Monday, January 3, 2022

Appendix 0-76

This is an appendix to: The Epigenetics of Viruses


Pattern '0':
("===================================")
Found in 1,236 SARS-CoV-2 viruses.


Pattern '0' positions:

1) Nucleotide Length: no change (=)
2) Gene Count: no change (=)

3) Gene 1 begins: no change (=)
4) Gene 1 ends: no change (=)
5) Gene 1 length: no change (=)

6) Gene 2 begins: no change (=)
7) Gene 2 ends: no change (=)
8) Gene 2 length: no change (=)

9) Gene 3 begins: no change (=)
10) Gene 3 ends: no change (=)
11) Gene 3 length: no change (=)

12) Gene 4 begins: no change (=)
13) Gene 4 ends: no change (=)
14) Gene 4 length: no change (=)

15) Gene 5 begins: no change (=)
16) Gene 5 ends: no change (=)
17) Gene 5 length: no change (=)

18) Gene 6 begins: no change (=)
19) Gene 6 ends: no change (=)
20) Gene 6 length: no change (=)

21) Gene 7 begins: no change (=)
22) Gene 7 ends: no change (=)
23) Gene 7 length: no change (=)

24) Gene 8 begins: no change (=)
25) Gene 8 ends: no change (=)
26) Gene 8 length: no change (=)

27) Gene 9 begins: no change (=)
28) Gene 9 ends: no change (=)
29) Gene 9 length: no change (=)

30) Gene 10 begins: no change (=)
31) Gene 10 ends: no change (=)
32) Gene 10 length: no change (=)

33) Gene 11 begins: no change (=)
34) Gene 11 ends: no change (=)
35) Gene 11 length: no change (=)



Pattern '1':
("<==================================")
Found in 603 SARS-CoV-2 viruses.


Pattern '1' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: no change (=)
4) Gene 1 ends: no change (=)
5) Gene 1 length: no change (=)

6) Gene 2 begins: no change (=)
7) Gene 2 ends: no change (=)
8) Gene 2 length: no change (=)

9) Gene 3 begins: no change (=)
10) Gene 3 ends: no change (=)
11) Gene 3 length: no change (=)

12) Gene 4 begins: no change (=)
13) Gene 4 ends: no change (=)
14) Gene 4 length: no change (=)

15) Gene 5 begins: no change (=)
16) Gene 5 ends: no change (=)
17) Gene 5 length: no change (=)

18) Gene 6 begins: no change (=)
19) Gene 6 ends: no change (=)
20) Gene 6 length: no change (=)

21) Gene 7 begins: no change (=)
22) Gene 7 ends: no change (=)
23) Gene 7 length: no change (=)

24) Gene 8 begins: no change (=)
25) Gene 8 ends: no change (=)
26) Gene 8 length: no change (=)

27) Gene 9 begins: no change (=)
28) Gene 9 ends: no change (=)
29) Gene 9 length: no change (=)

30) Gene 10 begins: no change (=)
31) Gene 10 ends: no change (=)
32) Gene 10 length: no change (=)

33) Gene 11 begins: no change (=)
34) Gene 11 ends: no change (=)
35) Gene 11 length: no change (=)



Pattern '2':
(">==>>>>=>>=>>=>>=>>=>>=>>=>>=>>=>>=")
Found in 79 SARS-CoV-2 viruses.


Pattern '2' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: no change (=)
4) Gene 1 ends: increased (>)
5) Gene 1 length: increased (>)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '3':
(">==================================")
Found in 570 SARS-CoV-2 viruses.


Pattern '3' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: no change (=)
4) Gene 1 ends: no change (=)
5) Gene 1 length: no change (=)

6) Gene 2 begins: no change (=)
7) Gene 2 ends: no change (=)
8) Gene 2 length: no change (=)

9) Gene 3 begins: no change (=)
10) Gene 3 ends: no change (=)
11) Gene 3 length: no change (=)

12) Gene 4 begins: no change (=)
13) Gene 4 ends: no change (=)
14) Gene 4 length: no change (=)

15) Gene 5 begins: no change (=)
16) Gene 5 ends: no change (=)
17) Gene 5 length: no change (=)

18) Gene 6 begins: no change (=)
19) Gene 6 ends: no change (=)
20) Gene 6 length: no change (=)

21) Gene 7 begins: no change (=)
22) Gene 7 ends: no change (=)
23) Gene 7 length: no change (=)

24) Gene 8 begins: no change (=)
25) Gene 8 ends: no change (=)
26) Gene 8 length: no change (=)

27) Gene 9 begins: no change (=)
28) Gene 9 ends: no change (=)
29) Gene 9 length: no change (=)

30) Gene 10 begins: no change (=)
31) Gene 10 ends: no change (=)
32) Gene 10 length: no change (=)

33) Gene 11 begins: no change (=)
34) Gene 11 ends: no change (=)
35) Gene 11 length: no change (=)



Pattern '4':
("<=<<=<<=<<=<<=<<=<<=<<=<<=<<=<<=<<=")
Found in 8,968 SARS-CoV-2 viruses.


Pattern '4' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: decreased (<)
4) Gene 1 ends: decreased (<)
5) Gene 1 length: no change (=)

6) Gene 2 begins: decreased (<)
7) Gene 2 ends: decreased (<)
8) Gene 2 length: no change (=)

9) Gene 3 begins: decreased (<)
10) Gene 3 ends: decreased (<)
11) Gene 3 length: no change (=)

12) Gene 4 begins: decreased (<)
13) Gene 4 ends: decreased (<)
14) Gene 4 length: no change (=)

15) Gene 5 begins: decreased (<)
16) Gene 5 ends: decreased (<)
17) Gene 5 length: no change (=)

18) Gene 6 begins: decreased (<)
19) Gene 6 ends: decreased (<)
20) Gene 6 length: no change (=)

21) Gene 7 begins: decreased (<)
22) Gene 7 ends: decreased (<)
23) Gene 7 length: no change (=)

24) Gene 8 begins: decreased (<)
25) Gene 8 ends: decreased (<)
26) Gene 8 length: no change (=)

27) Gene 9 begins: decreased (<)
28) Gene 9 ends: decreased (<)
29) Gene 9 length: no change (=)

30) Gene 10 begins: decreased (<)
31) Gene 10 ends: decreased (<)
32) Gene 10 length: no change (=)

33) Gene 11 begins: decreased (<)
34) Gene 11 ends: decreased (<)
35) Gene 11 length: no change (=)



Pattern '5':
(">=>>=>>=>>=>>=>>=>>=>>=>>=>>=>>=>>=")
Found in 17,146 SARS-CoV-2 viruses.


Pattern '5' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '6':
(">====================>>>>=>>=>>=>>=")
Found in 10 SARS-CoV-2 viruses.


