This is an appendix to: Quantum Biology - 11
28) Codon Usage Bias:
About: Lassa virus segment L, complete sequence (7279bp)
VERSION: NC_004297.1
CODONS & LOCATIONS:
GCT: 51,163,166,303,504,662,1034,1192,1274,1358,1362,1407,
1618,1742,1763,1817,1825,1935,2245,2315,2514,2529,
2559,2650,2886,2912,2915,3010,3093,3287,3356,3380,
3467,3559,3658,3665,3851,3901,4137,4332,4383,4399,
4458,4483,4494,4518,4563,4580,4587,4654,4658,4670,
4886,4906,5050,5214,5240,5301,5335,5360,5372,5519,
5574,5617,5761,5934,6051,6242,6315,6331,6417,6431,
6571,6747,6750,6783,6939,7020,7040,7106,7128,7169,
7185
GCT count: 83
GCC: 42,81,87,114,118,132,146,184,223,272,300,426,433,447,
520,623,668,720,746,833,859,975,1042,1148,1165,1419,
1587,1869,2130,2143,2275,2471,2481,2601,2682,2707,
2873,2992,3423,3538,3575,3774,3878,3890,4079,4306,
4321,4327,4436,4461,4490,4574,4678,4791,5183,5292,
5837,5922,5929,5966,6451,6838,7253,7261
GCC count: 64
GCA: 2,18,77,196,247,265,312,327,337,484,590,635,665,705,
756,870,895,933,1106,1187,1208,1253,1280,1385,1479,
1550,1607,1928,2015,2030,2047,2260,2282,2300,2325,
2336,2417,2468,2653,2657,2737,2771,2778,2837,2918,
2940,2981,3087,3146,3163,3179,3209,3276,3417,3471,
3608,3637,4007,4163,4403,4416,4445,4673,4822,4850,
4895,5002,5308,5396,5407,5438,5443,5452,5527,5770,
5828,6004,6059,6074,6151,6215,6284,6414,6460,6467,
6611,6794,6822,6943,6958,7011,7029,7131,7175,7209,
7227
GCA count: 96
GCG: 330,1331,2121,3813,4566,5549,5612,6299,6493,6633,6953,
7277
GCG count: 12
CGT: 925,1522,1566,3154,3627,4425,4990,5225,6696,6841,6855,
7065,7202
CGT count: 13
CGC: (0)
CGA: 109,173,375,402,480,766,2234,2342,2842,2922,4413,4812,
5449,5949,6270,6408,6541,6723
CGA count: 18
CGG: 6,323,412,440,658,1017,1096,1122,1226,2702,5580,5730,
6859,7273
CGG count: 14
AGA: 92,101,128,160,268,291,342,585,629,642,681,763,800,
1089,1139,1287,1400,1459,1570,1663,1678,1728,1733,
1770,1778,1820,1879,2007,2043,2149,2182,2189,2213,
2278,2320,2356,2485,2500,2506,2537,2553,2566,2638,
2748,2807,2909,2968,3059,3101,3114,3118,3136,3271,
3298,3306,3367,3441,3483,3504,3513,3565,3710,3763,
3805,3875,3931,4020,4158,4170,4197,4272,4286,4465,
4472,4526,4548,4551,4615,4691,4750,4760,4763,4857,
4937,5065,5075,5177,5201,5221,5270,5323,5584,5587,
5733,5914,5974,6000,6007,6065,6089,6121,6490,6506,
6556,6564,6627,6630,6681,6799,6830,6888,6905,6919,
6961,6978,6987,7034,7146,7155,7172,7213,7216,7223,
7235,7248
AGA count: 125
AGG: 143,181,252,820,828,878,898,964,1054,1178,1264,1312,
1527,1941,1957,1996,2040,2067,2389,2408,2458,2495,
2662,2761,2782,2790,2824,3007,3206,3397,3434,3602,
3787,3962,4099,4318,4339,4430,4529,5010,5108,5153,
5210,5255,5389,5625,5680,5870,5898,6044,6062,6137,
6664,6734,6880,7076,7195,7205,7265
AGG count: 59
AAT: 65,365,472,527,533,685,743,751,836,908,955,994,1009,
1290,1298,1337,1352,1366,1438,1454,1463,1535,1556,
1578,1582,1596,1673,1690,1695,1781,1832,1838,1885,
1916,1947,1974,2055,2076,2133,2140,2162,2185,2197,
2206,2252,2264,2297,2383,2392,2424,2571,2644,2665,
2669,2689,2744,2758,2851,2863,2933,2936,2963,2995,
3042,3068,3121,3183,3187,3202,3216,3233,3294,3309,
3361,3490,3495,3521,3578,3590,3617,3675,3718,3725,
3837,3897,3916,3957,3978,4096,4128,4142,4184,4235,
4255,4276,4360,4392,4395,4420,4479,4607,4662,4730,
4770,4800,4871,4919,4970,4993,5023,5084,5129,5149,
5169,5245,5326,5366,5379,5402,5434,5473,5483,5498,
5514,5558,5621,5684,5749,5754,5788,5845,5858,5865,
6082,6086,6110,6140,6172,6224,6230,6259,6306,6377,
6437,6483,6533,6551,6597,6714,6755,6772,6973,7007,
7037,7058,7239,7244,7258
AAT count: 158
AAC: 72,177,201,219,286,308,320,450,464,582,594,602,654,
713,778,817,874,929,949,952,961,1001,1024,1066,1077,
1203,1222,1229,1307,1318,1323,1389,1412,1426,1441,
1498,1517,1603,1667,1685,1753,1760,1853,1899,1903,
1979,1987,2063,2079,2125,2159,2289,2360,2444,2518,
2525,2585,2612,2633,2697,2725,2821,2956,2975,2987,
3017,3050,3171,3191,3261,3344,3583,3650,3695,3767,
3831,3845,3950,4035,4088,4211,4219,4250,4262,4357,
4369,4498,4636,4639,4642,4737,4783,4841,4940,4950,
5014,5027,5033,5071,5096,5111,5116,5251,5288,5353,
5419,5504,5709,5725,5815,5889,5977,5992,6014,6027,
6157,6208,6251,6326,6340,6350,6389,6516,6644,6808,
6813,6852,6870,6967,6995,7043
AAC count: 131
GAT: 10,122,548,984,1012,1037,1155,1183,1328,1341,1347,
1502,1682,1773,1859,1888,1893,1925,2036,2167,2303,
2311,2371,2463,2549,2847,2854,3030,3104,3108,3126,
3175,3221,3265,3444,3552,3647,4015,4206,4227,4232,
4246,4298,4353,4386,4687,4695,4702,4754,4766,4899,
4962,5125,5163,5166,5174,5278,5469,5541,5706,5713,
5773,5809,5877,5908,5952,6143,6239,6396,6448,6486,
6530,6686,6718,6803,7085,7139,7192
GAT count: 78
GAC: 333,418,572,698,1061,1085,1215,1242,1256,1467,1736,
1796,1814,2083,2176,2192,2201,2380,2827,2998,3243,
3323,3525,3758,3872,3971,4028,4073,4109,4336,4914,
5273,5511,5533,5722,6162,6354,6581,6655,6983,7055,
7099
GAC count: 42
TGT: 28,46,156,211,242,255,514,551,615,676,723,771,812,
823,988,1020,1133,1151,1237,1434,1509,1543,1599,1649,
1659,1722,1842,1964,1990,2155,2307,2374,2438,2578,
2581,2619,2731,2801,2857,2866,2882,2904,2929,3097,
3225,3228,3249,3316,3326,3414,3462,3500,3572,3630,
3653,3703,3732,3746,3781,3809,3865,3984,4000,4063,
4069,4084,4106,4115,4224,4503,4521,4624,4743,4819,
4854,4863,4890,4966,4981,5007,5145,5266,5283,5341,
5344,5348,5424,5461,5480,5490,5567,5698,5716,5903,
5925,5962,6035,6103,6266,6276,6309,6381,6498,6608,
6671,6678,6849,6883,6924,6933,7024,7049,7068,7110,
7122,7161
TGT count: 116
TGC: 2333
TGC count: 1
CAA: 97,283,459,789,856,912,1284,1371,1382,1575,2271,2534,
3111,3252,3517,3669,4389,4666,4947,5020,5190,5608,
5739,5842,5971,6078,6118,6220,6588,6786
CAA count: 30
CAG: 104,150,356,611,891,1069,1246,1748,2020,2604,2623,
2717,3507,3634,3860,3868,4121,4557,4788,4881,5121,
5476,5487,5643,5653,6659,6844,7103,7179
CAG count: 29
GAA: 1048,1271,1944,1969,2347,3364,3487,3599,4041,4594,
4996,5363,5376,5501,6763
GAA count: 15
GAG: 39,192,1112,1301,2596,3025,3797,3934,3981,6464
GAG count: 10
GGT: 25,169,188,759,807,883,887,967,1559,1643,1793,1810,
1835,1863,2228,2386,2556,2754,3078,3139,3856,4053,
4193,4301,4684,4805,4931,5235,5552,5647,5799,5833,
5848,6180,6236,6255,6456,6707,6897,7134,7164
GGT count: 41
GGC: 3822
GGC count: 1
GGA: 69,444,1514,2353,3291
GGA count: 5
GGG: 415,429,2510,5895
GGG count: 4
CAT: 138,260,295,391,453,489,556,730,733,848,918,943,972,
1005,1031,1117,1128,1159,1393,1396,1404,1471,1591,
1639,1712,1804,1828,2012,2050,2060,2106,2240,2400,
2403,2449,2592,2686,2813,2832,2946,3037,3129,3373,
3376,3390,3409,3427,3529,3532,3556,3595,3801,3924,
3927,3943,3994,4012,4050,4155,4179,4203,4281,4290,
4314,4410,4440,4486,4509,4599,4620,4740,4827,4866,
4911,5044,5047,5058,5080,5260,5304,5329,5430,5562,
5664,5671,5676,5736,5746,5757,5782,5942,6040,6048,
