This is an appendix to: Quantum Biology - 11
44) Codon Usage Bias:
About: Influenza B virus (B/Lee/1940) segment 4, complete sequence (1882bp)
VERSION: NC_002207.1
CODONS & LOCATIONS:
GCT: 346,359,517,530,547,764,792,1065,1129,1135,1287,1332,
1353,1381,1394,1419,1491,1504,1526,1573,1576,1636,
1658,1680,1696,1699,1706,1711,1729,1824,1832,1868
GCT count: 32
GCC: 133,239,274,506,724,882,936,959,996,1024,1037,1069,
1092,1496,1559,1799
GCC count: 16
GCA: 2,13,40,76,89,202,257,281,293,313,372,466,580,806,
872,901,908,914,952,992,1014,1018,1096,1171,1179,1201,
1213,1219,1222,1321,1411,1455,1465,1547,1580,1591,
1639
GCA count: 37
GCG: 8,803,1316
GCG count: 3
CGT: 104,270,513,1854
CGT count: 4
CGC: (0)
CGA: 82,375,786,966,1338,1341,1350,1359,1428
CGA count: 9
CGG: 975,1125,1182
CGG count: 3
AGA: 221,226,261,379,391,412,459,564,575,600,621,630,682,
693,755,780,783,868,1011,1087,1114,1232,1242,1256,
1290,1309,1356,1378,1449,1474,1484,1509,1553,1563,
1596,1756,1792,1849
AGA count: 38
AGG: 141,213,430,471,474,485,498,624,789,849,917,927,1008,
1029,1109,1149,1152,1161,1431,1515,1567,1788
AGG count: 22
AAT: 22,33,45,73,151,191,205,290,324,369,387,403,445,454,
520,543,586,636,675,700,727,772,810,855,921,942,985,
1033,1041,1072,1082,1164,1267,1327,1344,1389,1437,
1488,1512,1519,1544,1588,1648,1666,1722,1762,1865
AAT count: 47
AAC: 66,99,109,129,174,177,180,216,233,244,253,301,341,
395,424,438,526,538,568,571,594,669,735,777,797,836,
846,852,1053,1077,1100,1260,1273,1300,1441,1478,1533,
1538,1627,1692,1716
AAC count: 41
GAT: 79,96,165,356,416,661,820,955,980,1167,1369,1372,1384,
1434,1618,1651,1654,1663,1725
GAT count: 19
GAC: 156,284,462,492,664,1225,1759
GAC count: 7
TGT: 48,120,162,247,616,642,747,813,816,858,893,1740,1771,
1780,1784,1803,1818,1835,1873
TGT count: 19
TGC: 898
TGC count: 1
CAA: 30,210,287,383,560,706,832,865,886,1306,1399,1425,
1846
CAA count: 13
CAG: 441,590
CAG count: 2
GAA: 5,36,145,230,334,421,679,842,949,1050,1062,1471,1861
GAA count: 13
GAG: 731,1208
GAG count: 2
GGT: 60,123,552,650,760,828,946,1047,1117,1138,1174,1523,
1749
GGT count: 13
GGC: (0)
GGA: 267,627,911,1146,1158,1198
GGA count: 6
GGG: 297,489,523,647
GGG count: 4
CAT: 57,196,331,350,608,612,719,742,825,1190,1195,1204,
1622,1669,1737,1746,1776,1827,1841
CAT count: 19
CAC: 113,170,305,655,714,738,1005,1238,1611,1838
CAC count: 10
ATT: 879,1104,1132,1277,1630,1719,1858
ATT count: 7
ATC: 25,69,85,427,435,451,501,556,1732
ATC count: 9
ATA: 583,1185,1570,1675
ATA count: 4
CTT: 406,534,933,1059,1122,1143,1228,1303,1408,1416,1461,
1468,1556,1584,1606,1643,1812
CTT count: 17
CTC: 116,137,309,321,328,409,495,685,696,752,1270,1500,
1689,1752
CTC count: 14
CTA: 52,185,277,365,480,509,1002,1312,1375,1683,1686,1703,
1743,1878
CTA count: 14
CTG: 92,353,839
CTG count: 3
TTA: 861,999,1795
TTA count: 3
TTG: 1529
TTG count: 1
AAA: 316,800,889,924,969,988,1263,1296,1362
AAA count: 9
AAG: 709,1021,1281
AAG count: 3
ATG: 689,1044,1155,1324
ATG count: 4
TTT: 16,199,250,875,939,1599,1614,1766,1807
TTT count: 9
TTC: 362,1422,1602
TTC count: 3
CCT: 400,703
CCT count: 2
CCC: 768
CCC count: 1
CCA: 188,633,672,963
CCA count: 4
CCG: (0)
TCT: 19,264,658,1458
TCT count: 4
TCC: (0)
TCA: 338,1335
TCA count: 2
TCG: (0)
AGT: 63,597,603,904,1293,1365,1444,1821
AGT count: 8
AGC: 1245
AGC count: 1
ACT: 1347,1633,1672
ACT count: 3
ACC: 477,1056,1550
ACC count: 3
ACA: 1541
ACA count: 1
ACG: (0)
TGG: 159
TGG count: 1
TAT: 236
TAT count: 1
TAC: 639,1815
TAC count: 2
GTT: 448
GTT count: 1
GTC: 148,930
GTC count: 2
GTA: 972,1235
GTA count: 2
GTG: 1216
GTG count: 1
TAA: 126
TAA count: 1
TAG: (0)
TGA: 1284,1452,1481
TGA count: 3
45) Codon Usage Bias:
About: Influenza A virus (A/Puerto Rico/8/1934(H1N1)) segment 3, complete sequence (2233bp)
VERSION: NC_002022.1
CODONS & LOCATIONS:
GCT: 47,69,158,322,529,546,663,743,759,787,873,933,1119,
1230,1286,1321,1668,1816,1967,2002,2019,2035,2079,
2127,2134,2186,2196
GCT count: 27
GCC: 283,427,490,499,571,581,667,684,698,715,843,883,1387,
1426,1681,1688,1701,1881,2102
GCC count: 19
GCA: 8,130,133,140,192,232,243,275,308,524,575,659,755,
896,943,953,1041,1051,1059,1129,1147,1197,1234,1264,
1339,1343,1382,1438,1447,1450,1484,1589,1934,1948,
1975,2089,2164,2181
GCA count: 38
GCG: 2,39,73,197,858,1268,1509,1770
GCG count: 8
CGT: 210,470,598,1572,2028
CGT count: 5
CGC: (0)
CGA: 56,66,114,261,378,513,606,732,737,820,836,1002,1170,
1569
CGA count: 14
CGG: 1955
CGG count: 1
AGA: 30,90,171,213,247,268,326,345,370,397,446,483,519,
559,564,610,615,618,630,712,777,790,829,921,958,1070,
1079,1091,1139,1152,1161,1179,1218,1247,1278,1304,
1311,1314,1348,1368,1392,1492,1514,1546,1615,1637,
1655,1662,1675,1763,1802,1833,1839,1851,1862,1872,
1890,1989,2011
AGA count: 59
AGG: 101,318,362,394,532,634,648,752,902,918,977,1007,1076,
1157,1185,1225,1351,1406,1499,1502,1542,1558,1659,
1691,1720,1902,1910,1928,1992,2041,2096
AGG count: 31
AAT: 24,44,52,84,111,125,187,204,207,229,255,258,279,367,
381,430,435,440,486,567,624,642,654,706,768,784,866,
890,927,950,985,1011,1015,1021,1083,1099,1326,1354,
1401,1420,1435,1466,1470,1476,1561,1631,1726,1740,
1746,1751,1758,1797,1868,2006,2047,2106,2110,2131
AAT count: 58
AAC: 81,117,121,298,329,390,450,540,651,688,797,810,813,
980,995,1055,1110,1214,1258,1271,1331,1519,1579,1622,
1731,1793,1875,1963,1985,2015,2054,2146
AAC count: 32
GAT: 17,60,223,271,355,589,724,728,876,880,940,971,1189,
1204,1210,1242,1300,1456,1459,1479,1809,2068,2113
GAT count: 23
GAC: 288,502,621,670,1063,1275,1564,1609,1845,1938,2044,
2061
GAC count: 12
TGT: 36,63,164,350,720,850,990,1031,1174,1182,1317,1373,
1412,1444,1489,1523,1584,1645,1706,1712,1716,1774,
1827,1970,2177,2207,2224
TGT count: 27
TGC: (0)
CAA: 21,332,494,537,673,774,908,1088,1283,1697,1736,1830,
1848,1899,2211
CAA count: 15
CAG: 543,601,1783,2032
CAG count: 4
GAA: 76,87,108,151,240,400,421,703,807,1038,1104,1194,1505,
1813,1836,2086
GAA count: 16
GAG: 386,578,1252,1594,1767,1819,2169
GAG count: 7
GGT: 11,220,1135,1528,1575,2121,2141
GGT count: 7
GGC: (0)
GGA: 27,265,480,974,1925
GGA count: 5
GGG: 97,924,1409,1634,1754,2074
GGG count: 6
CAT: 183,375,408,456,462,555,747,913,962,1034,1143,1335,
1364,1398,1416,1533,1536,1842,1884,1920,2161,2202
CAT count: 22
CAC: 145,178,312,474,507,552,645,824,998,1378,1552,1605,
1625,1787,1982
CAC count: 15
ATT: 167,304,549,793,1066,1221,1358,1944,1959,1995,2092,
2192
ATT count: 12
ATC: 416,946,1025,2199
ATC count: 4
ATA: 136,411,936,1200,1395,1684,2082
ATA count: 7
CTT: 217,235,594,800,832,966,1132,1164,1297,1432,1618,1651,
1857,2023,2038,2064,2071,2138,2151,2155
CTT count: 20
CTC: 679,693,764,854,1601,1777,1780,1824,1895,1979
CTC count: 10
CTA: 340,1094,1496,1672,2229
CTA count: 5
CTG: 443,585,1048,2050,2057,2118
CTG count: 6
TTA: 886,1429,1555,2172
TTA count: 4
TTG: 148,251,638,899,1239,1307
TTG count: 6
AAA: 5,1107,1122,1539,1913,2214
AAA count: 6
AAG: 424,1113,1261,1951
AAG count: 4
ATG: 839,1073,1453,1878
ATG count: 4
TTT: 33,174,337,465,709,803,1597,1694,1941,2124
TTT count: 10