Pattern '6' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: no change (=)
4) Gene 1 ends: no change (=)
5) Gene 1 length: no change (=)

6) Gene 2 begins: no change (=)
7) Gene 2 ends: no change (=)
8) Gene 2 length: no change (=)

9) Gene 3 begins: no change (=)
10) Gene 3 ends: no change (=)
11) Gene 3 length: no change (=)

12) Gene 4 begins: no change (=)
13) Gene 4 ends: no change (=)
14) Gene 4 length: no change (=)

15) Gene 5 begins: no change (=)
16) Gene 5 ends: no change (=)
17) Gene 5 length: no change (=)

18) Gene 6 begins: no change (=)
19) Gene 6 ends: no change (=)
20) Gene 6 length: no change (=)

21) Gene 7 begins: no change (=)
22) Gene 7 ends: increased (>)
23) Gene 7 length: increased (>)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '7':
(">========>>>>=>>=>>=>>=>>=>>=>>=>>=")
Found in 6 SARS-CoV-2 viruses.


Pattern '7' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: no change (=)
4) Gene 1 ends: no change (=)
5) Gene 1 length: no change (=)

6) Gene 2 begins: no change (=)
7) Gene 2 ends: no change (=)
8) Gene 2 length: no change (=)

9) Gene 3 begins: no change (=)
10) Gene 3 ends: increased (>)
11) Gene 3 length: increased (>)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '8':
(">=====>>>>=>>=>>=>>=>>=>>=>>=>>=>>=")
Found in 105 SARS-CoV-2 viruses.


Pattern '8' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: no change (=)
4) Gene 1 ends: no change (=)
5) Gene 1 length: no change (=)

6) Gene 2 begins: no change (=)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '9':
(">==>>>>>>>=>>=>>=>>=>>>>>=>>>>>=>>=")
Found in 7 SARS-CoV-2 viruses.


Pattern '9' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: no change (=)
4) Gene 1 ends: increased (>)
5) Gene 1 length: increased (>)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: increased (>)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: increased (>)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '10':
(">==>>>>>>>=>>=>>=>>=>>=>>=>>>>>=>>=")
Found in 669 SARS-CoV-2 viruses.


Pattern '10' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: no change (=)
4) Gene 1 ends: increased (>)
5) Gene 1 length: increased (>)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: increased (>)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '11':
(">==>>>>>>>=>>=>>=>>=>>=>>=>>>>>>>>=")
Found in 2 SARS-CoV-2 viruses.


Pattern '11' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: no change (=)
4) Gene 1 ends: increased (>)
5) Gene 1 length: increased (>)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: increased (>)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: increased (>)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '12':
(">============================>>=>>=")
Found in 90 SARS-CoV-2 viruses.


Pattern '12' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: no change (=)
4) Gene 1 ends: no change (=)
5) Gene 1 length: no change (=)

6) Gene 2 begins: no change (=)
7) Gene 2 ends: no change (=)
8) Gene 2 length: no change (=)

9) Gene 3 begins: no change (=)
10) Gene 3 ends: no change (=)
11) Gene 3 length: no change (=)

12) Gene 4 begins: no change (=)
13) Gene 4 ends: no change (=)
14) Gene 4 length: no change (=)

15) Gene 5 begins: no change (=)
16) Gene 5 ends: no change (=)
17) Gene 5 length: no change (=)

18) Gene 6 begins: no change (=)
19) Gene 6 ends: no change (=)
20) Gene 6 length: no change (=)

21) Gene 7 begins: no change (=)
22) Gene 7 ends: no change (=)
23) Gene 7 length: no change (=)

24) Gene 8 begins: no change (=)
25) Gene 8 ends: no change (=)
26) Gene 8 length: no change (=)

27) Gene 9 begins: no change (=)
28) Gene 9 ends: no change (=)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '13':
(">==>>>>>>>=>>=>>=>>=>>=>>=>>=>>=>>=")
Found in 64 SARS-CoV-2 viruses.


Pattern '13' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: no change (=)
4) Gene 1 ends: increased (>)
5) Gene 1 length: increased (>)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '14':
("==>>=>>=>>=>>=>>=>>=>>=>>=>>=>>=>>=")
Found in 406 SARS-CoV-2 viruses.


Pattern '14' positions:

1) Nucleotide Length: no change (=)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '15':
("<=>>=>>=>>=>>=>>=>>=>>=>>=>>=>>=>>=")
Found in 719 SARS-CoV-2 viruses.


Pattern '15' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '16':
("<=<<><<><<=<<=<<=<<=<<=<<=<<=<<=<<=")
Found in 88 SARS-CoV-2 viruses.


Pattern '16' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: decreased (<)
4) Gene 1 ends: decreased (<)
5) Gene 1 length: increased (>)

6) Gene 2 begins: decreased (<)
7) Gene 2 ends: decreased (<)
8) Gene 2 length: increased (>)

9) Gene 3 begins: decreased (<)
10) Gene 3 ends: decreased (<)
11) Gene 3 length: no change (=)

12) Gene 4 begins: decreased (<)
13) Gene 4 ends: decreased (<)
14) Gene 4 length: no change (=)

15) Gene 5 begins: decreased (<)
16) Gene 5 ends: decreased (<)
17) Gene 5 length: no change (=)

18) Gene 6 begins: decreased (<)
19) Gene 6 ends: decreased (<)
20) Gene 6 length: no change (=)

21) Gene 7 begins: decreased (<)
22) Gene 7 ends: decreased (<)
23) Gene 7 length: no change (=)

24) Gene 8 begins: decreased (<)
25) Gene 8 ends: decreased (<)
26) Gene 8 length: no change (=)

27) Gene 9 begins: decreased (<)
28) Gene 9 ends: decreased (<)
29) Gene 9 length: no change (=)

30) Gene 10 begins: decreased (<)
31) Gene 10 ends: decreased (<)
32) Gene 10 length: no change (=)

33) Gene 11 begins: decreased (<)
34) Gene 11 ends: decreased (<)
35) Gene 11 length: no change (=)



Pattern '17':
(">=>>=>>=>>=>>=>>=>>=>>=>>=>>=>>>>>=")
Found in 94 SARS-CoV-2 viruses.


Pattern '17' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: increased (>)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '18':
("==<<=<<=<<=<<=<<=<<=<<=<<=<<=<<=<<=")
Found in 103 SARS-CoV-2 viruses.


Pattern '18' positions:

1) Nucleotide Length: no change (=)
2) Gene Count: no change (=)

3) Gene 1 begins: decreased (<)
4) Gene 1 ends: decreased (<)
5) Gene 1 length: no change (=)

6) Gene 2 begins: decreased (<)
7) Gene 2 ends: decreased (<)
8) Gene 2 length: no change (=)

9) Gene 3 begins: decreased (<)
10) Gene 3 ends: decreased (<)
11) Gene 3 length: no change (=)

12) Gene 4 begins: decreased (<)
13) Gene 4 ends: decreased (<)
14) Gene 4 length: no change (=)

15) Gene 5 begins: decreased (<)
16) Gene 5 ends: decreased (<)
17) Gene 5 length: no change (=)

18) Gene 6 begins: decreased (<)
19) Gene 6 ends: decreased (<)
20) Gene 6 length: no change (=)

21) Gene 7 begins: decreased (<)
22) Gene 7 ends: decreased (<)
23) Gene 7 length: no change (=)

24) Gene 8 begins: decreased (<)
25) Gene 8 ends: decreased (<)
26) Gene 8 length: no change (=)

27) Gene 9 begins: decreased (<)
28) Gene 9 ends: decreased (<)
29) Gene 9 length: no change (=)

30) Gene 10 begins: decreased (<)
31) Gene 10 ends: decreased (<)
32) Gene 10 length: no change (=)

33) Gene 11 begins: decreased (<)
34) Gene 11 ends: decreased (<)
35) Gene 11 length: no change (=)



Pattern '19':
("<=>>=>>=><<<<=<<=<<=<<=<<=<<=<<=<<=")
Found in 25 SARS-CoV-2 viruses.


