This is an appendix to: Quantum Biology - 11
13) Codon Usage Bias:
About: West Nile virus isolate 2741, complete genome (10975bp)
VERSION: AF206518.2
CODONS & LOCATIONS:
GCT: 1,54,115,126,175,223,256,273,358,374,493,529,532,612,
619,775,879,918,924,940,947,1034,1127,1135,1162,1186,
1204,1213,1247,1259,1310,1485,1630,1715,1729,1741,
1747,1870,1978,2053,2206,2221,2269,2300,2340,2347,
2374,2392,2424,2449,2487,2530,2596,2673,2792,2896,
2906,3010,3066,3084,3320,3386,3395,3416,3434,3505,
3514,3613,3625,3630,3674,3697,3741,3838,3856,3882,
3922,3978,3981,3990,4002,4010,4038,4061,4087,4113,
4118,4123,4162,4165,4228,4260,4269,4311,4321,4324,
4409,4434,4458,4497,4680,4683,4762,5000,5037,5069,
5142,5256,5278,5281,5290,5383,5400,5452,5470,5511,
5623,5728,5839,5950,6078,6112,6168,6231,6235,6253,
6284,6348,6377,6462,6565,6598,6703,6739,6774,6777,
6801,6846,6912,7033,7062,7151,7180,7188,7202,7288,
7301,7342,7428,7447,7521,7541,7772,7854,8122,8175,
8211,8250,8253,8335,8379,8475,8612,8625,8646,8755,
8787,8849,8890,9102,9109,9113,9130,9159,9194,9262,
9274,9278,9301,9319,9327,9333,9336,9378,9418,9421,
9525,9615,9652,9695,9708,9724,9803,9889,9931,9940,
9963,9966,9996,10016,10021,10273,10531,10658,10668,
10833,10839,10942
GCT count: 208
GCC: 99,110,141,185,204,425,433,605,701,796,850,862,934,
956,1062,1099,1169,1297,1306,1366,1429,1467,1687,1753,
1998,2041,2047,2167,2203,2464,2477,2565,2573,2578,
2759,2767,2800,2836,3126,3248,3263,3290,3340,3542,
3562,3595,3609,3868,3872,3940,3985,4129,4206,4235,
4246,4288,4548,4759,4781,4784,4966,5061,5112,5122,
5185,5208,5227,5251,5310,5337,5421,5542,5682,5710,
5717,5870,5956,5959,6052,6096,6222,6372,6388,6436,
6486,6541,6577,6591,6613,6622,6763,6813,6850,6895,
7008,7018,7195,7256,7264,7306,7324,7363,7489,7507,
7564,7577,7753,7789,7998,8187,8216,8226,8261,8372,
8604,8617,8692,8766,8824,8899,8932,9070,9085,9200,
9243,9361,9367,9413,9493,9517,9560,9644,9681,9700,
9860,9907,9952,10003,10009,10223,10240,10246,10493,
10507,10534,10571,10592,10641,10700,10736,10746,10752,
10823,10828,10882,10956,10973
GCC count: 157
GCA: 65,104,197,250,268,412,445,548,559,653,664,689,713,
735,752,788,859,887,897,968,1000,1108,1118,1223,1253,
1274,1283,1321,1401,1438,1451,1462,1546,1625,1695,
1708,1734,1775,1833,1894,1910,1929,1940,1955,2006,
2108,2139,2153,2156,2162,2193,2293,2315,2331,2366,
2407,2445,2481,2643,2659,2749,2824,2942,2972,3062,
3094,3135,3206,3347,3389,3398,3489,3581,3605,3650,
3694,3703,3781,4058,4084,4090,4105,4177,4210,4264,
4396,4477,4540,4688,4699,4743,4802,4848,4851,4866,
4878,4901,5045,5091,5260,5296,5332,5474,5479,5482,
5527,5555,5855,5938,5947,5994,6024,6067,6214,6247,
6412,6492,6517,6547,6666,6677,6822,6831,6886,6892,
6938,6951,6980,7012,7068,7123,7129,7192,7240,7284,
7294,7355,7388,7404,7450,7510,7537,7555,7669,7679,
7745,7780,7802,7818,7835,7840,7936,8010,8136,8178,
8310,8342,8544,8588,8718,8721,8882,8887,8913,8941,
8989,9017,9080,9236,9251,9290,9647,9740,9786,9789,
9884,9893,10072,10220,10232,10255,10291,10416,10685,
10726,10818,10906,10947,10964
GCA count: 189
GCG: 50,134,146,232,307,369,437,581,760,1028,1037,1096,
1145,1165,1262,1856,2615,3028,3149,3193,3323,3362,
3431,3748,3796,3835,3916,4199,4306,4372,4415,4431,
4516,4525,4598,4655,4705,4709,4772,5081,5521,5524,
5851,5911,6132,6250,6421,6669,6718,7045,7144,7237,
7311,7314,7321,7513,7587,7777,7916,7979,8201,8458,
8523,8724,8815,8982,8997,9225,9354,9923,9993,10538,
10574,10664,10676,10692,10743,10776,10806
GCG count: 79
CGT: 501,672,915,1140,1201,1554,1577,1591,1661,1793,2377,
2399,2436,2442,2715,3077,3122,3331,3486,3552,3726,
3785,3966,4192,4251,4329,4675,4908,4917,5439,5725,
5762,5968,5974,5990,6448,6534,6826,7079,7116,7161,
7224,7359,7371,7466,8114,8433,8540,8784,8836,9388,
9435,9764,9918,10058,10120,10182,10250,10603,10879
CGT count: 60
CGC: 2893
CGC count: 1
CGA: 68,77,192,211,260,265,280,518,642,1023,1071,1172,1359,
1691,1989,2623,2670,2882,2993,3202,3258,3282,3864,
3956,4412,4646,4819,4925,5084,5130,5463,5508,5595,
5620,5640,5766,5793,6029,6039,6044,6070,6270,6327,
6344,6755,6900,7147,7164,7483,7761,7767,7860,7875,
8144,8182,8313,8332,8424,8515,8537,8550,8675,8750,
8793,8854,8985,9126,9189,9296,9690,10201,10243
CGA count: 72
CGG: 405,485,718,744,1404,1525,1796,1943,2286,2310,2542,
2774,2864,2947,3217,3302,3716,3999,4050,4254,4830,
4863,4962,5022,5181,5317,5615,5661,5669,5771,5979,
6102,6274,6401,6440,7229,7278,7367,7569,7864,7880,
7884,7986,8103,8149,8299,8715,9054,9063,9105,10047,
10299,10512,10527,10608,10756
CGG count: 56
AGA: 71,86,107,170,286,332,386,391,401,507,539,556,633,
636,685,695,709,747,767,819,901,973,1079,1182,1330,
1344,1444,1491,1500,1574,1654,1658,1722,1813,1820,
2088,2115,2123,2197,2214,2469,2484,2491,2582,2591,
2635,2693,2723,2810,2829,2867,2888,2910,2965,2969,
2996,3017,3131,3164,3220,3233,3270,3317,3357,3378,
3452,3457,3464,3479,3584,3599,3723,3758,3799,3815,
3890,3937,4006,4073,4076,4097,4350,4364,4420,4487,
4501,4589,4776,4904,4913,4922,4956,5138,5156,5213,
5223,5236,5239,5245,5285,5302,5324,5341,5360,5485,
5562,5574,5603,5609,5652,5666,5693,5705,5735,5755,
5789,5820,5876,5901,5907,5914,5928,5963,5983,6036,
6129,6137,6172,6177,6180,6184,6315,6318,6362,6455,
6482,6506,6551,6562,6571,6594,6605,6686,6758,6816,
6837,6915,6920,6926,6955,6971,6987,7083,7337,7377,
7383,7409,7421,7475,7529,7634,7660,7689,7701,7705,
7715,7725,7728,7749,7797,7849,7912,7948,7956,7963,
7995,8042,8065,8106,8133,8243,8284,8389,8430,8484,
8501,8555,8569,8736,8769,8827,8842,8869,8910,8935,
8949,8966,9038,9042,9057,9150,9166,9170,9254,9430,
9454,9459,9464,9564,9575,9623,9633,9637,9663,9744,
9753,9834,9841,9956,9982,9985,10051,10080,10095,10136,
10152,10169,10237,10288,10302,10307,10337,10347,10401,
10469,10483,10524,10598,10651,10680,10787,10794,10799,
10861,10873,10925,10933
AGA count: 247
AGG: 26,93,96,200,241,335,342,396,441,468,473,676,721,770,
802,835,987,1055,1112,1230,1243,1278,1326,1421,1530,
1648,1676,1841,1902,2057,2112,2187,2211,2244,2289,
2334,2383,2415,2603,2607,2666,2690,2729,2732,2873,
2918,2960,3091,3245,3294,3569,3572,3720,3812,4030,
4069,4101,4137,4257,4473,4593,4625,4637,4663,4722,
4755,4811,4814,4833,4874,4932,4953,5101,5146,5197,
5200,5269,5416,5504,5514,5904,6140,6208,6242,6277,
6298,6358,6391,6428,6459,6470,6555,6558,6584,6674,
6690,6699,6750,6962,6968,7650,7674,7738,7792,7815,
7831,7867,7976,8126,8140,8168,8191,8207,8375,8385,
8401,8411,8455,8506,8741,8772,8858,8873,8926,8978,
9074,9177,9180,9183,9323,9364,9532,9543,9549,9588,
9594,9607,9734,9864,9869,9903,10077,10109,10194,10205,
10268,10364,10480,10551,10554,10612,10615,10705,10708,
10773,10781,10844,10849,10855,10930
AGG count: 160
AAT: 38,121,138,207,364,408,490,602,625,963,1087,1192,1301,
1348,1543,1665,1766,1829,1925,2037,2069,2128,2371,
2518,2649,2736,2780,2787,2876,2902,2984,3070,3113,
3156,3177,3214,3502,3511,3707,3712,3852,3876,3907,
4015,4053,4239,4296,4343,4401,4465,4580,4844,4959,
5007,5058,5115,5350,5356,5581,5589,5701,5747,5783,
5832,5986,6116,6161,6309,6609,6768,6804,7110,7329,
7494,8160,8195,8302,8362,8420,8496,8632,8861,8917,
8921,8957,9005,9145,9313,9721,9821,9875,10033,10142,
10172,10387,10391,10398,10405,10461,10473,10645,10760
AAT count: 102
AAC: 8,32,35,42,89,131,295,299,303,314,338,380,460,525,
763,816,838,952,1102,1386,1408,1520,1569,1612,1651,
1679,1845,1848,1995,2023,2050,2075,2120,2175,2328,
2562,2677,2726,2756,2839,2842,2979,3006,3022,3241,
3297,3375,3423,3764,3808,3945,3993,4134,4147,4189,
4196,4347,4368,4450,4572,4749,4895,4928,4944,4992,
5065,5153,5193,5233,5265,5345,5425,5431,5629,5752,
5817,5842,5885,5889,5898,6085,6091,6125,6190,6200,
6304,6322,6587,6841,7041,7093,7233,7462,7552,7560,
7617,7646,7711,7784,7844,8003,8026,8258,8287,8437,
8451,8468,8479,8578,8657,8762,8803,8878,9025,9050,
9209,9347,9499,9511,9578,9761,9768,9808,10006,10092,
10117,10158,10261,10279,10353,10545,10565,10632,10719,
10729,10733,10769,10889,10897,10902,10951
AAC count: 141
GAT: 159,189,277,420,429,477,480,565,572,586,628,780,828,
845,876,1012,1083,1533,1557,1704,2009,2064,2234,2325,
2361,2380,2521,2535,2857,2927,3054,3073,3174,3273,
3372,3472,3517,3522,3621,3664,3828,3898,3927,3930,
4021,4044,4065,4155,4173,4183,4202,4221,4332,4359,
4393,4426,4438,4441,4444,4468,4494,4562,4569,4713,
4767,4870,4881,4884,5026,5031,5107,5126,5170,5368,
5403,5442,5446,5636,5646,5797,5862,5919,6004,6108,
6154,6217,6289,6381,6618,6636,6735,6792,6795,6861,
