This is an appendix to: Quantum Biology - 11
22) Codon Usage Bias:
About: Rabies virus genomic RNA, complete genome, strain:Nishigahara (11926bp)
VERSION: AB044824.1
CODONS & LOCATIONS:
GCT: 3,137,164,206,342,431,596,653,764,784,908,1020,1070,
1098,1184,1280,1289,1542,1575,1623,2037,2076,2109,
2118,2130,2137,2313,2360,2392,2404,2592,2616,2794,
2806,2869,3163,3221,3329,3337,3650,3659,3736,3849,
3879,3996,4164,4346,4352,4912,5106,5323,5337,5414,
5466,5570,5617,5691,5837,6074,6146,6169,6191,6236,
6245,6255,6292,6419,6788,6882,6890,7074,7121,7128,
7223,7471,7493,7501,7516,7531,7587,7637,7652,7733,
7911,7967,8046,8059,8070,8241,8278,8367,8423,8501,
8689,8911,8936,8987,9039,9278,9305,9326,9462,9482,
9558,9674,9709,9791,9821,9938,9943,9986,10014,10101,
10139,10248,10321,10326,10376,10466,10577,10913,10935,
10956,11012,11055,11139,11307,11370,11457,11476,11566,
11614,11785,11788,11823,11881
GCT count: 136
GCC: 77,124,184,254,257,689,892,948,980,1061,1265,1367,
1385,1442,1551,1560,1675,1703,1783,1970,2011,2046,
2053,2246,2265,2319,2352,2566,2684,2882,3210,3264,
3417,3444,3530,3636,3680,3910,4014,4471,4721,4771,
5180,5249,5481,5727,5749,5772,5869,5913,5967,6206,
6241,6317,6362,6633,6743,6911,6942,6953,6956,7004,
7027,7034,7142,7444,7462,7480,7522,7704,7820,7839,
7881,7949,8287,8328,8474,8684,8890,9076,9099,9126,
9147,9181,9269,9377,9467,9544,9876,9879,10240,10273,
10362,10389,10426,10455,10572,10591,10637,11092,11116,
11319,11363,11601
GCC count: 104
GCA: 44,49,224,246,293,296,299,304,359,408,478,482,522,
566,619,724,737,750,811,827,836,898,1049,1064,1181,
1208,1214,1327,1519,1738,1742,2198,2235,2375,2397,
2480,2633,2715,2955,2971,2993,3025,3184,3224,3325,
3477,3555,3575,3628,3791,3971,3984,4037,4041,4102,
4153,4180,4229,4313,4501,4519,4561,4571,4642,4706,
4788,5222,5269,5290,5307,5373,5380,5694,5895,6000,
6348,6444,6518,6527,6621,6699,6759,6782,6800,7155,
7217,7251,7508,7672,7686,7719,7762,7807,7852,7923,
7983,8023,8355,8415,8576,8703,8746,8806,8817,8830,
8946,9131,9236,9287,9350,9361,9588,9643,9904,10109,
10133,10148,10245,10294,10338,10353,10446,10617,10647,
10766,10803,10821,10860,10989,11110,11113,11132,11282,
11414,11431,11434,11680,11801,11817
GCA count: 139
GCG: 35,1413,1728,2251,2508,2560,2712,3120,3561,3662,3840,
4097,4599,4833,5174,5213,5298,5550,5683,6625,6922,
7489,8226,9157,9678,9950,9966,10208,10299,10548,11575,
11923
GCG count: 32
CGT: 321,613,792,938,972,1204,1370,1404,1529,1798,1811,
1877,2259,2610,2781,3363,3717,3769,3901,4271,4578,
5171,5201,5920,6326,6500,6778,6832,8145,8512,8753,
8860,8914,8992,9495,9815,9832,10024,10501,10642,10673,
10714,10996,11142,11324,11392,11468,11675
CGT count: 48
CGC: (0)
CGA: 211,271,274,672,700,889,975,1135,1177,1231,1243,1292,
1313,1410,1537,1706,2032,2166,2348,2410,2580,2583,
2687,2733,2736,2934,3014,3020,3390,3420,3424,3469,
3740,3825,3892,4135,4156,4177,4636,4645,4677,4765,
4908,5099,5230,5366,5882,5981,6125,6203,6476,6546,
6559,6690,6793,6848,6874,6903,6969,7044,7065,7115,
7202,7268,7300,7615,7701,7709,7862,7894,8273,8378,
8409,8487,8566,8749,8867,8886,9184,9254,9386,9416,
9703,9913,10001,10087,10175,10178,10484,11022,11034,
11270,11492,11541,11848
CGA count: 95
CGG: 327,493,544,716,1093,1258,1334,1436,1903,2273,2477,
2664,2691,2787,3160,3179,3370,3544,4084,4300,4306,
4441,4477,5071,5144,5183,5595,5976,6342,6995,7418,
7633,8562,8636,8646,8672,9214,9242,9357,9458,9477,
10423,10526,10622,10904,10924,11082,11808
CGG count: 48
AGA: 21,24,95,129,172,331,362,370,375,418,582,680,743,772,
830,858,868,871,878,903,1037,1080,1124,1139,1142,1151,
1158,1162,1171,1197,1246,1268,1276,1322,1337,1401,
1522,1548,1570,1580,1602,1610,1613,1637,1646,1748,
1759,1772,1775,1805,1830,1847,1851,1873,1883,1937,
1940,1954,1967,1975,1981,2002,2105,2113,2125,2146,
2292,2329,2378,2434,2449,2513,2622,2636,2639,2667,
2725,2848,2898,2918,2974,3056,3072,3081,3099,3108,
3148,3152,3189,3194,3303,3315,3397,3463,3571,3623,
3646,3656,3675,3692,3700,3923,3959,3966,3987,4003,
4010,4073,4116,4168,4206,4211,4234,4268,4286,4332,
4383,4409,4495,4605,4621,4757,4774,4796,4878,4892,
4926,5015,5057,5151,5188,5236,5326,5349,5362,5410,
5417,5426,5462,5475,5505,5540,5543,5553,5586,5609,
5642,5765,5832,5841,5852,5875,5972,5984,6011,6056,
6106,6129,6152,6218,6345,6383,6404,6539,6586,6596,
6611,6648,6704,6750,6811,6836,6896,6989,7007,7013,
7054,7095,7169,7229,7290,7295,7304,7345,7359,7378,
7400,7404,7409,7496,7544,7572,7595,7646,7669,7748,
7751,7803,7833,7842,8035,8056,8093,8156,8187,8191,
8237,8252,8261,8265,8294,8297,8361,8393,8402,8431,
8571,8583,8587,8598,8606,8609,8627,8656,8676,8696,
8715,8719,8733,8770,8838,8999,9024,9092,9150,9239,
9247,9302,9313,9317,9330,9400,9409,9425,9447,9501,
9531,9669,9681,9720,9744,9825,9840,9845,9865,9899,
9909,9953,9974,10066,10075,10154,10166,10172,10199,
10232,10265,10282,10310,10373,10399,10431,10481,10568,
10598,10664,10680,10688,10725,10762,10834,10871,10953,
11049,11122,11128,11136,11159,11185,11209,11240,11260,
11343,11484,11505,11526,11593,11653,11662,11670,11700,
11712,11757,11763,11777,11827,11859
AGA count: 307
AGG: 83,108,199,315,367,421,439,442,458,515,532,572,781,
881,895,1105,1110,1309,1423,1633,1666,1716,1735,1769,
1839,1844,1925,1929,1978,2028,2086,2089,2174,2230,
2531,2537,2647,2704,2758,2802,2819,2845,2878,2892,
2915,2962,3309,3472,3490,3537,3759,3853,3928,3978,
4033,4215,4370,4399,4417,4421,4468,4593,4611,4657,
4804,4808,4994,5048,5119,5134,5260,5423,5579,5622,
5656,5745,5754,5878,5904,6037,6088,6409,6425,6450,
6550,6574,6589,6636,6639,6770,6870,6998,7039,7060,
7206,7220,7239,7330,7429,7483,7513,7548,7563,7592,
7603,7680,7715,7730,7956,8020,8051,8079,8108,8133,
8171,8209,8324,8350,8439,8667,8700,8822,8825,8899,
8982,9054,9114,9119,9135,9161,9164,9366,9438,9506,
9551,9562,9602,9657,9695,9764,10008,10090,10098,10188,
10212,10218,10333,10386,10492,10532,10545,10661,10973,
11169,11182,11286,11640,11689,11704,11733,11749
AGG count: 161
AAT: 54,70,101,104,144,231,251,349,386,400,425,451,526,
610,646,656,818,998,1033,1046,1113,1304,1358,1431,
1448,1512,1533,1599,1617,1699,1823,1835,1862,2023,
2068,2082,2190,2207,2241,2322,2332,2338,2364,2369,
2388,2496,2606,2752,2823,2958,2978,2997,3063,3104,
3197,3245,3375,3452,3856,3953,4112,4122,4148,4174,
4379,4454,4462,4489,4539,4735,4744,4811,4839,4954,
4967,5026,5067,5076,5244,5281,5311,5583,5613,5702,
5737,5814,5948,5964,6062,6182,6308,6472,6803,6820,
6824,6963,6982,7079,7089,7173,7199,7281,7436,7476,
7552,7580,7683,7694,7825,7868,7884,7889,7908,7936,
8012,8084,8120,8397,8464,8525,8537,8630,8643,8964,
9027,9050,9517,9578,9609,9729,9741,9798,9869,9959,
9978,10019,10605,10847,11087,11106,11196,11205,11225,
11232,11405,11867
AAT count: 146
AAC: 7,10,15,59,193,218,261,405,539,548,560,592,637,694,
1129,1188,1225,1376,1397,1481,1485,1501,1605,1908,
1917,1949,1985,2042,2211,2255,2281,2355,2407,2420,
2443,2464,2500,2524,2549,2650,2827,2840,2906,3010,
3032,3167,3173,3217,3283,3290,3449,3482,3507,3568,
3580,3590,3640,3668,3751,3812,3859,3883,3887,4044,
4087,4246,4290,4328,4785,4981,4991,5044,5122,5274,
5356,5399,5470,5496,5508,5520,5526,5576,5687,5742,
5762,5829,5916,5990,6017,6114,6132,6174,6285,6330,
6480,6562,6731,6737,6900,7131,7179,7278,7458,7466,
7559,7566,7599,7726,7790,7875,7927,8247,8445,8556,
8622,8930,9033,9044,9057,9392,9617,9633,9735,9829,
9887,9931,10080,10104,10114,10253,10278,10330,10356,