TTC: 404,1028,1255,1462,1790,1917,1998
TTC count: 7
CCT: 105,226,870,2221
CCT count: 4
CCC: 847
CCC count: 1
CCA: 459,817,863,1018,1612
CCA count: 5
CCG: (0)
TCT: 510,1441,1709,1931
TCT count: 4
TCC: 1473,1549
TCC count: 2
TCA: 161,1116,1361
TCA count: 3
TCG: (0)
AGT: 200,291,294,301,676,780,1044,1207,1640,1678,1905,2099,
2217
AGT count: 13
AGC: (0)
ACT: 14,1423,2189
ACT count: 3
ACC: 905,930
ACC count: 2
ACA: 359,453,1628,1723,1865,2158
ACA count: 6
ACG: 740
ACG count: 1
TGG: 477,1126,1887
TGG count: 3
TAT: 94,155,1665,1806
TAT count: 4
TAC: 315
TAC count: 1
GTT: 1648,1854
GTT count: 2
GTC: 771
GTC count: 1
GTA: (0)
GTG: (0)
TAA: 893,1743
TAA count: 2
TAG: (0)
TGA: 516,627,1167
TGA count: 3
46) Codon Usage Bias:
About: Influenza A virus (A/Puerto Rico/8/1934(H1N1)) segment 8, complete sequence (890bp)
VERSION: NC_002020.1
CODONS & LOCATIONS:
GCT: 49,64,131,204,338,446,464,471,537,630,816,855
GCT count: 12
GCC: 114,136,195,270,364,515,802
GCC count: 7
GCA: 2,8,74,82,93,166,169,212,252,350,360,489,555,640,783,
798,828
GCA count: 17
GCG: 224,282,287,390,420,499,693
GCG count: 7
CGT: 201
CGT count: 1
CGC: (0)
CGA: 87,188,245,299,479,603,684
CGA count: 7
CGG: 572
CGG count: 1
AGA: 20,59,101,140,145,156,236,239,378,451,482,622,636,
649,657,679,710,720,727,741,748,768,831,838
AGA count: 24
AGG: 55,107,162,313,324,468,527,541,575,705,761
AGG count: 11
AAT: 26,148,260,317,328,458,503,552,583,588,645,689,701,
723,772,786,863,866
AAT count: 18
AAC: 36,296,405,423,594,614,676,698,755,765,789,873
AAC count: 12
GAT: 30,111,126,215,227,399,434,591,625,735,834
GAT count: 11
GAC: 15,96,183,191,263,305,384,441
GAC count: 8
TGT: 41,77,275,372,431,494,545,881
TGT count: 8
TGC: (0)
CAA: 46,347,548,673
CAA count: 4
CAG: 387,428,598
CAG count: 3
GAA: 208,233,353,416,820
GAA count: 5
GAG: 249,562
GAG count: 2
GGT: 12,177,331,731
GGT count: 4
GGC: (0)
GGA: 159,221,486,825
GGA count: 4
GGG: 654
GGG count: 1
CAT: 23,118,266,302,335,341,395,410,511,531,569,808,848
CAT count: 13
CAC: 476,508,664,668,751
CAC count: 5
ATT: 461,792,813,859
ATT count: 4
ATC: 242,375
ATC count: 2
ATA: (0)
CTT: 69,123,174,255,309,369,522,579,842
CTT count: 9
CTC: 454,608,661
CTC count: 3
CTA: 153,618,886
CTA count: 3
CTG: 180
CTG count: 1
TTA: 290,805
TTA count: 2
TTG: 559,716,779
TTG count: 3
AAA: 5,402,869
AAA count: 3
AAG: (0)
ATG: 381
ATG count: 1
TTT: 437
TTT count: 1
TTC: 52,518,851
TTC count: 3
CCT: 279,293,566,878
CCT count: 4
CCC: (0)
CCA: 33
CCA count: 1
CCG: (0)
TCT: 230,845
TCT count: 2
TCC: (0)
TCA: 321
TCA count: 1
TCG: (0)
AGT: 218,356,713,744,775
AGT count: 5
AGC: (0)
ACT: 104,413,534
ACT count: 3
ACC: 344
ACC count: 1
ACA: 198
ACA count: 1
ACG: (0)
TGG: 633
TGG count: 1
TAT: 795
TAT count: 1
TAC: (0)
GTT: 90
GTT count: 1
GTC: (0)
GTA: (0)
GTG: (0)
TAA: (0)
TAG: (0)
TGA: 611,738,758
TGA count: 3
47) Codon Usage Bias:
About: Western equine encephalomyelitis virus strain 71V-1658 nonstructural polyprotein and structural polyprotein genes, complete cds (11484bp)
VERSION: AF214040.1
CODONS & LOCATIONS:
GCT: 52,171,254,283,375,516,548,616,681,714,788,860,978,
1003,1101,1271,1274,1277,1282,1395,1406,1419,1425,
1428,1431,1459,1493,1507,1519,1557,1696,1888,1959,
2218,2311,2314,2334,2406,2409,2474,2589,2629,2718,
2758,2794,2895,2899,2929,2953,3022,3053,3064,3099,
3226,3294,3370,3712,3729,3742,3778,3792,3796,3836,
3960,4006,4048,4057,4069,4072,4132,4135,4156,4168,
4191,4204,4254,4261,4294,4323,4393,4430,4547,4678,
4694,4730,4765,4801,4810,4832,4862,4908,4954,5094,
5100,5123,5135,5182,5227,5234,5247,5297,5389,5467,
5527,6071,6100,6113,6131,6199,6205,6342,6378,6541,
6556,6562,6612,6673,6745,6798,6906,6940,7059,7185,
7194,7424,7490,7527,7558,7580,7584,7587,7686,7817,
7862,7932,7988,8017,8139,8180,8264,8273,8314,8348,
8384,8387,8584,8679,8736,8873,9085,9208,9240,9311,
9332,9404,9539,9552,9558,9588,9632,9676,9696,9782,
9799,9802,9811,10048,10144,10194,10242,10245,10368,
10409,10443,10484,10491,10523,10526,10677,10719,10762,
10827,10872,10967,10995,11090,11093,11155,11162,11258,
11306
GCT count: 191
GCC: 59,136,142,225,269,355,433,650,896,1024,1180,1216,
1320,1351,1379,1388,1412,1471,1543,1548,1812,2075,
2184,2389,2393,2422,2492,2575,2667,2986,3012,3072,
3082,3088,3273,3434,3441,3585,3629,3864,3877,4128,
4149,4230,4264,4411,4465,4509,4630,4642,4662,4739,
4787,4855,4878,4995,5004,5040,5128,5146,5250,5349,
5362,5441,5490,5624,5689,5710,5717,5767,6010,6085,
6141,6157,6168,6387,6519,6618,6751,6877,6985,7051,
7156,7209,7238,7241,7306,7340,7369,7406,7555,7565,
7574,7652,7655,7667,7694,7709,7731,7751,7825,7842,
7914,8327,8416,8420,8476,8498,8509,8701,8713,8884,
8916,8939,8944,9111,9149,9226,9248,9447,9482,9597,
9616,9623,9686,9818,9844,9861,9884,9938,10096,10258,
10319,10355,10365,10506,10532,10655,10905,10942,11013,
11248,11255
GCC count: 143
GCA: 109,114,156,163,238,313,367,400,423,460,481,490,583,
637,677,792,939,962,1057,1081,1134,1155,1256,1329,
1453,1482,1500,1522,1588,1608,1615,1621,1792,1873,
1932,1942,2035,2062,2143,2146,2266,2352,2383,2398,
2413,2522,2543,2558,2670,2761,2766,2832,2844,2867,
2879,2970,2995,3015,3111,3126,3138,3166,3182,3238,
3258,3310,3338,3362,3515,3548,3725,3805,3832,3911,
3923,3997,4040,4079,4111,4182,4258,4274,4337,4352,
4368,4377,4475,4555,4559,4586,4654,4686,4724,4902,
4916,4919,5008,5074,5190,5216,5290,5373,5428,5473,
5495,5757,5786,5821,5855,5953,5975,6064,6126,6138,
6202,6221,6265,6295,6299,6363,6394,6397,6400,6435,
6497,6528,6544,6827,6843,6944,7011,7087,7105,7151,
7160,7168,7246,7251,7261,7336,7394,7454,7468,7724,
7727,7747,7904,7936,7991,8030,8040,8128,8157,8167,
8431,8485,8574,8595,8599,8686,8784,8800,8933,9010,
9049,9064,9088,9096,9106,9164,9182,9194,9274,9294,
9339,9345,9351,9459,9485,9515,9571,9576,9585,9592,
9603,9636,9645,9660,9679,9756,9766,9777,9814,9834,
9927,10009,10066,10071,10137,10204,10218,10224,10276,
10289,10350,10476,10510,10569,10616,10626,10685,10716,
10765,10773,10780,10791,10912,10915,10933,10950,10975,
10990,11064,11097,11112,11152,11241,11292,11299,11311
GCA count: 230
GCG: 81,148,182,364,928,944,981,986,1034,1186,1201,1248,
1488,1525,1628,1673,1714,1738,1756,1849,2052,2116,
2248,2453,2471,2604,2755,2778,2786,2973,2999,3058,
3148,3327,3349,3491,3536,3701,3764,3826,4012,4106,
4244,4279,4299,4484,4759,4815,4837,4898,4940,4975,
5083,5105,5108,5153,5166,5197,5335,5344,5533,5545,
5593,5599,5830,5835,5962,6040,6237,6262,6326,6409,
6516,6572,6607,6649,6664,6692,6718,6734,6760,6817,
6820,6976,6980,6995,7039,7232,7266,7376,7846,7911,
7957,8002,8086,8095,8101,8171,8269,8296,8604,8779,
8952,8976,8983,9040,9068,9121,9299,9335,9395,9466,
9666,9838,9873,9912,10051,10083,10099,10108,10179,
10262,10312,10458,10465,10661,10665,10887,10972,11061,
11188,11205,11234
GCG count: 133
CGT: 39,62,74,86,228,437,640,784,804,873,1013,1065,1119,
1204,1213,1581,1896,1917,2019,2299,2358,2427,2580,
2847,2853,3048,3122,3234,3335,3449,3456,3674,3734,
3853,3900,4062,4287,4575,4818,4944,5019,5047,5114,
5138,5204,5210,5241,5259,5353,5566,5653,5924,5972,