Pattern '19' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: decreased (<)
11) Gene 3 length: decreased (<)

12) Gene 4 begins: decreased (<)
13) Gene 4 ends: decreased (<)
14) Gene 4 length: no change (=)

15) Gene 5 begins: decreased (<)
16) Gene 5 ends: decreased (<)
17) Gene 5 length: no change (=)

18) Gene 6 begins: decreased (<)
19) Gene 6 ends: decreased (<)
20) Gene 6 length: no change (=)

21) Gene 7 begins: decreased (<)
22) Gene 7 ends: decreased (<)
23) Gene 7 length: no change (=)

24) Gene 8 begins: decreased (<)
25) Gene 8 ends: decreased (<)
26) Gene 8 length: no change (=)

27) Gene 9 begins: decreased (<)
28) Gene 9 ends: decreased (<)
29) Gene 9 length: no change (=)

30) Gene 10 begins: decreased (<)
31) Gene 10 ends: decreased (<)
32) Gene 10 length: no change (=)

33) Gene 11 begins: decreased (<)
34) Gene 11 ends: decreased (<)
35) Gene 11 length: no change (=)



Pattern '20':
(">=>>>>>=>>=>>=>>=>>=>>=>>=>>=>>=>>=")
Found in 2,147 SARS-CoV-2 viruses.


Pattern '20' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: increased (>)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '21':
(">=>>=>>=>>=>>=>>=>>=>>=>>=>><>>=>>=")
Found in 31 SARS-CoV-2 viruses.


Pattern '21' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: decreased (<)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '22':
(">=<<=<<=<<=<<=<<=<<=<<=<<=<<=<<=<<=")
Found in 1,501 SARS-CoV-2 viruses.


Pattern '22' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: decreased (<)
4) Gene 1 ends: decreased (<)
5) Gene 1 length: no change (=)

6) Gene 2 begins: decreased (<)
7) Gene 2 ends: decreased (<)
8) Gene 2 length: no change (=)

9) Gene 3 begins: decreased (<)
10) Gene 3 ends: decreased (<)
11) Gene 3 length: no change (=)

12) Gene 4 begins: decreased (<)
13) Gene 4 ends: decreased (<)
14) Gene 4 length: no change (=)

15) Gene 5 begins: decreased (<)
16) Gene 5 ends: decreased (<)
17) Gene 5 length: no change (=)

18) Gene 6 begins: decreased (<)
19) Gene 6 ends: decreased (<)
20) Gene 6 length: no change (=)

21) Gene 7 begins: decreased (<)
22) Gene 7 ends: decreased (<)
23) Gene 7 length: no change (=)

24) Gene 8 begins: decreased (<)
25) Gene 8 ends: decreased (<)
26) Gene 8 length: no change (=)

27) Gene 9 begins: decreased (<)
28) Gene 9 ends: decreased (<)
29) Gene 9 length: no change (=)

30) Gene 10 begins: decreased (<)
31) Gene 10 ends: decreased (<)
32) Gene 10 length: no change (=)

33) Gene 11 begins: decreased (<)
34) Gene 11 ends: decreased (<)
35) Gene 11 length: no change (=)



Pattern '23':
("<=<<><<=<<=<<=<<=<<=<<=<<=<<=<<=<<=")
Found in 518 SARS-CoV-2 viruses.


Pattern '23' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: decreased (<)
4) Gene 1 ends: decreased (<)
5) Gene 1 length: increased (>)

6) Gene 2 begins: decreased (<)
7) Gene 2 ends: decreased (<)
8) Gene 2 length: no change (=)

9) Gene 3 begins: decreased (<)
10) Gene 3 ends: decreased (<)
11) Gene 3 length: no change (=)

12) Gene 4 begins: decreased (<)
13) Gene 4 ends: decreased (<)
14) Gene 4 length: no change (=)

15) Gene 5 begins: decreased (<)
16) Gene 5 ends: decreased (<)
17) Gene 5 length: no change (=)

18) Gene 6 begins: decreased (<)
19) Gene 6 ends: decreased (<)
20) Gene 6 length: no change (=)

21) Gene 7 begins: decreased (<)
22) Gene 7 ends: decreased (<)
23) Gene 7 length: no change (=)

24) Gene 8 begins: decreased (<)
25) Gene 8 ends: decreased (<)
26) Gene 8 length: no change (=)

27) Gene 9 begins: decreased (<)
28) Gene 9 ends: decreased (<)
29) Gene 9 length: no change (=)

30) Gene 10 begins: decreased (<)
31) Gene 10 ends: decreased (<)
32) Gene 10 length: no change (=)

33) Gene 11 begins: decreased (<)
34) Gene 11 ends: decreased (<)
35) Gene 11 length: no change (=)



Pattern '24':
("<=<<<<<=<<=<<=<<=<<=<<=<<=<<=<<=<<=")
Found in 8 SARS-CoV-2 viruses.


Pattern '24' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: decreased (<)
4) Gene 1 ends: decreased (<)
5) Gene 1 length: decreased (<)

6) Gene 2 begins: decreased (<)
7) Gene 2 ends: decreased (<)
8) Gene 2 length: no change (=)

9) Gene 3 begins: decreased (<)
10) Gene 3 ends: decreased (<)
11) Gene 3 length: no change (=)

12) Gene 4 begins: decreased (<)
13) Gene 4 ends: decreased (<)
14) Gene 4 length: no change (=)

15) Gene 5 begins: decreased (<)
16) Gene 5 ends: decreased (<)
17) Gene 5 length: no change (=)

18) Gene 6 begins: decreased (<)
19) Gene 6 ends: decreased (<)
20) Gene 6 length: no change (=)

21) Gene 7 begins: decreased (<)
22) Gene 7 ends: decreased (<)
23) Gene 7 length: no change (=)

24) Gene 8 begins: decreased (<)
25) Gene 8 ends: decreased (<)
26) Gene 8 length: no change (=)

27) Gene 9 begins: decreased (<)
28) Gene 9 ends: decreased (<)
29) Gene 9 length: no change (=)

30) Gene 10 begins: decreased (<)
31) Gene 10 ends: decreased (<)
32) Gene 10 length: no change (=)

33) Gene 11 begins: decreased (<)
34) Gene 11 ends: decreased (<)
35) Gene 11 length: no change (=)



Pattern '25':
(">=>>=>>>>>=>>=>>=>>=>>=>>=>>=>>=>>=")
Found in 330 SARS-CoV-2 viruses.