10410,10471,10557,10587,10625,10711,10728,10733,10773,
10830,10838,10898,10920,10942,10982,11151,11219,11291,
11340,11352,11421,11502,11513,11530,11607,11730,11795,
11855
AAC count: 161
GAT: 74,140,355,413,569,814,874,1017,1154,1217,1220,1238,
1300,1456,1563,1590,1595,1689,1692,1764,1886,2094,
2177,2217,2220,2305,2382,2438,2575,2739,2763,2872,
2929,3272,3519,3794,3907,4226,4339,4498,4558,4717,
4726,4732,5000,5039,5126,5163,5209,5369,5436,5448,
5537,5558,5661,5705,5889,6185,6227,6261,6468,6489,
6570,6593,6655,6660,6684,6774,6839,7019,7308,7326,
7339,7388,7538,7541,7736,7943,7952,7959,8219,8549,
8639,8706,8902,9228,9275,9489,9510,9612,9660,9692,
9758,9770,9795,9818,9992,10127,10158,10227,10303,10418,
10538,10608,10613,10685,10744,10800,10854,11052,11173,
11213,11235,11327,11397,11441,11636,11645,11725,11738,
11839,11888
GAT count: 122
GAC: 80,266,337,436,454,461,634,1192,1583,1653,1678,1752,
2491,2951,3043,3076,3686,3725,3800,3809,3931,3941,
4068,4105,4574,4664,4711,4747,4801,4884,5096,5166,
5216,5439,5514,5600,5606,6027,6070,6083,6222,6428,
6716,6762,6828,6877,7152,7160,7166,7263,7754,7770,
7916,8385,8442,8545,8651,9071,9081,9233,9290,9296,
9333,9565,9597,9716,9725,9981,10031,10259,10380,10668,
10695,10719,10785,10815,10876,10907,11066,11229,11373,
11873
GAC count: 82
TGT: 88,188,277,281,469,510,604,650,705,757,776,843,885,
991,1012,1067,1083,1087,1228,1342,1439,1459,1586,1720,
1789,1898,2185,2295,2341,2452,2527,2588,2656,2678,
2798,2946,3004,3028,3047,3112,3134,3201,3340,3460,
3486,3565,3595,3604,3653,3745,3787,3871,3938,3992,
4000,4053,4127,4186,4220,4294,4403,4424,4435,4446,
4483,4639,4693,4751,4754,4815,4887,4897,5054,5138,
5304,5359,5489,5592,5757,5809,5817,5860,5935,5945,
6080,6095,6117,6163,6271,6277,6323,6392,6510,6615,
6725,6914,6946,7099,7106,7186,7319,7333,7351,7611,
7624,7627,7759,7798,7900,7972,7999,8074,8113,8162,
8176,8230,8371,8468,8479,8680,8773,8811,8846,8926,
8972,9104,9176,9206,9223,9262,9369,9428,9571,9629,
9811,9921,9935,10084,10288,10367,10509,10514,10561,
10580,10777,10797,10843,10864,10948,10979,11096,11165,
11296,11380,11427,11497,11587,11604,11623,11791,11812,
11834,11843,11891,11900,11906,11909,11917
TGT count: 168
TGC: 9284
TGC count: 1
CAA: 18,154,169,536,643,1364,1724,1808,1859,2153,2545,2630,
2661,2775,2989,3233,3239,3299,3619,3756,3783,4048,
4252,4360,4395,4649,4829,4916,5004,5131,5630,5786,
6047,6053,6264,6401,6599,6728,6785,6851,6950,7031,
7287,7577,7742,7829,7946,8553,8664,8789,9110,9322,
9433,10185,10407,10895,10986,11300,11402
CAA count: 59
CAG: 234,243,753,1053,1347,1351,1620,1794,2101,2424,2810,
2863,3439,3558,3712,4139,4257,4276,4365,4545,4584,
4818,5034,5092,5102,5343,5452,5697,6022,6515,7897,
7975,7980,8148,8495,8507,8851,8871,10047,10440,10752,
10756,10966,11798
CAG count: 44
GAA: 178,202,833,958,1262,1475,1696,2005,2133,2204,2469,
2520,2619,2673,3277,3312,3541,3843,3914,4007,4349,
5573,5639,6008,6149,6297,6351,7271,7786,8952,8978,
8996,9534,9896,10707,10806,11039,11709
GAA count: 38
GAG: 121,149,505,661,952,1388,1816,2941,2967,4059,4196,
4261,4343,4688,4856,4961,5226,5457,5565,6413,6972,
7047,7348,7368,7662,8026,8042,8412,8532,9096,9685,
9753,9788,10130,10655,11058,11277,11411,11618
GAG count: 39
GGT: 112,394,490,787,801,986,1028,1271,1554,1713,1867,2071,
2309,2670,2768,2832,3038,3123,3207,3319,3353,3407,
3457,3599,3683,3829,4093,4144,4201,4457,4660,4670,
4874,5154,5191,5429,5667,5716,5724,6044,6435,6494,
6507,6676,6767,7817,8197,8381,8741,8779,8975,9013,
9452,9528,10070,10136,10143,10223,10235,10316,10402,
10436,10601,10769,10889,11264,11463,11569,11597
GGT count: 69
GGC: 10452
GGC count: 1
GGA: 318,397,448,616,1445,1880,2895,3145,3414,3466,3672,
3963,3981,4081,4836,5141,5478,5826,6034,6282,6314,
6845,7519,7712,8130,8244,8730,8814,10523,11267,11545,
11563
GGA count: 32
GGG: 1121,1731,2749,4683,4871,4948,4951,5320,5855,5901,
6067,6258,6380,6523,6652,6906,7426,7649,8105,8321,
8522,10535,10741
GGG count: 23
CAT: 39,623,631,667,805,854,928,1003,1076,1297,1361,1380,
1469,1472,1504,1670,2059,2268,2372,2643,2718,2729,
2755,2856,2983,3127,3156,3230,3256,3346,3431,3434,
3502,3523,3731,3804,4240,4243,4321,4387,4427,4506,
4523,4843,4851,4900,4986,5011,5022,5029,5064,5111,
5194,5206,5255,5284,5330,5391,5405,5444,5730,5775,
5791,5951,5960,5993,6143,6251,6302,6372,6486,6581,
6753,6858,6932,6935,7022,7084,7136,7163,7246,7284,
7365,7415,7618,7739,7778,7811,8139,8339,8436,8450,
8540,8875,8943,9017,9340,9345,9380,9594,9620,9775,
9857,9893,10037,10053,10181,10256,10458,10475,10629,
10652,10700,10790,11005,11189,11216,11256,11312,11537,
11626,11684,11721,11753,11767,11820
CAT count: 126
CAC: 379,466,823,917,932,942,1007,1626,1683,1870,1958,1991,
2121,2484,2487,2541,2597,2922,3059,3130,3400,3550,
3586,3607,3610,3613,3821,3898,4249,4355,4628,4782,
4822,4930,5264,5278,5384,5486,5821,6139,6708,6797,
6866,6938,7112,7211,7257,7630,7904,7992,8223,8269,
8282,8306,8659,8760,8918,8960,9020,9218,9471,9801,
9890,9962,10346,10633,10736,10879,10970,11075,11389,
11480,11579,11631,11715,11741
CAC count: 76
ATT: 91,563,719,732,924,969,1058,1132,1407,1453,2180,2503,
2625,3213,3287,3383,3944,4281,4324,4465,4534,4550,
4614,4696,5157,5647,5782,5923,5932,6030,6091,6311,
6369,6395,6842,7001,7102,7234,7313,7393,7396,7535,
7814,8003,8579,8799,8939,9060,9169,9272,9738,10794,
10818,10885,10938,11102,11355,11518,11554,11774,11914
ATT count: 61
ATC: 134,529,740,1466,1545,1892,1988,2276,2707,2986,3007,
3115,3293,3773,3865,3934,4108,4777,5499,5844,5908,
6230,6642,6679,6960,7432,7676,8089,8358,8418,8612,
8833,9002,9299,9443,9492,9698,9732,9780,9883,10541,
10827,11155,11192,11243,11386,11446,11450,11558,11696
ATC count: 50
ATA: 30,839,1023,1174,1331,2223,2742,2835,3137,3428,3533,
4018,4317,5720,5957,6136,6212,6248,6320,6483,6535,
6566,6756,7439,7621,7697,8142,9547,9605,9636,10383,
10462,10930,11015,11316,11424
ATA count: 36
CTT: 117,214,289,310,486,497,600,676,847,862,921,966,1117,
1147,1166,1252,1419,1495,1526,1566,1710,1921,1933,
1996,2018,2064,2161,2170,2214,2401,2416,2699,2859,
2887,3052,3091,3094,3251,3268,3306,3332,3404,3818,
3832,4064,4076,4160,4336,4374,4568,4631,4714,4848,
4903,4933,4977,5018,5079,5287,5533,5626,5673,5768,
5929,6041,6120,6156,6178,6188,6366,6377,6386,6645,
6713,6721,6806,6886,7016,7070,7124,7139,7146,7689,
7988,8015,8098,8101,8127,8180,8256,8309,8456,8459,
8515,8519,8602,8615,8692,8712,8725,8764,8784,8803,
8864,8906,9172,9354,9396,9403,9413,9581,9623,9665,
9689,9713,9750,9808,9837,9917,9995,10004,10042,10123,
10162,10204,10748,10780,10892,11000,11063,11079,11147,
11200,11274,11348,11366,11408,11417,11487,11522,11718,
11770,11863,11896,11903
CTT count: 145
CTC: 64,390,472,500,627,712,963,1234,1255,1490,1629,1659,
1999,2056,2430,2553,2570,2745,2910,3084,3087,3141,
3496,3526,3705,4026,4131,4431,4511,4514,4654,4673,
4793,4825,4938,4957,4974,5294,5387,5523,5710,6101,
6166,6196,6215,6668,6696,6862,7316,7555,7642,7656,
7847,7856,7878,7931,7939,8064,8153,8165,8592,8795,
8856,8882,8921,9189,9192,9196,9406,9520,9541,9575,
9652,9761,9783,9862,9970,9998,10056,10062,10291,10343,
10349,10370,10392,10414,10488,10506,10554,11019,11027,
11069,11072,11336,11437,11745,11830,11876
CTC count: 98
CTA: 286,697,728,1043,1249,1316,1394,1642,1780,1895,2097,
2143,2289,2326,2456,2791,3499,3583,3837,3874,4700,
5082,5333,5402,5432,5502,5997,6439,6555,6605,6630,
6919,6985,7092,7584,7608,7723,7781,8067,8302,8335,