6068,6225,6357,6431,6459,6595,6722,6955,6971,7020,
7352,7364,7442,7773,7880,7961,8069,8245,8287,8309,
8345,8360,8396,8479,8528,8622,8706,8765,8804,8861,
8888,8911,9017,9059,9235,9413,9745,9904,9962,10001,
10184,10300,10394,10553,11175,11327
CGT count: 99
CGC: 3802,5714,9629,9924,9935,10286,11252
CGC count: 7
CGA: 16,105,189,342,494,557,608,621,890,1227,1230,1398,
1642,1809,1892,1905,1971,2025,2038,2109,2121,2137,
2325,2598,2742,2814,2964,2976,2982,3104,3612,3810,
3993,4120,4185,4360,4398,4461,4488,4615,5012,5462,
5556,5721,5727,5800,5886,6036,6500,6639,6741,6789,
6860,6999,7026,7215,7293,7323,7522,7533,7595,7612,
7638,7741,7767,7810,7943,8074,8110,8231,8278,8334,
8342,8351,8363,8378,8427,8438,8537,8554,8636,8642,
8776,8894,9026,9073,9130,9217,9259,9319,9640,9866,
9920,10061,10187,10424,10608,10867,10939,11045,11216,
11227,11274,11285
CGA count: 104
CGG: 193,293,307,654,743,909,1392,1821,1950,2082,2169,2615,
2940,3636,3951,4098,4161,4238,4406,5060,5408,5434,
5584,5615,5686,5930,6060,6583,6710,6891,6961,7289,
7795,7853,8014,8036,8176,8834,9229,9649,9895,9958,
9970,10332,10682,11191
CGG count: 46
AGA: 31,48,101,145,179,232,288,298,319,326,347,396,404,
429,471,625,663,674,707,710,731,765,768,772,841,884,
920,972,989,1040,1138,1236,1289,1295,1316,1340,1503,
1512,1530,1537,1569,1575,1584,1596,1611,1634,1677,
1682,1798,1839,1863,1883,1924,1974,1985,1994,2007,
2013,2055,2058,2094,2132,2228,2232,2252,2296,2438,
2564,2612,2646,2676,2701,2723,2871,2891,2918,3035,
3069,3119,3145,3201,3281,3506,3560,3567,3869,3946,
4003,4018,4027,4043,4144,4171,4226,4356,4448,4479,
4515,4625,4712,4746,4755,4841,4845,4989,5043,5071,
5308,5376,5416,5437,5458,5530,5541,5642,5670,5699,
5731,5735,5747,5750,5782,5808,5871,5896,5991,6027,
6078,6109,6122,6144,6151,6176,6240,6255,6287,6351,
6440,6473,6477,6510,6598,6654,6738,6804,7043,7142,
7227,7276,7311,7318,7382,7391,7399,7448,7598,7672,
7675,7678,7681,7717,7720,7735,7801,7927,7969,7982,
8053,8061,8106,8124,8203,8330,8354,8392,8524,8559,
8660,8671,8791,8809,8815,8838,8908,9013,9076,9118,
9170,9398,9438,9490,9606,9609,9710,9857,9952,10159,
10199,10211,10401,10496,10543,10594,10619,10728,10736,
10754,10978,11030,11051,11178,11370
AGA count: 212
AGG: 442,512,522,529,671,703,819,837,867,900,947,1047,1111,
1129,1195,1242,1654,1785,1789,1826,1842,1909,1953,
2000,2187,2193,2255,2278,2287,2290,2317,2551,2554,
2655,2769,2800,3041,3187,3250,3276,3305,3314,3379,
3395,3468,3473,3512,3555,3601,3667,3679,3704,3783,
3844,3890,3914,3941,3978,3988,4083,4092,4209,4241,
4453,4531,4566,4583,4608,4634,4825,4888,4966,5324,
5520,5628,5775,5941,5957,6214,6384,6524,6776,6783,
6855,7436,7551,7605,7608,7658,7760,7856,7886,8078,
8150,8153,8164,8207,8220,8234,8566,8656,8720,8750,
8820,8823,8842,8905,8971,9053,9185,9365,9378,9401,
9451,9853,9994,10133,10322,10342,10390,10405,10454,
10577,10604,10833,10837,10882,11132
AGG count: 128
AAT: 13,22,95,127,139,247,501,534,696,727,756,936,1123,
1141,1152,1299,1335,1467,1566,1723,1773,2198,2205,
2271,2341,2468,2607,2637,2737,2745,2818,2933,3162,
3382,3385,3411,3415,3430,3518,3592,3621,3641,3661,
3814,3883,4066,4075,4124,4152,4216,4311,4442,4458,
4491,4579,4647,4670,4681,4736,4795,4980,4983,5022,
5087,5367,5370,5383,5645,5657,5739,5779,5795,5812,
5878,5902,5916,5934,5995,6032,6190,6217,6234,6271,
6290,6412,6421,6447,6455,6587,6604,6622,6869,6887,
6928,7077,7284,7410,7433,7472,7518,7592,7647,7833,
7892,7899,7921,7978,8160,8367,8373,8404,8513,8519,
8578,8589,8617,8675,8740,9133,9190,9325,9355,9381,
9888,9973,10012,10045,10141,10308,10586,10643,10748,
10953,10999,11024,11245,11303,11324,11389,11448,11479
AAT count: 141
AAC: 9,390,577,604,643,658,689,719,753,829,1088,1105,1147,
1159,1208,1332,1436,1440,1448,1733,1760,1921,1963,
2079,2163,2260,2362,2432,2465,2482,2509,2571,2620,
2691,2714,2876,3091,3172,3268,3408,3480,3682,3695,
3757,3768,3919,3967,3984,4088,4235,4291,4332,4439,
4543,4666,4922,4992,5016,5030,5034,5142,5200,5331,
5510,5513,5570,5578,5619,5639,5663,5753,5938,6024,
6104,6331,6345,6428,6503,6677,6794,6903,6916,6966,
7003,7063,7146,7202,7273,7494,7542,7620,7633,7699,
7744,7756,7821,7870,8008,8025,8121,8199,8242,8302,
8495,8762,8927,8998,9081,9100,9144,9305,9423,9430,
9689,9693,9701,9713,9720,9735,9738,9742,9945,9977,
9986,9990,10168,10419,10450,10599,10622,10671,10745,
10811,10919,11005,11075,11085,11212,11270,11347,11350,
11417
AAC count: 142
GAT: 276,543,1050,1075,1371,1474,1533,2086,2281,2305,2377,
2418,2487,2632,2680,2685,2705,2905,2913,2944,3007,
3025,3253,3265,3373,3453,3484,3494,3531,3607,3799,
4023,4141,4302,4365,4414,4435,4498,4501,4689,5064,
5185,5266,5683,5849,6147,6277,6304,6316,6451,6466,
6547,6576,6661,6727,6765,6768,6882,6936,7035,7046,
7084,7124,7219,7255,7326,7344,7536,7837,7865,7896,
8223,8544,8547,8551,8607,9153,9359,9478,9899,10086,
10296,10358,10488,10636,10700,10713
GAT count: 87
GAC: 43,55,124,130,196,211,334,370,553,849,1044,1078,1219,
1360,1578,1646,1659,1776,1845,2032,2223,2403,2458,
2515,2658,2728,2751,2835,3018,3107,3142,3208,3355,
3460,3646,3937,3964,4033,4051,4164,4504,4522,4562,
4806,5161,5357,5499,6049,6372,7138,7171,7427,7625,
8118,8213,8324,8442,8453,8488,8649,8695,8754,9212,
9290,9314,9342,9612,9620,10004,10152,10335,10383,10515,
10704,10776,10794,10830,10840,10901,11016,11182,11199,
11262
GAC count: 83
TGT: 66,159,262,386,416,456,474,569,779,844,855,1007,1017,
1071,1116,1368,1443,1741,1833,1857,1989,2044,2072,
2241,2322,2369,2450,2531,2568,2626,2695,2883,3029,
3096,3287,3320,3522,3604,3633,3657,3772,3859,3954,
4103,4115,4176,4328,4385,4592,4658,4697,4718,4790,
4874,4931,5026,5037,5172,5319,5341,5883,5890,5910,
6019,6094,6249,6280,6369,6404,6480,6644,6786,6840,
6896,6912,7017,7117,7358,7777,7850,7939,8135,8144,
8282,8502,8629,8731,8759,8831,8851,8989,9030,9036,
9389,9530,9536,9543,9548,9673,9727,9763,9785,9793,
9881,10112,10126,10149,10304,10412,10538,10674,10724,
10845,10898,11101,11126,11129,11143,11219,11277,11315,
11459,11470
TGT count: 123
TGC: 222,2263,4829,5764
TGC count: 4
CAA: 69,167,199,304,573,800,879,1084,1108,1422,1782,1803,
1902,1947,2154,2211,2462,2601,2663,2673,2733,2805,
2811,3135,3344,3465,4054,4307,5078,5194,5285,5486,
5927,6119,6187,6483,7101,7770,8423,8717,9126,9269,
10038,10078,10473,10566,10823,10947,11072
CAA count: 49
CAG: 1172,1183,1670,1711,1870,2330,3359,4316,4742,4849,
4895,4912,4925,4937,5055,5294,5398,5420,5480,5648,
6005,6538,6698,7504,8046,8185,8260,8456,8592,8663,
8768,8936,8980,9178,9220,9253,9433,9463,9520,9759,
10021,10768,10818,10849,11058,11295
CAG count: 46
GAA: 28,218,316,379,452,634,686,816,1233,1540,1591,1729,
2496,2527,2781,2850,3045,3880,4179,4881,4905,5302,
5590,5817,6354,6381,6390,6706,6958,7069,7199,7258,
7302,7372,7763,7784,8090,8357,8869,9322,10250,10529,
10647,11231,11289
GAA count: 45
GAG: 957,1252,1878,1912,2124,2180,2244,2380,3197,4675,4750,
5277,5338,5548,6307,6947,7163,7562,7791,7950,8131,
9408,10172,10176,10434
GAG count: 25
GGT: 117,586,748,993,1095,1126,1176,1245,1324,1624,1688,
1770,2065,2091,2238,2346,2445,2709,2902,3215,3366,