Pattern '25' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '26':
(">=>>=>>=>>=>>=>>=>>=>>>>>=>>=>>=>>=")
Found in 23 SARS-CoV-2 viruses.


Pattern '26' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: increased (>)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '27':
(">=>>=>>=>>=>>=>>=>>=>>=>>>>>=>>=>>=")
Found in 9 SARS-CoV-2 viruses.


Pattern '27' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: increased (>)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '28':
("<=>>=><<<<=<<=<<=<<=<<=<<=<<=<<=<<=")
Found in 36 SARS-CoV-2 viruses.


Pattern '28' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: decreased (<)
8) Gene 2 length: decreased (<)

9) Gene 3 begins: decreased (<)
10) Gene 3 ends: decreased (<)
11) Gene 3 length: no change (=)

12) Gene 4 begins: decreased (<)
13) Gene 4 ends: decreased (<)
14) Gene 4 length: no change (=)

15) Gene 5 begins: decreased (<)
16) Gene 5 ends: decreased (<)
17) Gene 5 length: no change (=)

18) Gene 6 begins: decreased (<)
19) Gene 6 ends: decreased (<)
20) Gene 6 length: no change (=)

21) Gene 7 begins: decreased (<)
22) Gene 7 ends: decreased (<)
23) Gene 7 length: no change (=)

24) Gene 8 begins: decreased (<)
25) Gene 8 ends: decreased (<)
26) Gene 8 length: no change (=)

27) Gene 9 begins: decreased (<)
28) Gene 9 ends: decreased (<)
29) Gene 9 length: no change (=)

30) Gene 10 begins: decreased (<)
31) Gene 10 ends: decreased (<)
32) Gene 10 length: no change (=)

33) Gene 11 begins: decreased (<)
34) Gene 11 ends: decreased (<)
35) Gene 11 length: no change (=)



Pattern '29':
("<=<<=<<><<=<<=<<=<<=<<=<<=<<=<<=<<=")
Found in 299 SARS-CoV-2 viruses.


Pattern '29' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: decreased (<)
4) Gene 1 ends: decreased (<)
5) Gene 1 length: no change (=)

6) Gene 2 begins: decreased (<)
7) Gene 2 ends: decreased (<)
8) Gene 2 length: increased (>)

9) Gene 3 begins: decreased (<)
10) Gene 3 ends: decreased (<)
11) Gene 3 length: no change (=)

12) Gene 4 begins: decreased (<)
13) Gene 4 ends: decreased (<)
14) Gene 4 length: no change (=)

15) Gene 5 begins: decreased (<)
16) Gene 5 ends: decreased (<)
17) Gene 5 length: no change (=)

18) Gene 6 begins: decreased (<)
19) Gene 6 ends: decreased (<)
20) Gene 6 length: no change (=)

21) Gene 7 begins: decreased (<)
22) Gene 7 ends: decreased (<)
23) Gene 7 length: no change (=)

24) Gene 8 begins: decreased (<)
25) Gene 8 ends: decreased (<)
26) Gene 8 length: no change (=)

27) Gene 9 begins: decreased (<)
28) Gene 9 ends: decreased (<)
29) Gene 9 length: no change (=)

30) Gene 10 begins: decreased (<)
31) Gene 10 ends: decreased (<)
32) Gene 10 length: no change (=)

33) Gene 11 begins: decreased (<)
34) Gene 11 ends: decreased (<)
35) Gene 11 length: no change (=)



Pattern '30':
("<=<<=<<=<<><<=<<=<<=<<=<<=<<=<<=<<=")
Found in 26 SARS-CoV-2 viruses.


Pattern '30' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: decreased (<)
4) Gene 1 ends: decreased (<)
5) Gene 1 length: no change (=)

6) Gene 2 begins: decreased (<)
7) Gene 2 ends: decreased (<)
8) Gene 2 length: no change (=)

9) Gene 3 begins: decreased (<)
10) Gene 3 ends: decreased (<)
11) Gene 3 length: increased (>)

12) Gene 4 begins: decreased (<)
13) Gene 4 ends: decreased (<)
14) Gene 4 length: no change (=)

15) Gene 5 begins: decreased (<)
16) Gene 5 ends: decreased (<)
17) Gene 5 length: no change (=)

18) Gene 6 begins: decreased (<)
19) Gene 6 ends: decreased (<)
20) Gene 6 length: no change (=)

21) Gene 7 begins: decreased (<)
22) Gene 7 ends: decreased (<)
23) Gene 7 length: no change (=)

24) Gene 8 begins: decreased (<)
25) Gene 8 ends: decreased (<)
26) Gene 8 length: no change (=)

27) Gene 9 begins: decreased (<)
28) Gene 9 ends: decreased (<)
29) Gene 9 length: no change (=)

30) Gene 10 begins: decreased (<)
31) Gene 10 ends: decreased (<)
32) Gene 10 length: no change (=)

33) Gene 11 begins: decreased (<)
34) Gene 11 ends: decreased (<)
35) Gene 11 length: no change (=)



Pattern '31':
("<=<<=<<=<<=<<=<<=<<=<<=<<=<<=<<><<=")
Found in 22 SARS-CoV-2 viruses.


Pattern '31' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: decreased (<)
4) Gene 1 ends: decreased (<)
5) Gene 1 length: no change (=)

6) Gene 2 begins: decreased (<)
7) Gene 2 ends: decreased (<)
8) Gene 2 length: no change (=)

9) Gene 3 begins: decreased (<)
10) Gene 3 ends: decreased (<)
11) Gene 3 length: no change (=)

12) Gene 4 begins: decreased (<)
13) Gene 4 ends: decreased (<)
14) Gene 4 length: no change (=)

15) Gene 5 begins: decreased (<)
16) Gene 5 ends: decreased (<)
17) Gene 5 length: no change (=)

18) Gene 6 begins: decreased (<)
19) Gene 6 ends: decreased (<)
20) Gene 6 length: no change (=)

21) Gene 7 begins: decreased (<)
22) Gene 7 ends: decreased (<)
23) Gene 7 length: no change (=)

24) Gene 8 begins: decreased (<)
25) Gene 8 ends: decreased (<)
26) Gene 8 length: no change (=)

27) Gene 9 begins: decreased (<)
28) Gene 9 ends: decreased (<)
29) Gene 9 length: no change (=)

30) Gene 10 begins: decreased (<)
31) Gene 10 ends: decreased (<)
32) Gene 10 length: increased (>)

33) Gene 11 begins: decreased (<)
34) Gene 11 ends: decreased (<)
35) Gene 11 length: no change (=)



Pattern '32':
(">=>>=>>=>>=>>=>>=>>=>>=>>=>>>>>=>>=")
Found in 83 SARS-CoV-2 viruses.


Pattern '32' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: increased (>)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '33':
(">=============================>>>>=")
Found in 4 SARS-CoV-2 viruses.