6195,6204,6318,6426,6480,6502,6510,6547,6651,6675,
6834,6894,6900,6948,7003
CAT count: 108
CAC: 204,227,349,372,382,385,405,456,510,540,543,559,607,
619,651,691,701,738,904,1092,1102,1234,1488,1611,1621,
1636,1767,1799,1953,2086,2094,2100,2413,2562,2894,
3013,3033,3132,3159,3282,3385,3406,3542,3568,3714,
3738,3742,3793,3912,4103,4239,4311,4449,4570,4924,
5410,5415,5536,5605,5776,5803,6017,6472,6523,6561,
6726,6866,6916,6930,7072,7219
CAC count: 71
ATT: 21,1415,1787,2027,2136,2146,2152,2224,2328,2365,2429,
2678,2740,2775,2785,2804,3022,3056,3236,3257,3320,
3401,3586,3848,4003,4047,4150,4173,4267,4295,4591,
4610,4629,4633,4953,5017,5038,5093,5141,5186,5369,
5861,5873,6068,6133,6165,6211,6233,6442,6445,6668,
6710,6827,6908,7080,7230
ATT count: 56
ATC: 208,946,1315,1334,1379,1756,1909,2179,2432,2521,2710,
2728,2766,3698,3784,3946,4958,4975,5311,5318,5382,
5392,5785,5818,5986,6113,6295,6337,6637,6964,7268
ATC count: 31
ATA: 1027,1171,2209,2488,2900,3142,3167,3562,3605,3662,
3683,3721,3754,4112,4348,5794,6574,6701,6873
ATA count: 19
CTT: 31,57,230,234,477,493,523,562,569,598,710,841,938,
1045,1144,1198,1212,1431,1485,1628,1632,1706,1874,
1984,1993,2090,2173,2220,2395,2453,2543,2589,2608,
2630,2647,2795,2889,2926,2943,3002,3072,3083,3240,
3312,3337,3341,3370,3456,3478,3622,3678,3750,3819,
3841,3908,3920,3968,4132,4176,4243,4378,4534,4539,
4544,4554,4646,4651,4698,4709,4716,4726,4774,4777,
4830,4835,4875,4927,4986,5053,5090,5133,5138,5158,
5263,5295,5446,5464,5508,5523,5546,5691,5821,5881,
5918,5959,5996,6021,6031,6056,6129,6188,6247,6279,
6292,6334,6343,6357,6369,6393,6405,6585,6616,6730,
6738,6741,6778,6911,6999,7052,7095,7113
CTT count: 121
CTC: 60,216,276,316,368,395,469,530,638,781,785,922,958,
1073,1174,1294,1447,1492,1562,1670,1702,1849,1912,
2097,2441,2491,2503,2674,2721,2734,2949,3194,3452,
3641,3729,3904,3989,4092,4216,4375,4407,4721,5062,
5356,5455,5570,5633,5695,5702,5779,5885,5937,6098,
6146,6168,6227,6374,6400,6520,6577,6602,6641,6692,
6769,6817,6970,7061,7117,7152
CTC count: 69
CTA: 14,237,353,497,578,671,726,866,978,1355,1475,1655,
1719,2004,2111,2118,2268,2615,2693,3065,3150,3279,
3348,3548,3689,3707,3884,4145,5198,5637,6288,6386,
6536,7016,7089
CTA count: 35
CTG: 362,1260,1790,2072,2421,3075,3198,3894,5231,5854
CTG count: 10
TTA: 536,575,1125,1716,1938,1961,2478,2810,2972,3329,3459,
3545,3770,3881,3938,3974,4031,4166,4187,4713,4796,
5228,5577,5765,6024,6126,6420,6513,6647,6791,7125
TTA count: 31
TTG: 1932,2293,2368,2878,3352,3438,3953,4454,5030,5206,
5218,6154
TTG count: 12
AAA: 84,998,2959,3090,3213,3303,3394,4057,4125,4747,4838,
5628,5825,6347,6591,6620
AAA count: 16
AAG: 1739,2474,2816,3430,3997,6263,6322
AAG count: 7
ATG: 1882,2285,2751,4025,7188
ATG count: 5
TTT: 34,1218,1249,1344,1422,1444,1784,1807,1846,1921,2377,
2435,2540,2626,2897,3333,3611,4363,4604,4844,4847,
5385,5592,5688,5791,5851,5989,6094,6177,6191,6758,
6991
TTT count: 32
TTC: 153,1195,1539,1699,1709,1999,2023,2103,2216,2256,2798,
2869,3777,3965,4342,4366,4705,4943,5314,5659,5945,
6107,6183,6475,6891,7046,7143,7182
TTC count: 28
CCT: 507,648,695,804,1058,1109,1906,2339,3644,4066,4190,
4345,4469,4515,4809,4878,5956,6201,6423,6527,6927
CCT count: 21
CCC: 125,279,345,378,398,408,421,436,566,716,774,852,863,
1531,2231,2249,2952,5458,5495,5667,5812,6010
CCC count: 22
CCA: 845,3246,4118,4476,4860,5298,5555
CCA count: 7
CCG: (0)
TCT: 517,1082,1376,1506,2641,2978,3053,5530,5911,5983,6411,
6568
TCT count: 12
TCC: 359,388,645,2170,3449,3790,4934,5650,6198,6605,7199
TCC count: 11
TCA: 501,626,1304,1646,1745,1896,3510,3614,4433,6744
TCA count: 10
TCG: (0)
AGT: 915,1051,1168,1268,1546,1615,1950,2114,2350,2546,2574,
3045,3474,3672,3686,3887,4044,4372,4512,4577,4733,
4816,4903,5041,5193,5332,5640,5742,6071,6544,6623,
6704,7092
AGT count: 33
AGC: (0)
ACT: 1099,1136,1625,1856,3816,4038,4076,4506,4681,5806,
5892
ACT count: 11
ACC: 632,901,1482,2714,7149
ACC count: 5
ACA: 135,1451,1553,1866,2237,2984,3834,6303,7158
ACA count: 9
ACG: 1277
ACG count: 1
TGG: 1495,3535,4978,5719
TGG count: 4
TAT: 3420,4200,5338,5427,6273,6936
TAT count: 6
TAC: 3735,6863
TAC count: 2
GTT: 981,2033,6434,6689
GTT count: 4
GTC: 688,991,1652,2860,3062,5087,6766
GTC count: 7
GTA: 54,3692,4060,4258,4757,6775
GTA count: 6
GTG: 1725,3268,4583,4999,6594,6876
GTG count: 6
TAA: 5068,5180,5248,5399,6312
TAA count: 5
TAG: 5656,5980
TAG count: 2
TGA: 1162,4324,4560,4780
TGA count: 4
29) Codon Usage Bias:
About: Human T-lymphotropic virus 1, complete genome (8507bp)
VERSION: NC_001436.1
CODONS & LOCATIONS:
GCT: 2,130,160,190,199,214,218,310,341,345,411,474,503,
510,521,606,965,1027,1041,1061,1190,1299,1313,1440,
1519,1880,1999,2017,2186,2197,2542,2646,2773,2912,
2919,3081,3145,3153,3216,3261,3274,3490,3713,3827,
3900,3907,3945,4040,4213,4238,4246,4260,4292,4360,
4400,4418,4489,4560,4641,4684,4696,4705,4708,4726,
4755,4768,4902,4905,4990,5052,5121,5327,5611,5655,
5675,5743,5754,5785,5819,5835,5932,5951,6027,6105,
6143,6181,6226,6485,6521,6530,6536,6545,6584,6638,
6659,6671,6695,6730,6768,6939,7140,7145,7392,7420,
7480,7607,7624,7962,8031,8057,8068,8074,8112,8229,
8281,8409,8439,8469,8478,8493,8497
GCT count: 121
GCC: 23,27,30,42,45,54,73,76,83,92,110,147,171,186,204,
255,306,315,322,352,362,430,454,478,491,494,507,547,
631,654,658,682,723,739,746,749,752,755,818,825,861,
877,903,930,940,993,1069,1083,1119,1140,1194,1197,
1203,1206,1211,1221,1239,1255,1265,1275,1288,1316,
1328,1356,1381,1398,1417,1449,1490,1514,1540,1565,
1583,1588,1627,1633,1640,1661,1674,1695,1795,1817,
1825,1838,1860,1922,1977,2025,2044,2064,2090,2108,
2121,2155,2158,2170,2182,2215,2229,2252,2260,2284,
2297,2319,2353,2389,2433,2450,2454,2467,2497,2532,
2573,2590,2650,2664,2677,2729,2764,2796,2935,2984,
2988,3010,3091,3107,3132,3204,3223,3242,3248,3268,
3323,3439,3481,3502,3510,3547,3554,3586,3639,3655,
3664,3689,3700,3769,3802,3814,3822,3869,3919,3991,
4024,4046,4051,4055,4083,4100,4106,4172,4204,4267,
4273,4287,4313,4318,4367,4501,4541,4584,4658,4661,
4699,4735,4775,4793,4798,4844,4872,4896,4958,4963,
4994,5012,5020,5028,5060,5101,5132,5163,5178,5193,
5207,5217,5370,5377,5387,5431,5522,5526,5618,5713,
5760,5795,5801,5810,5849,5862,5954,5970,6111,6129,
6152,6325,6332,6341,6400,6420,6441,6493,6502,6568,
6580,6593,6598,6688,6698,6747,6758,6762,6851,6914,
6950,7032,7058,7062,7076,7085,7222,7268,7363,7441,
7450,7467,7476,7487,7556,7585,7603,7631,7644,7680,
7708,7723,7728,7740,7744,7799,7830,7942,7969,8019,
8079,8129,8168,8302,8306,8309,8321,8324,8333,8352,
8355,8362,8371,8389,8426,8450,8465,8483
GCC count: 280
GCA: 6,333,374,447,540,848,884,911,953,974,977,1016,1058,
1181,1324,1368,1406,1536,1558,1759,1898,1970,2147,
2265,2293,2559,2579,2643,2661,2673,2690,2725,2748,
2820,2850,2884,3021,3078,3087,3110,3167,3195,3198,