3420,3437,3528,3577,4030,4348,4527,5175,5789,6054,
6531,6863,6874,7096,7134,8189,8210,8248,8470,8876,
8920,9137,9265,9420,9566,9730,9830,9917,9930,10054,
10800,10803,11147,11238,11382
GGT count: 56
GGC: (0)
GGA: 1224,1479,1618,2888,2961,4605,5150,5213,5238,5553,
5596,6057,6513,7403,7738,8534,9850,10440,10591,10652,
11109
GGA count: 21
GGG: 1795,3116,3618,4000,4445,4707,7120,8058,9329,9392,
10129,11106
GGG count: 12
CAT: 133,174,235,241,259,351,410,487,497,735,852,876,1304,
1308,1364,1602,1650,1751,1830,1938,2102,2166,2208,
2274,2373,2503,2512,2536,2640,2643,2748,2957,3131,
3390,3425,3573,3581,3597,3685,3819,3839,3934,4194,
4197,4201,4269,4284,4373,4422,4518,4598,4621,4638,
4651,4701,4784,4865,4868,5315,5445,5450,5562,5612,
5695,5841,5858,5867,5948,6164,6182,6418,6462,6580,
6628,6714,6836,6933,7205,7329,7347,7480,7804,7814,
7973,8216,8293,8410,8646,8689,8797,8865,8924,8930,
8993,9197,9202,9373,9426,9474,9494,9497,9510,9533,
9580,9723,9808,9870,9967,10025,10093,10346,10386,10397,
10499,10547,10630,10688,10732,10926,10936,11021,11037,
11116,11123,11320,11341
CAT count: 126
CAC: 92,120,250,426,508,762,776,811,834,933,969,1028,1376,
1637,1706,1747,2004,2099,2561,2586,2652,2822,2864,
2921,2949,3155,3323,3445,3487,3588,3688,3709,3718,
3721,3748,3751,3822,3873,3928,4381,4389,4401,4419,
4471,4537,4769,4774,4778,4949,4960,5000,5090,5132,
5262,5272,5312,5453,5516,5632,6685,6688,6920,7029,
7413,7451,7463,7501,7642,7663,7873,7985,7997,8011,
8192,8251,8305,8320,8338,8381,8413,8447,8612,8857,
8898,8947,9001,9020,9167,9174,9243,9278,9285,9501,
9527,9656,9878,10017,10033,10163,10215,10236,10280,
10283,10316,10375,10562,10741,10854,10860,10892,10985,
11008,11171,11195,11334,11360,11375,11395,11400,11426
CAC count: 120
ATT: 34,214,337,630,646,738,1092,1167,1462,1719,2029,2989,
3219,3649,4036,4343,4427,4468,4595,5281,5679,5705,
5760,5824,6134,6195,6243,6337,6535,6667,6670,6680,
6702,6754,7081,7093,7279,7907,8317,8482,8794,9159,
9308,9505,9704,9789,9827,10470,10786,10814,11054,11280,
11344,11466
ATT count: 54
ATC: 205,265,1037,1163,1744,2936,3332,3501,3539,3544,3652,
3715,3970,3974,4891,5097,5536,5792,5861,5906,5986,
6044,6625,6748,6832,6991,7129,7314,8540,8562,8652,
8682,8772,8965,9561,10361,10574,10707,11078
ATC count: 39
ATA: 465,906,1699,1815,1982,2016,2518,3038,3376,4821,5050,
6172,6179,6366,6506,7006,8956,9626,9907,10266,10271,
10518,10959,11139,11202,11330,11356,11392,11423
ATA count: 29
CTT: 322,447,563,599,667,700,796,924,954,998,1261,1356,
1554,1691,1702,1866,2022,2478,2592,2773,2860,3004,
3078,3177,3192,3241,3245,3897,3906,4249,4550,5379,
5393,5404,5635,5979,6089,6252,6321,6553,6568,6636,
6772,6780,6801,6900,7032,7055,7113,7386,7602,7946,
8399,8632,8709,8726,9004,9140,9156,9555,9942,9982,
10030,10120,10379,10427,11136,11223,11411,11430,11441,
11455
CTT count: 72
CTC: 407,413,693,1997,2010,2128,2150,2366,2547,2583,2829,
3402,4572,5118,5477,5574,6491,6632,7023,7175,7355,
7417,7486,7546,7705,8492,8570,8746,9282,9750,9772,
10328,10481,10807,11385
CTC count: 35
CTA: 4,272,301,359,504,591,596,722,759,1265,1311,2175,2338,
2435,2595,2826,3230,3399,3626,4223,5157,5207,5222,
5412,5675,5919,6002,6209,6424,6469,6847,6851,6952,
7110,7430,7458,7513,7690,7702,8021,8462,9023,9044,
9091,9370,9524,10207,10227,10559,10923,11158,11266,
11338
CTA count: 53
CTG: 540,612,1054,1061,1562,1967,2201,2840,2910,2967,3158,
3169,3205,3261,3754,3761,3887,4495,5231,5255,5771,
5846,6312,6601,7333,8115,8239,8466,8692,8788,9007,
9443,9948,10293,10338
CTG count: 35
TTA: 537,566,1382,1665,2048,2790,2857,2924,3848,4569,5743,
5945,5966,6015,6488,6866,7190,7297,7379,7508,8065,
8257,8434,8891,9663,10042,10415,10759,10930,11365,
11444,11475
TTA count: 32
TTG: 98,208,917,1685,6808,7788,8195,8901,9717,10105,10633,
10878,11081
TTG count: 13
AAA: 329,822,913,1572,2539,5803,5969,6375,6730,7074,7179,
7713,7889,8516,8812,8879,9600,10230,11040,11414
AAA count: 20
AAG: 185,279,965,1343,1662,1763,2041,2214,2441,3061,3563,
3739,4969,5503,7182,7828,7859,8826,8986,9033
AAG count: 20
ATG: 25,580,1402,2293,2302,2992,3290,3788,7066,7269,8050,
8667,9416,10446,10582,11379
ATG count: 16
TTT: 151,951,1031,1189,1899,2113,2386,2506,3615,4138,4219,
4934,5401,6268,6657,7476,7497,7569,7628,9384,9670,
9805,9821,9824,10102,10371,10751,10783,10797,10956,
10963,11068,11451,11462
TTT count: 34
TTC: 89,808,1285,2105,2190,2698,3222,3551,3893,4095,4618,
4781,4852,5067,5483,6258,6283,6823,7807,8505,9232,
9682,9769,9892,10191,10325,10461,10535,11482
TTC count: 29
CCT: 1348,1599,1929,2069,3498,4602,4704,5328,6334,8698,
8962,10058,10075,10431,10613,10710,11120
CCT count: 17
CCC: 560,1292,1854,2160,2355,3671,4213,4963,6230,6550,7223,
7577,7965,8227,9470,10556,10691
CCC count: 17
CCA: 468,1021,1385,1818,1935,2140,2623,4009,4540,4721,4733,
5244,5431,7361,7539,7877,8033,8370,8639,10550,10864,
11034,11048
CCA count: 23
CCG: 1456,5425,6097,6494
CCG count: 4
TCT: 826,1485,2235,2688,4340,4762,4986,5111,5609,5724,6075,
6615,6988,8147,8473,9223,9841,10658,10668
TCT count: 19
TCC: 19,244,1192,1409,3032,3405,4727,4871,4928,5219,5269,
5470,6161,8290,8459,8854,9205,9796,10857
TCC count: 19
TCA: 383,893,1779,1860,3341,6154,9256,9955,10123
TCA count: 9
TCG: 6757,8581,9456,10255
TCG count: 4
AGT: 525,1515,1726,1806,2157,2172,2499,2808,3075,3211,3317,
3698,3957,4512,4589,5523,5702,5874,5982,6591,6924,
7212,7445,7616,8081,8845,8959,9103,9262,9997,10155,
10502,10981
AGT count: 33
AGC: 1956
AGC count: 1
ACT: 903,1144,1239,1767,1979,3152,5386,5838,6415,8450,8848,
11353,11420
ACT count: 13
ACC: 1,393,1551,1836,3692,4188,4320,5507,5913,5999,6116,
6246,6444,6559,6695,7235,7483,9302,9653,10117
ACC count: 20
ACA: 78,1497,2979,3284,3931,4612,5179,5667,5827,6082,7798,
8005,8098,8299,8626,9115,9348,10090,10239,10895
ACA count: 20
ACG: 3085,7421,7954
ACG count: 3
TGG: 1098,1198,1268,1631,5852,7014,8968,9707,9753,9847,
11027
TGG count: 11
TAT: 310,420,1605,4859,5587,5864,7781,9056,10437
TAT count: 9
TAC: 478,975,2649,3477,4015,4798,4885,4972,5893,6348,6360,
6565,7530,9362
TAC count: 14
GTT: 202,2308,3352,3525,3664,3903,5169,6274,6909,7090,10233,
10875
GTT count: 12
GTC: 484,2797,3570,3745,3856,3981,4534,5692,5899,8043,8407,
8743,10221
GTC count: 13
GTA: 870,1010,1415,2284,4715,4957,5559,5660,7994,8723,10639,
10908,11002,11208
GTA count: 14
GTG: 863,3775,3829,5305,7917,8531
GTG count: 6
TAA: 519,887,2349
TAA count: 3
TAG: 1068,8254
TAG count: 2
TGA: 3509,5581,7439,7883,7924,11185
TGA count: 6
48) Codon Usage Bias:
About: GB virus C gene for polyprotein, complete cds, isolate: G05BD (8930bp)
VERSION: AB003292.1
CODONS & LOCATIONS:
GCT: 127,218,280,322,415,464,582,608,649,683,706,941,952,
1027,1071,1174,1200,1277,1374,1432,1570,1589,1795,
1810,1897,1939,2029,2032,2071,2095,2110,2135,2153,
2165,2171,2195,2268,2311,2315,2324,2332,2357,2380,
2387,2397,2459,2481,2499,2513,2656,2671,2677,2711,
2722,2725,2751,2756,2783,2809,2828,2890,2973,2994,
3083,3134,3194,3229,3232,3254,3350,3535,3575,3647,
3767,3982,4010,4017,4030,4049,4206,4315,4523,4556,