8343,8346,8618,8709,9251,10059,10194,10396,10867,11250,
11359,11473,11509,11611,11665,11780
CTA count: 57
CTG: 334,798,1200,1557,1663,2050,2301,2316,2446,2603,2722,
2816,2902,3000,3068,3350,3920,4223,4608,4667,4881,
4922,5377,5395,5734,6465,6817,7176,7260,7323,7385,
8116,8183,8216,8767,8895,9498,10703,10722,11008,11179,
11572,11583,11870
CTG count: 44
TTA: 239,795,1285,1428,2227,2694,3510,3895,3948,4617,5650,
5885,6003,6098,6336,6358,6457,6542,6618,7189,7422,
7766,8030,9139,9259,9281,10191,10268,10810,10901,11648
TTA count: 31
TTG: 518,588,686,1211,1498,1686,2194,2262,2385,2925,3260,
3516,3797,3904,4406,4413,5233,5346,5562,5664,5872,
6978,7050,7057,7336,7665,9036,9514,10519,11460
TTG count: 30
AAA: 181,221,808,1319,1478,2008,2238,2472,3280,3748,4030,
4309,4438,4760,5239,5352,5653,5676,5987,6447,6925,
7118,7182,7192,7745,8312,8388,8736,8955,11031,11851
AAA count: 31
AAG: 1944,2459,3513,4022,4942,5007,5301,5805,5864,5892,
6354,6460,6663,6672,6928,8201,8364,9374,9524,9537,
9646,10118,10285,11533
AAG count: 24
ATG: 345,768,1515,2534,3696,4090,4602,6740,8374,9293,9946,
10095,10313
ATG count: 13
TTT: 175,585,683,708,850,1391,1755,2140,2157,3227,3356,
3367,3616,3631,4264,4449,4486,4587,4738,5089,5340,
5635,5898,5938,6014,6159,6431,6453,6497,6975,7149,
7226,7254,7354,7371,7374,7773,7962,8406,8490,8504,
8842,8878,9107,9420,9649,9706,10495,10594,10691,10857,
10882,11043,11046,11246,11332,11885
TTT count: 57
TTC: 912,935,995,1354,1854,1911,2653,3868,4964,5060,5778,
6110,6577,6693,6814,8038,8136,8204,8290,8482,8968,
9084,9455,9474,10307,10564,10584,10676,10959,11176,
11804
TTC count: 31
CCT: 161,196,352,1073,1102,1802,2557,2853,3296,3360,3380,
3411,3722,3766,4392,4542,4555,4741,5547,5589,5926,
5954,6209,6532,6992,7412,7795,8529,8757,9089,9486,
9747,9805,10028,10034,10963,10993,11693
CCT count: 38
CCC: 382,1507,1914,2285,2600,2613,3689,4297,4492,4564,5115,
5420,5492,5530,5794,5847,6199,6747,6966,8159,9626,
9872,11376
CCC count: 23
CCA: 1373,1820,3975,4119,5942,6233,6274,6608,6734,7865,
8428,8633,8933,9266,9337,10359,11119
CCA count: 17
CCG: 6289
CCG count: 1
TCT: 98,1090,4183,4945,5160,5511,5603,5670,5713,6268,6687,
8124,8194,8722,9047,9144,9568,10050,10478,10824,10851,
11162,11222,11383
TCT count: 24
TCC: 1040,1786,2335,2427,2813,2875,3170,3322,3815,5252,
6389,8009,8559,9030,9123,10498,10759,11760
TCC count: 18
TCA: 640,1745,1964,2563,4480,4581,4590,5051,5148,5219,6059,
6416,6855,7243,7528,8234,8595,11590
TCA count: 18
TCG: 4768,4859,9555
TCG count: 3
AGT: 27,1649,1656,1826,2014,2149,2345,2517,2772,2778,3236,
3762,3846,3862,3917,3956,4624,4703,4868,4970,5197,
6333,7195,7381,7871,7919,8212,8331,9210,9308,9584,
9767,9956,10011,10916,11303,11657
AGT count: 37
AGC: (0)
ACT: 761,1416,2079,2413,2938,3017,4680,8453,9591,10449,
10927
ACT count: 11
ACC: 3343,3394,3643,7996,10945,11454
ACC count: 6
ACA: 228,557,3387,3709,7362,7569,9154,10215
ACA count: 8
ACG: 4596,7486,7505,9640
ACG count: 4
TGG: 428,747,955,2866,5177,5680,7214,7275,7447,7836,8776,
8949,10151,10262,10443,10658
TGG count: 16
TAT: 445,1463,1889,2784,3035,3176,3204,6077,6398,6504,7109,
7659,9389,10910
TAT count: 14
TAC: 67,158,664,3248,3665,3728,5517
TAC count: 7
GTT: 307,983,2201,3242,3493,3547,4303,4729,4919,6050,10976,
11099
GTT count: 12
GTC: 324,4237,6339,6602,6893,8792,10169,10529,10551,11253
GTC count: 10
GTA: 2298,2681,5085
GTA count: 3
GTG: 4056,4997,9989,11125
GTG count: 4
TAA: 607,6305,7859,11920
TAA count: 4
TAG: 945,1961,7525,8006
TAG count: 4
TGA: 475,865,4171,4474,6422,7010,7342,8168,8471,8498,9383
TGA count: 11
23) Codon Usage Bias:
About: Influenza C virus (C/Ann Arbor/1/50) PB1 gene for polymerase 1, complete cds (2363bp)
VERSION: NC_006308.2
CODONS & LOCATIONS:
GCT: 65,450,512,542,972,990,1041,1049,1131,1241,1262,1377,
1422,1536,1551,1593,1633,1650,1794,1999,2136,2181,
2262,2289,2355,2361
GCT count: 26
GCC: 95,292,437,444,471,705,894,958,1317,1547,1659,1954,
2154
GCC count: 13
GCA: 2,8,223,297,338,354,377,455,523,684,731,741,747,798,
861,918,981,1033,1371,1429,1563,1596,1825,1947,1980,
2013,2046,2055,2143,2205,2253,2314
GCA count: 32
GCG: 441,829,1689,2083,2098,2112
GCG count: 6
CGT: 56,269,1465
CGT count: 3
CGC: (0)
CGA: 53,190
CGA count: 2
CGG: 394,755,1413
CGG count: 3
AGA: 150,168,210,213,236,242,301,310,315,362,387,402,429,
479,485,536,554,567,588,595,599,606,619,681,710,720,
735,738,768,802,814,824,853,856,871,935,1004,1025,
1089,1104,1135,1153,1164,1169,1196,1210,1307,1410,
1481,1517,1612,1679,1686,1719,1734,1769,1778,1881,
1944,1970,2004,2010,2019,2036,2043,2060,2067,2150,
2159,2162,2174,2178,2193,2210,2213,2219,2228,2237,
2257,2265,2277
AGA count: 81
AGG: 12,92,263,326,398,488,500,591,616,897,1082,1114,1213,
1235,1322,1577,1665,1727,1843,1887,1962,2247,2282,
2285
AGG count: 24
AAT: 23,104,127,201,347,365,374,509,517,530,539,562,581,
641,647,656,677,696,727,782,806,817,849,891,924,939,
946,951,955,1019,1059,1085,1098,1124,1139,1147,1160,
1201,1238,1250,1345,1392,1406,1419,1436,1462,1492,
1530,1543,1572,1604,1617,1626,1655,1742,1745,1749,
1773,1790,1865,1876,1884,1905,1958,1974,2031,2075,
2107,2121,2129,2186,2231,2338,2346
AAT count: 74
AAC: 27,48,74,77,122,140,185,256,260,359,407,432,482,506,
578,626,661,689,791,865,903,929,961,964,1072,1109,
1179,1189,1257,1268,1383,1629,1763,1807,1815,1818,
1873,1896,1917,1928,1991,2016,2167,2296
AAC count: 44
GAT: 38,68,115,273,305,414,468,533,546,666,761,909,1014,
1302,1353,1512,1584,1622,1713,1783,1797,1811,1869,
1935,2051,2250
GAT count: 26
GAC: 159,419,461,503,651,1078,1334,1339,1356,1403,1923,
2115,2196
GAC count: 13
TGT: 228,286,342,638,785,794,810,839,878,1037,1056,1067,
1217,1221,1293,1326,1361,1450,1504,1523,1600,1671,
2089,2101,2325
TGT count: 25
TGC: (0)
CAA: 239,575,778,1001,1498,1901
CAA count: 6
CAG: 175,278,912,1045
CAG count: 4
GAA: 5,180,426,551,717,821,1022,1144,1458,1724,1739,1853,
1860,1977,2063,2189,2271,2341
GAA count: 18
GAG: 246,351,669,969,1279,1567,1752
GAG count: 7
GGT: 251,584,843,846,1387,1470,1800,2078
GGT count: 8
GGC: (0)
GGA: 20,137,323,613,724,1804
GGA count: 6
GGG: 320,644,714,1247,1731,2133,2202
GGG count: 7
CAT: 61,111,118,154,172,493,701,772,995,1121,1288,1398,
1704,1757,1766,1833,1950,1995,2240,2333
CAT count: 20
CAC: 131,751,998,1556,1639
CAC count: 5
ATT: 15,144,329,520,693,744,976,1206,1520,1608,1682,1787,
1821,1836,1892,1932,2027,2171,2199,2268,2329
ATT count: 21
ATC: 71,1156,2071
ATC count: 3
ATA: 80,88,204,410,474,526,1297,1395,1668,2118,2222,2244
ATA count: 12
CTT: 231,369,380,390,883,984,1028,1092,1182,1193,1275,1348,
1365,1455,1487,1508,1533,1642,1693,1708,1830,1910,
2300,2311,2352
CTT count: 25
CTC: 100,164,383,886,1007,1010,1474,1674,2125,2305
CTC count: 10
CTA: 45,834,874,1311,1645,2308
CTA count: 6
CTG: 1231,1840
CTG count: 2
TTA: 334,496,559,868,1227,1495,1588,1662,2092,2293
TTA count: 10
TTG: 987,1075,1186,1331,1966,2104,2146
TTG count: 7
AAA: 147,266,570,603,623,630,1101,1127,1314,1760,2095,2234
AAA count: 12
AAG: 193,216,1062,1117,1283,1846
AAG count: 6
ATG: 900,1539,2040,2139
ATG count: 4
TTT: 42,134,196,219,672,775,915,1052,1224,1368,1416,1857,
1920,1987
TTT count: 14
TTC: 281,422,1254,2216
TTC count: 4
CCT: 85,2024,2349
CCT count: 3
CCC: 1478
CCC count: 1
CCA: 207
CCA count: 1
CCG: (0)
TCT: (0)
TCC: 1342,1527
TCC count: 2
TCA: 108,1095,1380,1716
TCA count: 4
TCG: (0)
AGT: 464,609,764,906,942,1271,1432,1580,2274
AGT count: 9
AGC: (0)
