	CO-AN-CU-DN	0
KP231521.1	CO-AN-CU-DN	0
KX520653.1	CO-AN-CU-DN	0
KX520654.1	CO-AN-CU-DN	0
KX520655.1	CO-AN-CU-DN	0
KX520656.1	CO-AN-CU-DN	0
KX520657.1	CO-AN-CU-DN	0
KX520658.1	CO-AN-CU-DN	0
KX520659.1	CO-AN-CU-DN	0
KX520660.1	CO-AN-CU-DN	0
KX520661.1	CO-AN-CU-DN	0
KX520662.1	CO-AN-CU-DN	0
KU528585.1	CO-AN-CU-DN	0
KU528586.1	CO-AN-CU-DN	0
KU528587.1	CO-AN-CU-DN	0
KU528588.1	CO-AN-CU-DN	0
KU528589.1	CO-AN-CU-DN	0
KU528590.1	CO-AN-CU-DN	0
KU528591.1	CO-AN-CC-DN	2
KU182954.1	CO-AN-CU-DN	0
KU182955.1	CO-AN-CU-DN	1
KU182956.1	CO-AN-CU-DN	5
KU182957.1	CO-AN-CU-DN	5
KU182958.1	CO-AN-CU-DN	1
KU182959.1	CO-AN-CU-DN	0
KU182960.1	CO-AN-CU-DN	0
KU182961.1	CO-AN-CU-DN	3
KU182962.1	CO-AN-CU-DN	3
KU182963.1	CO-AN-CU-DN	33
KU182964.1	CO-AN-CG-DN	548
KU182965.1	CO-AN-CG-DN	249
KU182966.1	CO-AN-CC-DN	142
KU182967.1	CO-AN-CU-DN	0
KU182968.1	CO-AN-CU-DN	0
KU182969.1	CO-AN-CU-DN	0
KU182970.1	CO-AN-CU-DN	0
KU182971.1	CO-AN-CU-DN	0
KU182972.1	CO-AN-CU-DN	0
KU182973.1	CO-AN-CU-DN	2
KU182974.1	CO-AN-CU-DN	0
KU182975.1	CO-AN-CU-DN	0
KU182976.1	CO-AN-CU-DN	0
KU182977.1	CO-AN-CU-DN	0
KU182978.1	CO-AN-CU-DN	0
KU182979.1	CO-AN-CU-DN	0
KU182980.1	CO-AN-CU-DN	0
KU182981.1	CO-AN-CU-DN	0
KU182982.1	CO-AN-CU-DN	0
KU182983.1	CO-AN-CU-DN	0
KU182984.1	CO-AN-CU-DN	0
KU182985.1	CO-AN-CU-DN	0
KU182986.1	CO-AN-CU-DN	0
KU182987.1	CO-AN-CU-DN	0
KU182988.1	CO-AN-CU-DN	0
KU182989.1	CO-AN-CU-DN	0
KU182990.1	CO-AN-CU-DN	0
KU182991.1	CO-AN-CU-DN	0
KU182992.1	CO-AN-CU-DN	0
KU182993.1	CO-AN-CU-DN	0
KU182994.1	CO-AN-CU-DN	0
KU182995.1	CO-AN-CU-DN	0
KU182996.1	CO-AN-CU-DN	0
KU182997.1	CO-AN-CU-DN	0
KU182998.1	CO-AN-CU-DN	0
KU182999.1	CO-AN-CU-DN	0
KU183000.1	CO-AN-CU-DN	0
KU183001.1	CO-AN-CU-DN	0
KU183002.1	CO-AN-CU-DN	0
KU183003.1	CO-AN-CU-DN	0
KU183004.1	CO-AN-CU-DN	24
KU183005.1	CO-AN-CU-DN	3
KT581588.1	CO-AN-CU-DN	0
KT581589.1	CO-AN-CU-DN	0
KT581590.1	CO-AN-CU-DN	0
KT581591.1	CO-AN-CU-DN	0
KT581592.1	CO-AN-CU-DN	0
KT581593.1	CO-AN-CU-DN	0
KT581594.1	CO-AN-CU-DN	0
KT581595.1	CO-AN-CU-DN	0
KT581596.1	CO-AN-CU-DN	0
KT581597.1	CO-AN-CU-DN	0
KT581598.1	CO-AN-CU-DN	0
KT581599.1	CO-AN-CU-DN	0
KT581600.1	CO-AN-CU-DN	0
KT581601.1	CO-AN-CU-DN	0
KT581602.1	CO-AN-CU-DN	0
KT581603.1	CO-AN-CU-DN	0
KT346229.1	CO-AN-CU-DN	0
KT346230.1	CO-AN-CU-DN	0
KT346231.1	CO-AN-CU-DN	0
KT346232.1	CO-AN-CU-DN	0
KT346233.1	CO-AN-CU-DN	0
KT346234.1	CO-AN-CU-DN	0
KT346235.1	CO-AN-CU-DN	0
KT346236.1	CO-AN-CU-DN	0