6903,7074,7199,7351,7431,7500,7893,7904,8021,8053,
8316,8596,8974,9030,9265,9340,9408,9424,9442,9537,
9555,9568,9773,9781,9825,9911,10086,10146,10227,10318,
10340,10581,10922
GAT count: 127
GAC: 4,164,345,351,729,738,784,976,1041,1195,1207,1226,
1240,1265,1288,1382,1506,1513,1537,1560,1606,1887,
1897,1949,2227,2452,2539,2704,2989,3040,3169,3197,
3277,3326,3335,3427,3467,3526,3591,3804,4169,4224,
4273,4279,4299,4375,4609,4642,4671,4789,4971,4978,
5014,5306,5538,5803,5866,5943,6060,6082,6385,6523,
6639,6834,6873,6931,7000,7038,7104,7208,7317,7418,
7518,7623,7719,7897,8083,8098,8276,8367,8414,8665,
8697,8701,8746,8796,9268,9283,9304,9476,9667,9988,
10089,10099,10913
GAC count: 95
TGT: 18,22,80,149,152,179,216,291,510,552,578,646,906,912,
992,1049,1074,1218,1374,1392,1516,1563,1641,1701,1761,
1782,1810,1861,1914,1919,2019,2031,2249,2282,2306,
2318,2354,2357,2461,2494,2507,2612,2700,2712,2850,
2951,3044,3118,3143,3641,3668,3678,3770,3824,3902,
3972,4025,4180,4316,4355,4510,4601,4604,4725,4806,
4825,4887,4937,5163,5274,5364,5375,5435,5679,5688,
5808,5880,6013,6203,6260,6395,6530,6537,6633,6730,
6798,6854,6865,6879,6944,7028,7167,7175,7439,7470,
7545,7601,7606,7806,7924,8031,8057,8077,8080,8095,
8346,8679,8729,8810,8846,8903,9098,9186,9399,9483,
9670,9728,9934,9959,9971,10029,10103,10216,10314,10376,
10394,10425,10451,10457,10587,10626,10629,10765
TGT count: 133
TGC: 1294,3413,7298,10970
TGC count: 4
CAA: 377,656,792,1059,1158,1317,1353,1738,1772,1785,1865,
1875,2142,2184,2278,2547,2569,2742,3238,3496,3953,
3962,4586,4622,4632,4696,4854,4941,5220,5501,5722,
5780,5847,7942,7973,8117,8654,8733,8790,8954,9205,
9393,9584,9600,9731,10155,10282,10637,10886
CAA count: 49
CAG: 46,354,608,1435,1973,2237,2258,2627,3036,3182,3535,
3767,4406,4553,4997,5397,5552,6409,7120,7478,7823,
8339,8357,8490,8520,8532,8609,8643,9657,10163,10370,
10490,10967
CAG count: 33
GAA: 536,1341,1634,1806,1825,1986,2150,2265,2439,2498,2656,
2796,2807,3058,3081,3088,3106,3365,3475,4216,4387,
4860,5098,5293,5732,6334,6355,6443,6479,6514,6683,
6742,6819,7486,7642,7698,8229,8395,8444,8465,8512,
8601,8778,8830,8938,9035,9045,9077,9229,9310,9316,
9402,9591,9831,9915,10258,10498,10836
GAA count: 58
GAG: 324,1093,1396,1594,1669,2504,2527,3312,4080,5051,5449,
5518,6007,6064,6257,6369,6630,6647,6713,6882,7005,
7172,7291,8048,8074,8328,8527,8636,9121,9471,10176,
10326,10520
GAG count: 33
GGT: 622,650,810,855,871,930,1008,1017,1236,1503,1584,1598,
2013,2103,2718,2853,2860,2932,3103,3227,3267,3383,
3440,3445,3549,3587,3687,3729,3777,3969,4047,4506,
4716,4890,5095,5188,5488,5675,5859,6001,6281,6292,
6352,6907,7022,7272,7594,7598,7663,7692,7857,7967,
8163,8264,8280,8325,8349,8628,8640,8807,8896,8970,
9092,9136,9214,9528,9675,9776,9792,9849,9852,9879,
10038,10061,10359,10561,10715,10790,10864
GGT count: 79
GGC: 3738
GGC count: 1
GGA: 682,884,984,997,1426,1622,1726,1750,2640,2784,3255,
3392,4340,4447,4484,4702,4841,5353,5873,5971,6503,
7534,7909,8247,8408,8427,9163,9427,9540,9546,9630,
9687,9758,9838,10149,10852
GGA count: 36
GGG: 1179,1250,1441,2343,2458,2804,3146,3646,3690,3887,
4799,5697,5835,5925,6019,6157,6696,6984,7205,7526,
7591,7666,7686,8269,8272,8963,9000,9247,9343,9467
GGG count: 30
CAT: 417,513,639,824,867,894,1004,1068,1176,1335,1378,1472,
1588,1602,1801,1982,2093,2097,2134,2275,2388,2472,
2511,2586,2599,3000,3251,3681,3744,3819,3959,4152,
4284,4461,4668,4793,5055,5072,5076,5176,5217,5313,
5327,5380,5455,5493,5535,5567,5823,5892,5895,5933,
6055,6075,6150,6263,6339,6465,6498,6509,6642,6663,
6870,7089,7100,7269,7332,7398,7401,7425,7581,7584,
7614,7629,7638,7758,7990,8037,8223,8353,8564,8660,
8670,8688,8865,8992,9219,9372,9438,9747,9797,9811,
9828,9857,9999,10065,10069,10187,10209,10296,10323
CAT count: 101
CAC: 246,504,594,698,725,891,1155,1189,1416,1455,1476,1682,
1718,1779,1906,1935,2016,2078,2131,2178,2217,2253,
2303,2515,2763,2937,2976,3186,3211,3306,3351,3354,
3407,3410,3461,3660,3733,3911,4530,4619,4650,4732,
4986,5003,5160,5391,5413,5460,5549,5585,5649,5658,
5814,6406,6568,7025,7053,7058,7137,7215,7221,7244,
7392,7503,7734,7809,8034,8291,8307,8487,8560,8584,
8685,8799,9010,9154,9381,9486,9507,9712,9816,9845,
9927,9979,10331,10350,10622,10655,10740,10894,10960
CAC count: 91
ATT: 29,253,921,1124,1130,1269,1369,1756,2337,2552,2815,
2820,2921,3050,3948,4276,4291,4378,4519,5203,5532,
6627,6651,6958,6974,7134,7380,8321,8509,9088,10012,
10190,10442,10910
ATT count: 34
ATC: 361,1045,1148,3031,3860,4303,4543,5826,6088,7611,9350,
10264,10276
ATC count: 13
ATA: 1494,3616,4033,5230,5655,6144,6934,7931,10408,10434,
10695
ATA count: 11
CTT: 61,156,228,237,319,348,807,831,981,1338,1581,1619,
1882,1952,2027,2082,2427,2683,2707,2847,3160,3402,
3530,3558,3577,3656,3684,3753,3790,3846,4141,4159,
4481,4738,4822,5558,5598,5713,6048,6432,6495,6520,
6601,6654,6708,6723,6784,6789,6994,7158,7249,7434,
7683,7900,8069,8092,8155,8712,9014,9358,9503,9947,
9975,10937
CTT count: 64
CTC: 454,705,755,1152,1413,1609,1615,2350,2395,2404,2431,
2833,2885,3344,4513,4576,4613,5173,5408,6452,6658,
6780,7107,7141,7183,7442,7573,7708,7827,8089,8295,
8650,8708,9142,9174,9640,9705,9718,10542,10595,10672
CTC count: 41
CTA: 83,544,590,1052,1313,1480,1551,1851,2200,2620,2753,
4126,4659,6120,6415,7260,7654,8061,8220,8705,9258,
9384,9489,9496,10043,10749
CTA count: 26
CTG: 497,842,1105,2147,2322,2558,2956,3100,3190,3224,3637,
3934,4018,4337,4383,4536,4898,4949,5135,5167,5242,
5299,5606,5633,6196,6475,6580,6809,6997,8172,8574,
8759,9118,9133,9514,9612,9937,10113,10212,10558,10712,
10918
CTG count: 42
TTA: 11,329,449,597,669,2171,3285,3653,3773,4692,5040,7086,
8016,8592,9021,10466,10811
TTA count: 17
TTG: 220,959,1673,1711,1744,1789,1837,2159,2231,2240,2261,
2411,2686,2924,3025,3538,3832,4559,4566,4975,6228,
6680,6947,7281,7415,7548,7695,7920,8129,8440,8821,
8893,8906,8945,9233,9307,9620,10125,10477
TTG count: 39
AAA: 383,813,1198,2777,3793,4093,4752,5017,5149,6099,6187,
7065,7113,7657,7722,7887,7945,8398,8833,9066,9678,
10197,10420,10568,10722
AAA count: 25
AAG: 1958,5738,5758,6418,7211,7412,8013,9479,9943,10486,
10515,10577,10814
AAG count: 13
ATG: 310,562,1090,1946,2696,3152,3448,4491,5048,5104,5643,
6032,6574,7620,8392,9626,9872,10139,10343
ATG count: 19
TTT: 58,927,1769,1879,2630,3842,4243,4728,5672,6193,6312,
6693,6726,6991,7071,7252,7497,7870,8198,8818,8960,
9139,9800,10356,10430
TTT count: 25
TTC: 463,521,1447,1961,2034,2296,2420,3545,3700,4144,4453,
4981,5496,5592,6365,6424,6746,8622,9715,9737,10502
TTC count: 21
CCT: 1459,1992,2061,2181,3047,3140,3309,3483,3895,4616,
4838,5388,5922,6295,6858,6876,7050,7097,7218,8111,
8382,8405,8472,9222,9684
CCT count: 25
CCC: 1891,3566,4186,4533,5118,5466,5546,5571,7155,7374,
8417,8839,9239,9287,10026,10548,10619,10802,10876
CCC count: 19
CCA: 692,937,1210,2771,2870,3420,5394,6267,6527,6923,7953,
8547,9522,9750,10055,10584
CCA count: 16
CCG: 6165
CCG count: 1
TCT: 74,457,1020,3879,4110,10689
TCT count: 6
TCC: 1115,3975,5578,5612,5744,7275,7983
TCC count: 7
TCA: 661,2646,2746,3014,3110,3493,3602,3849,5372,6965,6977,
9095,9293,9581
TCA count: 14
TCG: 616,4232
TCG count: 2
AGT: 732,1233,1362,1509,2001,2100,2913,3368,3633,4390,4522,
4628,5010,5088,5774,5953,5997,6225,6330,7126,7347,
7455,7458,7764,7890,7959,8007,8232,8775,9396,9405,
9552,9603,10310,10411,10439,10446,10868
AGT count: 38
AGC: 2190,8929
AGC count: 2
ACT: 1432,2455,2680,4213,4796,6105,6211,6398,6544,7626,
7928,10784,10858
ACT count: 13
ACC: 1540,2555,3996,4735,5321,5777,7395,7742,7939,8086,
9597
ACC count: 11
ACA: 575,741,799,944,1031,1291,3230,4583,5248,6239,6301,
7015,7970,9271,10367
ACA count: 15
ACG: 1256,2044,10661
ACG count: 3
TGG: 283,569,1488,1497,1566,1645,1922,2072,2085,2224,2653,
2899,3003,4989,5034,5626,5800,7812,8448,8462,9197,
9572,9660,10106,10166
TGG count: 25
TAT: 679,3508,5811,6016,8581
TAT count: 5
TAC: 1065,1389,1638,3671,3761,4746,5428,6010,6147,8682,
10373
TAC count: 11
GTT: 909,1121,3097,3437,3555,4041,4423,6771,6941,7731,9060
GTT count: 11
GTC: 118,1698,2272,2879,8152,10285,10648
GTC count: 7
GTA: 14,1356,1932,2739,3919,5786,8781
GTA count: 7
GTG: 1816,2501,2524,2662,3499,4857,6889,8045,10083
GTG count: 9
TAA: 8493,10334
TAA count: 2
TAG: 4556,5685,5741,10454
TAG count: 4
TGA: 167,182,4719,5829,6489,8204,9330,9375,10179
TGA count: 9
14) Codon Usage Bias:
About: Dengue virus type 1 strain 16007 (PDK-13) polyprotein precursor, mRNA, complete cds (10735bp)
VERSION: AF180818.1
CODONS & LOCATIONS:
GCT: 46,50,139,205,239,293,303,367,406,415,418,675,736,
782,815,907,913,1121,1233,1245,1252,1322,1436,1456,
1504,1528,1552,1604,1661,1723,1845,1871,2061,2090,
2103,2320,2329,2525,2769,2780,2965,2975,3005,3354,
3370,3495,3511,3568,3587,3665,3701,3745,3795,3820,
3841,3907,3914,3922,3980,4048,4057,4157,4210,4229,
4240,4269,4274,4298,4411,4438,4528,4685,4711,4722,
4814,5015,5021,5167,5176,5186,5204,5450,5562,5978,
6001,6074,6127,6157,6183,6210,6303,6338,6446,6506,
6544,6560,6583,6627,6730,6775,6881,6884,6902,6910,
6932,7046,7122,7141,7168,7175,7214,7226,7244,7330,
7418,7830,7847,7852,7948,8086,8182,8287,8306,8348,
8551,8792,8890,9015,9221,9259,9263,9280,9393,9532,
9608,9715,9859,9896,9902,10125,10186,10357,10362,10431,
10441,10472,10488,10573,10642,10664,10715
GCT count: 151
GCC: 213,266,421,428,463,594,644,722,741,755,845,863,932,
1172,1209,1283,1588,1994,2150,2171,2552,2597,2711,
2734,2829,2847,2978,3062,3094,3217,3659,3710,3737,
3801,4017,4135,4207,4214,4218,4337,4545,4727,4855,
4892,4898,5009,5041,5138,5153,5236,5304,5309,5325,
5396,5408,5468,5492,5636,5777,5852,5863,5876,5882,
5885,5953,6041,6052,6173,6314,6437,6494,6520,6551,
6644,6668,6679,6695,6742,6824,6873,6938,6959,7028,
7075,7112,7184,7335,7394,7535,7583,7694,7751,8131,
8317,8384,8403,8480,8506,8519,8594,8702,8912,9032,
9176,9244,9254,9419,9488,9599,9688,9748,9753,9782,
9800,9810,9828,9914,9942,9965,10139,10148,10166,10330,
10340,10365,10373,10403,10410,10426,10434,10556,10697
GCC count: 132
GCA: 84,248,281,466,480,484,521,537,639,716,857,954,986,
1012,1037,1094,1113,1239,1378,1418,1667,1675,1709,
1714,1772,1788,1839,1882,1900,1925,1932,1967,2039,
2078,2121,2124,2144,2159,2189,2261,2370,2375,2382,
2417,2448,2472,2509,2549,2564,2864,2991,2996,3087,
3117,3178,3212,3223,3231,3357,3414,3473,3516,3558,
3756,3809,3857,3864,3958,3965,4077,4236,4247,4322,
4430,4442,4501,4565,4581,4597,4614,4669,4917,5027,
5172,5216,5222,5258,5378,5400,5405,5447,5505,5510,
5613,5679,5765,5993,6071,6107,6362,6365,6430,6469,
6653,6756,6779,6821,6953,7010,7034,7043,7157,7204,
7208,7283,7313,7359,7493,7520,7526,7575,7635,7733,
7951,8106,8161,8261,8366,8446,8655,8666,8676,8681,
8751,8789,8801,8834,8843,8972,8987,9011,9164,9310,
9320,9369,9545,9593,9679,9756,9824,9834,9845,9856,
9945,10133,10262,10318,10422,10475,10495,10505,10545,
10548,10632,10676,10688
GCA count: 166
GCG: 147,159,182,323,434,548,611,687,937,942,1023,1102,
1196,1733,2280,2469,2795,2932,3056,4295,4475,4650,
4881,4992,5453,5800,5839,6097,6343,6378,6636,6692,
7154,7241,7381,7481,7922,8136,8188,8538,9465,9552,
9893,10551,10617
GCG count: 45
CGT: 14,56,126,397,625,672,707,712,730,762,967,1218,1222,
1278,1360,1443,1687,1749,2068,2223,2352,2603,2686,
2695,2760,3383,3693,3814,4672,4936,5002,5147,5338,
5737,5842,6117,6121,6256,6537,6805,6916,7300,7768,
8055,8060,8335,8672,8809,8916,8984,9267,9334,9356,
10377,10387,10448
CGT count: 56
CGC: 8652
CGC count: 1
CGA: 21,36,107,122,150,447,452,579,695,698,1144,1149,1214,
1462,1516,1758,1947,2153,2162,2591,2608,2824,2910,
3040,3250,3299,4026,5389,5429,5722,5755,5859,6196,
6214,6296,6346,6478,7083,7270,7309,7690,7740,8028,
8854,9247,9502,9526,9957,10255
CGA count: 49
CGG: 41,117,338,599,648,837,1077,1258,1446,1468,2200,2361,
2424,3400,3742,4053,4264,4791,4824,5112,5484,5656,
5663,5774,5814,6082,7273,7578,7813,7957,8294,8858,
8965,10349,10414,10466
CGG count: 36
AGA: 26,79,114,186,257,296,312,315,348,352,392,460,491,
513,562,619,745,752,792,805,821,885,959,1074,1168,
1186,1192,1229,1309,1317,1372,1395,1402,1483,1507,
1542,1576,1618,1631,1636,1656,1671,1702,1738,1858,
1864,1875,1921,1935,1954,1959,1974,1982,2017,2058,
2112,2182,2452,2506,2538,2692,2805,2842,2861,2884,
3025,3036,3059,3073,3081,3153,3188,3244,3314,3336,
3397,3425,3445,3484,3535,3545,3551,3670,3675,3725,
3770,3835,3972,4105,4128,4290,4318,4357,4366,4383,
4390,4396,4400,4509,4515,4552,4562,4589,4601,4645,
4741,4795,4798,4869,4903,4943,5035,5050,5078,5123,
5126,5195,5250,5265,5286,5342,5411,5502,5521,5531,
5544,5648,5706,5746,5791,5827,5836,5889,5894,5900,
5989,5997,6025,6057,6061,6066,6079,6092,6134,6137,
6178,6200,6246,6261,6274,6280,6284,6288,6317,6355,
6371,6374,6400,6441,6500,6514,6523,6532,6602,6739,
6745,6749,6831,6855,6859,6919,6986,7086,7220,7235,
7288,7294,7368,7571,7603,7616,7642,7659,7685,7699,
7712,7717,7773,7792,7807,7823,7857,7867,7963,7986,
8051,8090,8143,8165,8204,8279,8330,8357,8371,8377,
8392,8406,8546,8625,8638,8729,8744,8756,8771,8839,
8851,8879,8883,8940,8944,8959,9022,9052,9068,9072,
9097,9128,9191,9199,9213,9314,9353,9363,9431,9494,
9539,9556,9632,9637,9738,9763,9785,9815,9878,9887,
9988,9991,10050,10072,10092,10099,10181,10200,10210,
10230,10239,10245,10321,10333,10354,10519,10524,10536,
10596,10603,10608,10648,10655,10692,10700
AGA count: 270
AGG: 199,217,383,386,573,778,829,868,889,973,982,1080,1165,
1264,1312,1383,1496,1501,1693,1705,1753,1819,1915,
1963,2074,2116,2128,2165,2209,2212,2247,2305,2311,
2332,2345,2401,2571,2574,2716,2791,2985,3163,3193,
3262,3331,3391,3435,3441,3481,3505,3638,4124,4147,
4302,4314,4333,4450,4522,4627,4633,4679,4702,4759,
4762,4769,4777,4806,4947,4960,5038,5058,5064,5072,
5107,5162,5229,5243,5278,5283,5479,5526,5587,5623,
5783,5909,5922,5926,5970,6028,6110,6203,6224,6234,
6243,6277,6385,6406,6434,6484,6487,6598,6610,6765,
6793,7068,7096,7446,7456,7505,7558,7561,7564,7568,
7588,7677,7744,7760,7795,7876,7888,7891,7905,8047,
8176,8245,8312,8344,8457,8499,8512,8705,8760,8780,
8901,8956,8977,9094,9100,9140,9148,9297,9305,9378,
9447,9587,9664,9726,9734,9779,9796,9875,10013,10044,
10087,10136,10258,10295,10383,10566,10590,10729
AGG count: 161
AAT: 134,228,286,355,376,591,949,1107,1126,1273,1326,1341,
1391,1450,1534,1545,1741,1765,1785,1798,1908,1987,
2030,2134,2302,2308,2339,2434,2460,2486,2517,2587,
2629,2636,2640,2663,2673,2704,2725,2754,2785,2855,
2928,3099,3139,3145,3296,3340,3348,3421,3463,3523,
3526,3565,3607,3615,3706,3721,3730,3790,3879,3976,
3994,4114,4142,4150,4165,4199,4225,4243,4462,4468,
4663,4841,4954,4973,5089,5092,5179,5212,5239,5351,
5619,5627,5673,5758,5768,5788,5818,5963,6087,6394,
6403,6473,6529,6827,6907,6967,6994,7078,7136,7189,
7249,7252,7259,7317,7339,7342,7404,7461,7477,7546,
7551,7608,7649,7912,7918,7989,8071,8100,8113,8120,
8158,8179,8207,8221,8291,8302,8426,8462,8534,8590,
8686,8819,8823,8907,8927,8952,9047,9226,9271,9293,
9326,9436,9451,9468,9482,9516,9577,9614,9648,9671,
9718,9850,9975,10010,10154,10196,10225,10290,10300,
10307,10312,10392,10624,10704,10709,10722
AAT count: 168
AAC: 65,101,144,155,166,277,362,371,380,530,615,682,690,
748,789,871,919,1043,1047,1051,1065,1088,1133,1159,
1199,1305,1334,1411,1414,1426,1471,1563,1609,1628,
1762,1806,1810,1888,1918,1990,1997,2022,2043,2097,
2235,2257,2348,2438,2612,2625,2645,2739,2748,2834,
2915,3182,3208,3240,3285,3322,3449,3580,3662,3688,
3763,3943,3946,4039,4042,4080,4102,4109,4326,4346,
4375,4512,4716,4787,4821,4832,4849,4852,4911,4940,
4987,4996,5081,5086,5119,5254,5271,5357,5425,5555,
5593,5639,5686,5710,5717,5743,5811,5912,5918,5960,
6227,6230,6291,6411,6420,6455,6616,6770,6847,6890,
6964,7001,7006,7037,7264,7326,7469,7496,7594,7620,
7625,7629,7720,7723,7728,7747,7755,7778,7788,7908,
7937,8035,8079,8096,8146,8154,8169,8192,8242,8249,
8267,8320,8353,8387,8430,8440,8473,8559,8622,8732,
8739,8786,8828,8868,8898,9111,9155,9196,9331,9385,
9398,9410,9423,9475,9573,9604,9654,9768,9820,9899,
9937,9985,10031,10129,10172,10277,10462,10542,10560,
10621,10628,10726
AAC count: 186
GAT: 87,94,97,189,235,472,554,766,841,892,910,998,1152,
1351,1519,1822,1834,2314,2365,2420,2427,2728,2798,
2895,2902,2968,3022,3142,3281,3360,3529,3541,3571,
3629,3634,3682,3848,3871,3890,4065,4074,4202,4277,
4370,4403,4518,4574,4577,4747,4810,4926,5053,5362,
5372,5547,5572,5579,5668,5930,5966,6031,6143,6541,
6556,6640,6664,6688,6721,6790,6808,6837,6868,6982,
7054,7071,7150,7165,7276,7351,7378,7449,7669,7682,
7932,8009,8453,8490,8567,8603,8813,8932,9117,9167,
9180,9203,9206,9337,9341,9427,9581,9674,9804,9862,
9926,9979,10039,10113,10120,10233,10250,10454,10658
GAT count: 112
GAC: 18,400,583,629,661,701,808,962,1058,1226,1300,1459,
1531,1594,1621,1726,1776,1791,1802,2012,2195,2293,
2323,2503,2528,2541,2666,2852,2888,2936,2957,3008,
3043,3303,3491,3574,3612,3619,3759,3852,3886,3931,