3258,3303,3583,3606,3645,3684,3776,3788,3855,3866,
3942,3955,4002,4009,4058,4128,4283,4427,4557,4610,
4771,4950,5003,5236,5487,5502,5539,5765,5823,5906,
5942,5992,6006,6011,6203,6213,6301,6314,6380,6383,
6461,6478,6631,6755,6788,6800,6875,6888,6899,7099,
7275,7321,7324,7404,7613,7636,7704,7861,7922,8062,
8218,8222,8285
GCA count: 106
GCG: 66,356,488,537,927,969,1169,1436,1528,1619,2127,2367,
2385,2740,2945,3084,3837,3980,4133,4764,5115,5298,
5777,6244,6556,6565,6710,6720,6765,7023,7131,8179,
8258,8345
GCG count: 34
CGT: 105,229,240,414,468,733,1037,1131,1280,1347,1569,1806,
1820,1828,1960,2102,3703,3707,3846,3861,4748,4785,
5519,5542,5560,5604,5631,6221,6247,6394,6691,6751,
6794,6854,7000,7070,7396,7618,7653,7991,8038,8086,
8384
CGT count: 43
CGC: 20,743,6178,8299
CGC count: 4
CGA: 138,267,297,425,572,773,1092,1401,1876,1917,2040,2221,
2304,2379,2637,2805,3034,3288,3421,4470,4552,4576,
4984,5108,5323,5362,5428,5515,5966,6092,6146,6230,
6706,6907,7123,7166,7292,7514,7573,7699,7912,8186,
8417
CGA count: 43
CGG: 144,156,348,418,498,557,619,781,1524,1551,2036,2278,
2316,2430,2905,3567,3661,3675,3760,4404,4718,4788,
4885,5772,6526,6553,6885,6920,6985,7354,7483,7720,
7957,8048,8123,8134,8423,8435
CGG count: 38
AGA: 127,179,263,386,551,611,727,893,914,998,1007,1064,
1079,1172,1226,1283,1319,1334,1376,1427,1463,1601,
1622,1652,1658,1664,1685,1777,1810,1842,1854,1869,
1888,1987,2200,2247,2409,2484,2493,2584,2596,2760,
2948,3101,3115,3443,3450,3564,3622,3732,3915,3986,
4079,4188,4223,4230,4242,4305,4332,4413,4593,4692,
4780,4809,4815,5143,5239,5257,5416,5667,5859,5958,
5963,6019,6070,6074,6251,6781,6972,7009,7096,7104,
7188,7200,7348,7519,7735,7876,7918,7966,7999,8008,
8023,8099,8116,8406,8458
AGA count: 97
AGG: 117,134,383,671,1103,1160,1214,1261,1424,1669,1724,
1732,1894,1966,2098,2178,2322,2610,2847,2894,2967,
3141,3435,3842,4005,4089,4200,4671,4679,5173,5203,
5332,5746,5854,5874,5995,5998,6407,6723,6744,6842,
6961,7209,7552,7610,8011,8016,8051,8244,8273,8276,
8396,8413
AGG count: 53
AAT: 391,458,592,602,690,695,797,887,1146,1308,1365,1387,
1413,1509,1831,1937,2020,2118,2164,2173,2224,2326,
2356,2508,2620,2640,2687,2769,2781,2835,2853,2856,
2866,3042,3052,3068,3293,3365,3430,3877,3927,4030,
4063,4159,4309,4342,4390,4423,4486,4512,4525,4654,
5033,5111,5160,5181,5229,5246,5273,5279,5295,5357,
5448,5492,5895,5927,5938,6038,6047,6061,6089,6166,
6307,6344,6347,6365,6623,6847,6862,7225,7278,7295,
7499,7561,7564,7785,7856,7931,7948,8104,8233,8238
AAT count: 92
AAC: 100,222,525,614,639,716,870,1088,1110,1143,1153,1156,
1293,1371,1469,1498,1607,1716,1738,1772,1783,1952,
1981,2056,2081,2084,2115,2243,2329,2361,2395,2403,
2457,2478,2522,2566,2809,2814,2823,2832,2927,2970,
3126,3327,3340,3354,3361,3375,3460,3474,3477,3541,
3668,3721,3904,4017,4066,4073,4117,4233,4300,4395,
4437,4466,4516,4533,4537,4548,4616,4620,4823,4944,
5105,5373,5411,5454,5476,5642,5699,5899,5918,6116,
6160,6295,6351,6427,6447,6454,6791,6829,6894,6902,
6910,6933,7192,7237,7244,7308,7333,7370,7524,7640,
7663,7792,7886,7983,7996,8138,8190,8207,8241,8379,
8501
AAC count: 113
GAT: 421,626,2072,2105,2710,2881,3028,3534,3886,4483,4587,
4743,4801,4852,4889,5006,5092,5827,5975,6701,6784,
7299,7459,7714,7925
GAT count: 25
GAC: 141,208,302,789,956,984,1305,1454,1554,1698,1847,1901,
1906,2440,2713,2743,3037,3156,3314,3382,3601,3958,
3983,4462,4509,4596,4978,5188,5339,5461,5647,5660,
5879,6100,6122,6207,6969,7047,7115,7128,7577,7627,
7690,7928,7934,8265,8420,8487
GAC count: 48
TGT: 86,152,235,247,812,1432,1443,1477,1484,1596,1926,2014,
2050,2133,2161,2444,2550,2563,2633,2799,3007,3095,
3177,3182,3210,3278,3393,3495,3515,3531,3557,3614,
3936,4166,4179,4346,4380,4410,4970,5150,5242,5467,
5506,5510,5566,5693,5727,5734,5788,5841,5982,6055,
6175,6193,6291,6430,6508,6821,7013,7052,7091,7338,
7374,7399,7407,7456,7580,8158,8162,8365,8431
TGT count: 71
TGC: 252,4037,6518,6590,7272
TGC count: 5
CAA: 667,720,831,924,1137,1251,1331,1460,1466,1472,1711,
1866,1932,1948,2077,2211,2932,2964,3016,3061,3192,
3426,3619,3648,3658,3738,3784,4149,4219,4545,4638,
4761,4806,5095,5292,5451,5483,5557,5672,5903,5914,
5923,5935,6298,6797,6926,7019,7367,7510,7795,8165,
8202
CAA count: 52
CAG: 402,534,566,582,841,900,945,1395,1446,2257,2333,2342,
2701,2953,2997,3187,3390,3414,3580,3696,3799,3811,
3897,3966,4264,4738,4865,4917,5009,5471,5945,6023,
6137,6803,6993,7151,7265,7677,7760,7838,7975,8071,
8176
CAG count: 43
GAA: 890,937,1532,1616,3498,4226,4668,6086,6149,7979,8126
GAA count: 11
GAG: 39,61,1217,1547,2144,2290,4021,4752,4923,5118,5814,
6281,7389,8318,8340
GAG count: 15
GGT: 57,89,686,858,1095,1122,2274,2792,2958,3791,4185,4628,
4648,4832,5349,6878,7029,8336,8368
GGT count: 19
GGC: 2916,3710,4702,6727
GGC count: 4
GGA: 168,5226,5445,5807,5989,8447
GGA count: 6
GGG: 407,1727,1973,3254,6108,7043,7386,8262
GGG count: 8
CAT: 291,365,513,635,704,710,760,845,855,880,959,1050,1340,
1721,1752,1956,2095,2373,2406,2417,2420,2653,2667,
2706,2737,2788,3071,3220,3330,3334,3337,3369,3485,
3537,3626,3751,3891,3976,4095,4122,4137,4144,4296,
4497,4600,4624,4713,4828,4879,4932,4974,5057,5087,
5166,5184,5285,5344,5420,5442,5571,5601,5637,5696,
5707,5870,6210,6260,6285,6321,6360,6936,7036,7067,
7120,7232,7303,7432,7812,7834,7853,7894,7937,8107,
8145,8214
CAT count: 85
CAC: 51,196,276,318,516,579,767,793,873,989,1053,1150,1272,
1409,1611,1643,1705,1991,2002,2204,2269,2313,2462,
2470,2547,2555,2628,2861,2869,2874,3098,3162,3171,
3174,3235,3297,3348,3385,3409,3418,3573,3912,3930,
3972,3996,4014,4070,4163,4191,4519,4564,4567,4676,
4819,4937,5265,5383,5405,5533,5624,5651,5730,5740,
6169,6233,6304,6414,6514,6858,6870,6953,7073,7108,
7183,7228,7251,7312,7378,7435,7495,7549,7588,7591,
7621,7658,7669,7672,7781,7805,7824,7882,8141,8197,
8330,8475
CAC count: 95
ATT: 438,483,784,906,1098,1163,1682,1790,2337,2370,2695,
2716,3148,3282,3592,3851,4249,4270,4363,4443,4530,
4631,4634,4858,5067,5080,5124,5127,5139,5276,6001,
6041,6311,6943,7247,7538,7685,7693,7870,7986
ATT count: 40
ATC: 48,544,1076,1245,1647,1701,1786,2059,2656,3306,3343,
3378,3400,3570,3743,3834,4033,4076,4169,4207,4277,
4494,4953,5076,5423,5530,5749,6197,6444,6634,6946,
7136,7160,7747,7889,7951,8327
ATC count: 37
ATA: 371,674,1175,1296,1802,2300,2902,3610,3872,4370,4446,
4613,5199,5335,5438,5496,5548,5678,5909,6438,6923,
6988,7879,8026
ATA count: 24
CTT: 15,165,232,281,287,434,461,597,837,1023,1115,1231,
1302,1352,1766,1913,2009,2031,2167,2192,2238,2423,
2488,2538,2698,2941,2979,2992,3056,3265,3300,3357,
3454,3464,3469,3505,3523,3551,3634,3679,3757,3766,
3780,3807,4043,4194,4256,4335,4357,4432,4455,4651,
4687,4848,4861,4997,5136,5155,5308,5315,5354,5499,
5577,5580,5594,5719,6083,6125,6188,6200,6372,6470,