KT346237.1	CO-AN-CU-DN	0
KT346238.1	CO-AN-CU-DN	0
KT346239.1	CO-AN-CU-DN	0
KT346240.1	CO-AN-CU-DN	0
KT346241.1	CO-AN-CU-DN	0
KT346242.1	CO-AN-CU-DN	0
KT346243.1	CO-AN-CU-DN	0
KT346244.1	CO-AN-CU-DN	0
KT346245.1	CO-AN-CU-DN	0
KT346246.1	CO-AN-CU-DN	0
KT346247.1	CO-AN-CU-DN	0
KT346248.1	CO-AN-CU-DN	0
KT346249.1	CO-AN-CU-DN	0
KT346250.1	CO-AN-CU-DN	0
KT368821.1	CO-AN-CU-DN	0
KM215146.1	CO-AN-CU-DN	0
KM215147.1	CO-AN-CU-DN	0
KJ020577.1	CO-AN-CU-DN	0
KJ020578.1	CO-AN-CU-DN	0
KJ020579.1	CO-AN-CU-DN	0
KJ020580.1	CO-AN-CU-DN	0
KJ020581.1	CO-AN-CU-DN	0
KJ020582.1	CO-AN-CU-DN	0
KJ020583.1	CO-AN-CU-DN	0
KJ020584.1	CO-AN-CU-DN	0
KJ020585.1	CO-AN-CU-DN	0
KJ020586.1	CO-AN-CU-DN	0
KJ020587.1	CO-AN-CU-DN	0
KJ020588.1	CO-AN-CU-DN	0
KJ020589.1	CO-AN-CU-DN	0
KJ020590.1	CO-AN-CU-DN	1
KJ020591.1	CO-AN-CU-DN	0
KJ020592.1	CO-AN-CU-DN	0
KJ020593.1	CO-AN-CU-DN	0
KJ020594.1	CO-AN-CU-DN	0
KJ020595.1	CO-AN-CU-DN	0
KJ020596.1	CO-AN-CU-DN	0
KJ020597.1	CO-AN-CU-DN	0
KJ020598.1	CO-AN-CU-DN	0
KJ020599.1	CO-AN-CU-DN	0
KJ020600.1	CO-AN-CU-DN	0
KJ020601.1	CO-AN-CU-DN	0
KJ020602.1	CO-AN-CU-DN	0
KJ020603.1	CO-AN-CU-DN	0
KJ020604.1	CO-AN-CU-DN	0
KJ020605.1	CO-AN-CU-DN	0
KJ020606.1	CO-AN-CU-DN	0
KJ020607.1	CO-AN-CU-DN	0
KJ020608.1	CO-AN-CU-DN	0
KJ020609.1	CO-AN-CU-DN	0
KJ020610.1	CO-AN-CU-DN	0
KJ020611.1	CO-AN-CU-DN	0
KJ020612.1	CO-AN-CU-DN	0
KJ020613.1	CO-AN-CU-DN	0
KJ020614.1	CO-AN-CU-DN	0
KJ020615.1	CO-AN-CU-DN	0
KJ020616.1	CO-AN-CU-DN	0
KJ020617.1	CO-AN-CU-DN	0
KJ020618.1	CO-AN-CU-DN	0
KJ020619.1	CO-AN-CU-DN	0
KJ020620.1	CO-AN-CU-DN	0
KJ020621.1	CO-AN-CU-DN	0
KJ020622.1	CO-AN-CU-DN	0
KJ020623.1	CO-AN-CU-DN	0
KJ020624.1	CO-AN-CU-DN	0
KJ020625.1	CO-AN-CU-DN	0
KJ020626.1	CO-AN-CU-DN	0
KJ020627.1	CO-AN-CU-DN	0
KJ020628.1	CO-AN-CU-DN	0
KJ020629.1	CO-AN-CU-DN	0
KJ020630.1	CO-AN-CU-DN	0
KJ020631.1	CO-AN-CU-DN	0
KJ020632.1	CO-AN-CU-DN	0
KJ020633.1	CO-AN-CU-DN	0
KJ020634.1	CO-AN-CU-DN	0
KJ020635.1	CO-AN-CU-DN	0
KJ020636.1	CO-AN-CU-DN	0
KJ652018.1	CO-AN-CU-DN	0
KJ868721.1	CO-AN-CU-DN	0
KJ868722.1	CO-AN-CU-DN	0
KF294268.1	CO-AN-CU-DN	2
KF294269.1	CO-AN-CU-DN	1
KF294270.1	CO-AN-CU-DN	1
KF294271.1	CO-AN-CU-DN	1
KF294272.1	CO-AN-CU-DN	0
KF294273.1	CO-AN-CU-DN	1
KF294274.1	CO-AN-CU-DN	0
KF294275.1	CO-AN-CU-DN	1
KF294276.1	CO-AN-CU-DN	1
KF294277.1	CO-AN-CU-DN	2
KF294278.1	CO-AN-CU-DN	1
KF294279.1	CO-AN-CU-DN	0
KF294280.1	CO-AN-CU-DN	1
KF294281.1	CO-AN-CU-DN	1
KF294282.1	CO-AN-CU-DN	2