Pattern '33' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: no change (=)
4) Gene 1 ends: no change (=)
5) Gene 1 length: no change (=)

6) Gene 2 begins: no change (=)
7) Gene 2 ends: no change (=)
8) Gene 2 length: no change (=)

9) Gene 3 begins: no change (=)
10) Gene 3 ends: no change (=)
11) Gene 3 length: no change (=)

12) Gene 4 begins: no change (=)
13) Gene 4 ends: no change (=)
14) Gene 4 length: no change (=)

15) Gene 5 begins: no change (=)
16) Gene 5 ends: no change (=)
17) Gene 5 length: no change (=)

18) Gene 6 begins: no change (=)
19) Gene 6 ends: no change (=)
20) Gene 6 length: no change (=)

21) Gene 7 begins: no change (=)
22) Gene 7 ends: no change (=)
23) Gene 7 length: no change (=)

24) Gene 8 begins: no change (=)
25) Gene 8 ends: no change (=)
26) Gene 8 length: no change (=)

27) Gene 9 begins: no change (=)
28) Gene 9 ends: no change (=)
29) Gene 9 length: no change (=)

30) Gene 10 begins: no change (=)
31) Gene 10 ends: increased (>)
32) Gene 10 length: increased (>)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '34':
("==>>=>>=><<<<=<<=<<=<<=<<=<<=<<=<<=")
Found in 10 SARS-CoV-2 viruses.


Pattern '34' positions:

1) Nucleotide Length: no change (=)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: decreased (<)
11) Gene 3 length: decreased (<)

12) Gene 4 begins: decreased (<)
13) Gene 4 ends: decreased (<)
14) Gene 4 length: no change (=)

15) Gene 5 begins: decreased (<)
16) Gene 5 ends: decreased (<)
17) Gene 5 length: no change (=)

18) Gene 6 begins: decreased (<)
19) Gene 6 ends: decreased (<)
20) Gene 6 length: no change (=)

21) Gene 7 begins: decreased (<)
22) Gene 7 ends: decreased (<)
23) Gene 7 length: no change (=)

24) Gene 8 begins: decreased (<)
25) Gene 8 ends: decreased (<)
26) Gene 8 length: no change (=)

27) Gene 9 begins: decreased (<)
28) Gene 9 ends: decreased (<)
29) Gene 9 length: no change (=)

30) Gene 10 begins: decreased (<)
31) Gene 10 ends: decreased (<)
32) Gene 10 length: no change (=)

33) Gene 11 begins: decreased (<)
34) Gene 11 ends: decreased (<)
35) Gene 11 length: no change (=)



Pattern '35':
(">=>>=>>=>>=>>=>>=>>=>>=>>>>>>>>=>>=")
Found in 1 SARS-CoV-2 virus.


Pattern '35' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: increased (>)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: increased (>)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '36':
(">=>>=>>=>>>>>=>>=>>=>>=>>=>>=>>=>>=")
Found in 42 SARS-CoV-2 viruses.


Pattern '36' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: increased (>)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '37':
("<=>>=>>=>>=>>=>>=>>=>>=>>=>>=>>>>>=")
Found in 3 SARS-CoV-2 viruses.


Pattern '37' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: increased (>)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '38':
(">=>>=>>=>>=>>=>>=>>>>>=>>=>>=>>=>>=")
Found in 7 SARS-CoV-2 viruses.


Pattern '38' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: increased (>)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '39':
(">=>>><>>>>=>>=>>=>>=>>=>>=>>=>>=>>=")
Found in 2 SARS-CoV-2 viruses.


Pattern '39' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: increased (>)

6) Gene 2 begins: decreased (<)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '40':
(">=<<=<<=<<=<<=<<=<<=<<=<<=<<=<<><<=")
Found in 1 SARS-CoV-2 virus.


Pattern '40' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: decreased (<)
4) Gene 1 ends: decreased (<)
5) Gene 1 length: no change (=)

6) Gene 2 begins: decreased (<)
7) Gene 2 ends: decreased (<)
8) Gene 2 length: no change (=)

9) Gene 3 begins: decreased (<)
10) Gene 3 ends: decreased (<)
11) Gene 3 length: no change (=)

12) Gene 4 begins: decreased (<)
13) Gene 4 ends: decreased (<)
14) Gene 4 length: no change (=)

15) Gene 5 begins: decreased (<)
16) Gene 5 ends: decreased (<)
17) Gene 5 length: no change (=)

18) Gene 6 begins: decreased (<)
19) Gene 6 ends: decreased (<)
20) Gene 6 length: no change (=)

21) Gene 7 begins: decreased (<)
22) Gene 7 ends: decreased (<)
23) Gene 7 length: no change (=)

24) Gene 8 begins: decreased (<)
25) Gene 8 ends: decreased (<)
26) Gene 8 length: no change (=)

27) Gene 9 begins: decreased (<)
28) Gene 9 ends: decreased (<)
29) Gene 9 length: no change (=)

30) Gene 10 begins: decreased (<)
31) Gene 10 ends: decreased (<)
32) Gene 10 length: increased (>)

33) Gene 11 begins: decreased (<)
34) Gene 11 ends: decreased (<)
35) Gene 11 length: no change (=)



Pattern '41':
(">=<<=<<=<<=<<=<<=<<=<<=<<=<<=<>>>>=")
Found in 3 SARS-CoV-2 viruses.


Pattern '41' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: decreased (<)
4) Gene 1 ends: decreased (<)
5) Gene 1 length: no change (=)

6) Gene 2 begins: decreased (<)
7) Gene 2 ends: decreased (<)
8) Gene 2 length: no change (=)

9) Gene 3 begins: decreased (<)
10) Gene 3 ends: decreased (<)
11) Gene 3 length: no change (=)

12) Gene 4 begins: decreased (<)
13) Gene 4 ends: decreased (<)
14) Gene 4 length: no change (=)

15) Gene 5 begins: decreased (<)
16) Gene 5 ends: decreased (<)
17) Gene 5 length: no change (=)

18) Gene 6 begins: decreased (<)
19) Gene 6 ends: decreased (<)
20) Gene 6 length: no change (=)

21) Gene 7 begins: decreased (<)
22) Gene 7 ends: decreased (<)
23) Gene 7 length: no change (=)

24) Gene 8 begins: decreased (<)
25) Gene 8 ends: decreased (<)
26) Gene 8 length: no change (=)

27) Gene 9 begins: decreased (<)
28) Gene 9 ends: decreased (<)
29) Gene 9 length: no change (=)

30) Gene 10 begins: decreased (<)
31) Gene 10 ends: increased (>)
32) Gene 10 length: increased (>)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '42':
(">=<<=<<=<>>>>=>>=>>=>>=>>=>>=>>=>>=")
Found in 5 SARS-CoV-2 viruses.


Pattern '42' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: decreased (<)
4) Gene 1 ends: decreased (<)
5) Gene 1 length: no change (=)

6) Gene 2 begins: decreased (<)
7) Gene 2 ends: decreased (<)
8) Gene 2 length: no change (=)

9) Gene 3 begins: decreased (<)
10) Gene 3 ends: increased (>)
11) Gene 3 length: increased (>)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '43':
(">=<>>>>=>>=>>=>>=>>=>>=>>=>>=>>=>>=")
Found in 107 SARS-CoV-2 viruses.