ACT: 447,458,1484,1560,1850,1914,2007,2358
ACT count: 8
ACC: 635
ACC count: 1
ACA: 1150,2086
ACA count: 2
ACG: (0)
TGG: 289,932,1439
TGG count: 3
TAT: 758,1244,1426,1636
TAT count: 4
TAC: (0)
GTT: 921,1374
GTT count: 2
GTC: 1265
GTC count: 1
GTA: 1501,1983
GTA count: 2
GTG: (0)
TAA: (0)
TAG: (0)
TGA: 788,2225
TGA count: 2
24) Codon Usage Bias:
About: La Crosse virus segment S, complete genome (984bp)
VERSION: NC_004110.1
CODONS & LOCATIONS:
GCT: 190,232,235,262,463,561,635,688,714,748,780,899
GCT count: 12
GCC: 217,226,249,379,495,622,695,734
GCC count: 8
GCA: 109,121,142,172,193,220,285,426,588,593,630,641,652,
679,682,711,762,773,795,802,896,925,975
GCA count: 23
GCG: 243,740
GCG count: 2
CGT: (0)
CGC: (0)
CGA: 345,405,429
CGA count: 3
CGG: 86
CGG count: 1
AGA: 74,252,279,361,382,439,498,528,580,617,671,692,708
AGA count: 13
AGG: 60,117,199,256,293,322,480,522,674,701,729,813,866,
878,917,942
AGG count: 16
AAT: 19,30,34,66,124,169,176,214,272,301,304,333,409,459,
472,531,551,573,608,719,767,789,809,821,828,842,851,
892,903,950,955,960
AAT count: 32
AAC: 114,184,265,319,325,328,340,444,454,525,543,753,882,
931
AAC count: 14
GAT: 81,103,128,133,139,394,412,415,435,501,597,655,663,
847
GAT count: 14
GAC: 44,154,487,564,601,921
GAC count: 6
TGT: 6,37,40,47,78,95,160,477,705,838
TGT count: 10
TGC: (0)
CAA: 585,862,888
CAA count: 3
CAG: 397,777,968
CAG count: 3
GAA: 27,725
GAA count: 2
GAG: 418,466,799
GAG count: 3
GGT: 146,288,337,371,387,855,907,911,914
GGT count: 9
GGC: (0)
GGA: 63,316,540
GGA count: 3
GGG: 722,972
GGG count: 2
CAT: 307,354,512,567,785,946
CAT count: 6
CAC: 13,358,577,648,668,978
CAC count: 6
ATT: 89,374,448,685,756,965
ATT count: 6
ATC: 70,202,298,366,451,506,859
ATC count: 7
ATA: 149,401,743,833
ATA count: 4
CTT: 23,187,207,349,391,516,874
CTT count: 7
CTC: 181,211,238,422,605,644
CTC count: 6
CTA: 57,269,555,818,825
CTA count: 5
CTG: 613
CTG count: 1
TTA: 53,99,164,625
TTA count: 4
TTG: 16,275,770
TTG count: 3
AAA: 928
AAA count: 1
AAG: 223,229,259,658
AAG count: 4
ATG: 483,638,792
ATG count: 3
TTT: 50,310,535,546,870
TTT count: 5
TTC: 157,805
TTC count: 2
CCT: 136,313,759
CCT count: 3
CCC: 10,558
CCC count: 2
CCA: 885
CCA count: 1
CCG: (0)
TCT: 469
TCT count: 1
TCC: 519
TCC count: 1
TCA: (0)
TCG: (0)
AGT: 1,490
AGT count: 2
AGC: (0)
ACT: 982
ACT count: 1
ACC: (0)
ACA: (0)
ACG: (0)
TGG: 92,570
TGG count: 2
TAT: 509
TAT count: 1
TAC: (0)
GTT: 196,432
GTT count: 2
GTC: 106
GTC count: 1
GTA: (0)
GTG: 282
GTG count: 1
TAA: 246
TAA count: 1
TAG: (0)
TGA: 698,737
TGA count: 2
25) Codon Usage Bias:
About: Rotavirus C segment 1, complete sequence (3309bp)
VERSION: NC_007547.1
CODONS & LOCATIONS:
GCT: 2,48,54,234,354,468,516,519,549,552,882,1053,1407,
1440,1455,1466,1576,1602,1695,1776,1830,1917,1927,
2061,2085,2145,2175,2375,2406,2453,2752,2925,2988,
3087,3102,3189,3212,3224,3307
GCT count: 39
GCC: 117,230,575,705,786,996,1761,2717
GCC count: 8
GCA: 17,270,335,339,658,672,896,900,908,1037,1227,1295,
1353,1476,1515,1647,1673,1782,1938,2016,2022,2046,
2130,2157,2286,2298,2366,2418,2429,2520,2538,2547,
2730,2904,2984,3123,3297
GCA count: 37
GCG: 327,639,642,750,1041,1084,1206,1789,1821,2142,2391,
2878,3051,3218
GCG count: 14
CGT: 29,382,1078,1125,1395,1482,1531,1880,2444,2742,2908
CGT count: 11
CGC: (0)
CGA: 44,541,591,613,662,796,801,1196,1282,1629,1644,2505,
2695,2774,2800,3241,3259
CGA count: 17
CGG: 1850,1893,2562,2759
CGG count: 4
AGA: 32,60,122,137,173,178,193,239,243,293,323,350,398,
407,522,527,579,597,708,738,821,830,875,887,915,941,
952,971,1032,1049,1066,1157,1175,1182,1187,1190,1245,
1249,1275,1288,1334,1356,1377,1380,1398,1404,1488,
1499,1538,1548,1632,1656,1721,1730,1751,1798,1804,
1840,1865,1904,1961,1980,1994,2052,2082,2113,2123,
2181,2199,2227,2259,2321,2495,2552,2559,2671,2699,
2702,2766,2852,2882,2892,2953,2970,3054,3116,3129,
3136,3155,3262,3284
AGA count: 91
AGG: 205,923,1262,1373,1391,2033,2370,2660,2789,3160
AGG count: 10
AAT: 11,70,90,105,108,127,148,157,161,212,251,259,288,297,
310,377,389,403,437,441,454,459,482,491,496,501,504,
513,557,561,565,572,585,604,621,651,665,712,716,754,
770,825,838,846,850,854,866,931,964,990,1001,1089,
1095,1103,1114,1134,1163,1166,1217,1233,1238,1254,
1324,1359,1364,1460,1463,1518,1563,1614,1637,1640,
1701,1714,1725,1734,1768,1812,1817,1824,1835,1886,
1911,1951,1975,1997,2001,2042,2069,2160,2172,2219,
2237,2243,2270,2275,2279,2292,2342,2349,2384,2395,
2402,2412,2437,2449,2461,2481,2486,2501,2529,2543,
2569,2579,2598,2706,2714,2813,2816,2846,2864,2871,
2913,2978,3000,3015,3023,3031,3045,3083,3144,3167,
3170,3192,3231,3246,3269
AAT count: 137
AAC: 95,280,301,358,369,372,532,625,735,815,858,980,1331,
1444,1470,1544,1609,1663,1795,1855,1943,2094,2118,
2213,2334,2457,2468,2524,2603,2621,2684,2709,2821,
3092,3098,3173,3197
AAC count: 37
GAT: 81,168,198,417,473,647,668,684,701,878,918,1062,1301,
1305,1308,1350,1383,1557,1584,1599,1748,1889,1899,
2136,2313,2409,2475,2565,2640,2676,2928,2934,3039,
3063,3113,3276,3293
GAT count: 37
GAC: 39,429,773,782,1670,1862,1908,2185,2231,2510,2967,
3201
GAC count: 12
TGT: 74,217,246,450,462,675,680,719,790,1022,1045,1073,
1298,1346,1541,1573,1742,1957,2037,2057,2074,2090,
2194,2223,2263,2327,2489,2624,2804,2831,2857,3007,
3068,3150,3176,3303
TGT count: 36
TGC: (0)
CAA: 102,256,345,465,655,871,1266,1279,1512,1521,1972,2303,
2595,2809,2920
CAA count: 15
CAG: 186,1013,1428,1593,1786,1843,2361,3010,3181
CAG count: 9
GAA: 87,201,277,366,609,617,1122,1137,1485,1652,1947,2109,
2316,2478,2514,3287
GAA count: 16
GAG: 316,1491,3279
GAG count: 3
GGT: 804,958,1026,2064,2250,2582,2895,3035
GGT count: 8
GGC: 14,1773
GGC count: 2
GGA: 285,1100
GGA count: 2
GGG: 36
GGG count: 1
CAT: 23,165,425,433,445,582,628,633,687,727,742,745,763,
808,1009,1148,1170,1222,1292,1317,1369,1423,1450,1689,
1709,1738,1808,1873,1969,1984,2103,2106,2149,2165,
2203,2254,2440,2587,2654,2746,2797,2964,3075,3140,
3253
CAT count: 45
CAC: 413,479,690,766,1342,2026,2030,2246,2425,2464,2770,
3079,3147,3186,3250
CAC count: 15
ATT: 266,507,536,546,841,862,911,946,1117,1199,1410,1418,
1432,1447,1495,1507,1526,1625,1698,1745,1764,1964,
1987,2210,2282,2309,2331,2354,2723,2755,2827,2899,
2943,3072,3256,3265
ATT count: 36
ATC: 20,64,151,332,1202,1214,1311,1437,1552,1589,1935,2338,
2345,2415,2657,2667,2792,3205
ATC count: 18
ATA: 410,420,697,903,934,993,1004,1058,1081,1193,1327,1338,
1569,1686,1704,1870,1920,2097,2153,2358,2834,2889
ATA count: 22
CTT: 51,113,361,694,976,2608,2680,3059
CTT count: 8
CTC: 967,1606,1717,1991,2100,2839,2950
CTC count: 7
CTA: 190,1242,1618,1659,1801,2191,2398,2592,2691,2777,2939,
3042,3120
CTA count: 13
CTG: 385,487,834,2763,2842
CTG count: 5
TTA: 67,77,98,130,154,181,394,636,730,811,892,961,1069,
1152,1209,1414,1579,1858,2019,2178,2188,2206,2324,
2434,2534,2572,2611,2629,2974,3003,3109,3126,3132,
3208,3235
TTA count: 35
TTG: 927,1258,1876,2289
TTG count: 4
AAA: 5,8,133,208,320,510,722,1179,1269,1285,1320,1479,1692,
1755,1758,1792,1827,2006,2012,2049,2388,2517,2555,
2614,2874,3238
AAA count: 26
AAG: 1621,2378,2421
AAG count: 3
ATG: 274,313,568,601,949,1534,2139,2860,3019,3227
ATG count: 10
TTT: 84,983,1016,1503,2077,2644,2664,3106,3273
TTT count: 9
TTC: 1387,1846,1930,2126,2234,2266,2381,2492
TTC count: 8
CCT: 342,2727
CCT count: 2
CCC: (0)
CCA: 987
CCA count: 1
CCG: (0)
TCT: (0)
TCC: (0)
TCA: 1019,1230,1560,2295,3048
TCA count: 5
TCG: (0)