III. Closing Comments

I am currently updating all of my World Ocean Database files (over 5.5 billion in situ measurements) and will be posting updates on seaports, ghost plumes, ghost photons, and general world ocean subjects.

The next post in this series is here, the previous post in this series is here.

Tuesday, June 23, 2020

On The Origin Of The Home Of COVID-19 - 6

Microbe Whisperers

I. Introduction

In today's post we will take a look at a SARS-CoV-2 (a.k.a. Covid-19) nucleobase/nucleic acid sequences 'map' from a human in the state of Washington, U.S.A.

It will be compared to about 500 samples of nucleobase/nucleic acid sequences 'maps' taken from the rumen (first stomach) of cows in the U.S.A. and elsewhere.

Many such nucleotide maps are stored at Genbank, and are available for downloading.

A nucleotide in fasta format map looks like:

[description]
GTTTTTTTGTGTTGCCGGTCAAAACGCGATGACGTTCCCGCCTCTTCCCGTTCCCGGCAC
AGAGCCCTAAGCGTCACCACGGCGACGGTCAGCGACATGGGAAGGCGCAGGTAACCGCCC
CCTAAGAGGGAGTCACTGTTAAAACAGCGGCTCCCTCGTTTTTTTGTTGCCGGTCAAAGC
GCGATGACGTTCCCGCCTTTTCCCGTTCCTGGCACAGAGCCCTAAGCATCACCACGGCGA
CGGTCAGCGACATGGGAAGGCGTAGGTAACCGCCCCCTAAGAGAGGTGATGTCAGCAATG
ATGTCGCCTCTCGTTTTTTTGTTGCCGGTCAAAACGCGATGACGTTCCCGCCTCTTCCCG
TTCCTGGCACAGAGCCCTAAGCGTCACCACGGCGACGGTCAGCGACATGGGAAGGCGCAG
GTAACCGCCCCCTAAGAGGGAGTCACTGGTAAAACAGCGGCTCCCTCGTTTTTTTGTGTC
CTGTAGAAGCTATAGTTTTTATAACTACTATAGGGTGTCATGGTTGTGGGTTGTTTTTGC
TTTGAGATTGGCGTTGTTTGTTTTTTTTTAGTAATTTAGCATCGTTATCATTCGTAATTA
ATAACCAGAATTAAGATAAAATATTAAAAATGAAGCATTTAATATCTATCTTGCTGTTGC
...

(see fasta format). Human and microbe nucleotide maps "look the same" in one sense, however, the sequences are different even though there may be 'segments' or 'sections' that match between species.

This can happen in recombinant emergence situations, and it can cause major changes in the hosts in which such changes take place.