6539,6608,6612,6616,6650,6662,6678,6776,6825,6833,
6977,6980,7157,7177,7205,7214,7258,7288,7316,7341,
7544,7595,7649,7771,7845,7849,7904,8294,8444
CTT count: 101
CTC: 10,182,193,337,377,531,563,644,648,663,764,805,865,
920,1002,1011,1031,1047,1128,1185,1248,1361,1420,1561,
1573,1677,1689,1741,1941,2005,2138,2207,2399,2413,
2719,2733,2755,2784,2961,3001,3136,3319,3406,3576,
3595,3693,3718,3735,3795,3817,3894,3948,4111,4339,
4353,4579,4606,4841,4911,4927,5047,5212,5253,5270,
5282,5311,5391,5394,5399,5434,5551,5563,5591,5683,
5686,5791,5846,5978,6058,6133,6185,6218,6236,6241,
6265,6354,6369,6375,6388,6391,6411,6417,6498,6511,
6550,6573,6576,6603,6627,6645,6654,6681,6684,6810,
6813,6816,6837,6867,6882,7039,7169,7174,7195,7255,
7262,7282,7328,7358,7382,7412,7445,7529,7765,7768,
7820,7865,7899,8041,8120,8151,8289,8461,8472
CTC count: 133
CTA: 226,443,651,809,897,1392,1593,1872,1883,2310,2515,
2519,2535,2602,2752,2938,2975,3118,3229,3239,3309,
3772,3880,3922,3961,4373,4386,4474,4478,4504,4522,
4941,5015,5036,5072,5221,5318,5480,5583,5867,6035,
6065,6433,6475,6481,6917,6997,7079,7148,7507,7568,
7731,7757,7817,8095,8505
CTA count: 56
CTG: 97,623,934,1235,1544,1579,2287,2364,2722,2828,2924,
3213,3446,4125,5627,5782,5798,5986,6740,7082,7111,
7438,8005,8034,8082,8376
CTG count: 26
TTA: 33,259,394,569,585,699,949,1072,1106,1268,1344,1995,
2111,2345,2473,2615,2877,3013,3403,3518,3747,5044,
5250,6014,6155,7751,7908,8312
TTA count: 28
TTG: 4920,5536,6966,7005,8182
TTG count: 5
AAA: 588,1384,1494,1637,1835,2150,2348,4812,5098,5882,7915
AAA count: 11
AAG: 121,270,325,1166,2124,2281,2839,4450,4722,4835,5041,
6559,8400
AAG count: 13
ATG: 450,4182,5804
ATG count: 3
TTT: 124,243,575,981,1735,2053,2500,3560,3969,4838,4855,
5262,5288,5302,6031,6464,6467,6489,6641,6665,6713,
6806,7462,8210,8403
TTT count: 25
TTC: 69,273,464,528,1200,2234,2503,2527,2680,2842,3065,
3671,4175,4197,4731,4868,5232,5305,5722,6423,6619,
6668,6733,6771,6956,7154,7344,7423,7490,7503,7598,
7717,7788,8148,8270,8348
TTC count: 36
CCT: 36,176,211,1034,1769,1945,2141,2382,2437,2778,2899,
3129,3159,3251,3397,3883,3939,3952,4114,4253,4440,
4645,4758,4876,4882,4947,4981,4987,5025,5064,5084,
5147,5170,5196,5458,5545,5704,5710,6097,6172,6278,
6338,6458,6505,6533,6542,6675,7163,7666,7809,8173,
8194,8315,8455,8490
CCT count: 55
CCC: 80,677,736,776,800,828,851,1125,1337,1457,1501,1504,
1576,1630,1692,1744,1747,1780,1814,1851,2218,2426,
2511,2605,2683,2889,2909,3031,3226,3232,3527,3630,
3933,4328,4376,4383,4571,4590,5366,5574,5586,5621,
5663,5689,5716,5757,5892,6051,6077,6080,6256,6288,
6450,6716,6736,7180,7218,7240,7285,7351,7426,7429,
7471,7954,8044,8091,8154,8359
CCC count: 68
CCA: 713,770,1178,1487,1857,1984,2376,2447,2817,3123,3351,
3858,4899,5615,5838,6318,6329,6404,7417,7453,7945,
8065
CCA count: 22
CCG: 330,962,2576,5832
CCG count: 4
TCT: 114,368,1242,1929,5408,5464,6268,7972,8393
TCT count: 9
TCC: 284,380,560,730,1044,1604,2028,2130,2625,4027,4603,
5380,5402,5554,5737,6335,6357,6587,7541
TCC count: 19
TCA: 294,3271,3372,4086,4210,4914,5000,6397,6562
TCA count: 9
TCG: 2670,3652,7055
TCG count: 3
AGT: 917,1481,1762,1798,1909,2068,3075,3245,4664,4966,6929,
8002,8247
AGT count: 13
AGC: 471,5608
AGC count: 2
ACT: 707,2392,3025,3104,3207,3285,3831,3999,4407,4459,6044,
7026,7842
ACT count: 13
ACC: 554,1655,1708,1863,2307,3544,3642,3763,4141,4216,5598,
7088
ACC count: 12
ACA: 359,399,822,1756,4092,4893,8054
ACA count: 7
ACG: 2570,7827,8226
ACG count: 3
TGG: 1258,2087,2593,3457,3598,6119,6140,6163,6891
TGG count: 9
TAT: 2047,2481,3589,5948,7711
TAT count: 5
TAC: 1020,1891,2587,3004,3754,4350,5634,5769,7696,7802
TAC count: 10
GTT: 1963
GTT count: 1
GTC: 834,1134,2189,2802
GTC count: 4
GTA: 2599,4908,7016,7754
GTA count: 4
GTG: 3201,4103
GTG count: 2
TAA: (0)
TAG: 4280
TAG count: 1
TGA: 815,7873
TGA count: 2
30) Codon Usage Bias:
About: Lassa virus segment S, complete sequence (3402bp)
VERSION: NC_004296.1
CODONS & LOCATIONS:
GCT: 18,31,36,171,209,410,489,515,557,563,613,763,810,840,
851,866,874,962,1139,1187,1192,1207,1231,1250,1323,
1326,1379,1418,1431,1442,1759,1901,2016,2128,2247,
2329,2349,2359,2365,2383,2435,2458,2751,2818,2835,
2886,2943,3015,3146,3259
GCT count: 50
GCC: 107,203,407,454,637,1051,1088,1129,1301,1553,1617,
1762,1817,1833,1857,1929,1968,1979,2081,2189,2405,
2452,2485,2568,2618,2724,2730,2764,2893,3054,3222,
3383
GCC count: 32
GCA: 2,51,78,264,464,480,496,605,653,673,692,701,731,848,
860,870,885,1061,1146,1168,1175,1226,1234,1363,1372,
1454,1560,1589,1624,1688,1701,1715,1718,1754,1892,
2201,2320,2411,2472,2495,2573,2655,2743,2797,2821,
2830,2855,2883,2980,2994,3090,3101,3177,3232,3254,
3274,3314,3371
GCA count: 58
GCG: 74,98,317,1659,1841,2953,3399
GCG count: 7
CGT: 1105,1343,1636,1801,1822,2162,2281,3018,3228
CGT count: 9
CGC: (0)
CGA: 235,1492,1788,1962,2468,2621,2630,2646
CGA count: 8
CGG: 254,296,560,628,1428,1463,1743,1852,3395
CGG count: 9
AGA: 199,270,357,368,388,418,443,448,509,512,569,584,709,
751,757,804,897,918,957,982,1026,1042,1067,1120,1134,
1254,1277,1285,1408,1526,1531,1647,1650,1655,1666,
1751,1766,1781,1796,1910,2012,2023,2027,2048,2059,
2148,2284,2509,2541,2612,2637,2689,2740,2936,2950,
2985,2989,3095,3136,3180,3244,3267,3280,3326
AGA count: 64
AGG: 114,149,152,189,267,275,302,435,532,553,669,826,906,
951,998,1039,1081,1085,1221,1273,1485,1502,1522,1574,
1630,1726,1729,1866,1919,1950,2002,2008,2233,2669,
2845,3029,3196,3199,3355,3387
AGG count: 40
AAT: 92,118,123,141,156,245,284,311,326,336,342,400,524,
535,548,602,617,620,686,788,833,901,922,939,970,1001,
1075,1116,1151,1161,1247,1297,1466,1515,1543,1586,
1672,1693,1810,1836,1926,1942,1974,2019,2065,2139,
2240,2252,2265,2346,2379,2422,2490,2513,2563,2650,
2709,2810,2862,2879,2998,3009,3012,3068,3236,3285,
3352,3365,3380
AAT count: 69
AAC: 84,89,176,183,323,346,351,382,666,743,1013,1078,1097,
1311,1347,1425,1506,1539,1564,1675,1736,1922,2030,
2041,2055,2104,2174,2192,2341,2371,2401,2627,2699,
2785,3153,3193,3212,3216
AAC count: 38
GAT: 10,25,54,259,278,287,413,439,529,572,593,689,721,793,
878,926,1047,1109,1210,1261,1355,1376,1396,1400,1451,
1547,1568,1712,1769,1937,2115,2182,2206,2274,2337,
2624,2660,2682,2696,2903,2916,3005,3071
GAT count: 43
GAC: 136,222,227,281,305,376,392,503,631,646,661,680,706,
766,797,1142,1213,1241,1265,1435,1496,1598,1610,1697,
1814,1825,1862,1958,1998,2548,2840,2920,3074,3167,
3207
GAC count: 35
TGT: 41,70,132,331,469,656,891,909,1031,1035,1102,1481,
1633,1639,1685,1707,1722,1776,1806,1907,1946,2034,
2070,2101,2123,2131,2134,2223,2333,2356,2386,2390,
2414,2462,2526,2553,2559,2608,2673,2747,2782,2849,
2975,3002,3045,3077,3080,3087,3117,3125,3174,3239,
3330,3340
TGT count: 54
TGC: 28,3368
TGC count: 2
CAA: 111,251,314,432,506,698,770,1314,1369,2045,2166,2186,