AGT: 26,57,263,305,758,776,955,1566,1666,2009,2168,2306,
2687,2824,2867,2946
AGT count: 16
AGC: (0)
ACT: 588,779,2472,2720,2886,2981
ACT count: 6
ACC: 938,3028,3095
ACC count: 3
ACA: 1401
ACA count: 1
ACG: 1779
ACG count: 1
TGG: 1596,2498
TGG count: 2
TAT: 594,1029,1314,1473,1914,2133,2576,3221,3300
TAT count: 9
TAC: 793,818,1924,1954,2917
TAC count: 5
GTT: 476,1272,1896,2931
GTT count: 4
GTC: 1092
GTC count: 1
GTA: (0)
GTG: 2617,3163,3215,3290
GTG count: 4
TAA: 1160,1676,1883,2216,2240
TAA count: 5
TAG: 220
TAG count: 1
TGA: 2749,2780,2849
TGA count: 3
26) Codon Usage Bias:
About: Yellow fever virus strain Trinidad 79A isolate 788379, complete genome (10760bp)
VERSION: AF094612.1
CODONS & LOCATIONS:
GCT: 15,49,134,180,331,348,353,356,463,511,669,884,953,
974,992,1220,1272,1284,1470,1559,1578,1728,1742,1838,
1982,2062,2094,2154,2235,2240,2289,2305,2316,2367,
2488,2575,2847,3039,3207,3287,3393,3417,3492,3506,
3521,3616,3631,3661,3677,3740,3763,3766,3774,3781,
3817,3848,3920,3926,3965,3989,4012,4119,4201,4228,
4241,4300,4313,4345,4398,4435,4438,4483,4499,4517,
4535,4543,4562,4742,4784,4818,4864,4874,4877,4917,
4952,4958,5023,5131,5174,5229,5285,5321,5330,5459,
5495,5642,5684,5699,5816,5851,5867,5881,5942,5945,
6042,6061,6217,6239,6332,6403,6425,6443,6454,6463,
6488,6546,6554,6604,6617,6705,6763,6865,6892,6901,
6956,6998,7033,7171,7174,7185,7213,7237,7285,7364,
7400,7418,7430,7490,7504,7547,7586,7842,7852,7893,
7907,7910,8149,8153,8189,8227,8399,8559,8779,8870,
8959,9022,9073,9131,9171,9206,9245,9464,9574,9586,
9799,9847,9882,9967,9980,9992,10075,10183,10264,10325,
10345,10468,10473,10490,10570,10685,10717
GCT count: 181
GCC: 305,383,417,590,603,652,749,760,896,938,965,1040,1076,
1087,1118,1194,1211,1290,1322,1337,1412,1481,1518,
1601,1618,1688,1691,1709,1945,1955,2039,2199,2204,
2219,2222,2294,2465,2594,2619,2681,2880,3032,3130,
3181,3198,3291,3390,3406,3409,3460,3480,3719,3743,
3798,3810,3821,3833,3870,3947,3955,4004,4094,4140,
4394,4456,4487,4502,4673,4808,5069,5210,5249,5295,
5367,5372,5441,5468,5471,5531,5539,5611,5653,5702,
5717,5804,5828,5875,5917,6010,6029,6053,6098,6208,
6233,6279,6360,6580,6701,6802,6884,6973,6991,7001,
7097,7106,7207,7232,7316,7375,7379,7425,7439,7453,
7493,7501,7524,7632,7769,7884,7962,8309,8349,8465,
8787,8795,8861,8903,8912,9051,9056,9101,9312,9389,
9404,9652,9672,9677,9695,9733,9766,9826,9831,9902,
9906,9917,9923,10217,10226,10358,10439,10462,10499,
10564,10658
GCC count: 154
GCA: 27,37,54,100,442,558,564,570,722,726,766,793,829,875,
912,922,981,1018,1051,1160,1200,1248,1254,1278,1308,
1316,1394,1402,1417,1525,1624,1657,1684,1754,1821,
1872,1920,1933,1962,2000,2013,2140,2400,2478,2579,
2644,2661,2666,2722,2785,2963,3008,3104,3259,3318,
3399,3472,3543,3554,3592,3626,3640,3688,3830,3858,
3890,3938,4072,4148,4157,4205,4208,4232,4277,4409,
4647,4697,4726,4761,4836,4977,5031,5037,5200,5219,
5235,5337,5463,5483,5486,5501,5513,5626,5660,5687,
5712,5779,5859,5906,5925,5933,5961,6226,6327,6344,
6506,6561,6566,6587,6666,6693,6808,6839,6855,6881,
6897,7020,7048,7074,7221,7273,7276,7289,7446,7473,
7484,7628,7699,7754,7758,7762,7814,7915,7984,8313,
8316,8427,8548,8595,8663,8692,8726,8820,8840,8858,
8962,8973,9041,9165,9209,9261,9272,9332,9338,9448,
9509,9515,9581,9595,9730,9810,9912,10023,10120,10481,
10486,10708,10729
GCA count: 168
GCG: 93,153,246,493,1139,1244,1532,1638,1997,2190,2348,
2450,2496,2949,3011,3303,3363,3731,3867,4308,4373,
4383,4681,4871,5340,5838,5845,6111,6309,6446,6686,
6708,6732,7311,7570,7601,7643,7796,7837,7887,8244,
8371,8588,8591,8741,9080,9233,9623,10188,10514
GCG count: 50
CGT: 83,87,128,691,856,931,2123,2719,2883,3613,4024,4891,
4900,5062,5189,5302,6037,6211,6222,6260,6451,7015,
7745,8091,8119,8299,8404,10253,10585
CGT count: 29
CGC: 4163,9258
CGC count: 2
CGA: 43,167,170,844,926,1231,1435,1669,2698,3144,3243,4175,
4272,4914,4971,5124,5772,6252,6799,6889,7066,7726,
8212,8849,8908,9425,9428,9637,9658,9844,10035,10259,
10454
CGA count: 33
CGG: 474,538,1750,2193,2259,2280,2774,2894,2931,3019,3193,
3247,3332,3357,3637,3778,3803,4948,5008,5047,5222,
5595,6318,6633,8097,8981,9083,9445,9598,10065,10338,
10379,10393,10405,10560,10601,10671,10695
CGG count: 38
AGA: 104,114,227,242,297,315,341,374,395,498,503,607,644,
655,687,695,743,786,796,815,840,848,1054,1108,1179,
1207,1225,1368,1374,1423,1443,1563,1573,1592,1649,
1653,1700,1717,1896,1965,2089,2116,2146,2178,2215,
2378,2481,2485,2500,2519,2560,2563,2605,2649,2657,
2673,2733,2745,2768,2799,2811,2838,2857,2875,2983,
3027,3109,3163,3185,3240,3271,3279,3283,3347,3511,
3578,3699,3715,3755,3843,3998,4050,4077,4251,4257,
4333,4341,4366,4369,4377,4447,4559,4568,4605,4736,
4764,4798,4849,4855,4887,4905,4942,5011,5079,5095,
5104,5116,5136,5145,5181,5186,5225,5345,5474,5492,
5681,5724,5757,5761,5784,5969,5981,5989,6022,6083,
6147,6152,6168,6182,6249,6294,6348,6396,6502,6674,
6826,6906,6916,6933,6936,7149,7293,7320,7389,7392,
7617,7674,7805,7955,7968,8041,8080,8104,8123,8140,
8201,8363,8395,8436,8440,8461,8473,8484,8657,8696,
8707,8723,8754,8798,8805,8813,8830,8881,8887,8898,
8920,8950,9011,9015,9018,9028,9197,9268,9294,9360,
9383,9435,9503,9519,9547,9608,9617,9634,9710,9759,
9835,9857,10069,10091,10128,10141,10148,10170,10177,
10278,10310,10373,10400,10421,10443,10547,10556,10594,
10598,10609,10616,10621,10667,10722
AGA count: 219
AGG: 23,138,253,362,410,531,648,734,737,746,860,998,1011,
1024,1142,1234,1303,1359,1408,1476,1521,1605,1722,
1760,1770,1851,1951,2070,2113,2161,2245,2269,2301,
2334,2413,2440,2458,2608,2691,2749,2830,2834,2870,
3117,3234,3295,3572,3582,3607,3622,3712,3760,3785,
3932,3993,4036,4059,4178,4197,4248,4285,4319,4423,
4452,4467,4556,4565,4614,4632,4684,4701,4705,4794,
4882,4931,4984,5003,5085,5091,5098,5140,5258,5280,
5387,5405,5498,5623,5744,5893,5897,5901,5914,5951,
5954,6078,6118,6158,6194,6285,6365,6380,6430,6434,
6437,6496,6540,6551,6805,6815,6994,7131,7225,7298,
7359,7498,7561,7721,7737,7774,7779,7823,7858,7862,
7920,7939,8016,8114,8181,8234,8237,8258,8273,8360,
8445,8477,8540,8581,8649,8730,8750,8774,8826,8954,
9045,9120,9137,9148,9151,9154,9184,9291,9394,9397,
9439,9614,9665,9705,9714,9742,9804,9815,9840,9863,
9874,9894,9956,10018,10048,10080,10214,10275,10509,
10630,10661,10698
AGG count: 175
AAT: 5,18,40,74,80,158,196,217,328,451,460,518,613,618,
632,773,801,1157,1241,1326,1341,1398,1515,1778,1830,
1867,1882,2006,2048,2158,2272,2389,2584,2624,2678,
2903,2973,3074,3172,3190,3215,3339,3370,3381,3403,
3454,3463,3514,3707,3913,3917,3944,4009,4193,4288,
4617,4639,4720,4757,4934,4945,5128,5275,5307,5504,
5518,5556,5570,5690,5821,6026,6058,6091,6121,6197,
6302,6411,6574,6595,6637,6682,6697,6760,6943,7030,
7042,7093,7168,7190,7195,7264,7340,7372,7535,7577,
7607,7646,7685,7979,8052,8145,8223,8276,8290,8416,
8493,8525,8603,9116,9177,9349,9495,9558,9726,9749,
10132,10204,10211,10281,10355,10365,10638
AAT count: 122
AAC: 60,145,191,201,208,213,224,278,309,414,544,574,578,
623,863,1027,1432,1528,1547,1677,1738,1784,1787,1797,
1903,2030,2044,2075,2196,2321,2329,2372,2381,2471,
2540,2752,2891,3046,3151,3343,3469,3646,3666,3704,
3887,4128,4419,4623,4660,4911,5000,5054,5109,5149,
5380,5397,5401,5414,5618,5741,5749,5787,5831,5972,
5978,6071,6127,6186,6288,6351,6471,6738,6830,6910,
7198,7345,7395,7450,7517,7624,7654,7680,7971,8000,
8023,8168,8217,8248,8261,8336,8341,8377,8531,8575,