4406,4535,4605,4984,5096,5294,5464,5534,5567,5630,
5693,5729,5780,5856,5869,5949,5986,6008,6268,6311,
6329,6389,6427,6452,6568,6580,6814,6943,7024,7059,
7064,7091,7144,7194,7200,7384,7425,7432,7704,7899,
7994,8272,8339,8599,8619,8648,8698,9131,9170,9185,
9233,9283,9359,9375,9560,9584,9617,9881,9982,10219,
10508,10639,10651
GAC count: 105
TGT: 4,162,169,333,507,526,534,567,632,978,1110,1204,1295,
1487,1524,1555,1831,1891,2217,2274,2394,2431,2479,
2578,2582,2619,2954,3257,3274,3277,3290,3365,3404,
3591,3644,3990,4020,4092,4250,4255,4455,4486,4608,
4653,4695,4732,5067,5200,5301,5331,5605,5642,5734,
5804,5872,6237,6465,6564,6657,6673,6784,6798,6877,
7267,7279,7347,7398,7783,7817,7966,8004,8237,8254,
8283,8362,8631,8805,8872,8920,9000,9159,9523,9563,
9695,9772,9908,9996,10057,10109,10368,10437
TGT count: 91
TGC: 1720,5322,7844
TGC count: 3
CAA: 104,195,797,1433,1745,1852,2858,2948,3150,3168,3388,
3457,3718,3825,4034,4622,4719,4735,4837,5018,5610,
5796,5915,6166,6648,6852,7040,7130,7229,7884,8470,
8661,9290,9660,9683,10160,10175,10287
CAA count: 38
CAG: 30,176,210,1347,1842,2025,2414,2522,2679,3270,3429,
3896,5559,5933,6150,6188,6752,9064,9082,9921,10002,
10063,10103,10327,10400,10685
CAG count: 26
GAA: 488,495,669,758,1017,1118,1331,1537,1679,1861,2084,
2131,2141,2232,2299,2443,2466,2489,2560,2660,2719,
2764,2775,2879,3032,3049,3131,3773,4504,4559,4827,
4877,4950,5115,5375,5444,5659,5682,6104,6221,6887,
6998,7223,7255,7322,7612,7708,7798,7873,8068,8327,
8641,8693,8816,8947,9029,9512,9535,9624,10028,10395,
10406,10485,10570
GAA count: 64
GAG: 608,2036,2268,2283,3123,3625,4233,4977,5150,5219,5232,
5489,5699,6576,6710,7510,7663,8018,9087,9218,9366,
9416,9440,10315,10469
GAG count: 25
GGT: 232,341,636,658,916,994,1003,1180,1569,1645,1897,1903,
2054,2071,2081,2106,2239,2386,2410,2683,2922,3015,
3351,3408,3454,3466,3477,3652,3805,3985,4360,4491,
4617,4859,4981,5415,5435,5441,5601,5831,6101,6207,
6306,6460,6572,6605,6724,6787,7119,7303,7529,7764,
7826,7833,8015,8074,8140,8230,8380,8530,8542,8581,
8709,8717,8994,9003,9038,9060,9301,9507,9568,9745,
9931,9954,10269,10501,10515,10583,10586,10599,10712
GGT count: 81
GGC: (0)
GGA: 320,786,970,1009,1183,1388,1730,2156,2622,2868,3114,
3293,3394,3418,3555,3656,3817,3838,3969,4121,4682,
4889,4970,5762,5897,5906,6124,6253,6368,6511,6676,
6844,6913,7523,7591,7820,8093,8798,8848,8887,8904,
8937,9008,9091,9241,9472,9491,9807,10069,10096
GGA count: 50
GGG: 300,455,559,733,946,1236,1601,1979,2179,2568,2689,
2772,3679,3685,3844,4311,6140,6218,6865,7443,7600,
8628,8865,9151,9651,9731,9775,10193,10451,10645
GGG count: 30
CAT: 223,244,306,403,440,544,654,824,860,877,895,901,924,
990,1033,1406,1423,1479,1548,1650,1664,1827,1848,1929,
2002,2065,2296,2407,2650,2743,2788,2818,2821,3002,
3084,3306,3344,3868,3954,4221,4258,4378,4417,4752,
4920,4933,5102,5368,5419,5550,5749,5845,5944,5981,
6130,6250,6321,6503,6683,6700,6703,6899,6926,6970,
7178,7362,7389,7408,7413,7489,7542,7804,7836,8082,
8216,8398,8466,8486,8493,8523,8527,8562,8578,8894,
9043,9121,9238,9251,9640,9840,9962,9968,10035,10080,
10189,10216,10281,10445,10481,10680
CAT count: 100
CAC: 424,501,604,726,880,1027,1030,1084,1138,1141,1176,
1357,1364,1491,1559,1584,1698,1717,2008,2046,2185,
2243,2389,2482,2495,2809,2812,2944,2960,3104,3202,
3319,3328,3501,3900,4083,4188,4284,4341,4414,4539,
4658,4675,5031,5191,5275,5317,5381,5386,5499,5575,
5740,5975,6019,6333,6417,6526,6762,6893,6896,6973,
6989,7104,7365,7435,7474,7864,7980,8196,8212,8299,
8309,8554,8584,8608,8658,8876,9056,9078,9107,9229,
9406,9645,9699,9704,9710,9792,9872,9949,9971,10539
CAC count: 91
ATT: 76,202,326,832,1061,1255,1344,2033,2174,2335,2555,
2981,3647,3748,3751,3883,3934,3938,4175,4494,4592,
5513,5537,5633,5903,6397,6423,6734,6802,6811,6841,
7051,7125,7162,7499,7645,7839,7969,8012,8747,8795,
9075,9143,9867,9905,10203,10636
ATT count: 47
ATC: 874,1129,1612,2545,2615,2632,3520,3766,3925,4261,4698,
4780,5247,5456,5516,6035,6160,6595,6619,6623,7031,
7486,7515,8275,8509,8515,8573,9136,9349,9548,10206,
10222
ATC count: 32
ATA: 269,2512,2918,3157,3860,4349,4895,5012,5141,5156,7879,
7976,8127,8323,8433,8990,10047,10157,10169,10343
ATA count: 20
CTT: 129,253,410,848,1069,1475,1579,1942,2050,2289,2357,
2456,2499,2657,2707,2815,3067,3599,3602,3714,3779,
3782,3785,3928,4006,4011,4070,4097,4424,4481,4571,
4744,4864,4906,4964,5132,5297,5313,5689,6005,6046,
6589,6715,7291,7355,7373,7439,7653,8000,8614,8723,
9035,9274,9402,9454,9657
CTT count: 56
CTC: 90,358,517,678,772,1597,3108,3309,3469,3596,3918,4030,
4139,4306,4330,4421,4434,4447,4691,4929,5225,5334,
5422,5472,6193,6300,6325,6382,6632,6759,6947,7109,
7428,7452,7554,7954,8023,8200,9104,9125,9209,10053,
10265,10530,10669
CTC count: 45
CTA: 11,263,586,664,854,927,1337,1398,1440,1465,1781,2205,
2226,2654,2941,3227,3380,3698,3961,4178,4181,4352,
4585,5045,5099,5183,5822,5849,6146,6163,6548,6923,
6978,7927,7940,8117,8923,9286,9485
CTA count: 39
CTG: 431,443,818,1055,1368,3019,3091,3128,3584,4117,4783,
4914,4923,5208,5541,5725,5807,6154,6265,6707,7197,
7422,7465,7532,7896,7983,8150,8227,9444,9884,9890,
10018,10144
CTG count: 33
TTA: 477,1290,1512,1640,1653,1814,2277,2676,3078,3641,4170,
4193,4280,4999,5460,5645,5957,6351,7306,8449,8502,
8634,8766,9345,9388,9458,10213,10336
TTA count: 28
TTG: 179,290,719,811,1591,1624,2093,2253,2379,2898,3053,
3236,3875,4061,4132,4161,4498,4765,4818,6449,7115,
9114,9381,9611,10066,10418,10719
TTG count: 27
AAA: 110,329,389,704,800,1040,1261,1795,2087,2722,3561,
4196,4387,4427,4705,4738,5075,5159,5651,5713,6113,
6271,6490,6613,7211,7232,7945,7960,8110,8669,8735,
8774,8968,9323,10303,10459
AAA count: 36
AAG: 1286,3028,4708,4884,5024,7860,8980,9529,9627,10272
AAG count: 10
ATG: 551,1242,1911,2168,2265,2326,2669,2892,3011,3046,3120,
3622,3910,4045,4154,4531,4755,5438,6661,7673,7902,
8172,8443,8476,8496,8690,8713,9413,9519,9542,9620,
9667,9722,10006,10242
ATG count: 35
TTT: 33,70,73,260,504,851,898,904,1768,2138,2250,2271,2286,
2475,2905,3247,3253,3498,3893,3949,4638,4772,5495,
5582,6359,7972,8103,9026,9691
TTT count: 29
TTC: 61,172,344,437,1098,1572,1938,3734,3829,5346,5752,
5771,6414,7101,7502,7538,8064,8233,8720,8861,9498,
9590,9707,9918,10077,10732
TTC count: 26
CCT: 541,1091,1430,2398,3832,4874,6592,6862,7021,7810,8124,
9019,10084,10117,10580,10661
CCT count: 16
CCC: 272,1878,1950,1971,2532,2838,3374,3377,4088,4459,4548,
5475,7915,8032,9461,9478,9934,10527,10611,10614
CCC count: 20
CCA: 1615,2535,3267,3904,4023,4472,4542,4642,5135,5393,
6038,6929,9317,9760,10380,10533
CCA count: 16
CCG: (0)
TCT: 192,1270,1894,2317,5598,6718,8726
TCT count: 7
TCC: 1156,3548,5328,7297
TCC count: 4
TCA: 309,510,1375,2109,2220,2342,2594,2972,4363,5616,6935,
8258,8783,9911,10236,10284
TCA count: 16
TCG: 8831
TCG count: 1
AGT: 1,8,498,1354,1566,1684,1867,2005,2404,2699,3134,3325,
3487,3538,4184,4525,4555,4630,4801,4957,5006,5290,
5866,5879,6169,6817,7171,7638,7801,7870,8185,8436,
8644,8763,9742,9837,10324,10512
AGT count: 38
AGC: (0)
ACT: 1006,1690,2147,2600,2757,3508,5696,6517,6727,7147,
7217,7597,10151,10593
ACT count: 14
ACC: 220,4478,5703,6022,7997,8374,8611,10478,10563
ACC count: 9
ACA: 576,651,1162,1189,1453,2751,2988,3205,3438,4846,5061,
6481,7238,7656,8587,8997,9173,9188,9596,10673
ACA count: 20
ACG: 3411
ACG count: 1
TGG: 1249,1885,2192,2229,3160,3577,4287,4611,6240,6834,
7666,10106,10498
TGG count: 13
TAT: 469,3070,3111,4014,4967,5354,5365,6497,6950,7737,8395,
8483,9789,9999
TAT count: 14
TAC: 2802,3185,5129,7181,10492,10577
TAC count: 6
GTT: 1020,1855,2492,3776,4568,6586,8570,8777,8962
GTT count: 9
GTC: 769,2999,3460,4465,4688,5144,10060
GTC count: 7
GTA: 2951,8224,8264,10346
GTA count: 4
GTG: 570,2463,3220,4666,5261,5268,5432,6956,7133,7401,9372,
9853,10163,10178
GTG count: 14
TAA: 53,2100,5590,9277
TAA count: 4
TAG: 1267,2731,9831
TAG count: 3
TGA: 622,775,2925,3432,3532,3798,4393,5676,6049,7632
TGA count: 10
15) Codon Usage Bias:
About: Influenza B virus (B/Lee/1940) segment 3, complete sequence (2204bp)
VERSION: NC_002206.1
CODONS & LOCATIONS:
GCT: 134,322,382,446,510,535,652,819,870,916,991,1198,1201,
1411,1475,1485,1625,1717,1731,1804,1945,2196
GCT count: 22
GCC: 49,93,249,286,798,841,874,1084,1093,1252,1263,1275,
1351,1599,1670,1966,2018
GCC count: 17
GCA: 64,97,187,210,262,294,425,515,561,712,730,1043,1058,
1138,1213,1285,1296,1406,1509,1743,1756,1865,1894,
1926,1999,2098,2123,2189