Consider placental mammals for example:

"If not for a virus, none of us [placental human mammals] would ever be born.

In 2000, a team of Boston scientists discovered a peculiar gene in the human genome. It encoded a protein made only by cells in the placenta. They called it syncytin.

The cells that made syncytin were located only where the placenta made contact with the uterus. They fuse together to create a single cellular layer, called the syncytiotrophoblast, which is essential to a fetus for drawing nutrients from its mother. The scientists discovered that in order to fuse together, the cells must first make syncytin.

What made syncytin peculiar was that it was not a human gene. It bore all the hallmarks of a gene from a virus."

(The Uncertain Gene - 5, cf. Retroviruses turned egg-layers into live-bearers, The placenta goes viral: Retroviruses control gene expression in pregnancy). What? Virus nucleobases in humans, virus genes that give us a start at life so to speak?

As it turns out, one of the likely homes of Covid-19 is going to be a surprise (Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery).

II. The Comparison Experiment

So, as I said, we are going to look for human Covid-19 nucleotide segments in cow nucleotide/nucleic acid sequences maps.

This is important because cattle are a big part of our food production system.

The report of what I found in the search via software modules I developed is contained in Appendices A-F as follows:

Nucleobase Comparison	Appendix Location
1 - 6	Appendix A
9 - 15	Appendix B
16 - 22	Appendix C
23 - 30	Appendix D
31 - 37	Appendix E
38 - 51	Appendix F

The number of matches between segments of SARS-CoV-2 and segments of microbes in cow rumens might surprise you as it did me.

III. How The Results Were Derived

After downloading SARS-CoV-2 and bovine nucleobases/nucleic acid sequences I wrote software to iterate through the SARS-CoV-2 human nucleobase/nucleic acid sequences example from Washington, one ten-base-segment at a time.

The comparisons then take place while searching through ten bovine nucleobases/nucleic acid sequences (0000 - 0009) per bovine data file.

The search is for that particular SARS-CoV-2 segment in those bovine rumen nucleobases/nucleic acid sequences in each bovine data file.

The results in Appendices A-F give rise to some interesting inferences (got comments? got questions?).

IV. Closing Comments

I think that the hypothesis of this series is bolstered by the results of this SARS-CoV-2 vs. Bovine nucleobase/nucleic acid sequences comparison experiment.

The next post in this series is here, previous post in this series is here.

Appendix A

This is an appendix to: On The Origin Of The Home Of COVID-19 - 6

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0001 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	107
0001	127
0002	75
0003	118
0004	97
0005	47
0006	66
0007	130
0008	75
0009	65

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0002 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	55
0001	59
0002	103
0003	93
0004	54
0005	210
0006	136
0007	139
0008	78
0009	108

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0003 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	140
0001	131
0002	99
0003	51
0004	32
0005	83
0006	92
0007	136
0008	69
0009	57

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0004 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	460
0001	228
0002	106
0003	147
0004	81
0005	104
0006	80
0007	93
0008	284
0009	69

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0005 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	238
0001	70
0002	70
0003	71
0004	67
0005	81
0006	79
0007	48
0008	65
0009	53

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0006 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	157
0001	66
0002	126
0003	95
0004	88
0005	53
0006	46
0007	89
0008	32
0009	64

Appendix B

This is an appendix to: On The Origin Of The Home Of COVID-19 - 6

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0009 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	150
0001	51
0002	232
0003	92
0004	79
0005	125
0006	82
0007	82
0008	80
0009	91

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0010 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	148
0001	126
0002	74
0003	118
0004	46
0005	88
0006	59
0007	139
0008	47
0009	88

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0011 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	210
0001	86
0002	74
0003	68
0004	152
0005	55
0006	89
0007	135
0008	116
0009	71

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0012 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	166
0001	119
0002	136
0003	86
0004	123
0005	127
0006	55
0007	70
0008	88
0009	60

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0013 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	82
0001	212
0002	200
0003	202
0004	65
0005	232
0006	66
0007	133
0008	74
0009	84

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0014 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	302
0001	119
0002	218
0003	92
0004	121
0005	112
0006	71
0007	58
0008	144
0009	66

Covid Bases ID: MT641485.1
(sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome
virus type: SC-HS-CG-DN)

Target bases to search: cattle rumen

Rumen File Type 10676_0015
Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	176
0001	77
0002	81
0003	226
0004	178
0005	107
0006	52
0007	141
0008	46
0009	101