4565,4655,4685,4722,4756,4855,4861,4956,5251,5261,
5267,5291,5305,5309,5313,5316,5362,5414,5438,5459,
5465,5514,5519,5533,5543,5623,5675,5678,5746,5788,
5830,5842,5851,5880,5923,6053,6153,6226,6268,6339,
6393,6425,6428,6434,6494,6540,6668,6674,6695,6843,
6932,6962,7012,7032,7056,7082,7091,7095,7153,7173,
7217,7235,7460,7523,7533,7730,7738,7766,7777,7787,
7831,7887,7919,7933,7940,8091,8143,8153,8166,8225,
8286,8296,8300,8396,8467,8647,8662,8670,8716,8740,
8744,8776,8795,8877,8905,8917
GCT count: 179
GCC: 14,58,94,115,170,190,223,251,283,314,333,340,349,434,
440,449,455,506,528,543,586,616,629,632,657,692,756,
845,883,912,995,1013,1019,1039,1048,1099,1152,1177,
1181,1188,1227,1246,1257,1319,1332,1366,1379,1394,
1457,1480,1484,1516,1564,1594,1622,1650,1745,1753,
1789,1851,1873,1923,2017,2149,2162,2190,2208,2214,
2241,2277,2286,2336,2367,2447,2471,2549,2574,2593,
2615,2627,2641,2688,2737,2748,2795,2837,2886,2906,
2957,2960,2979,2998,3012,3061,3137,3219,3272,3287,
3311,3340,3375,3413,3420,3461,3589,3614,3631,3668,
3682,3779,3786,3905,3957,3963,4043,4182,4211,4215,
4241,4247,4429,4517,4543,4632,4646,4670,4689,4696,
4750,4798,4803,4830,4839,4882,4895,4899,4969,4986,
5015,5099,5143,5171,5198,5276,5282,5333,5384,5394,
5400,5426,5429,5452,5468,5525,5540,5552,5563,5591,
5606,5645,5682,5735,5766,5780,5894,5918,5931,5937,
5957,5974,6033,6065,6072,6150,6208,6231,6299,6352,
6408,6439,6508,6513,6580,6650,6658,6661,6712,6768,
6778,6814,6889,6980,7001,7127,7277,7286,7291,7306,
7403,7448,7466,7470,7516,7526,7565,7586,7688,7695,
7793,7865,7880,7946,7973,7991,8023,8082,8185,8207,
8214,8219,8248,8276,8325,8356,8402,8517,8560,8576,
8636,8665,8693,8735,8751,8769,8864,8900
GCC count: 236
GCA: 75,161,256,307,337,378,404,481,561,621,788,838,938,
958,1006,1077,1193,1369,1386,1397,1464,1494,1641,1656,
1806,1835,1934,1950,1981,1987,2004,2145,2246,2370,
2465,2506,2571,2873,2943,3052,3207,3369,3520,3524,
3692,3702,3736,3822,3916,4075,4132,4164,4168,4304,
4439,4453,4467,4512,4604,4643,4652,4708,4727,4826,
4872,4940,4991,5004,5070,5119,5159,5288,5369,5499,
5504,5510,5804,5868,6042,6097,6196,6235,6412,6456,
6476,6488,6553,6665,6671,6715,6741,6818,6840,6877,
7146,7162,7182,7222,7457,7476,7499,7899,7980,8108,
8261,8312,8363,8431,8477,8493,8591,8609,8640,8699,
8712,8761
GCA count: 116
GCG: 62,65,227,327,330,371,537,599,613,726,746,898,933,
1082,1093,1123,1206,1293,1329,1416,1491,1504,1554,
1559,1666,1842,1847,1885,1909,2000,2023,2075,2081,
2186,2364,2490,2554,2590,2648,2699,2734,2791,2869,
2903,2976,2985,3008,3018,3105,3202,3380,3558,3572,
3799,3806,3848,3856,3925,3948,4020,4156,4193,4200,
4226,4420,4433,4456,4459,4489,4502,4534,4673,4737,
4740,4771,4959,4964,4997,5189,5195,5214,5329,5381,
5406,5417,5420,5462,5490,5585,5610,5652,5664,5762,
5771,6102,6344,6382,6482,6519,6562,6683,6698,7047,
7328,7399,7574,7759,7772,7816,7969,8031,8072,8111,
8119,8240,8490,8594,8652,8675,8704,8725,8748,8869,
8881
GCG count: 124
CGT: 121,130,133,175,186,259,277,424,565,688,783,967,1096,
1132,1306,1351,1407,1420,1423,1475,1488,1577,1600,
1716,1767,2224,2409,2424,2529,3001,3073,3175,3280,
3357,3366,3457,3482,3538,3544,3714,3759,3859,4013,
4294,4381,4635,4925,4951,5113,5566,5569,5837,5950,
6076,6184,6285,6468,6485,6574,6594,6803,6861,6865,
6949,6958,7018,7087,7348,7429,7598,7673,7915,8049,
8137,8229,8499,8572,8911
CGT count: 78
CGC: 72,753,4312,4693,7274
CGC count: 5
CGA: 118,166,474,578,793,962,1348,1438,1519,1628,1758,2644,
2695,2911,3078,3098,3263,3297,3343,3406,3514,3628,
3705,4147,4384,4449,4624,4627,4714,4915,4928,5238,
5847,5945,5983,6451,6610,6637,6688,7156,7891,8199,
8684
CGA count: 43
CGG: 78,101,179,291,362,520,664,675,709,768,1023,1087,1159,
1231,1273,1402,1410,1525,1535,1550,1662,1709,1771,
1821,1857,1927,1947,1960,2318,2376,2383,2493,2561,
2581,2759,2930,2934,3034,3087,3101,3144,3149,3226,
3409,3687,3776,3864,3896,4060,4161,4285,4323,4333,
4470,4481,4486,4540,4784,4809,4933,5130,5166,5223,
5242,5322,5434,5494,5631,5814,5858,5874,6062,6136,
6178,6258,6277,6328,6462,6505,6532,6621,6627,6834,
6897,7007,7077,7409,7445,7551,7626,7724,7755,8013,
8233,8317,8343,8351,8366,8444,8483,8508,8584,8720,
8728
CGG count: 104
AGA: 34,143,813,827,1110,1344,1894,2820,3046,3157,3401,
3439,3563,3618,3699,3718,4095,4288,4309,4475,4616,
5047,5092,5134,5175,5185,5271,5927,6036,6056,6121,
6147,6181,6304,6598,6631,6646,6721,6772,6793,6837,
6847,6852,6855,6919,7023,7041,7044,7116,7225,7360,
7581,7669,7683,7717,7750,7827,7851,7854,7909,7924,
7930,7960,8034,8133,8181,8321,8622,8688
AGA count: 69
AGG: 22,45,86,112,238,263,267,368,513,652,714,806,1009,
1113,1126,1607,1647,1977,1992,2084,2178,2525,2539,
2586,2718,2831,2880,2951,2963,3024,3067,3111,3169,
3435,3444,3468,3529,3578,3652,3663,3991,3995,4001,
4151,4229,4256,4263,4281,4374,4377,4462,4703,4836,
4865,4890,4944,5061,5084,5205,5444,5536,5572,5661,
5704,5721,5758,5969,5979,5988,5994,6108,6118,6204,
6315,6348,6569,6588,6701,6735,6882,6937,6942,7140,
7341,7373,7376,7386,7451,7454,7494,7505,7545,7557,
7605,7618,7653,7656,7677,7680,7823,8017,8045,8100,
8520,8600,8643,8806
AGG count: 107
AAT: 108,197,213,304,397,697,851,867,1705,1913,2126,2290,
2895,3293,3532,3954,4087,4117,4218,4238,4273,4443,
4585,4821,4844,5087,5154,5350,5834,6021,6191,6415,
6692,7105,7111,7200,7364,7422,7609,7741,7811,7845,
8002,8309,8541,8629,8791,8850
AAT count: 48
AAC: 138,356,497,776,1236,1604,1612,1799,1802,2249,2601,
2883,3214,3353,3450,3607,3728,3755,3813,3908,4337,
4590,4607,4745,4789,4885,5109,5210,5672,5709,5716,
5807,5810,5818,5889,5966,6220,6263,6558,7015,7188,
7355,7836,8078,8531,8556,8564,8617
AAC count: 48
GAT: 603,859,907,1000,1053,1064,1337,1472,1900,1997,2039,
2065,2233,2272,2344,2350,2402,2436,2518,2779,2954,
3031,3300,3317,3320,3611,3748,3919,3988,4106,4397,
4978,5008,5054,5484,5655,5693,5776,6025,6244,6376,
6479,6613,6653,6775,6926,6998,7539,7595,7877,8159,
8170,8504,8855
GAT count: 54
GAC: 209,234,270,393,575,832,890,916,1057,1148,1288,1508,
1522,1573,1580,1632,1699,1712,1953,2420,2608,2705,
2849,2900,3152,3190,3361,3476,3595,3834,3839,3968,
4072,4343,4351,4355,4390,4423,4573,4595,4600,4658,
4774,4814,4877,5182,5230,5254,5326,5357,5560,5897,
5906,6011,6250,6331,6358,6385,6643,7136,7205,7228,
7270,7331,7382,7390,7418,7433,7621,7642,7927,7952,
8008,8062,8127,8162,8195,8270,8338,8387,8552,8612
GAC count: 82
TGT: 89,104,297,467,500,569,591,736,742,797,924,930,981,
1143,1251,1267,1499,1511,1733,1889,1972,2044,2050,
2055,2181,2199,2256,2259,2299,2304,2452,2534,2621,
2691,2771,2774,2814,2823,2844,2919,2939,3049,3330,
3389,3429,3502,3507,3655,3675,3830,3937,3976,4299,
4348,4358,4446,4528,4717,4765,4779,4794,4849,4936,
5116,5235,5344,5353,5613,5686,5700,5727,5793,5796,
5903,6004,6015,6081,6093,6129,6142,6159,6167,6253,
6355,6370,6402,6448,6724,6758,6781,6970,7026,7036,
7098,7133,7211,7320,7344,7510,7548,7645,7659,7702,
7839,7871,8042,8114,8177,8192,8243,8306,8370,8464,
8754,8757,8820
TGT count: 116
TGC: 503,1454,2568,2745,6030,6405,7143,7862,8474
TGC count: 9
CAA: 352,1156,1702,2509,2558,3129,3223,3599,3739,3819,4188,