Pattern '43' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: decreased (<)
4) Gene 1 ends: increased (>)
5) Gene 1 length: increased (>)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '44':
(">=>>=>>=>><>>=>>=>>=>>=>>=>>=>>=>>=")
Found in 25 SARS-CoV-2 viruses.


Pattern '44' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: decreased (<)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '45':
("<=<<=<<=<<=<<=<<=<<=<<><<=<<=<<=<<=")
Found in 7 SARS-CoV-2 viruses.


Pattern '45' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: decreased (<)
4) Gene 1 ends: decreased (<)
5) Gene 1 length: no change (=)

6) Gene 2 begins: decreased (<)
7) Gene 2 ends: decreased (<)
8) Gene 2 length: no change (=)

9) Gene 3 begins: decreased (<)
10) Gene 3 ends: decreased (<)
11) Gene 3 length: no change (=)

12) Gene 4 begins: decreased (<)
13) Gene 4 ends: decreased (<)
14) Gene 4 length: no change (=)

15) Gene 5 begins: decreased (<)
16) Gene 5 ends: decreased (<)
17) Gene 5 length: no change (=)

18) Gene 6 begins: decreased (<)
19) Gene 6 ends: decreased (<)
20) Gene 6 length: no change (=)

21) Gene 7 begins: decreased (<)
22) Gene 7 ends: decreased (<)
23) Gene 7 length: increased (>)

24) Gene 8 begins: decreased (<)
25) Gene 8 ends: decreased (<)
26) Gene 8 length: no change (=)

27) Gene 9 begins: decreased (<)
28) Gene 9 ends: decreased (<)
29) Gene 9 length: no change (=)

30) Gene 10 begins: decreased (<)
31) Gene 10 ends: decreased (<)
32) Gene 10 length: no change (=)

33) Gene 11 begins: decreased (<)
34) Gene 11 ends: decreased (<)
35) Gene 11 length: no change (=)



Pattern '46':
("<=<<=<<=<<<<<=<<=<<=<<=<<=<<=<<=<<=")
Found in 18 SARS-CoV-2 viruses.


Pattern '46' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: decreased (<)
4) Gene 1 ends: decreased (<)
5) Gene 1 length: no change (=)

6) Gene 2 begins: decreased (<)
7) Gene 2 ends: decreased (<)
8) Gene 2 length: no change (=)

9) Gene 3 begins: decreased (<)
10) Gene 3 ends: decreased (<)
11) Gene 3 length: decreased (<)

12) Gene 4 begins: decreased (<)
13) Gene 4 ends: decreased (<)
14) Gene 4 length: no change (=)

15) Gene 5 begins: decreased (<)
16) Gene 5 ends: decreased (<)
17) Gene 5 length: no change (=)

18) Gene 6 begins: decreased (<)
19) Gene 6 ends: decreased (<)
20) Gene 6 length: no change (=)

21) Gene 7 begins: decreased (<)
22) Gene 7 ends: decreased (<)
23) Gene 7 length: no change (=)

24) Gene 8 begins: decreased (<)
25) Gene 8 ends: decreased (<)
26) Gene 8 length: no change (=)

27) Gene 9 begins: decreased (<)
28) Gene 9 ends: decreased (<)
29) Gene 9 length: no change (=)

30) Gene 10 begins: decreased (<)
31) Gene 10 ends: decreased (<)
32) Gene 10 length: no change (=)

33) Gene 11 begins: decreased (<)
34) Gene 11 ends: decreased (<)
35) Gene 11 length: no change (=)



Pattern '47':
("==>>=>>=>>>>>=>>=>>=>>=>>=>>=>>=>>=")
Found in 1 SARS-CoV-2 virus.


Pattern '47' positions:

1) Nucleotide Length: no change (=)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: increased (>)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '48':
(">=>>=>>=><<<<=<<=<<=<<=<<=<<=<<=<<=")
Found in 8 SARS-CoV-2 viruses.


Pattern '48' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: decreased (<)
11) Gene 3 length: decreased (<)

12) Gene 4 begins: decreased (<)
13) Gene 4 ends: decreased (<)
14) Gene 4 length: no change (=)

15) Gene 5 begins: decreased (<)
16) Gene 5 ends: decreased (<)
17) Gene 5 length: no change (=)

18) Gene 6 begins: decreased (<)
19) Gene 6 ends: decreased (<)
20) Gene 6 length: no change (=)

21) Gene 7 begins: decreased (<)
22) Gene 7 ends: decreased (<)
23) Gene 7 length: no change (=)

24) Gene 8 begins: decreased (<)
25) Gene 8 ends: decreased (<)
26) Gene 8 length: no change (=)

27) Gene 9 begins: decreased (<)
28) Gene 9 ends: decreased (<)
29) Gene 9 length: no change (=)

30) Gene 10 begins: decreased (<)
31) Gene 10 ends: decreased (<)
32) Gene 10 length: no change (=)

33) Gene 11 begins: decreased (<)
34) Gene 11 ends: decreased (<)
35) Gene 11 length: no change (=)



Pattern '49':
("==><<<<=<<=<<=<<=<<=<<=<<=<<=<<=<<=")
Found in 1 SARS-CoV-2 virus.


Pattern '49' positions:

1) Nucleotide Length: no change (=)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: decreased (<)
5) Gene 1 length: decreased (<)

6) Gene 2 begins: decreased (<)
7) Gene 2 ends: decreased (<)
8) Gene 2 length: no change (=)

9) Gene 3 begins: decreased (<)
10) Gene 3 ends: decreased (<)
11) Gene 3 length: no change (=)

12) Gene 4 begins: decreased (<)
13) Gene 4 ends: decreased (<)
14) Gene 4 length: no change (=)

15) Gene 5 begins: decreased (<)
16) Gene 5 ends: decreased (<)
17) Gene 5 length: no change (=)

18) Gene 6 begins: decreased (<)
19) Gene 6 ends: decreased (<)
20) Gene 6 length: no change (=)

21) Gene 7 begins: decreased (<)
22) Gene 7 ends: decreased (<)
23) Gene 7 length: no change (=)

24) Gene 8 begins: decreased (<)
25) Gene 8 ends: decreased (<)
26) Gene 8 length: no change (=)

27) Gene 9 begins: decreased (<)
28) Gene 9 ends: decreased (<)
29) Gene 9 length: no change (=)

30) Gene 10 begins: decreased (<)
31) Gene 10 ends: decreased (<)
32) Gene 10 length: no change (=)

33) Gene 11 begins: decreased (<)
34) Gene 11 ends: decreased (<)
35) Gene 11 length: no change (=)



Pattern '50':
(">=>>=>>=>=<========================")
Found in 1 SARS-CoV-2 virus.


