Fig. 1 Where da atoms at?
I. High Altitude
In the first post of this series I took up the notion that sometimes our reference data is not up to par:
"The human reference genome is the most widely used resource in human genetics and is due for a major update. Its current structure is a linear composite of merged haplotypes from more than 20 people, with a single individual comprising most of the sequence. It contains biases and errors within a framework that does not represent global human genomic variation."
(Pangenome ). That statement is from the "Human Pangenome Reference Consortium ".
Their purpose was to fix the existing, at that time, genome problem with new, more, and better genome sequences from humans at several additional locations.
It inspired me to get jiggy with it using ancient Egyptian, Australian, and Viking genome sequences, along with Pangenome data and other modern human DNA.
I intended to make some loose comparisons (ibid ).
But those comparisons were ("from 30,000 ft. " Fig. 1 ), in the sense that the material used was way up at the codon and gene elevation.
II. Flaps Down, Wheels Down
Then, in Quantum Biology - 20 and Quantum Biology - 21 we got down deep into the the realm of the nucleotide, then on down deeper into the atoms .
Continuing onward, I found an interesting numeric relationship in the percentage of atoms (carbon, hydrogen, nitrogen, and oxygen) that make-up the genomes of everything from SARS-CoV-2 to bacteria, and on to humans.
There was a percentage likeness somewhat like the "fine-structure constant" discussed in the beginning post of the "On The Origin of The Containment Entity " series.
Buckle up and brace for landing because I am presenting 44,557 example tables in today's many appendices (more about that shortly).
First though, here are the totals of what is in the appendices:
Summary information for all 44,557 HTML Tables: Atom Count Percent Carbon 21,952,735,032 32.41 Hydrogen 24,240,303,588 35.79 Nitrogen 16,947,174,100 25.02 Oxygen 4,597,805,747 6.79 Total 67,738,018,467 100.00
Yes, just for you readers I put together 44,547 Html Tables containing info about ~68 billion atoms (~22 billion carbon atoms, ~24 billion hydrogen atoms, ~17 billion nitrogen atoms, and ~4.5 billion oxygen atoms).
But that is not the big picture, no, the similarity of percentages of the 44,547 genomes of 44,547 "organisms" (assuming fungi, microbes, ancient homo sapiens, modern homo sapiens, and SARS-CoV-2 are "organisms").
What we homo sapiens seem to always have had in common with other biological and viral entities that have DNA and/or RNA is the neologism "atomic synteny ratio" (Cx1 Hx2 Nx3 Ox4 ).
Can we say "it's the percent stupid"?
I mean the total atomic average percent for all those 44,547 genomes is (carbon 32.41% , hydrogen 35.79% , nitrogen 25.02% , and oxygen 6.79% ) in significantly close ratios throughout those genomes.
That percentage likeness has an x-range of x1 = ~31% to ~36%, x2 = ~33% to ~36%, x3 = ~24% to ~27% and x4 = ~5% to ~7%.
That is (C arbon31%-36% H ydrogen33%-36% N itrogen24%-27% O xygen5%-7% ) atomic ratio percents in genomes of every imaginable organism's DNA/RNA.
It becomes a striking factor when you see them in the appendix tables , which by the way, have a summary following each 100 organisms.
The tables are: number (1 to 44547), so if you have a question or comment refer to the table number and the organism.
The great bulk of them also have a GenBank link (version number) so you can click on it if you want to see the minute details of the genome.
III. General Organism, Virus, and Human Content
Here are some table locations (table numbers) to prime your interest (countries are generally represented by three upper-case letters (AUS=Australia, CHN=China, and the table numbers by, you guessed it, three numbers: 737=table #737, etc.):
Human AUS-737, BRA-783, IND-738,758 CHN-751,757,765,778-782,784-787,828.989-1003,1012-1017 COL-1004, ESP-827,830-832, Ancient Egypt-490 HKG-769-776,819,829, ITA-759,763, NPL-762, PAK-834,1082, PER-1083, SWE-764, TWN-760-761,823 VNM-825-826, USA-all other not listed above, thru table# 1150 Mix (mixture of microbe & human genome averages) Tables 601-711Other (The other tables are mixtures from various countries) IV. How The Tables Are Made
I won't go into the C++ and HTML programming involved, because that might put you "to the moon ".
The process is:
1) download the genome from an online database like GenBank
2) Count the 'A', 'C', 'G', 'T' and/or 'U' nucleotide atoms ("Atom" column in the table specifies the type of atom )
3) count the number of atoms in each nucleotide ("Count" column in the table)
4) multiply by the atom count by the nucleotide count
5) divide each A,C,G,T,U value by the total atom count per organism ("Percent" column in the table) and viola, that is the percentage of each nucleotide's atoms in that "organism's" genome.
V. The Menu
The final tables (44423-44547) concerning ribosome DNA/RNA is featured below (rather than in an appendix).
VI. Closing Comments
The import of this discovery/observation is not trivial, nor is the fact that we do not have exact matching average values throughout.
For example, the enigmatic physics "1/137" value, aka the "fine-structure constant " is not one exact number - it is a range.
Yet, it is a celebrated thingy with physicists (NIST ).
Therefore, I think this "atomic synteny ratio" is an important consideration in the ongoing containment entity research (On The Origin of The Containment Entity , 2 , 3 , 4 , 5 , 6 , 7 ).
Perhaps the "atomic synteny ratio" could be too, because it even applies to ribosomes:
The following tables are the rMRA genomes (tables 44423 - 44557) that are not in an appendix).
The data came from here @(in the file "pnas.1407205111.sd02.fas").