2316,2419,2761,3376
CAA count: 16
CAG: 5,62,206,241,623,760,1156,1290,1320,1438,1601,1889,
1898,2111,2216,2257,2713,2719,2801,3033,3270
CAG count: 21
GAA: 196,292,421,598,817,856,995,1010,1094,1126,1583,1643,
2394,2907,2928,3143
GAA count: 16
GAG: 103,538,576,608,1985,2734,3098,3114,3311
GAG count: 9
GGT: 164,193,542,545,580,676,716,845,881,929,992,1179,1471,
1488,1847,1990,2051,2157,2228,2288,2306,2505,2641,
2813,2957,3024,3105,3171
GGT count: 28
GGC: (0)
GGA: 863,1294,1669,2615,3323
GGA count: 5
GGG: 566,2634,2913
GGG count: 3
CAT: 44,218,634,776,781,943,976,1330,1391,1447,1474,1534,
1621,1740,1785,1873,1882,1932,2088,2118,2144,2177,
2271,2295,2309,2352,2429,2432,2441,2446,2706,2772,
2792,2873,2889,2897,2946,3050,3060,3108,3149,3291,
3308,3345
CAT count: 44
CAC: 492,727,912,985,1334,1405,1422,1518,1627,1682,1791,
1829,1895,1916,2500,2756,2789,2807,2858,3057,3188,
3294,3333,3359
CAC count: 24
ATT: 21,397,457,1058,1200,1268,1550,1993,2195,2676,2693,
3111,3304,3337
ATT count: 14
ATC: 160,179,738,932,1308,2107,2516,2544,2576,2686,2767,
3390
ATC count: 12
ATA: 362,474,888,1016,1054,1499,2091,2299,3064
ATA count: 9
CTT: 67,127,144,212,403,500,747,754,813,965,1005,1238,1339,
1414,1511,1878,1965,2073,2097,2244,2292,2374,2531,
2537,2605,2663,2865,2970,3084,3158,3248,3299,3317
CTT count: 33
CTC: 232,385,518,915,935,1019,1072,1203,1217,1304,1387,
1457,1556,2085,2094,2212,3120
CTC count: 17
CTA: 14,308,485,724,785,1350,2581,2584,3038,3184
CTA count: 10
CTG: 95,365,521,650,1112,1258,1281,1594,1733,2038,2522
CTG count: 11
TTA: 215,425,829,837,947,1182,1358,1613,2312,2324,2477,
2939,3128,3349
TTA count: 14
TTG: 48,299,372,589,683,713,1748,1954,2679,2933,3362
TTG count: 11
AAA: 354,807,2151,2775,3202
AAA count: 5
AAG: 428,451,460,640,734,1382,1577,2923,3219
AAG count: 9
ATG: 1772,2171,2261,3277
ATG count: 4
TTT: 2449
TTT count: 1
TTC: 979,1885,2368,2481,3132
TTC count: 5
CCT: 989,1165,1197,1411,1679,2078,2426,3320
CCT count: 8
CCC: 1460,2062,2519,2666,2825,2869
CCC count: 6
CCA: 801,1244,2556
CCA count: 3
CCG: (0)
TCT: 59,379,643,1870,2438,3140
TCT count: 6
TCC: 1571,2268,2278,2465,2716,3042
TCC count: 6
TCA: 954,1064,1704,2362,2398,2408,2737,3251
TCA count: 8
TCG: 1172
TCG count: 1
AGT: 238,773,2220,2302,2601,2703,2778,3262
AGT count: 8
AGC: (0)
ACT: 168,2852,2900
ACT count: 3
ACC: 1478,2237
ACC count: 2
ACA: 1023,2455,3225
ACA count: 3
ACG: 2727
ACG count: 1
TGG: 477,894,1091,1123,2198
TGG count: 5
TAT: 1580,1982
TAT count: 2
TAC: 81,186,1971,2534,2804
TAC count: 5
GTT: 248,973,1317,1366,1904,2209,2910,2967,3021,3288
GTT count: 10
GTC: 320,1913
GTC count: 2
GTA: 695,1662
GTA count: 2
GTG: 1844,2154
GTG count: 2
TAA: 339,2876
TAA count: 2
TAG: (0)
TGA: 2005
TGA count: 1
31) Codon Usage Bias:
About: Influenza A virus (A/Puerto Rico/8/1934(H1N1)) segment 4, complete sequence (1778bp)
VERSION: NC_002017.1
CODONS & LOCATIONS:
GCT: 72,100,140,179,263,293,383,400,445,490,527,533,550,
563,672,753,782,843,862,1162,1257,1658
GCT count: 22
GCC: 190,225,255,452,991,1011,1077,1083,1194,1435,1452,
1644
GCC count: 12
GCA: 2,8,39,63,69,75,81,392,483,486,508,726,813,831,849,
874,891,899,946,1167,1183,1350,1507,1677,1712,1717,
1726
GCA count: 27
GCG: 108,283,498,1170,1626
GCG count: 5
CGT: 628,1001,1048
CGT count: 3
CGC: (0)
CGA: 122,143,182,371,416,425,913,1232
CGA count: 8
CGG: 197,538,718,791,1130,1202,1463
CGG count: 7
AGA: 148,185,210,278,303,323,340,362,420,440,519,541,586,
596,649,661,708,732,744,794,858,961,986,1062,1118,
1144,1268,1283,1411,1423,1444,1457,1521,1553,1556,
1583,1618,1733,1738,1746
AGA count: 40
AGG: 218,359,379,387,473,544,547,590,640,705,759,837,983,
1005,1020,1031,1038,1097,1153,1216,1290,1380,1572,
1579,1755
AGG count: 25
AAT: 17,32,89,114,221,235,244,347,522,570,669,696,722,800,
816,822,827,896,980,997,1015,1057,1112,1191,1238,1249,
1279,1299,1305,1347,1354,1374,1404,1438,1449,1460,
1467,1500,1504,1524,1546,1594,1600,1604,1701,1721,
1749
AAT count: 47
AAC: 23,26,42,111,119,174,202,249,273,326,333,456,462,467,
479,582,633,646,702,765,787,888,909,923,1041,1150,
1212,1221,1242,1275,1569,1637,1761
AAC count: 33
GAT: 78,259,747,1102,1115,1123,1156,1173,1205,1317,1320,
1324,1389,1471,1536,1610,1691,1705
GAT count: 18
GAC: 84,132,155,161,689,776,1106,1332,1340,1398,1497,1529
GAC count: 12
TGT: 55,60,93,128,152,170,207,320,351,406,578,605,610,677,
683,906,918,1226,1357,1417,1494,1517,1640,1695,1769
TGT count: 25
TGC: (0)
CAA: 29,194,437,470,559,737,750,994,1176,1188,1490,1561
CAA count: 12
CAG: 136,298,403,973,1159,1682
CAG count: 6
GAA: 14,35,503,566,593,666,729,1235,1296,1371,1377,1512,
1575
GAA count: 13
GAG: 810,854,903,934,1479,1588
GAG count: 6
GGT: 50,310,615,868,1025,1065,1086,1126,1263,1655,1664
GGT count: 11
GGC: (0)
GGA: 241,270,819,1074
GGA count: 4
GGG: 11,756,1607,1673
GGG count: 4
CAT: 105,307,317,368,409,412,448,495,553,621,878,1052,1137,
1140,1395
CAT count: 15
CAC: 125,165,229,289,459,624,797,881,969,977,1253,1651
CAC count: 12
ATT: 395,618,769,1044,1070,1080,1092,1197,1245,1271,1335,
1549,1741
ATT count: 13
ATC: 252,355,643,654,658,1414,1540,1615,1629
ATC count: 9
ATA: 96,964,1343
ATA count: 3
CTT: 66,266,574,779,955,1708
CTT count: 6
CTC: 680,884,951,1384,1634,1667
CTC count: 6
CTA: 45,314,374,1035,1365,1484,1774
CTA count: 7
CTG: 337,773,930,1329,1368,1623,1688,1730
CTG count: 8
TTA: 213,515,712,1133,1302,1532
TTA count: 6
TTG: 865,1566
TTG count: 2
AAA: 5,20,1179,1286,1308,1311,1430,1758
AAA count: 8
AAG: 1426
AAG count: 1
ATG: 343,530,762,1147,1293,1420,1752
ATG count: 7
TTT: 365,512,1089,1475,1661,1685
TTT count: 6
TTC: 692,846,1392
TTC count: 3
CCT: 602,1670,1766
CCT count: 3
CCC: 715,927
CCC count: 2
CCA: 330,834,1487,1543
CCA count: 4
CCG: 871
CCG count: 1
TCT: 1698
TCT count: 1
TCC: 958
TCC count: 1
TCA: 1401
TCA count: 1
TCG: (0)
AGT: 158,476,599,636,686,740,1008,1361,1647
AGT count: 9
AGC: (0)
ACT: (0)
ACC: 286,556
ACC count: 2
ACA: 1209
ACA count: 1
ACG: (0)
TGG: 238,1109,1597
TGG count: 3
TAT: 699,840,1229
TAT count: 3
TAC: 232,1028
TAC count: 2
GTT: 1314
GTT count: 1
GTC: (0)
GTA: (0)
GTG: 1260,1407
GTG count: 2
TAA: 1441
TAA count: 1
TAG: (0)
TGA: 1591
TGA count: 1
32) Codon Usage Bias:
About: Influenza B virus RNA 1, complete sequence (2368bp)
VERSION: NC_002204.1
CODONS & LOCATIONS:
GCT: 13,130,291,435,597,711,750,795,879,887,955,978,1065,
1116,1193,1265,1359,1430,1560,1674,1751,2080,2085,
2109,2113,2159,2166,2250,2280,2354
GCT count: 30
GCC: 233,261,348,492,512,520,593,744,858,1006,1235,1287,
1636,1656,1699,1802,1966,2146,2172
GCC count: 19
GCA: 2,66,69,267,333,357,438,444,681,721,738,821,873,1038,
1179,1224,1290,1340,1374,1450,1498,1533,1578,1587,
1641,1647,1791,1829,1892,1944,1959,2095,2150,2155,
2193,2244,2329
GCA count: 37
GCG: 8,1992,2124,2324
GCG count: 4