GCA count: 28
GCG: 116,983,1498,1521
GCG count: 4
CGT: 464,949,1290
CGT count: 3
CGC: (0)
CGA: 357,905,996,1062,1149,1154,1557,1778,2183
CGA count: 9
CGG: 363,1532
CGG count: 2
AGA: 20,29,78,176,192,207,220,253,277,291,347,404,408,456,
505,525,579,582,679,690,699,721,787,825,899,908,930,
1070,1101,1131,1143,1164,1167,1192,1217,1266,1278,
1312,1450,1572,1579,1645,1720,1723,1770,1818,1822,
1900,1978,2007,2058,2093,2133,2151,2160
AGA count: 55
AGG: 128,167,171,195,201,242,313,374,491,495,501,573,594,
634,672,708,733,779,795,888,920,934,1012,1021,1049,
1098,1249,1272,1302,1315,1467,1505,1590,1785,1814,
1859,1878,1955,1975,2011,2015,2039,2136,2186
AGG count: 44
AAT: 36,39,60,68,86,141,214,246,366,421,451,476,570,585,
597,621,637,664,724,773,838,877,923,966,975,1033,1038,
1078,1122,1125,1176,1183,1187,1222,1269,1319,1330,
1335,1399,1434,1440,1459,1604,1620,1678,1692,1698,
1703,1710,1736,1740,1749,1828,1831,1905,1916,1942,
1949,1970,1992,2043,2063,2077,2088,2110,2114,2157,
2166,2169,2177,2200
AAT count: 71
AAC: 55,109,154,256,369,431,553,608,618,629,694,811,902,
942,957,1000,1053,1074,1110,1339,1447,1542,1652,1687,
1839,1868,2074
AAC count: 27
GAT: 4,148,163,237,267,325,334,377,385,388,435,438,472,
487,675,859,952,972,1258,1365,1765,1792,1923,2173
GAT count: 24
GAC: 518,601,614,882,961,1024,1106,1239,1480,1528,1551,
1585,1797,1854,2032
GAC count: 15
TGT: 138,645,737,854,1027,1157,1281,1299,1326,1345,1374,
1536,1539,1548,1611,1635,1656,1726,1761,1807,1932,
1988,2147
TGT count: 23
TGC: (0)
CAA: 17,43,274,762,1117,1173,1800,1836
CAA count: 8
CAG: 226,532,752,1210,1358,1845,1996
CAG count: 7
GAA: 232,399,549,589,978,1128,1309,1368,1402,1421,1462,
1471,1648,1714,1890,2128,2180
GAA count: 17
GAG: 538,862,1230,1305,1638,1673,1753,2054
GAG count: 8
GGT: 270,350,655,1206,1455,1492,1681,1958,2025,2085,2105,
2117
GGT count: 12
GGC: (0)
GGA: 298,576,1293,1642,1939
GGA count: 5
GGG: 417,776,867,1524,1706
GGG count: 5
CAT: 121,179,482,687,792,804,814,833,1391,1516,1775
CAT count: 11
CAC: 522,758,1384,1443,1911
CAC count: 5
ATT: 13,23,105,330,441,938,969,1065,1395,1632,1667,1849,
1908,1935,2028,2068
ATT count: 16
ATC: 112,317,624,642,1512,2154
ATC count: 6
ATA: 182,259,1113,1607
ATA count: 4
CTT: 8,160,282,393,479,529,744,912,1005,1323,1378,1388,
1614,1884,1981,2021,2049,2081
CTT count: 18
CTC: 308,660,740,847,850,1235
CTC count: 6
CTA: 32,459,556,704,727,946,1225,1355,1663,1897,1984
CTA count: 11
CTG: 83,124,784,1255,1495
CTG count: 5
TTA: 71,353,541,684,755,807,1015,1361,1488,1502,1562,1929,
1961,2002
TTA count: 14
TTG: 217,396,611,668,769,2035
TTG count: 6
AAA: 52,204,411,498,765,891,986,1246,1348,1593,1875,2143
AAA count: 12
AAG: 46,144,468,1087,1242,1862,2139
AAG count: 7
ATG: 1,151,1008,1046,1417
ATG count: 5
TTT: 157,546,844,1381,1554,1842,1920
TTT count: 7
TTC: 566,604,830,1810
TTC count: 4
CCT: 1576,1629
CCT count: 2
CCC: 1180
CCC count: 1
CCA: 223,344,649,896,1161,1695
CCA count: 6
CCG: (0)
TCT: 131,927
TCT count: 2
TCC: 26
TCC count: 1
TCA: 801
TCA count: 1
TCG: (0)
AGT: 360,747,1134,1414,1545,1567,1872,2071
AGT count: 8
AGC: 2193
AGC count: 1
ACT: 102,2102
ACT count: 2
ACC: 822,1170,1437
ACC count: 3
ACA: 90,198,1684,1746,1782
ACA count: 5
ACG: (0)
TGG: 428,1018,1090,1887,1952,2120
TGG count: 6
TAT: 229,1081,1789
TAT count: 3
TAC: 1342,1660
TAC count: 2
GTT: 414
GTT count: 1
GTC: 1881
GTC count: 1
GTA: 1030,1371,2046
GTA count: 3
GTG: 74,1195,1582,1596,1825
GTG count: 5
TAA: 1617
TAA count: 1
TAG: (0)
TGA: 885,1146,2163
TGA count: 3
16) Codon Usage Bias:
About: Ebola virus - Mayinga, Zaire, 1976, complete genome (18959bp)
VERSION: AF086833.2
CODONS & LOCATIONS:
GCT: 204,407,446,697,829,872,902,968,1037,1157,1178,1184,
1197,1313,1323,1349,1505,1517,1629,1646,1681,1691,
1700,1863,2133,2152,2291,2459,2566,2582,2728,2829,
2833,2963,3088,3115,3200,3208,3224,3289,3399,3408,
3534,3594,3609,3840,3909,3930,3996,3999,4021,4044,
4057,4115,4194,4203,4303,4310,4334,4417,4503,4557,
4582,4707,4739,4763,4779,4798,4826,4830,4889,4922,
4944,5040,5288,5373,5442,5576,5777,6298,6339,6351,
6361,6430,6510,6534,6567,6603,6622,6673,6702,6797,
6803,7064,7115,7412,7471,7476,7496,7556,7610,7675,
7717,7739,7771,7816,7860,8036,8083,8096,8186,8515,
8542,8882,8899,9031,9063,9102,9178,9244,9271,9325,
9347,9380,9589,9764,9771,9796,9824,9874,10013,10059,
10151,10178,10189,10348,10354,10471,10614,10659,10719,
10722,10791,10840,10944,11084,11092,11125,11139,11168,
11259,11338,11521,11584,11611,11662,11911,11947,12046,
12131,12202,12205,12405,12485,12506,12556,12613,12651,
12681,12717,12757,12765,13036,13058,13315,13324,13336,
13391,13463,13544,13744,13787,13792,14035,14092,14107,
14164,14304,14375,14478,14605,14637,14875,14935,15009,
15131,15196,15294,15586,15610,15652,15795,15849,16094,
16189,16320,16377,16405,16747,17068,17076,17095,17151,
17155,17211,17328,17404,17499,17563,17700,17722,18025,
18156,18168,18177,18293,18486,18505,18725,18853,18865
GCT count: 231
GCC: 145,502,627,644,816,832,875,880,908,972,1136,1148,
1280,1331,1358,1439,1508,1671,1676,1711,1788,1957,
1963,2010,2044,2064,2087,2095,2142,2192,2211,2218,
2282,2369,2427,2449,2491,2635,2847,2894,2906,2984,
2988,3154,3165,3188,3193,3317,3485,3618,3824,3921,
3925,3954,4048,4079,4152,4250,4496,4524,4634,4641,
4662,4666,4729,4815,4818,4970,5036,5119,5163,5267,
5345,5752,5769,5794,5874,5912,6275,6413,6442,6480,
6492,6596,6641,6903,6980,7142,7286,7304,7316,7376,
7457,7625,7645,7652,7721,7760,7839,8101,8198,8384,
8534,8545,8641,8821,9523,9605,9938,10027,10040,10122,
10218,10380,10439,10507,10540,10696,10781,10983,10989,
11255,11497,11793,11859,11867,12280,12490,12530,12603,
12663,12779,12826,12933,13077,13278,13444,13671,13873,
13897,13900,13904,13924,14016,14464,14534,14674,14694,
14752,14828,14968,15111,15223,15235,15424,15497,15828,
15853,15988,16113,16219,16474,16667,16898,17101,17276,
17515,17527,17547,17622,17690,17753,18376,18435,18663,
18869
GCC count: 176
GCA: 188,194,269,316,338,548,580,653,752,772,836,929,991,
1007,1012,1042,1126,1141,1271,1316,1336,1396,1421,
1427,1445,1463,1525,1541,1636,1896,1904,2014,2025,
2148,2174,2242,2268,2332,2341,2517,2666,2674,2694,
2879,3079,3148,3221,3294,3305,3334,3364,3419,3435,
3457,3501,3546,3582,3588,3600,3723,3789,3886,4188,
4307,4462,4567,4573,4678,4692,4748,4855,4860,5010,
5043,5193,5430,5462,5739,5773,6028,6059,6160,6264,
6282,6408,6452,6582,6651,6838,6942,7082,7096,7118,
7126,7197,7238,7263,7281,7313,7331,7350,7356,7416,
7461,7505,7544,7569,7613,7649,7681,7776,7802,7819,
7833,7997,8027,8052,8436,8455,8553,8587,8707,8765,
8866,8887,8913,8959,9013,9108,9118,9167,9181,9189,
9229,9515,9610,9621,9670,9948,9968,10001,10099,10139,
10262,10325,10515,10546,10621,10639,10642,10690,10874,
10966,10976,11029,11058,11190,11356,11409,11552,11697,
11705,11827,11837,11904,12005,12223,12252,12299,12349,
12549,12595,12708,12733,12772,13042,13066,13146,13183,
13292,13342,13352,13380,13398,13405,13413,13495,13516,
13535,13575,13602,13713,13814,13852,13860,13885,13909,
14047,14062,14102,14150,14161,14196,14252,14284,14298,
14459,14511,14546,14690,14712,14741,14817,14894,14908,
14991,15033,15046,15051,15082,15106,15118,15220,15275,
15316,15445,15505,15515,15547,15553,15635,15755,15867,
15887,15914,16010,16129,16192,16383,16478,16492,16514,
16529,16546,16571,16637,16707,16759,16822,16956,17019,
17080,17272,17323,17337,17362,17452,17665,17670,17676,
17841,17848,17860,17938,17994,17998,18021,18062,18089,
18138,18228,18247,18413,18416,18438,18452,18469,18764,
18803,18884,18911
GCA count: 281
GCG: 44,677,713,799,1081,1551,1703,1869,2887,2935,3162,
3250,3597,3666,4061,4178,4484,4928,5082,5087,5898,
5923,6043,7007,7404,7464,7521,7822,7830,8016,8415,
8652,8971,9093,9898,10415,10752,10993,11666,11785,
11862,12241,12416,12591,13888,14115,14290,14440,14489,
14566,14599,14671,14699,14706,14869,15247,15450,15509,
16101,16133,16184,16216,16286,16501,17441,17898,18388
GCG count: 67
CGT: 479,559,782,1073,1187,1256,2205,2296,2529,3006,3061,
3701,4219,4456,4961,5225,5416,5531,5970,5988,6069,
6198,6272,6475,6578,6664,6761,7213,7796,8626,8655,
8824,9126,9257,9276,9424,9494,9583,9592,10004,10242,
10245,10762,10796,10851,11462,11537,11734,12285,12625,
12929,13123,13375,13540,14174,14665,15072,15253,15430,
15607,16238,16368,16718,16721,16858,16907,16968,17012,
17519,17555,17614,17802,17932,18103,18225,18644,18823,
18880
CGT count: 78