Pattern '50' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: no change (=)
11) Gene 3 length: decreased (<)

12) Gene 4 begins: no change (=)
13) Gene 4 ends: no change (=)
14) Gene 4 length: no change (=)

15) Gene 5 begins: no change (=)
16) Gene 5 ends: no change (=)
17) Gene 5 length: no change (=)

18) Gene 6 begins: no change (=)
19) Gene 6 ends: no change (=)
20) Gene 6 length: no change (=)

21) Gene 7 begins: no change (=)
22) Gene 7 ends: no change (=)
23) Gene 7 length: no change (=)

24) Gene 8 begins: no change (=)
25) Gene 8 ends: no change (=)
26) Gene 8 length: no change (=)

27) Gene 9 begins: no change (=)
28) Gene 9 ends: no change (=)
29) Gene 9 length: no change (=)

30) Gene 10 begins: no change (=)
31) Gene 10 ends: no change (=)
32) Gene 10 length: no change (=)

33) Gene 11 begins: no change (=)
34) Gene 11 ends: no change (=)
35) Gene 11 length: no change (=)



Pattern '51':
("==>>=>>=>>=>>=>>=>>=>>=>>=>>=><<<<=")
Found in 1 SARS-CoV-2 virus.


Pattern '51' positions:

1) Nucleotide Length: no change (=)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: decreased (<)
32) Gene 10 length: decreased (<)

33) Gene 11 begins: decreased (<)
34) Gene 11 ends: decreased (<)
35) Gene 11 length: no change (=)



Pattern '52':
("<=<<=<<=<<=<<=<<=<<=<<=<<=<<><<=<<=")
Found in 12 SARS-CoV-2 viruses.


Pattern '52' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: decreased (<)
4) Gene 1 ends: decreased (<)
5) Gene 1 length: no change (=)

6) Gene 2 begins: decreased (<)
7) Gene 2 ends: decreased (<)
8) Gene 2 length: no change (=)

9) Gene 3 begins: decreased (<)
10) Gene 3 ends: decreased (<)
11) Gene 3 length: no change (=)

12) Gene 4 begins: decreased (<)
13) Gene 4 ends: decreased (<)
14) Gene 4 length: no change (=)

15) Gene 5 begins: decreased (<)
16) Gene 5 ends: decreased (<)
17) Gene 5 length: no change (=)

18) Gene 6 begins: decreased (<)
19) Gene 6 ends: decreased (<)
20) Gene 6 length: no change (=)

21) Gene 7 begins: decreased (<)
22) Gene 7 ends: decreased (<)
23) Gene 7 length: no change (=)

24) Gene 8 begins: decreased (<)
25) Gene 8 ends: decreased (<)
26) Gene 8 length: no change (=)

27) Gene 9 begins: decreased (<)
28) Gene 9 ends: decreased (<)
29) Gene 9 length: increased (>)

30) Gene 10 begins: decreased (<)
31) Gene 10 ends: decreased (<)
32) Gene 10 length: no change (=)

33) Gene 11 begins: decreased (<)
34) Gene 11 ends: decreased (<)
35) Gene 11 length: no change (=)



Pattern '53':
(">=>>=>>=>>=>>>>>=>>=>>=>>=>>=>>=>>=")
Found in 2 SARS-CoV-2 viruses.


Pattern '53' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: increased (>)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '54':
(">=>>=>>=>>=>>=>>=>>=>>=>>=>>=>><>>=")
Found in 1 SARS-CoV-2 virus.


Pattern '54' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: decreased (<)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '55':
("<=<<=<<=<<=<<=<<=<<=<<=<<><<=<<=<<=")
Found in 4 SARS-CoV-2 viruses.


Pattern '55' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: decreased (<)
4) Gene 1 ends: decreased (<)
5) Gene 1 length: no change (=)

6) Gene 2 begins: decreased (<)
7) Gene 2 ends: decreased (<)
8) Gene 2 length: no change (=)

9) Gene 3 begins: decreased (<)
10) Gene 3 ends: decreased (<)
11) Gene 3 length: no change (=)

12) Gene 4 begins: decreased (<)
13) Gene 4 ends: decreased (<)
14) Gene 4 length: no change (=)

15) Gene 5 begins: decreased (<)
16) Gene 5 ends: decreased (<)
17) Gene 5 length: no change (=)

18) Gene 6 begins: decreased (<)
19) Gene 6 ends: decreased (<)
20) Gene 6 length: no change (=)

21) Gene 7 begins: decreased (<)
22) Gene 7 ends: decreased (<)
23) Gene 7 length: no change (=)

24) Gene 8 begins: decreased (<)
25) Gene 8 ends: decreased (<)
26) Gene 8 length: increased (>)

27) Gene 9 begins: decreased (<)
28) Gene 9 ends: decreased (<)
29) Gene 9 length: no change (=)

30) Gene 10 begins: decreased (<)
31) Gene 10 ends: decreased (<)
32) Gene 10 length: no change (=)

33) Gene 11 begins: decreased (<)
34) Gene 11 ends: decreased (<)
35) Gene 11 length: no change (=)



Pattern '56':
(">=<<=<<><<=<<=<<=<<=<<=<<=<<=<<=<<=")
Found in 23 SARS-CoV-2 viruses.


Pattern '56' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: decreased (<)
4) Gene 1 ends: decreased (<)
5) Gene 1 length: no change (=)

6) Gene 2 begins: decreased (<)
7) Gene 2 ends: decreased (<)
8) Gene 2 length: increased (>)

9) Gene 3 begins: decreased (<)
10) Gene 3 ends: decreased (<)
11) Gene 3 length: no change (=)

12) Gene 4 begins: decreased (<)
13) Gene 4 ends: decreased (<)
14) Gene 4 length: no change (=)

15) Gene 5 begins: decreased (<)
16) Gene 5 ends: decreased (<)
17) Gene 5 length: no change (=)

18) Gene 6 begins: decreased (<)
19) Gene 6 ends: decreased (<)
20) Gene 6 length: no change (=)

21) Gene 7 begins: decreased (<)
22) Gene 7 ends: decreased (<)
23) Gene 7 length: no change (=)

24) Gene 8 begins: decreased (<)
25) Gene 8 ends: decreased (<)
26) Gene 8 length: no change (=)

27) Gene 9 begins: decreased (<)
28) Gene 9 ends: decreased (<)
29) Gene 9 length: no change (=)

30) Gene 10 begins: decreased (<)
31) Gene 10 ends: decreased (<)
32) Gene 10 length: no change (=)

33) Gene 11 begins: decreased (<)
34) Gene 11 ends: decreased (<)
35) Gene 11 length: no change (=)



Pattern '57':
("========================>>=========")
Found in 2 SARS-CoV-2 viruses.