CGT: 146,836,2312,2357
CGT count: 4
CGC: (0)
CGA: 161,242,256,848,1133,1409,1419,1988,2196,2237
CGA count: 10
CGG: 95,121,415,1020,1042,1348,1884,2284
CGG count: 8
AGA: 19,50,140,153,218,245,300,311,343,396,400,423,524,
542,574,606,627,647,651,660,678,707,717,732,735,765,
818,853,932,966,990,999,1068,1107,1154,1158,1169,1214,
1319,1379,1385,1456,1509,1609,1683,1709,1729,1773,
1821,1838,1940,1975,2016,2031,2053,2178,2184,2228,
2263
AGA count: 59
AGG: 175,203,320,391,471,499,610,640,839,905,908,929,1079,
1176,1217,1238,1280,1295,1400,1592,1704,1724,1769,
1880,1913,1930,2025,2071,2133,2213,2217
AGG count: 31
AAT: 137,184,212,228,249,271,362,382,458,477,486,554,589,
667,698,761,801,813,870,884,894,936,943,948,952,960,
1010,1056,1061,1121,1143,1164,1209,1241,1253,1260,
1371,1403,1439,1470,1489,1527,1569,1573,1595,1601,
1604,1614,1626,1663,1696,1733,1739,1806,1815,1841,
1844,1852,1862,1902,1970,1979,2077,2288,2317,2334,
2343
AAT count: 67
AAC: 77,80,125,171,181,224,253,371,426,430,450,455,461,
547,603,656,693,724,789,862,995,1091,1100,1172,1183,
1198,1220,1305,1314,1443,1475,1540,1623,1652,1761,
1824,1857,1952,2003,2028,2043,2058,2074,2118,2137
AAC count: 45
GAT: 149,195,276,297,306,408,480,505,534,557,755,769,911,
1023,1088,1244,1247,1298,1332,1353,1481,1512,1516,
1619,1631,1776,1794,1947,2049,2063,2190,2232,2337
GAT count: 33
GAC: 378,386,495,701,920,926,983,1002,1336,1388,1581,1598,
1677,1866,1983,2202
GAC count: 16
TGT: 53,98,207,279,325,418,773,807,897,923,1029,1048,1128,
1138,1363,1367,1392,1425,1467,1501,1520,1910,1921,
2091,2221,2275
TGT count: 26
TGC: (0)
CAA: 330,674,1715,1877,1899,1937,2021,2224
CAA count: 8
CAG: 63,568,890,914,1273,2140
CAG count: 6
GAA: 5,23,118,178,584,714,786,810,844,987,1075,1187,1736,
1758,2163,2346
GAA count: 16
GAG: 288,354,1555,1564,1872,2106,2208
GAG count: 7
GGT: 215,337,365,828,1015,1779,1797,2259,2269,2299,2306
GGT count: 11
GGC: (0)
GGA: 412,489,1311,1397,1721,1748
GGA count: 6
GGG: 1250,1436
GGG count: 2
CAT: 47,88,114,188,315,530,538,671,688,1085,1150,1549,1670,
1917,1962,2007,2128,2309,2321
CAT count: 19
CAC: 92,134,143,157,340,368,901,1688,2175,2253
CAC count: 10
ATT: 72,83,109,236,741,776,1277,1308,1433,1667,1784,1833,
1847,1926,2303
ATT count: 15
ATC: 804,866,969,1268,1523,1997
ATC count: 6
ATA: 60,630,1035,1146,1322,1659,2037
ATA count: 7
CTT: 42,106,404,466,515,563,1201,1205,1230,1325,1345,1546,
1809,1907,2067,2100,2256
CTT count: 17
CTC: 167,1052
CTC count: 2
CTA: 634,940,1110,1691,1765,2040,2293,2364
CTA count: 8
CTG: 285,447,550,2199
CTG count: 4
TTA: 16,199,483,684,831,1415,1463,1492,1505,1887,2181
TTA count: 11
TTG: 294,474,792,975,1071,1486,1552,1818,2012,2266
TTG count: 10
AAA: 600,644,728,798,1103,1113,1190,1301,1406,1453,1459,
2240,2349
AAA count: 13
AAG: 824,1094,2088
AAG count: 3
ATG: 303,351,1328,1446,1536,1584,1754,2169,2187,2247
ATG count: 10
TTT: 560,614,972,1026,1257,1356,1412,1530,2103,2361
TTT count: 10
TTC: 191,1712
TTC count: 2
CCT: 57,617,1125,1869,1896,1956
CCT count: 6
CCC: 102
CCC count: 1
CCA: 963,1495
CCA count: 2
CCG: (0)
TCT: 1045,1227,2034
TCT count: 3
TCC: 32,221,1543
TCC count: 3
TCA: (0)
TCG: (0)
AGT: 374,509,779,782,1032,1283,1718,1787,2121
AGT count: 9
AGC: (0)
ACT: 2046
ACT count: 1
ACC: 239,747
ACC count: 2
ACA: 758,1422,2272
ACA count: 3
ACG: 441,1644
ACG count: 2
TGG: 664,1478,2000,2296
TGG count: 4
TAT: 264,527,917,1161,1680,1934,2205
TAT count: 7
TAC: 1812
TAC count: 1
GTT: 282,1082
GTT count: 2
GTC: (0)
GTA: 164
GTA count: 1
GTG: 502,876
GTG count: 2
TAA: 571,704,1097,2340
TAA count: 4
TAG: 2143
TAG count: 1
TGA: 637,1382
TGA count: 2
33) Codon Usage Bias:
About: Influenza C virus (C/Ann Arbor/1/50) M1, CM2 genes for matrix protein, CM2 protein, complete cds (1180bp)
VERSION: NC_006312.2
CODONS & LOCATIONS:
GCT: 47,77,143,216,259,326,461,530,581,794,800,886,973,
1088,1172,1178
GCT count: 16
GCC: 128,188,368,557,594,641,896,1021,1052
GCC count: 9
GCA: 2,8,29,59,95,107,132,140,199,248,269,313,323,474,561,
566,608,698,717,743,804,978
GCA count: 22
GCG: 252,845
GCG count: 2
CGT: 205
CGT count: 1
CGC: (0)
CGA: 424,443,574,737,1035,1096,1102
CGA count: 7
CGG: (0)
AGA: 55,84,156,184,292,299,308,331,374,403,421,436,470,
483,494,514,524,551,601,604,623,631,680,727,813,987,
1000,1045,1065,1081
AGA count: 30
AGG: 89,115,118,212,295,365,448,500,706,877,910,1061
AGG count: 12
AAT: 25,37,71,100,123,135,175,196,229,263,288,316,352,361,
385,388,394,454,506,538,653,671,676,750,766,836,866,
916,943,949,962,1015,1027,1114,1127,1144,1149,1163
AAT count: 38
AAC: 22,52,112,147,162,234,451,479,628,781,789,825,833,
850,872,889,954,1099,1106
AAC count: 19
GAT: 14,43,151,355,377,413,577,730,842,906,913,981,990,
1085,1130
GAT count: 15
GAC: 302,380,1009,1031,1068,1073
GAC count: 6
TGT: 650,760,770,818,853,860,924,927,958,970,995
TGT count: 11
TGC: (0)
CAA: 19,620
CAA count: 2
CAG: (0)
GAA: 5,241,283,319,358,491,545,571,666,692,713,869,1040,
1158
GAA count: 14
GAG: 342,347,720
GAG count: 3
GGT: 397,465,584,753,965,1133
GGT count: 6
GGC: (0)
GGA: 391,521,734
GGA count: 3
GGG: 11,984,1078
GGG count: 3
CAT: 32,202,237,256,439,542,857,883,946
CAT count: 9
CAC: 193,416,430,457,656,686,1012,1110
CAC count: 8
ATT: 587,646,829,892,930,934,1049,1136
ATT count: 8
ATC: 165,222,807
ATC count: 3
ATA: 305,409,701,880
ATA count: 4
CTT: 273,334,337,660,900,1055,1119,1155,1169
CTT count: 9
CTC: 511,775
CTC count: 2
CTA: 65,276,427,821,921
CTA count: 5
CTG: 81,180,225,591,1092
CTG count: 5
TTA: 533
TTA count: 1
TTG: 597,638,663,689,723,1140
TTG count: 6
AAA: 68,244,266,486,554,695,940
AAA count: 7
AAG: 517,634,784
AAG count: 3
ATG: 159,209,740,746
ATG count: 4
TTT: 62,280,863,1122
TTT count: 4
TTC: 103,168,371
TTC count: 3
CCT: 172
CCT count: 1
CCC: 683,1166
CCC count: 2
CCA: (0)
CCG: (0)
TCT: 797,1058
TCT count: 2
TCC: (0)
TCA: (0)
TCG: (0)
AGT: 406,503,709,757,937
AGT count: 5
AGC: (0)
ACT: 40,839,1175
ACT count: 3
ACC: 433
ACC count: 1
ACA: 92,527
ACA count: 2
ACG: (0)
TGG: 903
TGG count: 1
TAT: 219,763,778,1018
TAT count: 4
TAC: 497,1152
TAC count: 2
GTT: 74
GTT count: 1
GTC: (0)
GTA: 548
GTA count: 1
GTG: (0)
TAA: 810
TAA count: 1
TAG: (0)
TGA: 400,1024
TGA count: 2
34) Codon Usage Bias:
About: Influenza A virus (A/Puerto Rico/8/1934(H1N1)) segment 7, complete sequence (1027bp)
VERSION: NC_002016.1
CODONS & LOCATIONS:
GCT: 160,220,258,331,386,434,488,581,587,602,641,650,696,
704,792,874,960,969
GCT count: 18
GCC: 78,89,229,272,359,398,411,459,569,629,740,798,899,
917
GCC count: 14
GCA: 8,98,122,247,311,392,452,470,499,514,573,595,616,620,
623,655,664,736,763,769,801,821,862,953
GCA count: 24
GCG: 2,238,250,668
GCG count: 4
CGT: 51,55,72,226,846,870
CGT count: 6
CGC: (0)
CGA: 40,46,136,609,752,942,974
CGA count: 7
CGG: 286,503,773,884,907