CGC: 3331,8879
CGC count: 2
CGA: 180,465,945,1153,1247,1361,1621,1732,1744,1777,1806,
1824,1834,1852,1927,1936,1942,1945,1974,2167,2188,
2197,2200,2338,2719,2751,3002,3084,3169,3179,3313,
3325,3463,4026,4041,4092,4170,4276,4621,4655,5054,
5261,6075,6182,6248,6528,6552,6559,6740,6875,7010,
7021,7155,7276,7291,7308,7347,7535,7726,7731,7867,
8316,8539,8571,8584,8590,8614,8726,9041,9096,9132,
9145,9202,9455,9674,10201,10257,10363,10592,10804,
10918,10956,11048,11053,11720,11745,12058,12076,12319,
12474,12795,13074,13194,13286,13651,13665,13857,14134,
14401,14613,14619,15021,15124,15281,15319,15396,15561,
15703,15711,15768,15823,16443,16534,16685,16779,16783,
16787,16935,17343,17390,17400,17594,17686,17805,17869,
17947,18162,18343,18493
CGA count: 129
CGG: 1,95,449,775,1432,1450,1887,2103,2254,3205,3233,3352,
3575,3579,3672,4594,4726,4906,5179,5294,5368,5710,
5831,6308,6389,6419,6426,6438,6469,6655,6707,6847,
6893,6976,7188,7444,7618,7642,7854,7944,8421,9338,
9745,9867,10358,10863,12761,12890,13130,13216,13269,
13370,14183,14211,14268,14347,14786,15141,15640,16024,
16144,16645,17001,17908,18194,18655
CGG count: 66
AGA: 14,18,21,61,142,262,293,341,347,389,437,486,537,584,
619,670,724,795,861,886,891,961,978,1239,1243,1342,
1480,1499,1521,1587,1611,1617,1661,1666,1687,1795,
1878,1909,1933,1970,1992,1995,2031,2072,2114,2117,
2170,2230,2239,2303,2319,2323,2335,2347,2365,2401,
2418,2438,2521,2536,2548,2578,2593,2600,2652,2762,
3019,3037,3109,3127,3138,3183,3237,3271,3328,3440,
3449,3472,3538,3659,3679,3690,3697,3801,3881,3938,
3975,3992,4051,4084,4121,4174,4282,4395,4401,4421,
4560,4789,4878,5149,5182,5221,5270,5299,5381,5452,
5476,5490,5539,5544,5611,5624,5665,5822,5867,5887,
5905,5943,5959,6012,6082,6123,6228,6291,6416,6485,
6503,6607,6636,6693,6724,6728,6777,6811,6932,6949,
6999,7048,7069,7270,7335,7353,7407,7438,7447,7450,
7526,7529,7538,7690,7712,7757,7887,7897,7911,7982,
8078,8151,8274,8293,8299,8380,8409,8425,8475,8496,
8525,8548,8602,8606,8675,8678,8715,8772,8786,8828,
8844,8916,8954,8974,8979,8986,9010,9080,9111,9292,
9312,9452,9509,9537,9568,9734,9851,9857,9890,9912,
9931,9944,10034,10185,10284,10293,10316,10328,10335,
10397,10519,10627,10950,11108,11180,11236,11295,11310,
11320,11332,11369,11434,11475,11483,11489,11506,11512,
11545,11607,11659,11799,11880,11907,11952,11955,11979,
12067,12088,12120,12155,12237,12303,12353,12392,12413,
12420,12521,12573,12576,12585,12620,12637,12656,12873,
12913,12945,13029,13033,13047,13143,13149,13166,13239,
13245,13261,13386,13453,13479,13501,13527,13556,13646,
13769,13842,13868,13878,14041,14129,14188,14333,14358,
14411,14444,14514,14537,14616,14759,14778,14797,14912,
14946,14953,15089,15174,15177,15182,15229,15339,15530,
15574,15591,15687,15697,15807,15810,15857,15882,15903,
15921,15928,15962,16031,16201,16212,16234,16269,16323,
16364,16371,16396,16466,16522,16549,16598,16608,16621,
16681,16698,16829,16932,16963,16993,17088,17117,17132,
17178,17252,17286,17313,17320,17366,17373,17386,17566,
17618,17772,17815,17857,17864,18035,18045,18082,18099,
18133,18270,18550,18606,18685,18740,18757,18780,18810,
18840,18860,18872
AGA count: 361
AGG: 30,57,173,183,191,233,310,379,567,720,769,822,958,
981,1015,1051,1120,1274,1284,1296,1581,1759,1818,1980,
2007,2249,2352,2372,2379,2415,2445,2484,2746,2758,
2779,3145,3281,3379,3382,3525,3717,3760,3793,3935,
4213,4330,4539,4772,4954,5069,5093,5152,5212,5302,
5378,5404,5501,5572,5649,5788,5845,5964,5974,6015,
6050,6169,6251,6303,6322,6464,6572,6610,6658,6834,
6865,7027,7105,7109,7183,7599,7606,7656,7950,7975,
8120,8244,8305,8374,8529,8560,8635,8739,8800,8873,
8922,9162,9285,9320,9362,9662,9665,9778,9781,9902,
9983,10095,10163,10237,10265,10273,10388,10401,10451,
10460,10500,10561,10652,10769,11040,11104,11288,11425,
11502,11614,12002,12061,12189,12249,12359,12441,12527,
12849,12877,13051,13089,13257,13668,13684,13698,13707,
13891,13968,14082,14223,14310,14355,14721,14733,14803,
14821,14920,15057,15169,15186,15372,15388,15477,15489,
15492,15741,15744,15786,15966,16222,16510,16712,16808,
16836,16890,17036,17084,17091,17190,17206,17486,17651,
17791,17943,18067,18174,18208,18251,18347,18497,18692,
18890
AGG count: 186
AAT: 47,66,69,86,98,104,110,122,215,290,427,442,452,460,
490,516,611,622,825,905,948,994,1026,1088,1101,1111,
1169,1292,1385,1388,1472,1536,1591,1624,1769,1781,
1872,1901,1967,2037,2047,2054,2077,2108,2120,2161,
2553,2588,2597,2625,2645,2658,2689,2703,2724,2786,
2798,2821,2864,2876,2882,2911,2922,2947,2952,3014,
3029,3065,3070,3101,3227,3276,3302,3359,3509,3550,
3685,3732,3765,3850,3871,3949,3959,3965,3983,4145,
4155,4181,4184,4228,4259,4269,4288,4327,4356,4360,
4466,4476,4513,4545,4553,4605,4637,4716,4742,4751,
4757,4866,4884,4901,4931,5076,5096,5186,5198,5231,
5247,5258,5316,5327,5396,5458,5467,5527,5554,5562,
5606,5632,5676,5688,5691,5702,5706,5720,5726,5765,
5815,5828,5856,5882,5893,5927,5985,5999,6038,6053,
6107,6156,6219,6223,6243,6255,6330,6346,6366,6374,
6648,6689,6720,6750,6772,6807,6815,6857,6878,6890,
6937,7057,7073,7147,7164,7205,7480,7487,7553,7566,
7577,7660,7678,7685,7699,7786,7903,7958,7964,7986,
8023,8055,8107,8111,8127,8145,8164,8170,8175,8201,
8233,8256,8309,8327,8348,8402,8405,8472,8478,8508,
8630,8804,8817,8852,8857,8890,8931,9005,9047,9056,
9194,9206,9213,9238,9308,9316,9374,9417,9447,9485,
9501,9505,9528,9572,9578,9595,9644,9647,9692,9714,
9727,9754,9812,9816,9833,9871,9882,9895,9993,10063,
10104,10111,10131,10144,10226,10234,10254,10302,10369,
10374,10503,10531,10554,10564,10588,10602,10607,10775,
10788,10810,10832,10884,10897,10905,10961,10997,11075,
11080,11147,11176,11194,11198,11202,11221,11241,11351,
11372,11386,11393,11465,11560,11580,11600,11628,11642,
11692,11741,11886,11901,11924,11938,11985,11997,12011,
12024,12073,12117,12162,12168,12192,12294,12309,12336,
12345,12385,12495,12500,12546,12562,12579,12588,12629,
12815,12880,12898,12916,12920,12936,12959,12999,13081,
13096,13109,13136,13211,13252,13274,13484,13489,13567,
13584,13621,13749,13764,13807,13882,13932,14002,14012,
14218,14274,14326,14336,14350,14436,14482,14497,14584,
14622,14633,14715,14770,14773,14808,14860,14886,14924,
15026,15043,15150,15209,15242,15297,15325,15342,15351,
15376,15401,15427,15439,15569,15599,15604,15730,15751,
15772,15873,15892,15909,16017,16034,16048,16074,16081,
16104,16149,16278,16282,16293,16348,16351,16447,16538,
16648,16662,16674,16689,16762,16774,16795,16802,16845,
16848,16901,16915,17120,17181,17193,17231,17239,17247,
17280,17296,17393,17503,17509,17541,17550,17655,17679,
17873,17881,17890,17965,17978,18010,18038,18219,18289,
18316,18322,18338,18395,18403,18410,18444,18459,18480,
18525,18528,18539,18556,18594,18622,18637,18668,18681,
18698,18750,18776,18783,18797,18814,18817,18829,18835,
18904,18920,18928,18932
AAT count: 466
AAC: 50,165,168,226,281,284,296,333,353,366,372,395,398,
418,564,608,630,732,854,865,895,1033,1084,1213,1301,
1370,1413,1491,1494,1533,1554,1601,1639,1643,1654,
1717,1892,1989,2124,2137,2257,2264,2375,2390,2622,
2700,2716,2731,2755,2917,2930,2971,2992,3025,3044,
3123,3134,3321,3344,3392,3424,3428,3454,3506,3522,
3572,3622,3631,3729,3738,3755,3775,3804,3836,4130,
4199,4207,4374,4380,4406,4439,4550,4808,4938,4978,
5017,5029,5066,5113,5136,5157,5171,5240,5273,5323,
5513,5618,5672,5679,5993,6003,6033,6187,6205,6357,
6382,6716,6766,6853,6870,6887,6914,6923,6986,7034,
7039,7042,7132,7135,7174,7179,7193,7251,7254,7267,
7343,7384,7397,7421,7424,7560,7746,7765,7793,7894,
7936,8116,8192,8212,8222,8240,8283,8418,8443,8484,
8500,8687,8694,8793,8849,8862,8895,8963,9122,9330,
9334,9389,9399,9468,9550,9556,9600,9739,9748,9819,
9878,9918,10116,10154,10168,10251,10279,10297,10341,
10426,10443,10527,10682,10725,10728,10732,10738,10747,
10755,10772,10828,10855,10890,10914,10924,10972,11099,
11128,11230,11284,11306,11324,11399,11404,11451,11469,
11517,11591,11714,11723,11751,11870,11969,12054,12082,
12093,12181,12325,12330,12540,12668,12671,12698,12729,
12752,12830,12885,12993,13133,13153,13190,13219,13302,
13439,13470,13633,13657,13721,13865,13943,13953,13991,
14031,14157,14244,14255,14271,14391,14455,14520,14572,
14576,14649,14736,14767,14811,14880,14889,15014,15065,
15092,15115,15191,15203,15258,15267,15302,15469,15577,
15624,15663,15693,15791,15799,15924,15951,16038,16065,
16116,16124,16290,16333,16338,16400,16413,16525,16560,
16576,16579,16614,16702,16769,16816,16926,17027,17146,