8616,8677,8746,8771,8937,8967,8996,9143,9288,9302,
9327,9470,9482,9537,9692,9792,9878,9898,9926,10027,
10088,10102,10106,10109,10165,10232,10297,10335,10370,
10376,10388,10520,10634,10747,10754
AAC count: 129
GAT: 70,391,399,428,469,490,665,805,934,1001,1124,1184,
1364,1457,1582,1930,1975,1985,2051,2054,2065,2228,
2326,2404,2419,2425,2453,2528,2669,2726,2777,2990,
2994,3055,3085,3088,3228,3256,3307,3314,3326,3431,
3547,3550,3656,3736,3862,4294,4297,4325,4403,4474,
4577,4771,4839,4844,4867,5017,5119,5159,5203,5357,
5425,5435,5453,5524,5552,5585,5635,5855,5888,5984,
6161,6257,6374,6512,6577,6781,6793,6977,7057,7135,
7204,7334,7466,7742,7748,7867,7995,8027,8132,8204,
8254,8356,8488,8945,9001,9108,9193,9215,9236,9249,
9281,9284,9343,9413,9499,9526,9554,9752,9886,9889,
9940,10057,10099,10151,10191,10198,10322,10382,10740
GAT count: 121
GAC: 110,234,286,335,436,484,523,659,716,755,808,880,889,
919,995,1082,1097,1111,1128,1187,1238,1538,1589,1612,
1781,1809,1843,1855,1877,1907,1988,2110,2386,2522,
2531,2633,2705,2960,3079,3136,3298,3585,3910,3973,
4123,4236,4463,4477,4589,4964,5051,5527,5545,5630,
5645,5792,5810,5863,6068,6164,6203,6305,6392,6479,
6592,6621,6628,6862,6920,6983,7006,7127,7352,7539,
7558,7639,7694,7784,7810,7871,7958,8057,8072,8165,
8422,8448,8456,8506,8522,8528,8623,8636,8668,8672,
8688,8717,9200,9225,9239,9254,9275,9352,9431,9457,
9568,9605,9662,9959,10060,10124,10173,10207,10272,
10289,10307,10328,10495,10502,10534,10646,10655,10732
GAC count: 122
TGT: 10,120,186,273,321,402,439,626,674,713,904,1061,1069,
1132,1149,1174,1312,1334,1353,1384,1405,1464,1644,
1666,1813,1833,1891,1924,1927,2169,2283,2433,2569,
2615,2652,2713,2716,2737,2818,2937,2952,2987,3122,
3323,3386,3412,3437,3597,3723,3814,3873,3902,3969,
3979,4019,4143,4471,4552,4584,4710,4729,4750,4804,
4920,4996,5044,5242,5263,5364,5391,5410,5728,5878,
5884,6200,6269,6371,6384,6460,6523,6654,6678,6720,
6775,6790,7011,7024,7080,7086,7217,7229,7302,7327,
7435,7443,7477,7591,7689,7732,7846,7880,7898,8067,
8137,8156,8174,8184,8320,8332,8431,8555,8566,8608,
8700,8767,8817,8978,8987,8991,9069,9190,9378,9541,
9551,9602,9641,9681,9699,9763,9773,9820,9867,9930,
9972,10083,10318,10434,10703
TGT count: 138
TGC: 1319,2462,3489,5216,5232,5709,6357,6400
TGC count: 8
CAA: 344,836,1057,1390,1450,1767,1864,2143,2730,3588,4432,
4897,4908,5591,5948,6015,6661,6812,6833,6913,7060,
7267,7281,7849,7936,8020,8231,8571,8823,8925,9322,
9335,9364,9738,9952,10180,10426,10751
CAA count: 38
CAG: 561,637,1379,1467,1595,1971,2025,2135,2628,2912,3156,
3201,3672,3750,4188,4414,4655,4788,5318,5605,6132,
6520,6670,6873,7100,7110,7180,7703,8046,8891,9561,
9571,10072,10711
CAG count: 34
GAA: 142,291,325,541,587,770,824,909,1228,1300,1429,1500,
1568,1632,1735,1939,2057,2151,2185,2266,2572,2590,
2611,2844,2862,3016,3060,3068,3336,3367,3466,3476,
3560,3877,4352,4386,4825,4832,5348,5420,5438,5507,
5576,5721,6172,6275,6314,6322,6377,6988,7153,7469,
7621,7650,7664,8111,8382,8761,8801,9007,9037,9048,
9140,9161,9373,9400,9487,9512,10045,10138,10664,10743
GAA count: 72
GAG: 174,480,681,987,1136,1348,1484,1627,1824,2921,2934,
3101,3125,3166,3806,4224,4427,4692,5213,6050,6466,
6584,6729,6967,7596,7709,7890,7927,8368,8498,9092,
9098,9578,9628,9964,10052,10478
GAG count: 37
GGT: 32,125,163,318,379,386,507,600,707,729,779,821,852,
946,959,1015,1033,1494,1544,1805,1913,1936,2020,2312,
2362,2410,2504,2535,2701,2780,2792,2807,3005,3262,
3425,3441,3499,3533,3538,3565,3601,3634,3684,3838,
3854,4027,4039,4090,4172,4214,4268,4303,4328,4349,
4492,4528,4539,4814,4894,5014,5477,5573,5664,5731,
5734,6045,6086,6094,6143,6242,6640,6784,6787,6868,
6953,7162,7177,7245,7330,7661,7792,7827,7933,8161,
8514,8599,8941,9063,9218,9221,9370,9451,9523,9646,
9823,9933,10009,10032,10135,10243,10525,10588,10591,
10612,10677
GGT count: 105
GGC: 5958
GGC count: 1
GGA: 221,812,1048,1420,2796,2928,3329,3451,3795,3827,4363,
4739,4852,5171,5178,5299,5825,5842,6341,6440,6930,
7514,7614,7671,7855,7952,8306,8867,8878,8895,9077,
9346,9860
GGA count: 33
GGG: 457,1275,1641,1714,2212,2344,2447,3434,4316,4496,4574,
4669,4937,5966,6338,7337,7573,7635,7677,7876,8107,
8934,9004,9756,9854
GGG count: 25
CAT: 64,425,702,776,892,916,1006,1092,1345,1438,1555,1661,
1802,1916,2035,2098,2104,2182,2209,2276,2338,2341,
2356,2395,2422,2512,2550,2756,2760,2851,2854,2956,
2980,3035,3065,3140,3178,3218,3310,3422,3448,3518,
3695,3769,3961,4033,4069,4107,4359,4508,4512,4609,
4776,4821,5152,5165,5353,5428,5431,5444,5564,5599,
5673,5677,5695,5994,6387,6517,6601,6643,6748,6766,
6820,6847,6948,7123,7140,7144,7165,7252,7307,7461,
7543,7555,7567,7729,7832,7975,8005,8085,8088,8094,
8193,8197,8285,8325,8503,8631,8758,8855,9125,9307,
9317,9409,9418,9475,9530,9655,9686,9718,9788,9850,
9975,10005,10040,10117,10238,10246,10303,10416,10649
CAT count: 121
CAC: 301,977,1066,1104,1168,1214,1330,1489,1509,1774,2079,
2128,2173,2254,2941,2944,2977,3092,3212,3267,3352,
4046,4063,4099,4597,4715,4732,5254,5291,5312,5333,
5489,5535,5656,6032,6102,6533,6742,6960,7052,7241,
7248,7945,8033,8101,8281,8407,8653,8736,9265,9478,
9533,9589,9779,9782,9936,10000,10014,10113,10194,10250,
10412,10450,10541,10575,10757
CAC count: 66
ATT: 96,256,281,445,547,581,662,752,1121,1260,1294,1672,
2308,2515,2553,2684,2708,2771,3049,3374,4505,4592,
4651,5800,6003,6416,6769,6851,7355,7942,8075,8612,
8833,8837,8864,9945,10314,10652
ATT count: 38
ATC: 260,526,1100,1697,1858,2003,2468,2507,2556,2999,3221,
3444,3483,3882,3905,3950,4184,4626,4968,4987,5929,
6571,8344,8733,9087,9442,9721,10161,10235,10256,10349,
10361
ATC count: 32
ATA: 57,554,3360,3726,4082,5764,5813,5909,6756,7069,8468,
8626,9059,9066,9187,9355,10284,10725
ATA count: 18
CTT: 237,268,487,868,949,1257,1609,1732,1745,1790,1818,
1887,1991,2082,2251,2598,2639,2687,2802,2907,2968,
3097,3252,3528,3619,3653,4001,4015,4043,4110,4131,
4261,4265,4520,4532,4663,4666,4779,4961,4980,5059,
5156,5206,5267,5521,5669,5706,5752,5834,5921,6064,
6178,6298,6610,6646,6725,6772,6925,6940,6980,7115,
7119,7382,7412,7415,7456,7529,7949,8011,8063,8129,
8511,8544,8682,9278,9298,9769,10158,10735
CTT count: 79
CTC: 406,550,610,833,970,1036,1446,1680,1847,2436,2764,
2824,3042,3650,3897,4054,4086,4103,4337,4480,5195,
5238,5326,5938,6354,6530,6657,6751,7036,7083,7421,
7552,7801,8265,8269,8411,8578,9689,9870,9988,10409,
10447,10505,10537,10579,10626,10681,10692
CTC count: 48
CTA: 359,515,941,1217,1861,3112,3569,3791,3984,4217,4523,
4602,4992,5998,6106,7403,7481,7582,7610,7903,8296,
8536,8551,8563,9229,10331
CTA count: 26
CTG: 149,231,1203,1263,1706,2899,3225,3378,3496,4115,4154,
4443,5082,5271,5614,5639,5738,6006,6155,6282,6408,
6485,6537,6614,6964,7089,7260,7368,7788,7991,8453,
8792,9104,9113,9203,9467,9611,10222,10530
CTG count: 39
TTA: 369,1153,1506,1552,1764,2131,2740,3204,4642,4923,5383,
5796,5871,7256,7820,8328,8388,8518,8703,9460
TTA count: 20
TTG: 67,584,782,984,1030,1356,1426,2085,2262,2286,2475,
2601,2925,3002,3052,3147,3159,3824,3851,4136,4281,
4753,4829,5246,5450,6114,6214,6245,6970,7658,7712,
7766,8241,8481,8685,9033,9168,10269
TTG count: 38
AAA: 131,204,294,365,1145,1948,2009,2164,2694,3022,3575,
3935,5101,5648,5776,6491,6689,8710,8843,10385,10429,
10517,10552
AAA count: 23
AAG: 593,710,1190,1503,1725,2492,2543,4926,6236,6263,6419,
6543,7817,7923,7987,8385,8584,8639,8970,9421
AAG count: 20
ATG: 678,818,1073,1281,1497,1621,1757,2359,2841,3082,3557,