5299,5507,6223,6946,6955,6992,7463,7666,7848,8625
CAA count: 21
CAG: 124,243,596,635,1241,1262,1284,1326,1882,1917,2129,
2282,2427,2546,2802,3327,3639,3762,3771,4267,5096,
5178,5264,5742,6379,6604,6680,7296,7799,7894,8383,
8766
CAG count: 32
GAA: 69,533,877,1129,1729,1832,2068,2308,2414,3172,4667,
5246,6281,6762,6908,7648,7733,8104,8633,8928
GAA count: 20
GAG: 431,800,818,903,1357,1446,1586,1785,2078,2227,2390,
2503,2768,3123,3383,3708,4004,4196,4562,4569,5279,
6473,6536,7214,8204,8303,8378,8872
GAG count: 28
GGT: 1,10,27,40,300,345,374,427,540,547,558,760,973,1032,
1168,1301,1314,1363,1426,1679,1686,1726,1863,1904,
2089,2115,2118,2122,2205,2440,2443,2659,2662,2665,
2674,2764,2786,2858,3004,3037,3181,3303,3306,3394,
3425,3486,3495,3725,3809,3931,3940,4024,4033,4112,
4136,4174,4234,4259,4326,4362,4366,4369,4387,4478,
4507,4531,4546,4551,4578,4921,4981,5028,5038,5041,
5066,5122,5220,5375,5389,5546,5600,5626,5668,5730,
5953,5962,6000,6046,6111,6114,6126,6272,6373,6499,
6601,6829,7071,7170,7177,7254,7261,7300,7314,7324,
7370,7481,7762,7966,7997,8005,8020,8037,8056,8156,
8408,8449,8486,8514,8798,8810,8839,8842,8886,8892,
8925
GGT count: 125
GGC: 5603
GGC count: 1
GGA: 646,955,1120,1224,1764,1818,2321,2834,3347,3454,3696,
3796,3893,4912,6133,6618,6790,7108,7578,7912
GGA count: 20
GGG: 247,311,437,643,703,739,810,1106,1203,1443,1653,1860,
2174,2347,2496,2668,3187,3211,3251,3283,3517,3733,
3928,3985,4664,4762,4869,5000,5146,5149,5372,5557,
5588,5642,5658,6018,6105,6164,6247,6786,7536,7747,
7780,7783,7842,8528,8696,8836
GGG count: 48
CAT: 4,400,517,970,991,1220,1254,1390,1530,1542,1547,1696,
1721,2098,2455,2485,2611,2631,2635,2852,2922,2947,
2989,3056,3094,3164,3178,3243,3248,3258,3268,3372,
3397,3679,3793,3879,3943,4090,4276,4405,4411,4806,
4906,4972,5019,5163,5472,5479,5596,5865,6049,6172,
6390,6526,6718,6727,6730,6796,6810,6903,6913,7121,
7249,7266,7317,7415,7520,7592,7699,7955,8095,8149,
8173,8253,8258,8265,8413,8437,8452,8455,8525,8569,
8833,8846,8908
CAT count: 85
CAC: 83,147,154,461,493,733,988,1135,1216,1693,1738,2159,
2916,2926,3238,3276,3498,3551,3568,3583,3622,3625,
3672,3844,3853,3886,4079,4330,4402,4408,4639,4818,
5023,5138,5296,5341,5578,5749,5824,5941,6084,6175,
6364,6523,6634,6747,7051,7281,7351,7486,7804,8065,
8290,8440,8496,8681,8709,8860
CAC count: 58
ATT: 443,720,1813,2012,2468,2841,3070,3802,3867,4177,4251,
4661,4678,5217,5397,5883,6444,6704,6985,7159,8328,
8405
ATT count: 22
ATC: 1196,1413,1659,1942,3816,4063,4139,4244,4318,4902,
5201,5713,5738,7868,8801
ATC count: 15
ATA: 1625,1967,2059,3960,4994,5411,6396,6543,6885,7502,
7727,8189
ATA count: 12
CTT: 7,30,53,193,206,286,359,386,410,421,554,700,976,1042,
1068,1311,1597,1618,1777,1984,2008,2102,2221,2263,
2605,2683,2862,2968,3040,3118,3160,3184,3290,3489,
3658,3789,4123,4171,4394,4610,4619,4681,4700,4975,
5078,5257,5365,5528,5619,5636,5639,5689,5783,5862,
6090,6325,6419,6677,6707,6952,6965,7029,7066,7195,
7240,7393,7561,7613,7633,7638,7663,7720,7884,8088,
8281,8332,8347,8420,8656,8896,8920
CTT count: 81
CTC: 202,274,872,944,947,1035,1435,1828,2105,2361,2474,
2731,2740,2866,3199,3416,3472,3548,3870,3875,3883,
3902,4037,4053,4056,4084,4222,4414,5103,5106,5800,
5914,6059,6068,6200,6217,6291,6309,6548,6583,6751,
6755,6807,6871,6874,7063,7149,7243,7601,8140,8417,
8579,8817
CTC count: 53
CTA: 18,97,671,763,1139,1212,1270,1341,1690,1867,1877,2141,
2237,2799,3826,3889,3912,3972,4068,4098,4495,4498,
5011,5033,6238,6502,6974,7246,7335,7542,7943,7987,
8360,8373,8391,8536,8830
CTA count: 37
CTG: 157,446,723,856,863,895,1165,1469,1637,1676,1761,1782,
1956,2036,2252,2477,2638,3492,4613,5050,6007,6241,
6296,6336,7232,7257,7396,7905,7976,8052,8222,8428,
8549,8787
CTG count: 34
TTA: 638,1749,2339,2521,2652,3752,4126,4833,4948,5226,6214,
7191,7489,7902,7936,8085,8130,8604
TTA count: 18
TTG: 749,779,803,823,842,1117,1171,1297,1583,1683,1838,
2026,2132,2432,2624,2702,2714,3140,3447,4007,4103,
5456,5827,5997,6566,7167,8210,8293,8597,8731
TTG count: 30
AAA: 4730,5909,6516,6977,8659
AAA count: 5
AAG: 1824,7208,7769
AAG count: 3
ATG: 477,509,1060,2855,3021,3464,3782,3951,4581,5582,7185,
7529,7963
ATG count: 13
TTT: 381,660,678,717,886,1184,1281,1931,1964,3115,3899,
4340,6591,7059,7705,8059
TTT count: 16
TTC: 150,524,1090,2294,2327,2353,2393,2805,3027,3479,3642,
3934,4270,4734,5347,5696,6039,6087,6188,6459,7425,
7796,8480,8813
TTC count: 24
CCT: 50,390,490,730,921,1074,1461,2062,2202,2373,2578,3337,
3745,4144,4291,4520,4753,5476,6491,6894,7406,7714,
7744,7808
CCT count: 24
CCC: 318,668,772,1450,1671,1741,1792,2092,3064,3334,3635,
4120,4852,5074,5125,5338,5616,5855,6288,6361,6800,
6858,7569,7630,7691,7708,7711,7857,8425,8434,8458,
8545,8779,8782,8823,8826
CCC count: 36
CCA: 183,1323,2598,2817,3432,4027,6312,6916,6989,7338,8461,
8588
CCA count: 12
CCG: 452,1016,3555
CCG count: 3
TCT: 418,1360,1920,2680,4417,4918,5575,6465,6923,7949,7994,
8146,8335,8511
TCT count: 14
TCC: 626,848,1162,1615,2020,3386,3711,4711,5449,5522,5755,
5871,5886,5991
TCC count: 14
TCA: 1854,2406,2877,3043,3126,3324,4768,5441,6139,6367,
6422,7554
TCA count: 12
TCG: 1567,2211,4436,7303,7436,8399
TCG count: 6
AGT: 230,880,985,1382,2728,2982,3091,3314,3742,4426,4759,
4909,6211,6319,6399,6624,6995,7309,7819,7983,8026,
8069,8075,8122
AGT count: 24
AGC: 4203,6577,8914
AGC count: 3
ACT: 572,1103,4046,4185,4858,5549,6640,6738,6900,8471
ACT count: 10
ACC: 458,1209,1539,1644,2218,3604,5724,6322
ACC count: 8
ACA: 5319,5403,5877,6929,7004,7124
ACA count: 6
ACG: 8273,8773
ACG count: 2
TGG: 294,927,2462,2565,2618,2708,4129,5378,5487,5649,8889
TGG count: 11
TAT: 2230,2543,3722,5081,6607,7130,7790,8237
TAT count: 8
TAC: 4040,5044,5285,5821,5900
TAC count: 5
GTT: 1774,2047,2156,3235,3922,3979,6431,7379
GTT count: 8
GTC: 407,1003,2138,3541,4537,4649,6156,6868,7589,8678
GTC count: 10
GTA: 3108,3998,4492,6744,6765,7412
GTA count: 6
GTG: 37,365,1354,2168,2417,3015,3510,3592,4109,4559,5057,
5192,5302,5423,7101,7367,7874
GTG count: 17
TAA: 7473
TAA count: 1
TAG: 3586,5752,7513
TAG count: 3
TGA: 835,1045,1429,1870,5934,6529,7074
TGA count: 7
49) Codon Usage Bias:
About: Influenza B virus (B/Lee/1940) segment 7, complete sequence (1191bp)
VERSION: NC_002210.1
CODONS & LOCATIONS:
GCT: 30,57,97,148,218,319,347,386,462,469,568,636,720,731,
748,773,819,834,1037
GCT count: 19
GCC: 49,176,208,267,308,377,700,966,1101
GCC count: 9
GCA: 2,8,12,83,88,196,292,358,370,391,444,487,492,512,517,
520,555,580,628,639,673,848,912,1094,1129,1137
GCA count: 26
GCG: 476,1178
GCG count: 2
CGT: 615
CGT count: 1
CGC: 497
CGC count: 1
CGA: 381,547,776
CGA count: 3
CGG: 120,530
CGG count: 2
AGA: 39,69,72,78,129,141,234,240,244,253,264,299,302,323,
334,337,479,544,584,609,612,633,661,683,690,705,728,
787,867,921,939,971,982,1051,1088
AGA count: 35
AGG: 172,250,276,456,523,605,669,693,757,845,894,907,925,
955,1034,1081
AGG count: 16
AAT: 24,45,66,104,155,201,279,312,330,366,441,552,588,592,
597,696,711,742,761,770,797,842,855,860,884,890,897,
903,932,945,959,977,986,1055,1061,1105,1140,1146,1150,