Appendix C

This is an appendix to: On The Origin Of The Home Of COVID-19 - 6

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0016 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	265
0001	133
0002	90
0003	96
0004	151
0005	88
0006	130
0007	102
0008	51
0009	68

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0017 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	118
0001	185
0002	87
0003	68
0004	68
0005	90
0006	125
0007	88
0008	49
0009	147

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0018 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	153
0001	155
0002	285
0003	154
0004	122
0005	132
0006	146
0007	172
0008	148
0009	88

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0019 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	98
0001	162
0002	103
0003	119
0004	43
0005	77
0006	70
0007	88
0008	65
0009	68

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0020 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	153
0001	79
0002	126
0003	88
0004	52
0005	46
0006	29
0007	88
0008	37
0009	61

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0021 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	151
0001	110
0002	139
0003	136
0004	204
0005	115
0006	77
0007	181
0008	51
0009	141

Covid Bases ID: MT641485.1
(sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome
virus type: SC-HS-CG-DN)

Target bases to search: cattle rumen

Rumen File Type 10676_0022
Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	171
0001	132
0002	82
0003	105
0004	88
0005	151
0006	69
0007	57
0008	109
0009	85

Appendix D

This is an appendix to: On The Origin Of The Home Of COVID-19 - 6

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0023 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	141
0001	159
0002	98
0003	110
0004	167
0005	200
0006	129
0007	108
0008	78
0009	79

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0024 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	117
0001	221
0002	83
0003	96
0004	105
0005	114
0006	86
0007	66
0008	70
0009	97

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0025 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	154
0001	149
0002	144
0003	119
0004	111
0005	103
0006	97
0007	41
0008	88
0009	101

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0027 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	149
0001	142
0002	104
0003	144
0004	140
0005	79
0006	61
0007	67
0008	95
0009	88

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0028 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	117
0001	171
0002	116
0003	124
0004	186
0005	82
0006	80
0007	105
0008	165
0009	60

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0028 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	117
0001	171
0002	116
0003	124
0004	186
0005	82
0006	80
0007	105
0008	165
0009	60

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0029 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	122
0001	35
0002	110
0003	140
0004	61
0005	43
0006	53
0007	42
0008	88
0009	88

Covid Bases ID: MT641485.1
(sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome
virus type: SC-HS-CG-DN)

Target bases to search: cattle rumen

Rumen File Type 10676_0030
Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	173
0001	269
0002	131
0003	271
0004	232
0005	166
0006	136
0007	69
0008	74
0009	85

Appendix E

This is an appendix to: On The Origin Of The Home Of COVID-19 - 6

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0031 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	167
0001	192
0002	103
0003	96
0004	149
0005	63
0006	98
0007	36
0008	27
0009	74

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0032 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	212
0001	180
0002	180
0003	251
0004	186
0005	43
0006	67
0007	63
0008	76
0009	46

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0033 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	136
0001	139
0002	84
0003	67
0004	74
0005	69
0006	73
0007	54
0008	87
0009	71

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0033 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	136
0001	139
0002	84
0003	67
0004	74
0005	69
0006	73
0007	54
0008	87
0009	71

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0034 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	153
0001	262
0002	156
0003	111
0004	79
0005	57
0006	46
0007	39
0008	39
0009	109

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0035 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	232
0001	137
0002	209
0003	61
0004	70
0005	127
0006	149
0007	155
0008	69
0009	130

Covid Bases ID: MT641485.1 (sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome virus type: SC-HS-CG-DN) Target bases to search: cattle rumen Rumen File Type 10676_0036 Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	270
0001	87
0002	54
0003	87
0004	80
0005	91
0006	98
0007	87
0008	59
0009	65

Covid Bases ID: MT641485.1
(sars coronavirus 2 isolate SARS-CoV-2 human USA WA-S709 2020 complete genome
virus type: SC-HS-CG-DN)

Target bases to search: cattle rumen

Rumen File Type 10676_0037
Search Results:
Rumen File Section Number	Covid-19 Segments Found
0000	70
0001	247
0002	120
0003	121
0004	181
0005	200
0006	54
0007	95
0008	142
0009	99

Pages

Thursday, June 25, 2020

Tuesday, June 23, 2020