17263,17266,17283,17292,17352,17370,17607,17632,17648,
17712,17797,17877,17894,17916,17957,18005,18117,18263,
18281,18326,18329,18449,18463,18574,18579,18589,18701,
18707
AAC count: 319
GAT: 276,383,473,496,527,571,662,803,1021,1060,1066,1078,
1096,1123,1145,1162,1204,1223,1574,1577,1736,1739,
1772,1799,1802,1847,1856,2234,2306,2456,2479,2513,
2615,2641,2708,2711,2771,2807,3032,3212,3264,3495,
3555,3566,3693,3816,3863,4089,4231,4256,4390,4644,
4782,5001,5021,5166,5235,5447,5504,5510,5558,5655,
5659,5714,5808,6072,6177,6422,6525,6590,6882,7513,
7630,7808,7877,7907,7922,7931,7990,8136,8167,8206,
8279,8288,8340,8563,8797,8837,8902,8905,8949,8998,
9036,9157,9358,9411,9519,9545,9562,9630,9717,9885,
9908,10308,10486,10647,10662,10677,10707,10714,10800,
10837,11067,11218,11313,11573,11773,11843,11965,12040,
12109,12112,12291,12376,12448,12533,12645,12789,12841,
12939,13063,13327,13359,13426,13429,13474,13572,13612,
13701,13797,13948,14059,14071,14074,14154,14263,14406,
14416,14419,14492,14677,14848,14857,14902,14985,15145,
15164,15456,15682,15717,15814,15842,16159,16275,16308,
16387,16426,16565,16585,16624,16633,16938,16975,17032,
17112,17359,17418,17434,17479,17506,17884,17968,18051,
18085,18142,18214,18240,18311,18392,18520,18571,18598,
18659,18688,18745,18832
GAT count: 196
GAC: 521,544,680,1559,1569,1684,1725,1811,1913,1949,1986,
2028,2111,2155,2177,2246,2387,3131,3230,3569,3643,
3780,3897,4032,4138,4345,4589,4611,4647,4803,5006,
5051,5058,5201,5291,5306,5320,5364,5412,5471,5802,
5834,5915,6086,6201,6238,6472,6747,6755,7030,7226,
7320,7361,7370,7509,7591,7851,7882,7955,7961,7972,
8160,8250,8354,8370,8567,8752,8943,9021,9199,9342,
9383,9706,9864,10491,10534,10557,10666,11142,11159,
11270,11638,11647,12139,12211,12660,12798,12973,13009,
13654,13728,13804,13845,13849,14085,14230,14237,14470,
14550,14608,14781,14794,15135,15289,15354,15724,16045,
16198,16205,16517,16552,16741,16790,16893,17073,17196,
17242,17725,18015,18171,18424,18768,18806,18847
GAC count: 124
TGT: 39,113,119,136,201,222,304,555,574,597,658,701,1207,
1837,2278,2421,2466,2494,2605,2782,2914,3094,3245,
3261,3413,3416,3531,3713,3811,3867,4007,4104,4239,
4291,4324,4363,4427,4450,4469,4535,4682,4775,4874,
5336,5409,5588,5640,5799,5849,5951,6022,6195,6208,
6311,6399,6449,6520,6575,6736,6954,6967,7122,7549,
7703,7749,7927,8045,8059,8360,8399,8580,8664,8722,
8747,8833,8939,9017,9028,9076,9218,9279,9512,9636,
9784,9801,9827,9838,9844,9861,10050,10071,10089,10288,
10407,10423,10848,10868,11225,11250,11396,11419,11631,
11710,11748,11754,11831,11848,11853,11959,12102,12144,
12264,12270,12316,12370,12396,12482,12676,12714,12805,
12864,13170,13296,13309,13319,13467,13551,13560,13594,
13605,13741,13821,13927,13959,14054,14475,14541,14629,
14655,14854,14980,15002,15037,15099,15333,15381,15459,
15534,15557,15631,15974,15993,16139,16263,16296,16344,
16431,16452,16462,16750,16990,17220,17225,17396,17492,
17587,17644,17728,17991,18057,18094,18419,18513,18533,
18546,18561,18641,18674,18695,18715,18771,18950,18954
TGT count: 183
TGC: 2092,14531
TGC count: 2
CAA: 9,154,249,457,602,757,986,998,1181,1210,1235,1714,
2003,2051,2856,3142,3174,3309,3348,3708,3858,3970,
4142,4383,4733,4785,5110,5190,5243,5285,5860,5996,
6120,6319,6377,6455,6600,6823,6972,7054,7091,7244,
7273,7326,7394,7736,7900,8463,8647,8927,9002,9053,
9142,9565,9624,9687,9768,10044,10198,10322,10383,10497,
10585,10759,10818,10860,10894,11264,11280,11760,11823,
12234,12341,12509,12616,12694,12739,12909,12996,13186,
13402,13421,13717,13919,14997,15206,15271,15393,16330,
16568,16766,16943,17061,17125,17228,17317,17558,17629,
17683,17810,17902,17954,18398,18916
CAA count: 104
CAG: 198,207,327,594,641,914,1047,1173,1194,1484,1999,2041,
2061,2383,2396,2503,2509,2684,2898,3338,3918,4066,
4579,4600,4631,4675,4919,4941,4986,5481,6232,6541,
6699,6789,6963,6991,7099,7518,8013,8228,8779,8840,
9115,9153,9250,9476,10022,10669,11780,11813,11834,
12220,12227,12365,12610,12861,13448,13591,13608,13810,
13829,14020,14363,14372,14383,14897,15077,15285,15405,
15655,15978,16726,16982,17166,17640,17716
CAG count: 76
GAA: 212,650,743,788,811,849,899,1860,2315,2573,3877,4704,
4745,5662,6336,6354,6556,6830,6850,7112,7468,7541,
8091,8377,8512,8733,9175,9262,10181,10524,10980,11025,
11549,11982,13236,13242,13312,13985,14703,15313,15643,
15706,16601,16642,17047,17376,17448,17775,18148,18900
GAA count: 50
GAG: 505,673,807,1251,1380,1453,1467,1502,1514,1544,2225,
2869,3606,3720,3912,4191,4242,4424,4481,4521,6145,
6259,6392,6396,6897,7235,7453,7500,8007,8490,8620,
8681,9066,10214,10480,11014,11769,13458,13507,14661,
14872,15232,15435,15481,15583,16152,16918,17161,17575,
17731,18028,18183
GAG count: 52
GGT: 132,273,359,413,551,911,952,1063,1132,1400,1651,1840,
1843,1918,2618,2638,3118,3477,3542,3563,3627,3675,
3828,4029,4095,4100,4125,4487,4563,4712,4893,5279,
5359,5393,5967,6104,6326,6342,6445,6507,6644,6743,
6995,7087,7694,7707,7968,8000,8460,8617,9300,9353,
9540,9789,9854,10067,10404,10454,10474,10550,10702,
10930,10938,11389,11412,11529,11669,11944,12035,12064,
12098,12215,12857,13330,13362,13435,13687,13774,13801,
14007,14301,14507,14625,14834,15264,16195,16327,16380,
16588,16753,17098,17306,17346,17457,17533,17579,17758,
17818,18199,18256,18567,18907
GGT count: 102
GGC: 499,749
GGC count: 2
GGA: 424,766,883,1939,2185,3772,4935,5079,5146,5812,6862,
6911,8183,8919,9044,10457,10693,10941,12079,12152,
12524,14730,14825,14950,14965,15062,15846,16833
GGA count: 28
GGG: 3151,4608,5255,6025,6295,7827,9099,12136,12451,12704,
12956,13695,14452,15985
GGG count: 14
CAT: 80,149,244,589,637,694,707,710,1004,1057,1129,1226,
1262,1562,1607,1747,1765,1828,2431,2474,2562,2610,
2662,2678,2681,2957,3050,3053,3254,3369,3403,3431,
3445,3517,3646,3892,3902,3906,4010,4016,4075,4224,
4435,4445,4618,4652,4659,4687,4697,4721,4823,4834,
4848,4911,5047,5101,5106,5123,5252,5330,5354,5390,
5421,5535,5585,5629,5669,5735,5742,5782,5838,5870,
5933,6091,6127,6134,6149,6163,6211,6498,7060,7202,
7430,7583,7836,7843,7874,7891,7919,8087,8236,8333,
8351,8449,8519,8594,8597,8671,8690,8718,8982,9296,
9350,9435,9438,9575,9679,9684,9703,9956,10077,10082,
10086,10173,10205,10344,10576,10632,10741,10900,10908,
10911,11011,11117,11132,11173,11329,11621,11678,11681,
11789,11796,11805,11889,12019,12106,12123,12199,12261,
12435,12479,12634,12641,12690,12721,13055,13232,13409,
13630,13679,13690,13963,14051,14121,14137,14170,14203,
14206,14279,14525,14553,14596,14645,14744,14763,14851,
14930,15068,15155,15159,15305,15364,15412,15420,15619,
15671,15677,15776,15861,15864,15896,15932,15943,16078,
16090,16097,16165,16179,16242,16247,16259,16391,16419,
16435,16489,16496,16591,16630,16813,16840,16880,16910,
16971,17016,17236,17289,17355,17428,17635,17693,17707,
17737,17765,17768,17851,18076,18130,18285,18298,18302,
18305,18456,18508,18628,18735,18843,18856
CAT count: 227
CAC: 5,125,256,511,533,1115,1696,1707,1815,2034,2069,2081,
2084,2181,2271,2275,2286,2309,2357,2405,2442,2559,
2569,2648,2795,3634,3637,3649,3746,3751,3819,3846,
4003,4072,4235,4627,4670,4838,4844,4870,4994,5024,
5032,5206,5387,5399,5547,5582,5853,6008,6139,6153,
6215,6316,6625,6686,6782,6928,7171,7209,7259,7294,
7339,7381,7400,7433,8179,8575,8776,9083,9225,9414,
9488,9640,10159,10208,10223,10319,10599,10610,11019,
11036,11233,11247,11365,11415,11431,11588,11624,11655,
11898,12176,12185,12257,12516,12565,12967,12976,12983,
13100,13105,13208,13417,13625,13638,14556,14687,14972,
15385,15613,15832,15936,16458,16617,16694,16853,16922,
17425,17626,17788,17822,17835,17923,18407,18850
CAC count: 125
ATT: 24,299,350,421,762,857,937,1201,1424,1728,1924,2452,
2469,2631,2734,2765,2790,2814,2837,2840,2925,2938,
2995,3240,3267,3284,3395,3613,3669,3783,3796,3807,
4035,4351,4367,4493,4990,5520,5652,5682,5948,6056,
6679,7493,7805,7916,8003,8041,8123,8392,8609,8667,
8742,9241,9473,9699,9730,9792,9807,9924,9927,9978,
10092,10305,10447,10466,10477,10512,10581,10595,10813,
10825,10879,11120,11335,11343,11445,11472,11525,11576,
11634,11675,12049,12231,12438,12460,12463,12684,12823,
12833,12836,13003,13018,13071,13162,13395,13532,13616,
13735,13956,13979,14065,14379,14424,14467,14581,14592,
14640,14709,14748,14814,14927,14962,14994,15199,15238,
15453,15520,15523,15565,15659,15714,15765,15802,15820,
15877,16001,16058,16119,16156,16174,16227,16481,16594,
16959,17109,17139,17257,17431,17445,17537,17929,17972,