1160
AAT count: 40
AAC: 92,166,180,227,285,288,424,433,452,459,482,574,623,
643,646,725,876,918,974,999,1043,1070,1165
AAC count: 23
GAT: 159,184,558,1047
GAT count: 4
GAC: 136,839,996,1017
GAC count: 4
TGT: 112,272,340,403,416,466,656,708,753,801,928,1114,1143,
1182
TGT count: 14
TGC: (0)
CAA: 190,231,296,619,679,951,963
CAA count: 7
CAG: 1155
CAG count: 1
GAA: 5,100,126,326,355,373,430,602,715,881,1005,1170
GAA count: 12
GAG: 539,653
GAG count: 2
GGT: 116,205,411,561,872,1014,1065
GGT count: 7
GGC: (0)
GGA: 739,1085
GGA count: 2
GGG: 282
GGG count: 1
CAT: 258,352,508,809,825,830,1022
CAT count: 7
CAC: 42,62,109,261,781,942,1111
CAC count: 7
ATT: 132,437,649,1010,1091,1117
ATT count: 6
ATC: 815
ATC count: 1
ATA: 187,214,399,915
ATA count: 4
CTT: 15,19,406,527,765,792,805,1121
CTT count: 8
CTC: 665,822,990
CTC count: 3
CTA: 316,421,734,1125,1187
CTA count: 5
CTG: 536,936
CTG count: 2
TTA: 223,394,472,1133
TTA count: 4
TTG: 35,151,362,852,1030,1077
TTG count: 6
AAA: 162,169,193,247,863,1058,1173
AAA count: 7
AAG: 305
AAG count: 1
ATG: 571,686,1002,1097
ATG count: 4
TTT: 812,1108
TTT count: 2
TTC: 144,564,784,1040
TTC count: 4
CCT: 54,427
CCT count: 2
CCC: (0)
CCA: 237,900
CCA count: 2
CCG: (0)
TCT: 211,993
TCT count: 2
TCC: (0)
TCA: 745
TCA count: 1
TCG: (0)
AGT: 447,676,1025,1073
AGT count: 4
AGC: (0)
ACT: (0)
ACC: (0)
ACA: 577,887
ACA count: 2
ACG: (0)
TGG: 75,123
TGG count: 2
TAT: (0)
TAC: 533,948
TAC count: 2
GTT: (0)
GTC: 27
GTC count: 1
GTA: 343
GTA count: 1
GTG: (0)
TAA: (0)
TAG: (0)
TGA: (0)
50) Codon Usage Bias:
About: Influenza C virus (C/Ann Arbor/1/50) segment 7, complete sequence (935bp)
VERSION: NC_006306.2
CODONS & LOCATIONS:
GCT: 218,312,502,558,630,683,732,740,746,756,927,933
GCT count: 12
GCC: 72,153,266,472,570,678
GCC count: 6
GCA: 2,8,63,112,122,180,201,242,246,327,338,396,420,445,
507,523,607,773,778
GCA count: 19
GCG: 270,616
GCG count: 2
CGT: 142,275,386,414,489,623
CGT count: 6
CGC: (0)
CGA: 32,235,400,635,686
CGA count: 5
CGG: 230
CGG count: 1
AGA: 86,90,95,98,104,128,167,186,197,209,278,292,318,433,
459,495,535,538,561,591,603,713,724,750,804,829
AGA count: 26
AGG: 156,286,584,674,786
AGG count: 5
AAT: 26,46,54,59,80,119,134,260,281,295,332,342,347,437,
441,464,480,528,575,587,595,641,670,702,789,796,855,
863,874,887
AAT count: 30
AAC: 38,50,146,164,321,372,581,707,766,826,844,919
AAC count: 12
GAT: 306,378,547,619,816,832,858
GAT count: 7
GAC: 263,428,720,760
GAC count: 4
TGT: 68,363,403,450,512,517,543,838,869,890,900
TGT count: 11
TGC: (0)
CAA: 23,35,76,227,456,564,660,793,908
CAA count: 9
CAG: (0)
GAA: 5,137,161,382,393,729,753
GAA count: 7
GAG: 249
GAG count: 1
GGT: 13,213,469
GGT count: 3
GGC: (0)
GGA: 194,289,417,699
GGA count: 4
GGG: (0)
CAT: 109,190,408,411,554,819
CAT count: 6
CAC: 358,650,878
CAC count: 3
ATT: 224,303,366,520,694,717,811,852,904
ATT count: 9
ATC: 170,475,666
ATC count: 3
ATA: 204,324,654,736,822,883
ATA count: 6
CTT: 17,175,424,484,763,783,808,866,924
CTT count: 9
CTC: 253,644,657,743
CTC count: 4
CTA: 256,532,848
CTA count: 3
CTG: 115,389,769,800
CTG count: 4
TTA: 610,894,913
TTA count: 3
TTG: 498
TTG count: 1
AAA: 131,149,613,841,916
AAA count: 5
AAG: (0)
ATG: 492,627
ATG count: 2
TTT: 101,309,375,453,599
TTT count: 5
TTC: 20,238,298
TTC count: 3
CCT: 183,369,551,691,930
CCT count: 5
CCC: (0)
CCA: 315
CCA count: 1
CCG: (0)
TCT: 221,647
TCT count: 2
TCC: (0)
TCA: 43
TCA count: 1
TCG: (0)
AGT: 125,663,897
AGT count: 3
AGC: (0)
ACT: (0)
ACC: 710
ACC count: 1
ACA: (0)
ACG: (0)
TGG: 335
TGG count: 1
TAT: (0)
TAC: (0)
GTT: 83,835
GTT count: 2
GTC: 29
GTC count: 1
GTA: (0)
GTG: 567
GTG count: 1
TAA: (0)
TAG: (0)
TGA: 578,638
TGA count: 2
51) Codon Usage Bias:
About: Lymphocytic choriomeningitis virus segment L, complete sequence (6680bp)
VERSION: NC_004291.1
CODONS & LOCATIONS:
GCT: 18,167,175,208,308,352,423,622,721,826,848,864,989,
1141,1163,1171,1410,1472,1543,1551,1687,1877,1883,
2010,2030,2033,2156,2399,2454,2528,2538,2719,2843,
2865,2967,2987,3166,3252,3279,3282,3298,3356,3487,
3713,3773,3900,3920,3978,4022,4093,4128,4140,4214,
4409,4487,4511,4796,4799,4824,4849,4925,4928,4988,
5206,5213,5264,5291,5317,5652,5787,5861,5994,6010,
6176,6190,6326,6370,6494,6509,6632
GCT count: 80
GCC: 271,360,488,694,1303,1366,1489,1518,1618,1702,2195,
2337,2344,2407,2590,2784,3031,3604,3848,3865,4114,
4238,4281,4353,4575,4858,5022,5041,5051,5198,5463,
5636,5665,5714,5790,5809,5971,6058,6254,6260,6282,
6515,6528,6648
GCC count: 44
GCA: 2,30,104,178,195,211,402,406,498,703,760,892,900,936,
950,973,1180,1287,1331,1358,1462,1469,1562,1603,1731,
1857,1913,1944,2088,2235,2270,2309,2371,2442,2483,
2685,2760,3045,3094,3113,3123,3149,3155,3161,3366,
3383,3522,3583,3685,3701,3707,3744,3881,3893,3946,
4143,4209,4272,4287,4502,4629,4788,4809,4864,4879,
4969,5086,5118,5165,5190,5515,5530,5583,5602,5658,
5735,5804,5826,5912,6357,6410,6541,6556,6568,6595,
6669
GCA count: 86
GCG: 429,657,1266,2436,3129,3548,3662,3925,3964,4090,4294,
5261,5477,6622,6637
GCG count: 15
CGT: 462,2564,3206,3259,5028
CGT count: 5
CGC: (0)
CGA: 6,224,227,614,698,905,953,1096,1328,1417,1432,1844,
2499,2735,3035,3719,3769,5125,5518,5571,5763,6098,
6414,6626,6659
CGA count: 25
CGG: 626,1337,1705,2554,2642,2671,2763,3668,4048,4570,4601,
4974,6643
CGG count: 13
AGA: 50,57,80,91,138,188,202,314,370,373,416,455,491,513,
556,569,585,604,653,768,771,779,796,808,924,940,967,
985,1015,1038,1044,1187,1200,1215,1236,1361,1390,1442,
1466,1477,1486,1494,1497,1554,1584,1598,1607,1643,
1663,1666,1673,1766,1790,1812,1832,1900,1921,1955,
2014,2037,2071,2143,2162,2167,2252,2278,2294,2390,
2395,2411,2447,2495,2557,2568,2597,2631,2654,2657,
2667,2675,2705,2708,2711,2738,2769,2772,2798,2804,
2860,2874,2891,2912,2915,2984,3020,3040,3060,3076,
3100,3200,3203,3210,3220,3308,3311,3416,3449,3452,
3674,3794,3811,3822,3928,3969,3974,4000,4158,4235,
4262,4329,4403,4422,4431,4440,4482,4535,4547,4560,
4592,4610,4613,4683,4721,4728,4747,4756,4792,4805,
4831,4890,4946,4962,5018,5137,5149,5193,5203,5275,
5343,5387,5533,5627,5645,5710,5771,5920,5980,6031,
6035,6039,6042,6077,6117,6125,6146,6198,6216,6232,
6274,6297,6331,6379,6420,6446,6479,6483,6518,6603
AGA count: 178
AGG: 85,129,154,275,348,411,660,687,835,957,1041,1106,1209,
1228,1240,1252,1263,1574,1683,1743,1771,1852,1863,
1989,1993,2017,2074,2140,2230,2248,2321,2387,2650,
2663,2743,2778,2781,2795,2825,2855,2974,3137,3338,
3423,3441,3508,3554,3644,3786,4017,4051,4134,4177,
4326,4450,4474,4494,4671,4690,4782,4874,4902,4933,
5132,5221,5284,5331,5427,5548,5592,5689,5724,5842,
5876,5940,5967,5987,6025,6072,6091,6133,6293,6337,
6367,6466,6535,6564,6610,6615,6652
AGG count: 90
AAT: 41,185,245,263,318,376,397,449,477,508,552,644,672,
680,743,790,838,979,1032,1056,1099,1116,1155,1212,
1255,1292,1300,1384,1403,1421,1449,1566,1571,1625,
1718,1757,1782,1880,1905,1976,2045,2092,2098,2109,
2173,2206,2273,2297,2328,2348,2378,2478,2490,2509,
2524,2549,2690,2756,2787,2817,2894,2940,2953,3116,