CGG count: 5
AGA: 14,24,93,102,112,129,165,170,254,336,342,364,483,545,
552,557,674,747,935
AGA count: 19
AGG: 144,195,205,241,326,425,636,893,896,911,930,946
AGG count: 12
AAT: 156,175,269,278,296,367,517,541,598,658,716,731,804,
859,880
AAT count: 15
AAC: 37,299,318,346,422,480,526,529,533,949,1010
AAC count: 11
GAT: 199,290,606,719,766,783,815,827,836,843,966
GAT count: 11
GAC: 105,190,305,439,491,523,685
GAC count: 7
TGT: 115,180,211,262,321,404,467,476,832,986,1018
TGT count: 11
TGC: (0)
CAA: 85,266,778
CAA count: 3
CAG: 75,232,376,647,700,989
CAG count: 6
GAA: 21,283,446,712,728,890
GAA count: 6
GAG: 28,626,956,1002
GAG count: 4
GGT: 11,43,389,463,520,562,661,707,760,978
GGT count: 10
GGC: (0)
GGA: 126,592
GGA count: 2
GGG: 339,356,430,757
GGG count: 4
CAT: 67,151,353,415,509,548,679,689,809,981
CAT count: 10
CAC: 133,183,217,223,372,442,537
CAC count: 7
ATT: 18,208,349,381,795
ATT count: 5
ATC: 744
ATC count: 1
ATA: 418,938
ATA count: 2
CTT: 32,118,140,275,395,722,725,818,824,840,849
CTT count: 11
CTC: 59,186,787
CTC count: 3
CTA: 63,576,693,904,925,1023
CTA count: 6
CTG: 999
CTG count: 1
TTA: 315,566,866,877
TTA count: 4
TTG: 108,456
TTG count: 2
AAA: 5,308,920,1006
AAA count: 4
AAG: 584
AAG count: 1
ATG: 302,407,632,671
ATG count: 4
TTT: 202,852
TTT count: 2
TTC: 147,855
TTC count: 2
CCT: 82,1015
CCT count: 2
CCC: 495
CCC count: 1
CCA: 293
CCA count: 1
CCG: (0)
TCT: 506
TCT count: 1
TCC: (0)
TCA: (0)
TCG: (0)
AGT: 401,644,914
AGT count: 3
AGC: (0)
ACT: 244,887
ACT count: 2
ACC: 473
ACC count: 1
ACA: (0)
ACG: (0)
TGG: 682,812
TGG count: 2
TAT: (0)
TAC: (0)
GTT: 214
GTT count: 1
GTC: (0)
GTA: (0)
GTG: 449,612,963
GTG count: 3
TAA: (0)
TAG: (0)
TGA: 235
TGA count: 1
35) Codon Usage Bias:
About: Norovirus GI, complete genome (7654bp)
VERSION: NC_001959.2
CODONS & LOCATIONS:
GCT: 38,41,56,116,161,169,319,359,381,461,493,532,626,716,
757,825,852,880,982,1036,1054,1169,1251,1301,1330,
1468,1496,1586,1610,1616,1631,1637,1724,1768,1825,
1955,1976,2115,2153,2166,2230,2243,2321,2389,2426,
2531,2594,2600,2612,2665,2765,2774,3305,3354,3552,
3592,3611,3640,3776,3812,3821,4097,4163,4261,4274,
4304,4436,4532,4541,4681,4735,5069,5183,5292,5301,
5379,5400,5409,5436,5493,5636,5693,5697,5805,5912,
6478,6508,6645,6693,6723,6731,6819,6823,6839,6916,
6932,6977,6980,6998,7124,7142,7178,7196,7223,7268,
7283,7305,7469
GCT count: 108
GCC: 190,197,251,374,441,511,528,574,677,706,799,806,840,
894,986,1012,1180,1200,1214,1228,1256,1344,1505,1556,
1625,1684,1731,1736,1750,1880,1886,1895,1983,1988,
2014,2022,2122,2212,2249,2290,2339,2345,2372,2501,
2564,2573,2630,2714,2785,2820,2879,2955,3048,3223,
3241,3324,3366,3400,3430,3498,3534,3596,3617,3651,
3677,3782,3869,3873,3900,3952,3970,4011,4068,4075,
4081,4086,4149,4169,4173,4283,4334,4357,4403,4427,
4430,4443,4483,4518,4635,4643,4658,4670,4738,4814,
4910,4914,4941,4957,5082,5104,5137,5282,5344,5544,
5706,5837,5899,5983,6044,6065,6093,6178,6181,6219,
6298,6303,6364,6373,6573,6632,6656,6705,6726,6842,
6899,6912,6943,6953,6959,7034,7044,7331,7508,7531,
7561
GCC count: 135
GCA: 45,483,555,566,610,645,674,809,871,954,977,1322,1424,
1490,1532,1619,1650,1709,1712,1784,1876,1939,2049,
2054,2102,2382,2394,2454,2467,2527,2545,2548,2591,
2606,2711,2720,2751,2904,2928,2945,3015,3071,3083,
3099,3172,3257,3446,3458,3683,3702,3725,3779,3795,
3839,3862,3905,3974,3987,4071,4242,4270,4277,4331,
4497,4537,4565,4577,4685,4773,4802,4840,5022,5042,
5055,5223,5278,5451,5466,5481,5540,5737,5775,5781,
5908,5929,5964,6032,6118,6146,6190,6244,6274,6341,
6438,6445,6451,6561,6780,6921,6971,6989,7011,7066,
7072,7154,7202,7205,7217,7236,7339,7571,7609
GCA count: 112
GCG: 14,92,271,724,1009,1319,1657,2324,2654,2681,2689,3178,
3720,3742,3831,4055,4065,4100,4387,5017,5039,5100,
5334,5367,5389,5487,5715,5969,7007,7026,7031,7254,
7463,7582
GCG count: 34
CGT: 25,28,83,120,205,309,1051,1083,1096,1225,1316,1471,
1567,2190,2295,2668,2705,2921,3125,3218,3602,3733,
3802,3998,4034,4152,4252,5033,5353,6090,6502,7175,
7535
CGT count: 33
CGC: 4456,4632
CGC count: 2
CGA: 135,208,498,558,595,690,766,816,829,909,926,1204,1834,
1919,2073,2125,2256,2331,2342,2582,2678,3053,3312,
3369,3877,5073,5347,5476,7273,7400,7417,7434
CGA count: 32
CGG: 242,416,490,501,651,1333,1381,1493,1598,1778,1810,
2011,2350,3569,3576,3745,3958,4200,4264,4411,4433,
5314,5425,5585,6025,6162,6326,6556,6599,6755,6759,
6826,7300,7498
CGG count: 34
AGA: 22,95,141,154,225,233,282,292,297,306,342,429,475,
648,753,778,784,859,916,937,949,961,1021,1101,1120,
1183,1271,1287,1296,1348,1368,1396,1411,1432,1513,
1522,1525,1743,1813,1851,1861,1924,2110,2262,2315,
2421,2488,2494,2518,2521,2725,2740,2809,2836,2844,
2887,2895,2907,2974,2983,2994,2999,3004,3009,3031,
3064,3106,3150,3156,3169,3205,3212,3246,3269,3291,
3415,3489,3526,3715,3826,3844,3853,3943,4005,4107,
4126,4131,4224,4258,4299,4342,4360,4365,4383,4510,
4513,4551,4598,4612,4651,4675,4695,4729,4878,4897,
4969,5062,5116,5125,5150,5199,5210,5214,5244,5329,
5679,5722,5822,5846,5880,6128,6139,6223,6228,6320,
6376,6392,6529,6602,6674,6882,6924,7075,7160,7208,
7243,7259,7295,7552
AGA count: 139
AGG: 102,109,180,385,447,464,469,551,607,637,843,875,971,
1197,1217,1261,1278,1475,1535,1550,1613,1696,1761,
1857,1932,2027,2161,2179,2199,2268,2286,2413,2434,
2474,2597,2728,2769,2781,2791,2813,2841,2850,2890,
2916,3042,3060,3075,3103,3131,3273,3346,3479,3511,
3529,3541,3626,3633,3658,3673,3687,3712,3847,3858,
3887,3932,3990,4026,4220,4424,4662,4705,4721,4764,
4932,4972,4988,5066,5176,5226,5272,5326,5374,5428,
5552,5685,5814,5833,5853,6295,6635,6716,7017,7049,
7097,7116,7347,7556,7628,7638
AGG count: 99
AAT: 4,53,65,266,521,580,685,788,1132,1231,1338,1351,1517,
1539,1553,1583,1606,1642,1739,1843,1868,1910,1936,
1973,2143,2183,2236,2451,2463,2512,2554,2650,2675,
2747,2857,2863,2933,2942,3115,3121,3252,3284,3296,
3474,3493,3562,3654,3680,3749,3924,4135,4176,4238,
4289,4479,4486,4507,4545,4595,4603,4778,4789,4924,
4935,4978,4994,5086,5108,5155,5202,5239,5260,5357,
5433,5505,5525,5529,5532,5557,5574,5577,5625,5651,
5658,5703,5726,5763,5856,5871,5874,5883,6000,6060,
6104,6132,6156,6240,6251,6265,6348,6431,6441,6459,
6537,6629,6651,6762,6772,6813,6849,6892,6949,6964,
7061,7079,7102,7130,7134,7148,7250,7353,7370,7376,
7445,7475,7547,7574,7577,7595,7602,7624,7634,7644
AAT count: 133
AAC: 59,62,131,145,149,219,222,261,331,336,339,354,744,
750,771,792,821,945,1041,1058,1070,1142,1160,1393,
1402,1482,1702,1716,1728,1872,1903,1928,2006,2067,
2098,2174,2225,2280,2558,2635,2830,2936,3109,3159,
3165,3183,3385,3403,3582,3835,3913,3919,4023,4041,
4047,4114,4189,4286,4308,4317,4347,4414,4502,4588,
4769,4888,4947,4951,4966,5079,5673,5887,5891,6038,
6084,6255,6700,6835,6908,7056,7089,7344,7427,7504
AAC count: 84