18079,18189,18260,18308,18333,18359,18429,18517,18710,
18731,18893,18937
ATT count: 155
ATC: 33,240,841,1029,1229,1417,1488,1791,2424,2532,2556,
2669,2942,4246,4624,5072,5174,5493,5516,5758,6111,
6278,6461,6546,7229,8033,8253,8321,9459,9586,10107,
10377,11043,11095,11154,11162,11298,11728,11991,12362,
12380,12736,12852,13199,13283,13975,14118,14140,14191,
14316,14680,14843,14863,15595,15837,15870,15956,16004,
16316,16361,17187,17582,17604,17749,17950,18235,18536,
18542
ATC count: 68
ATA: 91,1821,2299,2655,2903,3157,4262,4516,4527,4576,5565,
5635,5791,6018,6818,6841,8048,8131,8195,9138,9395,
9427,9531,9751,9915,10018,11111,11135,11184,11346,
11378,11441,11457,11594,12784,12801,12818,12905,13092,
13355,13580,13598,14098,14199,14724,15095,15127,15666,
16013,17005,17784,17919,18266,18362,18800,18875
ATA count: 56
CTT: 237,287,356,376,541,614,689,704,739,869,925,941,1220,
1268,1306,1353,1364,1373,1391,1403,1565,1595,1753,
2221,2409,2543,2811,2873,3047,3057,3097,3257,3468,
3558,3986,4134,4162,4442,4701,4965,4997,5127,5216,
5340,5436,5591,5615,5729,5746,5755,5877,5930,5940,
5979,6095,6099,6114,6369,6488,6515,6531,6562,6614,
6617,6632,6957,7014,7017,7139,7223,7742,7780,7813,
7940,8062,8074,8141,8157,8217,8312,8330,8337,8363,
8730,9070,9234,9371,9402,9408,9462,9618,9722,9758,
9921,9953,9962,10007,10410,10431,10569,10636,10673,
10686,10699,11008,11071,11089,11114,11215,11276,11532,
11564,11570,11689,11766,11818,11877,11916,11919,11973,
11988,12126,12288,12426,12537,12869,12895,12902,12970,
13174,13226,13266,13306,13333,13492,13520,13754,13833,
13839,13935,14026,14077,14147,14233,14319,14322,14427,
14432,14517,14589,14959,15215,15346,15359,15416,15473,
15616,15817,15948,15970,16021,16042,16062,16108,16250,
16255,16301,16485,16542,16556,16731,16871,16875,16950,
17041,17136,17260,17303,17421,17461,17469,17598,17601,
17659,17844,17854,17982,17986,18108,18120,18244,18474,
18584,18601,18633,18671,18704,18788,18791,18820,18941,
18944
CTT count: 202
CTC: 76,177,259,265,483,920,1106,1259,1319,1410,1460,1529,
1548,2099,2128,2145,2327,2361,2539,3074,3215,3512,
3941,3946,4158,4167,4413,4507,4615,4768,4950,5013,
5062,5425,5498,5598,5761,5936,7078,7150,7300,7596,
7790,8702,8809,9247,9305,9421,9656,9959,10053,10312,
10420,10710,11005,11206,11292,11302,11685,12430,12926,
12980,12990,13289,14124,14248,14258,15369,15734,15748,
16070,16209,16357,16439,17201,17829,17912,18202,18319,
18380
CTC count: 80
CTA: 402,1232,1658,1953,2208,2435,2776,2844,2978,2981,3480,
3735,4409,4793,5311,5568,5603,5695,5698,6286,6402,
6667,6682,6758,8148,8259,8344,8660,8711,8812,9025,
9088,9184,9405,9431,9481,10195,10843,11383,11650,11701,
12275,12401,12598,12949,12952,13118,13179,13204,13349,
14287,14343,14486,14560,14756,15018,15464,15674,15899,
16028,16084,16651,16657,16735,16861,16867,17215,17300,
17333,17438,17473,17570,18072,18355,18718
CTA count: 75
CTG: 493,1328,1377,1785,3196,3640,4253,4510,4897,5785,6268,
6385,6908,7367,7588,7622,7754,7847,8967,10031,10147,
10332,10393,12043,13642,13725,14089,14330,14504,14800,
14866,14917,16506,17483,17590,17697,18501,18897
CTG count: 38
TTA: 101,319,432,633,727,1882,2824,2890,2967,2974,3010,
3040,3460,3491,3653,4398,5130,5486,5579,5645,5908,
6046,6063,6172,7580,7663,8010,8019,8065,8154,8189,
8296,8430,8481,8505,9073,9148,9221,9253,9289,9653,
9709,9934,9965,10010,10119,10127,10134,10436,11033,
11361,11486,11509,11617,12016,12070,12172,12389,12408,
12423,12553,12746,12775,12812,12963,13012,13112,13367,
13511,13523,13778,13783,13817,13825,13916,13939,14366,
14386,14837,14905,15226,15328,15543,15720,16054,16136,
16409,16455,16986,16997,17022,17104,17129,17309,17512,
17734,17740,17745,18001,18032,18152,18489,18609,18618,
18648,18923
TTA count: 106
TTG: 344,363,369,819,975,1367,1476,2412,2818,3376,3682,
3769,3832,4148,4760,5805,6142,6235,6712,6769,7248,
8271,8684,8782,10276,10624,11556,11737,12356,13249,
13760,13982,14111,14791,15006,15310,16007,16231
TTG count: 38
AAA: 964,1288,1584,1614,2801,3022,3106,3112,4054,4273,4314,
4453,4473,5139,5348,5621,5825,5890,6918,6983,8302,
8452,8466,8736,8768,9830,10230,10338,10351,10785,11492,
11935,12742,12749,12768,13339,13383,13912,13988,14569,
15738,16266,16677,17464,18651,18754,18760,18887
AAA count: 48
AAG: 1310,1720,2737,3662,4370,4386,7387,7799,8395,9377,
9695,9971,10047,11061,11479,11893,12466,12648,13731,
15628,15996,16422,17703,18165
AAG count: 24
ATG: 54,470,524,1598,2487,2585,3498,5901,7602,7978,8522,
10927,10969,11840,12008,12208,13547,14044,15261,16272,
16305,16670,17496,18018,18441
ATG count: 25
TTT: 27,36,72,647,665,685,735,785,917,1069,1091,1190,2463,
2499,2628,2768,2851,4108,4430,5550,5594,5749,5954,
6130,6585,6792,8069,8247,8324,8387,8760,8790,9171,
10211,10268,10463,10483,10537,10822,10933,11000,11064,
11428,11541,11802,12028,12147,12306,12792,12809,12986,
13139,13156,13222,13345,13432,13498,13563,13971,14068,
14143,14177,14180,14226,14340,14668,14683,15484,15690,
15779,15981,16051,16168,16354,17058,17142,17522,17761,
17926,18186,18211,18564,18614,18947
TTT count: 84
TTC: 139,253,323,392,779,1165,1406,1604,2214,2260,2861,
3726,3843,3915,3979,4111,4851,4947,5116,5841,5982,
6078,6117,6495,7364,7783,8556,8699,8908,9267,9282,
9497,9847,10744,11437,11994,12031,12165,12245,12267,
12322,12469,12606,12687,13085,14167,14215,14528,15526,
16805,18113
TTC count: 51
CCT: 129,219,230,1265,1921,3705,4586,4916,4925,5384,6066,
7168,7574,8440,8936,9210,9553,9615,10543,10573,11244,
11375,11567,12570,14369,14449,14727,14956,15409,16162,
18385
CCT count: 31
CCC: 3298,3356,4038,4532,4983,5133,5333,6434,6629,7024,
7160,7323,7373,7391,8869,9059,9368,11597,11604,12159,
12195,13587,13660,13836,14976,15906
CCC count: 26
CCA: 1633,1977,3989,4013,4279,4377,5282,5439,6405,6538,
6786,6800,6844,7051,7563,7871,9941,10656,10947,11317,
14883,15649,15783,15959,16087,16627,16826,16929,16979,
18957
CCA count: 30
CCG: 7004,7994
CCG count: 2
TCT: 476,508,934,1930,2312,5276,5732,7129,7232,8209,8412,
9050,9129,9491,9633,9841,9905,11165,11454,12085,12333,
12373,12445,13159,13229,14718,15502,16171,16744,17009,
18145,18180,18466
TCT count: 33
TCC: 1750,1756,1831,2058,4069,4754,4975,5090,5209,5228,
7297,9990,10248,10807,11717,11810,12711,12923,14023,
14501,14652,15030,15121,15250,18352
TCC count: 25
TCA: 330,792,2743,3341,3962,4118,4294,4542,5717,6960,7102,
8104,8225,8644,10494,10766,11976,12846,13299,13738,
14602,15040,15086,15336,15442,16605,17269,17838
TCA count: 28
TCG: 577,3786,16819,17065
TCG count: 4
AGT: 746,845,955,1216,1435,1960,2804,3372,3386,3488,3741,
3854,4265,4348,4597,4736,4957,5142,5160,5264,5433,
5455,5507,5524,5918,6191,6458,8357,8367,8487,8755,
9135,9559,9627,9997,11150,11873,12512,12724,13006,
13015,13675,14095,14240,14563,15103,15727,16311,16582,
16738,16946,17184,17340,17476,17778,17826,17905,17961,
18232
AGT count: 59
AGC: 8638
AGC count: 1
ACT: 1018,1511,3603,3889,4500,6593,6676,6733,7241,7427,
7490,7532,7857,8876,8946,9392,9975,10735,10921,11022,
11448,12701,13710,15580,16374,17158,17530,17673,17781,
17935,18366,18432,18728
ACT count: 33
ACC: 717,1277,1457,1762,1875,2158,2393,3591,4863,6661,7484,
7633,7947,8989,10953,11273,13039,14295,15054,15940,
16341,18042
ACC count: 22
ACA: 313,1054,1442,2344,2526,2999,3389,3585,4570,5685,8446,
10074,12313,12543,14038,15512,16471,16611,16756,17611
ACA count: 20
ACG: 1866,4812,16953,17662
ACG count: 4
TGG: 410,1339,2697,3874,5819,6827,6900,8493,9105,9775,10618,
10887,10986,14307,15918,17044,18553
TGG count: 17
TAT: 1346,2960,3091,4210,4490,4841,6333,6696,7864,9761,
9804,11672,12503,13504,14658,14831,15138,17349,17719,
17794,17832,17887,18159,18477,18625
TAT count: 25
TAC: 116,530,2506,5864,6166,6549,7441,8623,9659,10037,10192,
10366,11731,11757,11777,12582,13127,15700,16416,18205,
18222,18794
TAC count: 22
GTT: 3528,5723,8030,8433,9650,11267,11422,11763,11962,14313,
14840,15278,15550,18048,18826
GTT count: 15
GTC: 4881,8469,15212,16654,16715,16864
GTC count: 6
GTA: 605,1001,4216,5351,9365,9986,12559,13115,15322,15646,
17407,17489,18677,18721
GTA count: 14
GTG: 1983,6670,6945,11941,13894,16798
GTG count: 6
TAA: 307,2164,4285,9386,9465,10056,11187,12942,16904,17544,
17975,18483
TAA count: 12
TAG: 2740,13757,18054
TAG count: 3
TGA: 83,107,386,3218,3656,4459,7045,7768,9534,9742,10778,
10871,11856,11883,13704,14988
TGA count: 16
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