Pattern '57' positions:

1) Nucleotide Length: no change (=)
2) Gene Count: no change (=)

3) Gene 1 begins: no change (=)
4) Gene 1 ends: no change (=)
5) Gene 1 length: no change (=)

6) Gene 2 begins: no change (=)
7) Gene 2 ends: no change (=)
8) Gene 2 length: no change (=)

9) Gene 3 begins: no change (=)
10) Gene 3 ends: no change (=)
11) Gene 3 length: no change (=)

12) Gene 4 begins: no change (=)
13) Gene 4 ends: no change (=)
14) Gene 4 length: no change (=)

15) Gene 5 begins: no change (=)
16) Gene 5 ends: no change (=)
17) Gene 5 length: no change (=)

18) Gene 6 begins: no change (=)
19) Gene 6 ends: no change (=)
20) Gene 6 length: no change (=)

21) Gene 7 begins: no change (=)
22) Gene 7 ends: no change (=)
23) Gene 7 length: no change (=)

24) Gene 8 begins: no change (=)
25) Gene 8 ends: increased (>)
26) Gene 8 length: increased (>)

27) Gene 9 begins: no change (=)
28) Gene 9 ends: no change (=)
29) Gene 9 length: no change (=)

30) Gene 10 begins: no change (=)
31) Gene 10 ends: no change (=)
32) Gene 10 length: no change (=)

33) Gene 11 begins: no change (=)
34) Gene 11 ends: no change (=)
35) Gene 11 length: no change (=)



Pattern '58':
(">=====>>>>=>>=>>=>>=>>=>>=>>>>>=>>=")
Found in 392 SARS-CoV-2 viruses.


Pattern '58' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: no change (=)
4) Gene 1 ends: no change (=)
5) Gene 1 length: no change (=)

6) Gene 2 begins: no change (=)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: increased (>)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '59':
(">==>>>>>>>=>>=>>=>>=>>=>>=>>=>>>>>=")
Found in 1 SARS-CoV-2 virus.


Pattern '59' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: no change (=)
4) Gene 1 ends: increased (>)
5) Gene 1 length: increased (>)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: increased (>)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '60':
("<=>>>>>>>>=>>=>>=>>=>>=>>=>>>>>=>>=")
Found in 309 SARS-CoV-2 viruses.


Pattern '60' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: increased (>)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: increased (>)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '61':
("<=>>=>>>>>=>>=>>=>>=>>=>>=>>=>>=>>=")
Found in 9 SARS-CoV-2 viruses.


Pattern '61' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '62':
("<=>>>>>=>>=>>=>>=>>=>>=>>=>>=>>=>>=")
Found in 44 SARS-CoV-2 viruses.


Pattern '62' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: increased (>)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '63':
("<=>>=>>=>><>>=>>=>>=>>=>>=>>=>>=>>=")
Found in 1 SARS-CoV-2 virus.


Pattern '63' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: decreased (<)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '64':
("<==>>>>>>>=>>=>>=>>=>>=>>=>>>>>=>>=")
Found in 2 SARS-CoV-2 viruses.


Pattern '64' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: no change (=)
4) Gene 1 ends: increased (>)
5) Gene 1 length: increased (>)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: increased (>)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '65':
("<=>>=>>>>>=>>=>>=>>=>>=>>=>>>>>=>>=")
Found in 66 SARS-CoV-2 viruses.


Pattern '65' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: increased (>)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '66':
("<=>>=>>>>>=>>=>>=>>=>>=>>=>><>>=>>=")
Found in 1 SARS-CoV-2 virus.


Pattern '66' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: decreased (<)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '67':
("<=>>>>>>>>=>>=>>=>>=>>=>>=>>=>>=>>=")
Found in 10 SARS-CoV-2 viruses.


Pattern '67' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: increased (>)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '68':
("<=====>>>>=>>=>>=>>=>>=>>=>>=>>=>>=")
Found in 3 SARS-CoV-2 viruses.


Pattern '68' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: no change (=)
4) Gene 1 ends: no change (=)
5) Gene 1 length: no change (=)

6) Gene 2 begins: no change (=)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '69':
("<=====>>>>=>>=>>=>>=>>=>>=>>>>>=>>=")
Found in 8 SARS-CoV-2 viruses.


Pattern '69' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: no change (=)
4) Gene 1 ends: no change (=)
5) Gene 1 length: no change (=)

6) Gene 2 begins: no change (=)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: increased (>)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '70':
("<=<<=<>>>>=>>=>>=>>=>>=>>=>>>>>=>>=")
Found in 5 SARS-CoV-2 viruses.


Pattern '70' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: decreased (<)
4) Gene 1 ends: decreased (<)
5) Gene 1 length: no change (=)

6) Gene 2 begins: decreased (<)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: increased (>)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '71':
(">=>>=>>>>>=>>=>>=>>=>>=>>=>>>>>=>>=")
Found in 2,676 SARS-CoV-2 viruses.


Pattern '71' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: increased (>)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '72':
(">=<<=<>>>>=>>=>>=>>=>>=>>=>>>>>=>>=")
Found in 7 SARS-CoV-2 viruses.


Pattern '72' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: decreased (<)
4) Gene 1 ends: decreased (<)
5) Gene 1 length: no change (=)

6) Gene 2 begins: decreased (<)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: increased (>)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '73':
("<=>>=>>>>>=>>=>>=>>=>>>>>=>>>>>=>>=")
Found in 2 SARS-CoV-2 viruses.


Pattern '73' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: increased (>)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: increased (>)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '74':
("<=>>=>>>>><>>=>>=>>=>>=>>=>>>>>=>>=")
Found in 2 SARS-CoV-2 viruses.


Pattern '74' positions:

1) Nucleotide Length: decreased (<)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: decreased (<)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: increased (>)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)



Pattern '75':
(">=>>=>>=>>=>>=>>=>>=>>=>>=>>=>>=>>>")
Found in 6 SARS-CoV-2 viruses.


Pattern '75' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: increased (>)
4) Gene 1 ends: increased (>)
5) Gene 1 length: no change (=)

6) Gene 2 begins: increased (>)
7) Gene 2 ends: increased (>)
8) Gene 2 length: no change (=)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: increased (>)



Pattern '76':
(">=<<=<>>>>=>>=>>=>>=>>=>>=>>=>>=>>=")
Found in 4 SARS-CoV-2 viruses.


Pattern '76' positions:

1) Nucleotide Length: increased (>)
2) Gene Count: no change (=)

3) Gene 1 begins: decreased (<)
4) Gene 1 ends: decreased (<)
5) Gene 1 length: no change (=)

6) Gene 2 begins: decreased (<)
7) Gene 2 ends: increased (>)
8) Gene 2 length: increased (>)

9) Gene 3 begins: increased (>)
10) Gene 3 ends: increased (>)
11) Gene 3 length: no change (=)

12) Gene 4 begins: increased (>)
13) Gene 4 ends: increased (>)
14) Gene 4 length: no change (=)

15) Gene 5 begins: increased (>)
16) Gene 5 ends: increased (>)
17) Gene 5 length: no change (=)

18) Gene 6 begins: increased (>)
19) Gene 6 ends: increased (>)
20) Gene 6 length: no change (=)

21) Gene 7 begins: increased (>)
22) Gene 7 ends: increased (>)
23) Gene 7 length: no change (=)

24) Gene 8 begins: increased (>)
25) Gene 8 ends: increased (>)
26) Gene 8 length: no change (=)

27) Gene 9 begins: increased (>)
28) Gene 9 ends: increased (>)
29) Gene 9 length: no change (=)

30) Gene 10 begins: increased (>)
31) Gene 10 ends: increased (>)
32) Gene 10 length: no change (=)

33) Gene 11 begins: increased (>)
34) Gene 11 ends: increased (>)
35) Gene 11 length: no change (=)

No comments:

Post a Comment