4459,4635,5034,6074,6291,6509,7386,7965,8660,9212,
9506,9620,9807,10096,10144,10396
ATG count: 27
TTT: 77,263,454,871,1454,1541,2016,2297,2429,2886,3691,
3746,3894,4151,4244,4356,4547,5162,5192,5288,5447,
6135,6272,6422,6527,6649,7706,9095,9984,10458,10688,
10714
TTT count: 32
TTC: 177,249,421,432,1164,1968,2119,2231,3237,4066,4390,
4745,5559,6482,6842,8171,8208,8619,8783,8930,9564,
9668,9785,9948,9996
TTC count: 25
CCT: 183,448,535,901,1045,1079,1615,1959,2407,2815,3396,
3958,4291,4801,5041,5168,5377,6140,6335,6476,6778,
6859,8038,8353,8392,8875,9181,10294
CCT count: 28
CCC: 629,789,1473,1900,2827,4677,5767,5975,6796,7324,8809,
10544
CCC count: 12
CCA: 338,641,1197,1371,4861,5113,5456,6823,7521,8917,9386,
9702,10582
CCA count: 13
CCG: 962,9649
CCG count: 2
TCT: 2525,3929,4581,7210,7668,8303,10606
TCT count: 7
TCC: 1461,2566,2636,2867,3525,5066,7039,8374,9134,9492,
9776,10155,10229,10567
TCC count: 14
TCA: 699,719,740,1171,3669,3941,4380,5361,5567,6745,7103,
7487,9544,9909
TCA count: 14
TCG: (0)
AGT: 1,1114,1585,1942,1978,2416,2443,2587,3274,3428,3610,
3643,4181,4571,4687,4767,4858,5510,5549,5848,6175,
6190,6229,6457,6598,6877,7063,7201,7348,7564,8251,
8713,8764,8852,9157,9367,9454,10300,10641,10674
AGT count: 40
AGC: 1251,7270
AGC count: 2
ACT: 107,567,597,1694,1910,2353,2547,3133,4211,5807,6625,
8984,10465
ACT count: 13
ACC: 3788,3976,4160,5602,6558,7077,8060,8720,9242
ACC count: 9
ACA: 117,1794,1994,2375,3231,3503,5315,8884,9796
ACA count: 9
ACG: 5028,7751
ACG count: 2
TGG: 684,1021,1297,1512,1598,2107,2225,3486,3604,3681,4221,
4254,4629,5020,5394,5417,5480,5542,6266,6368,6499,
6735,7532,7930,8220,8419,9128,9631,9746,10201
TGG count: 30
TAT: 1387,2101,2789,4030,4811,9920
TAT count: 6
TAC: 763,7027,7604,8008,9174
TAC count: 5
GTT: 46,466,956,2248,2821,3175,3923,5588,6607,7045,8126
GTT count: 11
GTC: 2392,4955,8030,8846,9025
GTC count: 5
GTA: 1703,3071,8293
GTA count: 3
GTG: 477,1287,1535,1635,4322,4406,4620,4723,4974,6018,6836,
8177,10341
GTG count: 13
TAA: 312,4791,6124
TAA count: 3
TAG: 3457
TAG count: 1
TGA: 90,1827,3169,5088,5608,8049,9592,10352
TGA count: 8
27) Codon Usage Bias:
About: Aichi virus, complete genome (8251bp)
VERSION: NC_001918.1
CODONS & LOCATIONS:
GCT: 50,128,141,179,255,277,280,339,390,413,481,487,664,
716,742,746,749,755,767,798,808,935,945,954,1006,1088,
1153,1403,1428,1463,1487,1505,1543,1598,1631,1655,
1791,1806,1925,1946,2010,2081,2093,2097,2144,2227,
2274,2319,2387,2467,2567,2573,2658,2663,2691,2702,
2771,2849,2854,2868,2896,3062,3156,3160,3182,3203,
3244,3272,3280,3288,3302,3322,3327,3361,3374,3418,
3455,3565,3595,3623,3643,3651,3892,3983,4047,4080,
4130,4133,4150,4244,4301,4304,4322,4353,4370,4409,
4444,4461,4482,4547,4669,4825,4850,4902,5087,5099,
5123,5246,5382,5393,5625,5766,5873,5892,5909,5913,
5957,6050,6123,6141,6297,6350,6475,6524,6626,6666,
6716,6772,6827,6830,6833,6938,6966,7031,7106,7142,
7145,7157,7166,7177,7328,7343,7361,7404,7572,7610,
7746,7904,7989,7993,8002,8006,8042,8189
GCT count: 154
GCC: 211,217,239,265,343,403,425,437,451,490,508,580,586,
612,623,658,764,870,972,1109,1139,1280,1292,1311,1342,
1372,1454,1457,1475,1508,1517,1520,1529,1551,1556,
1559,1574,1613,1670,1682,1830,1949,2024,2030,2057,
2069,2201,2327,2351,2381,2391,2420,2438,2450,2477,
2485,2498,2506,2527,2531,2538,2585,2636,2639,2676,
2679,2705,2774,2915,2927,2990,3079,3163,3353,3368,
3386,3411,3458,3509,3561,3659,3677,3690,3725,3749,
3767,3770,3828,3848,3863,3878,3923,4019,4091,4106,
4115,4124,4139,4190,4247,4278,4325,4337,4427,4529,
4538,4565,4604,4617,4630,4730,4742,4749,4775,4793,
4802,4905,4925,4934,4944,4991,5013,5029,5159,5273,
5294,5362,5375,5403,5443,5462,5504,5544,5651,5667,
5738,5754,5775,5786,5941,5960,5969,5992,6033,6200,
6218,6276,6308,6353,6443,6513,6554,6576,6593,6637,
6683,6692,6741,6808,6814,6890,6918,6930,7170,7277,
7422,7490,7538,7695,7869,7877,7907,7935,7952,8009,
8032,8064,8112,8120,8184,8221
GCC count: 181
GCA: 84,289,368,456,460,628,719,774,892,975,1066,1118,1219,
1224,1254,1335,1451,1618,1626,1743,1802,1815,1819,
1895,2136,2335,2367,2668,2728,2935,2939,2951,2980,
3026,3076,3084,3174,3213,3666,3741,3760,3823,3855,
3873,3900,3914,3999,4121,4158,4283,4649,4691,4697,
4704,4970,5007,5067,5073,5200,5221,5313,5673,5746,
5792,5841,5859,6060,6093,6232,6369,6424,6537,6670,
6729,6745,6789,7204,7222,7242,7377,7443,7685,7813,
7914,7930,8038,8134,8168,8205
GCA count: 89
GCG: 152,271,349,406,518,593,927,1135,1145,1149,1359,1537,
1737,1788,1921,1980,1987,2363,2460,2519,2623,2735,
2740,2921,3059,3177,3254,3275,3305,3313,3437,3728,
3734,3776,3817,3903,4059,4165,4275,4317,4419,5116,
5236,5371,5378,5406,5416,5603,5634,5690,5720,6292,
6428,6446,6465,6533,6543,6642,6753,6795,6935,6973,
7210,7218,7232,7284,7395,7586,7831,7887,7924,8211
GCG count: 72
CGT: 36,131,163,245,285,362,532,873,1261,1273,1327,1395,
1918,1990,2002,2205,2211,2293,2417,2554,2686,2755,
2764,2833,2932,2968,3259,3285,3294,3814,3838,4042,
4255,4363,4447,4516,4550,4624,4708,4807,5038,5140,
5197,5263,5338,5425,5552,5615,6010,6020,6076,6112,
6167,6412,6415,6520,6649,6799,7009,7066,7135,7162,
7252,7600,7713,7753,7806
CGT count: 67
CGC: 1460,2348,3408,3820,6440
CGC count: 5
CGA: 158,734,886,889,1380,1480,1492,1501,1708,2187,2524,
2845,2972,3013,3022,3094,3208,3229,3616,3634,3784,
3796,3799,3868,3928,3937,3955,4198,4267,4414,4684,
4711,4813,5134,5176,5209,5302,5359,5368,5385,5399,
5590,5620,5686,6085,6211,6376,6454,6540,6733,6757,
6823,6988,7021,7138,7195,7303,7456,7597,7719,7762,
7801,7810,7927
CGA count: 64
CGG: 14,28,57,68,81,148,538,542,644,676,706,725,1128,1230,
1246,1285,1299,1356,1365,1467,1645,1726,2084,2311,
2374,2542,2626,2743,2902,3040,3055,3103,3265,3529,
3574,3803,4096,4102,4507,4646,4687,4768,4855,5056,
5187,5218,5229,5479,5538,5678,5881,6097,6192,6241,
6304,6383,6406,6433,6483,6496,6656,6688,6805,6817,
6999,7059,7183,7225,7384,7399,7448,7465,7480,7591,
7614,7643,7758,7818,7945,8105,8151,8162,8197
CGG count: 83
AGA: 314,469,558,913,1000,1122,1933,2343,3016,3034,3051,
3121,3885,4209,4221,4381,4636,4675,4725,4779,4783,
4837,4863,5016,5307,5663,5982,6003,6108,6228,6504,
6705,7044,7054,7097,7130,7249,7387,7656,7769,7840,
7849,7896,8054,8148
AGA count: 45
AGG: 71,182,208,321,472,504,570,617,900,930,960,1105,1131,
1315,1368,1776,2223,2359,2394,2454,3250,3441,3537,
3547,3858,4170,4251,4397,4666,4929,5020,5232,5310,
5331,5670,5699,5934,5946,6036,6285,6457,6750,6882,
6915,7086,7110,7119,7296,7698,8020,8218
AGG count: 51
AAT: 74,356,396,620,667,693,896,1026,1083,1470,1498,1577,
1811,1836,1868,1976,2123,2180,2240,2435,2958,3217,
3235,3239,3316,3341,3415,3958,4062,4099,4263,4286,
4349,4554,4574,4611,4737,4819,4890,4911,4938,5010,
5076,5249,5290,5435,5459,5487,5493,5642,5704,5715,
5815,6040,6071,6247,6342,6580,6588,6606,7036,7472,
7822,7997
AAT count: 64
AAC: 60,114,171,175,429,493,501,522,583,602,818,824,854,
939,966,983,1045,1161,1169,1208,1215,1238,1250,1265,
1306,1386,1411,1446,1570,1584,1604,1651,1703,1713,
1722,1796,1958,2006,2077,2090,2397,2631,2712,2746,
2768,2779,2810,2824,2837,2840,2891,2984,3004,3044,
3068,3107,3129,3137,3335,3347,3402,3425,3554,3587,
3731,3738,3882,3945,3987,3993,4025,4028,4073,4205,
4217,4238,4452,4489,4659,4797,4866,4964,4979,5001,
5034,5104,5194,5258,5351,5468,5482,5509,5534,5582,
5694,5795,5798,5811,5824,5844,5931,5949,5985,6006,
6068,6104,6171,6380,6603,6653,6708,6711,6783,6885,