3120,3126,3142,3171,3178,3231,3268,3291,3361,3431,
3446,3501,3511,3519,3533,3543,3586,3596,3620,3633,
3741,3754,3815,3836,3887,3897,4072,4078,4105,4147,
4153,4221,4259,4268,4290,4314,4356,4383,4464,4518,
4525,4530,4585,4620,4647,4653,4658,4774,4899,4908,
5232,5251,5350,5372,5466,5503,5560,5575,5630,5674,
5703,5727,5784,5833,5894,5916,5925,5944,5974,6055,
6312,6458,6559,6584
AAT count: 138
AAC: 72,109,114,133,219,242,393,501,529,546,665,708,714,
747,801,816,858,884,932,1005,1024,1090,1123,1348,1456,
1523,1527,1538,1630,1890,1895,2051,2159,2223,2315,
2364,2367,2403,2424,2460,2520,2572,2679,2748,2809,
2852,2936,3051,3193,3320,3403,3498,3564,3640,3695,
3778,3797,3800,3939,4101,4246,4256,4389,4453,4469,
4498,4557,4638,4762,4815,4868,4893,4940,4985,5005,
5122,5142,5156,5172,5238,5325,5382,5434,5545,5588,
5697,5817,5865,5998,6300,6399,6430,6469
AAC count: 93
GAT: 10,25,36,149,297,311,468,474,675,726,729,774,830,867,
873,876,920,1062,1085,1119,1158,1734,1787,1799,1808,
1824,1940,1980,2000,2132,2281,2431,2700,2943,3081,
3104,3504,3576,3599,3648,3749,3842,3873,3993,3996,
4014,4044,4275,4368,4395,4413,4563,4632,4709,4742,
4950,4977,5031,5181,5246,5376,5430,5499,5523,5633,
5730,5798,5954,6051,6111,6155,6165,6207,6212,6387,
6449,6497,6575,6664
GAT count: 79
GAC: 124,157,198,387,516,633,1318,1635,2151,2301,2420,2514,
2660,2714,2790,2922,2946,3183,3189,3263,3345,3536,
3592,3651,3906,4029,4338,4712,4958,5001,5064,5310,
5358,5457,5484,5813,5853,5904,5931,6225,6241,6266,
6361,6544
GAC count: 44
TGT: 66,97,236,266,339,344,434,465,591,691,912,1000,1027,
1051,1069,1137,1151,1231,1243,1258,1306,1342,1508,
1512,1580,1612,1818,1836,1873,1925,1951,2023,2077,
2080,2104,2113,2122,2219,2256,2260,2304,2324,2353,
2468,2531,2694,2887,2931,2961,2998,3027,3057,3109,
3256,3295,3492,3529,3613,3659,3680,3691,3716,3734,
3737,3761,3803,3953,4037,4061,4066,4096,4124,4166,
4202,4230,4251,4456,4478,4490,4767,4884,4912,4955,
4998,5073,5105,5178,5186,5255,5305,5364,5395,5411,
5414,5444,5449,5507,5510,5551,5567,5579,5681,5719,
5774,5777,5781,5794,5848,5934,5990,6046,6083,6104,
6184,6257,6269,6305,6320,6436,6455,6474,6505,6549
TGT count: 123
TGC: (0)
CAA: 100,161,305,549,617,1103,1225,1296,1590,1698,1908,
2137,2198,2384,2618,2726,2821,3427,3472,3630,3764,
3988,4117,4195,4226,4278,4323,4437,4514,4686,4919,
5129,5209,5225,5241,5320,5686,5821,5872,6194,6309
CAA count: 41
CAG: 191,1047,1546,1928,3010,3024,3146,3215,3334,3484,3654,
4300,4623,4705,5489,5899
CAG count: 16
GAA: 641,650,822,855,961,1400,1535,1829,2181,2334,2604,
3225,3287,3352,3394,3516,3671,4400,4725,4905,5423,
6095,6323,6344,6375
GAA count: 25
GAG: 60,255,336,537,594,897,1191,1278,1322,2084,2543,2964,
3237,3275,3462,4025,5097,5258,5336,5655,5886,6180,
6235,6246
GAG count: 24
GGT: 94,143,251,300,459,734,763,1130,1134,1166,1313,1595,
1710,1916,1937,2061,2067,2211,2471,2474,2636,2775,
3085,3386,3722,3789,3915,3931,4034,4416,4425,4521,
4642,4676,4694,4785,4980,5111,5495,5614,5649,5693,
5742,5749,5752,5879,5963,6162,6279,6426,6441,6523,
6598,6640
GGT count: 54
GGC: (0)
GGA: 239,787,1407,3197,3551,6143,6251
GGA count: 7
GGG: 3390,3589,3839,3878,3884,4131,4171,4174,4589,5102,
5768,6396,6590,6678
GGG count: 14
CAT: 44,290,326,439,929,945,1081,1196,1283,1370,1375,1481,
1504,1694,1713,1793,1796,1804,1847,1963,1969,1972,
2116,2127,2359,2417,2639,2832,2835,2904,2926,3014,
3325,3607,3704,3757,3855,3935,3985,4083,4242,4372,
4445,4506,4666,4702,4735,4738,4994,5013,5034,5069,
5080,5299,5402,5472,5563,5596,5611,5622,5677,5858,
5950,6007,6140,6317,6341,6656
CAT count: 68
CAC: 172,214,283,355,669,1176,1379,1413,1650,1841,1886,
2003,2240,2285,2753,2868,2981,2992,3005,3316,3329,
3437,3579,4004,4218,4333,4750,4778,4943,5025,5398,
5441,6015,6063,6502
CAC count: 35
ATT: 53,524,541,887,1272,1426,1655,2055,2847,3001,3411,
3457,3870,4010,4538,4553,4578,5076,5346,5379,5437,
5554,5605,5882,5957,6136,6222,6433,6489,6538
ATT count: 30
ATC: 879,908,1676,1996,2883,2897,2958,3371,3525,3540,3851,
3860,3957,4110,4205,4284,4320,4699,4731,4812,4844,
4936,5269,5287,5390,5480,5639,5845,5983,6114
ATC count: 30
ATA: 76,1144,1429,1646,1658,1778,1947,2026,2581,3568,4434,
4854,4915,5037,6201
ATA count: 15
CTT: 330,333,420,519,563,753,861,916,1074,1203,1246,1353,
1394,1724,1748,1775,2189,2356,2374,2451,2502,2723,
2918,2995,3054,3068,3091,3243,3466,3479,3560,3617,
3688,3728,3890,4188,4363,4544,4581,4605,5055,5058,
5092,5160,5168,5279,5295,5355,5460,5537,5540,5669,
5758,5837,5960,6020,6086,6107,6152,6159,6171,6285,
6350,6393,6404,6571
CTT count: 66
CTC: 47,322,588,842,993,1691,2594,2627,3134,3305,3636,3783,
4191,4304,4341,4596,5361,5407,6080,6462,6606,6673
CTC count: 22
CTA: 14,279,607,610,637,851,970,997,1183,1557,1727,1738,
1869,1966,2264,2487,2600,2829,3302,3407,3627,3911,
4163,4308,4344,4377,5115,6354
CTA count: 28
CTG: 120,259,574,600,976,1059,1127,1345,1515,1639,1669,
1860,2245,2331,2428,2505,2682,3073,3349,3808,4086,
4380,4617,5217,5661,6069,6121,6204
CTG count: 28
TTA: 63,69,286,484,1110,1334,1445,1500,1752,2095,2101,2341,
2622,2812,2838,2871,2907,3495,4150,4626,4680,5046,
5302,5830,5908,5937,6003,6066,6382,6532,6553
TTA count: 31
TTG: 181,367,534,739,1020,1206,1249,1387,1438,1986,2586,
2971,3420,3698,3949,3961,4406,4650,4835,5108,5235,
5557,5746,6130,6229,6238,6289,6364,6629
TTG count: 29
AAA: 1008,1113,1218,2048,2463,2575,2877,3048,3249,4120,
4566,4896,4922,5700
AAA count: 14
AAG: 231,559,782,811,1221,1621,1983,2184,2201,2729,3063,
3158,4040,4054,4180,4347,4818,5418,6452
AAG count: 19
ATG: 33,88,630,684,717,982,2949,3573,5313,5328,6580
ATG count: 11
TTT: 21,117,248,804,1066,1325,1615,1760,1958,2058,2177,
2214,2381,2517,2561,2614,2697,2900,3088,3469,3476,
3610,3624,3818,4007,4541,4715,4861,4966,5368,5452,
5608,5739,5889,5947,6512
TTT count: 36
TTC: 445,504,756,1452,1679,1721,1763,2040,2645,2978,3174,
3665,4137,4359,4662,4827,6417
TTC count: 17
CCT: 294,819,1078,1821,2007,2148,3342,4058,4185,4461,4550,
5153,5619,6407,6619
CCT count: 15
CCC: 711,2226,3725,5340
CCC count: 4
CCA: 1459,4718,5175,5272,6334
CCA count: 5
CCG: (0)
TCT: 146,647,750,1269,2732,3234,3903,4419,4871,5010,5469,
5492,5527,5755,6168,6219,6486
TCT count: 17
TCC: 597,2318,2414,3240,3731,4075,4297,4753,6149
TCC count: 9
TCA: 1012,1815,2546,3677,4821
TCA count: 5
TCG: (0)
AGT: 363,452,480,870,1093,1275,1310,1435,1530,2289,2457,
2535,2578,3228,3246,3845,4198,4317,4770,5145,5228,
6347,6587
AGT count: 23
AGC: (0)
ACT: 390,1035,2064,3943,4392,5089,5928,6263,6423
ACT count: 9
ACC: 1866,2119,4386
ACC count: 3
ACA: 2439,3982,4759,5869
ACA count: 4
ACG: (0)
TGG: 495,2020,2801,3186,4069,5061,5707,6101,6187
TGG count: 9
TAT: 471,1397,1587,3152,3272,4350
TAT count: 6
TAC: 2312,2766,4265,4428,5977
TAC count: 5
GTT: 164,426,2880,3434,3557,4311,4635
GTT count: 7
GTC: 1577,4802,6390
GTC count: 3
GTA: 1147,4991
GTA count: 2
GTG: 205,964,4887,6028
GTG count: 4
TAA: 793,2170,3017,3710
TAA count: 4
TAG: 442,5599,5801
TAG count: 3
TGA: 566,845,2192,2267,3097,3833,5083,5642
TGA count: 8
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