GAT: 7,10,172,230,314,350,371,434,592,694,964,974,1076,
1151,1220,1246,1291,1307,1388,1654,1675,1790,1799,
1803,1822,1952,2171,2206,2306,2335,2658,2798,2876,
2969,3092,3201,3260,3263,3278,3342,3572,3661,3691,
3695,3880,4139,4166,4229,4232,4406,4562,4568,4700,
4709,4746,4786,4832,4871,4874,5000,5036,5164,5253,
5296,5360,5363,5394,5457,5514,5522,5589,5601,5801,
5808,5877,5949,5994,6174,6270,6336,6387,6482,6750,
6789,6845,6946,7105,7199,7437,7587,7649
GAT count: 91
GAC: 177,277,285,323,545,587,929,1208,1274,1311,1462,1478,
1559,1645,1846,1889,1916,1997,2033,2093,2265,2300,
2312,2536,2551,2801,3196,3230,3235,3266,3503,3508,
3544,3670,3752,4037,4058,4184,4583,4609,4892,4904,
4961,5004,5095,5128,5309,5323,5442,5497,5978,6233,
6353,6405,6519,6744,7094,7189,7489
GAC count: 59
TGT: 211,247,301,472,504,525,658,731,736,836,849,1005,1073,
1546,1663,1679,1865,1913,1945,2002,2017,2041,2203,
2398,2478,2506,2618,2694,2825,3375,3394,3409,3643,
3760,3764,3883,3909,4111,4122,4293,4451,4471,4629,
4666,4714,4754,4799,4806,4848,4882,5266,5286,5319,
5462,5537,5596,5798,5849,5903,5957,6007,6079,6143,
6165,6208,6215,6248,6333,6413,6464,6470,6581,6622,
6660,6713,6740,6804,6860,6866,6877,6902,7213,7240,
7263,7311,7482,7521,7528,7592
TGT count: 89
TGC: 2662,3809,5896,6940
TGC count: 4
CAA: 18,390,548,641,671,747,775,1634,1705,2119,2448,2515,
2524,2587,2686,2871,2899,2911,2989,3333,3455,3486,
3739,3786,4146,4354,4373,4592,4726,4982,5051,5147,
5386,5778,6153,6513,6547,6625,6776,6956,7040,7424
CAA count: 42
CAG: 186,540,1458,1992,2083,2240,2624,3080,3372,3555,3792,
3818,5159,5415,5987,6041,6107,6199,6357,6381,6435,
7192,7227,7314,7479
CAG count: 25
GAA: 50,254,413,437,1048,1399,1439,1817,2060,2077,2107,
2209,2737,2778,3287,3302,3412,3894,5180,6035,7121
GAA count: 21
GAG: 362,515,1418,1781,2147,2273,2965,3327,3464,3768,4094,
4811,5606,6071,6720,7466
GAG count: 16
GGT: 366,377,456,584,720,867,897,921,967,999,1031,1093,
1105,1108,1385,1666,1691,1754,1757,1771,2195,2357,
2498,2699,2755,2806,2866,2924,2960,3086,3089,3095,
3188,3361,3425,3461,3517,3757,3805,4155,4203,4420,
4820,4837,4868,5008,5046,5058,5195,5249,5412,5420,
5469,5613,5661,5666,5670,5700,5748,5754,5934,5937,
5940,5946,6159,6185,6313,6330,6426,6456,6544,6594,
6605,6611,6642,6792,6854,6927,6936,6968,6992,7022,
7110,7184,7361,7414,7485,7538
GGT count: 88
GGC: 4400,5397,5406
GGC count: 3
GGA: 856,1080,1831,3118,3321,5257,5719,5843,6029,6526,7004,
7220,7442
GGA count: 13
GGG: 113,166,655,1090,1240,1243,2090,3351,3607,3982,4732,
6768,6816,6874,6905,7181
GGG count: 16
CAT: 201,410,425,613,620,634,700,709,762,795,883,1087,1190,
1359,1449,1455,1591,1669,1793,1963,2135,2221,2362,
2368,2482,2641,2744,2759,2788,2795,3208,3226,3379,
3622,3647,3729,4014,4214,4321,4446,4474,4525,4556,
4624,4689,4717,4860,5026,5111,5121,5192,5230,5234,
5306,5383,5619,5640,5760,5828,5868,6205,6308,6420,
6493,6567,6680,6687,6871,7290,7321,7326,7356,7389,
7393,7431,7455,7613,7619
CAT count: 78
CAC: 126,237,288,326,396,403,421,537,561,577,662,697,741,
905,1146,1173,1267,1563,1966,1969,2215,2218,2401,2404,
2568,2578,3128,3315,3382,3388,3452,3469,3773,3799,
3948,4211,4246,4280,4327,4467,4647,4781,4827,4918,
5141,5169,5187,5647,5794,5918,6050,6194,6211,6277,
6285,6395,6398,6496,6670,6735,6800,6832,6985,7167,
7231,7405,7460,7494,7518
CAC count: 69
ATT: 74,88,598,781,832,940,1015,1237,1264,1354,1415,1942,
2046,2408,2416,2672,3018,3067,3418,3614,4654,5350,
5511,5565,5688,6068,6367,6552,6608,6665,6974,7138,
7164,7364,7380,7542,7564,7567,7616
ATT count: 39
ATC: 487,712,1508,1543,1573,1594,1601,1719,1806,2365,2431,
2491,3436,3449,4117,4615,4741,4843,5337,6345,6889,
7053,7113
ATC count: 23
ATA: 629,1166,1500,1883,1958,2444,2459,2977,3021,3026,3034,
3443,3629,3707,3964,4311,4548,4572,5772,6584
ATA count: 20
CTT: 347,479,864,1025,1045,1064,1115,1126,1135,1211,1375,
1378,3037,3136,3421,3521,3587,3698,4051,4158,4181,
4249,4618,4758,5011,5014,5089,5448,5473,5622,5629,
5633,5766,5789,5864,5953,6047,6258,6281,6289,6409,
6423,6474,6522,6577,6614,6690,6765,6857,6863,7083,
7386,7448,7512,7524
CTT count: 55
CTC: 98,682,886,889,933,1112,1576,1907,2131,2541,2950,3937,
4621,4794,4928,5785,5818,5925,6019,6054,6076,6097,
6169,6236,7037,7172,7279,7452,7472
CTC count: 29
CTA: 33,216,601,616,1193,1364,1406,1445,1452,1837,2138,
2378,2645,3191,4019,4031,4194,4391,4394,4528,5132,
5371,5643,6022,6370,6570,6709,7335,7515
CTA count: 29
CTG: 507,570,1028,1980,2733,3537,3928,4091,4692,5092,5519,
6262,6505,7001
CTG count: 14
TTA: 901,1061,1428,3665,3865,4324,4337,4369,4638,4823,4864,
5206,5560,5710,5974,6012,7086
TTA count: 17
TTG: 274,1138,1622,1764,2064,2150,2252,2354,2817,3339,3358,
4104,4440,4494,5076,5610,6292,6361,6448,7151,7246,
7411
TTG count: 22
AAA: 193,451,1528,2385,3215,3566,4217,4376,4489,4991,6896,
7145
AAA count: 12
AAG: 77,1282,1628,2762,4954,5500
AAG count: 6
ATG: 158,1341,1436,2717,3012,3057,3249,3891,4008,4296,4938,
5275,5454,5676,6114,6541,7598
ATG count: 17
TTT: 1155,1163,1186,2128,2303,3299,4559,4678,4900,5217,
5593,5731,5751,5840,5997,6121,6202,6617,6885,7631,
7641
TTT count: 21
TTC: 106,258,2036,2276,2327,2621,3482,5029,5172,5340,5860,
6003,6150,6316,6485,6683,6795,7317,7350,7396,7501
TTC count: 21
CCT: 668,1177,1688,1900,2057,2087,3433,3559,3979,4208,4522,
5445,5508,5734,5745,5991,6323,6402,6591,6639,6747,
6786
CCT count: 22
CCC: 123,912,1326,1774,2156,2187,2884,3238,3308,3940,3955,
3994,4061,4143,4750,4761,5269,5547,5569,5581,5616,
5742,5825,5921,6101,6124,6416,6488,6533,6587,6809,
7383
CCC count: 32
CCA: 2854,3147,3736,4907,5220,6057,7287,7373
CCA count: 8
CCG: (0)
TCT: 80,1487,1949,3549,5439
TCT count: 5
TCC: 183,665,1660,2283,2375,2627,5289,6016,6136
TCC count: 9
TCA: 813,846,1067,1421,1465,1892,2471,2615,2860,3330,4380,
4921,4944,5757,6087,7127,7308,7421
TCA count: 18
TCG: 3637
TCG count: 1
AGT: 68,71,407,727,957,1234,1371,1570,2080,3336,3397,3440,
3789,3961,4351,4417,5403,5960,6111,6696,6995,7367
AGT count: 22
AGC: (0)
ACT: 1123,2309,4817,5144,5490,5769,5943,7069,7157
ACT count: 9
ACC: 400,444,1580,2702,3045,3162,4975,6499
ACC count: 8
ACA: 703,2070,2509,2708,3391,6564
ACA count: 6
ACG: 1747,2561,3175
ACG count: 3
TGG: 518,1002,1129,1796,1840,2259,3406,3850,4235,4255,4397,
4580,6467,7606
TGG count: 14
TAT: 623,803,1672,2485,2939,3281,3318,3514,4606,5655,6384,
6648
TAT count: 12
TAC: 1854,2609,2638,4002,6783,7014
TAC count: 6
GTT: 1304,2233,4197,5811,6516,7652
GTT count: 6
GTC: 3599,4885,5484,5682,6829,7276
GTC count: 6
GTA: 393,1442,2246,2318,2986,3153,3815,5263,5915,6677
GTA count: 10
GTG: 1,1787,1828,2030,2603,2847,3579,3897,4985,4997
GTG count: 10
TAA: 138,1018,1699,3916
TAA count: 4
TAG: 7408
TAG count: 1
TGA: 604,2833,2980,3112,3967,4044,4078,4267,4314
TGA count: 9
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