6901,6908,6953,6996,7017,7040,7092,7102,7116,7505,
7517,7520,7548,7617,7659,7688,7743,7958,7983,8024,
8201,8231,8240
AAC count: 137
GAT: 134,549,597,651,803,1013,1019,1319,1422,1757,2977,
3268,3754,3907,4193,4230,4600,4717,4762,4877,5225,
5419,5549,5723,5726,6488,6546,6942,7174,7325,7462,
7556,7792,7835,8013
GAT count: 35
GAC: 155,794,1058,1079,1345,1547,1642,1825,1862,1873,1999,
2087,2193,2297,2512,2578,3065,3308,3344,3791,3976,
4201,4310,4373,4406,4532,4757,5128,5213,5240,5450,
5555,5566,5600,5611,6203,6327,6392,6398,6764,6836,
6923,7122,7126,7261,7310,7364,7796,7890,8089,8214
GAC count: 51
TGT: 64,123,259,294,352,379,385,448,475,515,566,577,590,
670,703,739,787,878,923,1690,1752,1852,1953,1971,2101,
2113,2284,2408,2599,2872,3364,3613,3787,4031,4234,
4291,4389,4401,4423,4471,4497,4526,4620,4640,5165,
5284,5608,5637,5758,5896,5919,6082,6117,6256,6334,
6364,6419,6462,6478,6616,6660,6700,7005,7319,7357,
7452,7484,7526,7765,7789,7852,8128,8243
TGT count: 73
TGC: 4701
TGC count: 1
CAA: 422,850,1115,1258,1392,1435,1525,1994,2888,2965,3247,
3673,3757,4003,4241,4330,4378,4608,4672,4681,4967,
4975,5422,5783,5954,5989,5995,6346,6646,6724,6736,
7028,7315,7939
CAA count: 34
CAG: 252,512,881,1761,1885,2015,2502,2563,2618,3447,3744,
3911,4015,4155,4162,4790,5026,5528,6029,6870,8028
CAG count: 21
GAA: 262,949,1383,1513,1540,2054,2132,2732,2821,3134,4144,
4643,5735,5833,5923,6629,7727,7918
GAA count: 18
GAG: 409,2412,2471,2534,2786,4010,5168,5439,6236,6528,7002,
7646
GAG count: 12
GGT: 18,23,111,167,298,498,553,631,1032,1322,1440,1749,
1770,2047,2489,2683,2884,2954,3170,3472,3543,3655,
3682,3919,3941,4721,4915,5041,5044,5181,5341,5596,
6151,6991,7187,7238,7672,7675,7749,7827,7855,7911,
8078,8125,8181
GGT count: 45
GGC: 1277,2582,3383,3764,5390,5743,6197,6963
GGC count: 8
GGA: 2027,2208,2340,2761,2830,3584,4571,4734,5587
GGA count: 9
GGG: 205,1443,1495,3534,7207,7468
GGG count: 6
CAT: 44,89,189,226,309,686,712,830,1332,1587,1594,1636,
1731,2021,2044,2066,2116,2164,2443,2494,2515,2590,
2725,2794,2803,2878,2944,3166,3186,3220,3298,3358,
3391,3433,3469,3484,3522,3579,3592,3598,3811,3971,
4051,4366,4501,4519,4522,4822,4843,4873,4882,4894,
4921,5281,5335,5473,5560,5659,5683,5763,5806,5848,
5899,6025,6130,6253,6289,6301,6311,6559,6568,6613,
6896,7150,7154,7192,7201,7367,7408,7417,7435,7459,
7498,7510,7513,7543,7579,7603,7624,7628,7774,7780,
8075,8141
CAT count: 94
CAC: 2,33,100,317,382,443,638,758,770,782,957,988,1156,
1180,1192,1204,1234,1534,1678,1765,1783,1858,1879,
1964,2062,2140,2173,2198,2232,2260,2287,2331,2480,
2642,2653,2695,2722,2752,2791,2860,2863,2909,2995,
3010,3037,3088,3100,3124,3225,3319,3466,3493,3517,
3693,3699,3718,3832,3842,4037,4054,4111,4180,4225,
4357,4393,4438,4544,4561,4587,4627,4745,4829,4885,
4949,4984,5091,5318,5323,5411,5428,5500,5518,5578,
5629,5750,5854,5863,5938,5978,6016,6161,6176,6179,
6184,6250,6260,6268,6317,6322,6563,6583,6622,6802,
6850,6859,6877,7047,7075,7256,7351,7381,7412,7428,
7663,7678,7707,7732,7784,7858,7883,8067,8092,8096,
8175
CAC count: 124
ATT: 2603,3047,4846,5446,5524,7425,7701
ATT count: 7
ATC: 248,464,840,1038,1241,1621,1648,1799,1844,1899,2036,
2072,2269,2279,2377,2546,2570,3512,3626,3851,4118,
4313,4858,4994,5789,5972,6386,6893,6976,7523,8165,
8171
ATC count: 32
ATA: 1048,1362,2749,6436,7300
ATA count: 5
CTT: 8,54,107,137,197,306,325,333,440,525,528,697,791,837,
845,858,862,867,1061,1075,1100,1608,1639,1697,1841,
1908,1915,2033,2104,2250,2266,2304,2370,2611,2650,
2800,2962,3091,3142,3148,3191,3195,3477,3526,3631,
3637,3648,3670,3948,3980,4298,4431,4456,4477,4535,
4655,4678,4754,4953,4957,4988,5084,5108,5120,5173,
5203,5278,5396,5497,5575,5771,5827,5851,5906,6133,
6146,6395,6451,6761,6775,6844,6853,6866,6959,6982,
7078,7267,7270,7334,7338,7348,7370,7632,7636,7640,
7735,8060,8102,8156,8159,8194,8226,8247
CTT count: 103
CTC: 41,93,193,220,230,330,399,535,605,641,815,833,905,
918,993,1054,1091,1094,1142,1166,1177,1188,1196,1211,
1303,1338,1351,1377,1407,1483,1564,1567,1590,1601,
1660,1664,1667,1717,1855,1876,1882,1904,1912,1936,
1939,2039,2120,2126,2167,2219,2237,2244,2253,2315,
2324,2403,2557,2593,2607,2614,2645,2719,2806,2947,
3113,3117,3145,3262,3331,3398,3421,3451,3463,3481,
3496,3503,3568,3571,3604,3608,3619,3696,3702,3713,
3780,3889,3962,3967,4067,4084,4175,4184,4214,4258,
4294,4342,4346,4466,4485,4504,4511,4580,4662,4694,
4834,4840,4897,4918,4961,5051,5081,5096,5146,5152,
5155,5266,5269,5326,5347,5431,5465,5514,5648,5729,
5779,5818,5870,5888,5965,6043,6064,6101,6136,6164,
6188,6224,6264,6271,6359,6373,6493,6550,6572,6609,
6676,6779,6839,6847,7025,7072,7082,7291,7477,7495,
7502,7532,7561,7567,7668,7739,7861,7865,7972,7979,
8072
CTC count: 165
CTA: 372,673,778,1009,1051,1200,1890,2110,2161,2215,2425,
2596,2671,2815,3097,3151,3430,3490,3808,3835,4591,
4594,5047,5143,5454,5490,5571,6127,6156,6208,6597,
7063,7198,7606,7651,7716,7723,7777,7900,7964,7969,
7975,8116,8137,8145
CTA count: 45
CTG: 434,654,996,1003,1041,1269,1419,1942,2464,2783,2818,
2881,4088,4271,4597,5070,5563,5711,5732,5830,6120,
6214,6389,6509,6811,6949,7307,7583,7874
CTG count: 29
TTA: 700,811,7273,7438,8048
TTA count: 5
TTG: 562,1288,1984,3558,3996,4441,7050,7113
TTG count: 8
AAA: 78,274,1069,1414,7691
AAA count: 5
AAG: 118,336,4772,6792
AAG count: 4
ATG: 1822,2758,6911,6926,7089
ATG count: 5
TTT: 683,729,1431,4557,5866,5884,7322,7843,8234
TTT count: 9
TTC: 417,573,689,1172,1398,1847,2018,2263,2474,2549,2875,
2998,3371,3662,4384,5252,5354,6337,6401,6469,6695,
6862,7264,7280,7880,7949,7961,8099
TTC count: 28
CCT: 5,202,942,1029,1746,2051,2184,2301,2447,2699,2918,
3007,3019,3350,3380,3722,3952,4435,4584,5299,5521,
5656,5878,5903,6047,6331,6721,6874,6979,7180,7354,
7553,8178
CCT count: 33
CCC: 96,103,144,214,233,268,301,393,635,827,909,969,1125,
1183,1295,1425,1580,1675,1686,1694,1700,1773,1930,
2107,2158,2170,2176,2247,2257,2290,2356,2428,2431,
2708,2715,2797,2906,2987,3029,3072,3110,3199,3232,
3377,3394,3487,3499,3601,3685,3706,3709,3897,3932,
4070,4492,4541,4765,4786,4870,4998,5060,5063,5112,
5131,5149,5287,5476,5707,5802,5916,6000,6013,6055,
6314,6356,6472,6600,6663,6673,6680,6768,6856,6946,
6969,7012,7214,7246,7374,7391,7620,7681,7955,8208
CCC count: 93
CCA: 186,223,236,1389,1968,2308,3001,3338,3405,3640,4633,
4810,5255,5928,6079,6517,6905,7432,7576,7710,7846,
7893
CCA count: 22
CCG: 346,1734,4077,4941,6090,6634
CCG count: 6
TCT: 761,1016,1035,1097,3506,4187,4307,4474,4568,6820,7535,
8237
TCT count: 12
TCC: 11,478,1023,1348,2400,2560,3444,3990,5023,5162,5531,
5541,5645,5975,6619,7564,7704,7986
TCC count: 18
TCA: 47,359,3291,3773,5191,6501
TCA count: 6
TCG: 2924,4127,8035
TCG count: 3
AGT: 546,709,978,1779,2827,2899,4333,6279,6409,7229,7287,
7921,8016
AGT count: 13
AGC: 4147
AGC count: 1
ACT: 609,1227,3540,8131
ACT count: 4
ACC: 821,1740,1865,1961,2147,2912,3551,4022,4034,4652,5004,
5838,6221,6956,7331,8057
ACC count: 16
ACA: 722,963,5184,6282
ACA count: 4
ACG: 6786
ACG count: 1
TGG: 365,376,648,661,1833,3845,4007,5243
TGG count: 8
TAT: 2129,5206
TAT count: 2
TAC: 1112,2457,5344
TAC count: 3
GTT: 1072,4136,5593,7235,8051
GTT count: 5
GTC: 2857,4577,7529,7942
GTC count: 4
GTA: 679,7069
GTA count: 2
GTG: 484,752,2190,2384,2509,4714,4908,7487,8108
GTG count: 9
TAA: 5365
TAA count: 1
TAG: 4614,8045
TAG count: 2
TGA: 242,4360,4816,5137,5821,6244,6985,7594
TGA count: 8
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