Note that "Invalid Nucleotide Count" in the tables below refers to the number of dash "-" characters in the ribosome genome presented in the fasta file ("pnas.1407205111.sd02.fas") for that organism.
Table: 44423 Organism: Acinetobacter Nucleotide count: 2,876 Invalid Nucleotide Count: 6,161 Atom Count Percent Carbon 13,148 32.14 Hydrogen 13,744 33.60 Nitrogen 11,280 27.58 Oxygen 2,734 6.68 Totals 40,906 100.00
Table: 44424 Organism: Agrobacterium tumefaciens Nucleotide count: 2,771 Invalid Nucleotide Count: 6,266 Atom Count Percent Carbon 12,666 32.11 Hydrogen 13,279 33.66 Nitrogen 10,901 27.63 Oxygen 2,604 6.60 Totals 39,450 100.00
Table: 44425 Organism: Anabaena variabilis Nucleotide count: 2,830 Invalid Nucleotide Count: 6,207 Atom Count Percent Carbon 13,012 32.13 Hydrogen 13,607 33.59 Nitrogen 11,331 27.98 Oxygen 2,554 6.31 Totals 40,504 100.00
Table: 44426 Organism: Azoarcus Nucleotide count: 2,885 Invalid Nucleotide Count: 6,152 Atom Count Percent Carbon 13,205 32.06 Hydrogen 13,858 33.65 Nitrogen 11,418 27.72 Oxygen 2,707 6.57 Totals 41,188 100.00
Table: 44427 Organism: Bacillus anthracis Nucleotide count: 2,908 Invalid Nucleotide Count: 6,129 Atom Count Percent Carbon 13,313 32.12 Hydrogen 13,933 33.61 Nitrogen 11,479 27.69 Oxygen 2,725 6.57 Totals 41,450 100.00
Table: 44428 Organism: Bacteroides thetaiotaomicron Nucleotide count: 2,858 Invalid Nucleotide Count: 6,179 Atom Count Percent Carbon 13,062 32.18 Hydrogen 13,638 33.60 Nitrogen 11,182 27.55 Oxygen 2,709 6.67 Totals 40,591 100.00
Table: 44429 Organism: Bartonella henselae Nucleotide count: 2,811 Invalid Nucleotide Count: 6,226 Atom Count Percent Carbon 12,838 32.14 Hydrogen 13,445 33.66 Nitrogen 11,011 27.56 Oxygen 2,653 6.64 Totals 39,947 100.00
Table: 44430 Organism: Bifidobacterium longum Nucleotide count: 3,066 Invalid Nucleotide Count: 5,971 Atom Count Percent Carbon 13,979 31.94 Hydrogen 14,757 33.72 Nitrogen 12,055 27.55 Oxygen 2,972 6.79 Totals 43,763 100.00
Table: 44431 Organism: Blochmannia floridanus Nucleotide count: 3,033 Invalid Nucleotide Count: 6,004 Atom Count Percent Carbon 13,872 32.29 Hydrogen 14,403 33.52 Nitrogen 11,817 27.50 Oxygen 2,872 6.68 Totals 42,964 100.00
Table: 44432 Organism: Bradyrhizobium japonicum Nucleotide count: 2,874 Invalid Nucleotide Count: 6,163 Atom Count Percent Carbon 13,131 32.08 Hydrogen 13,785 33.68 Nitrogen 11,307 27.63 Oxygen 2,707 6.61 Totals 40,930 100.00
Table: 44433 Organism: Buchnera aphidicola Nucleotide count: 2,913 Invalid Nucleotide Count: 6,124 Atom Count Percent Carbon 13,342 32.23 Hydrogen 13,918 33.62 Nitrogen 11,472 27.71 Oxygen 2,666 6.44 Totals 41,398 100.00
Table: 44434 Organism: Burkholderia Nucleotide count: 2,882 Invalid Nucleotide Count: 6,155 Atom Count Percent Carbon 13,177 32.10 Hydrogen 13,801 33.62 Nitrogen 11,335 27.61 Oxygen 2,742 6.68 Totals 41,055 100.00
Table: 44435 Organism: Caulobacter crescentus Nucleotide count: 2,789 Invalid Nucleotide Count: 6,248 Atom Count Percent Carbon 12,744 32.06 Hydrogen 13,396 33.70 Nitrogen 10,994 27.66 Oxygen 2,611 6.57 Totals 39,745 100.00
Table: 44436 Organism: Chlamydophila caviae Nucleotide count: 2,939 Invalid Nucleotide Count: 6,098 Atom Count Percent Carbon 13,429 32.23 Hydrogen 13,995 33.59 Nitrogen 11,463 27.52 Oxygen 2,773 6.66 Totals 41,660 100.00
Table: 44437 Organism: Chlorobium tepidum Nucleotide count: 2,915 Invalid Nucleotide Count: 6,122 Atom Count Percent Carbon 13,335 32.12 Hydrogen 13,967 33.65 Nitrogen 11,487 27.67 Oxygen 2,722 6.56 Totals 41,511 100.00
Table: 44438 Organism: Coxiella burnetii Nucleotide count: 2,897 Invalid Nucleotide Count: 6,140 Atom Count Percent Carbon 13,242 32.14 Hydrogen 13,854 33.62 Nitrogen 11,368 27.59 Oxygen 2,741 6.65 Totals 41,205 100.00
Table: 44439 Organism: Crocosphaera watsonii Nucleotide count: 2,814 Invalid Nucleotide Count: 6,223 Atom Count Percent Carbon 12,916 32.12 Hydrogen 13,520 33.62 Nitrogen 11,212 27.88 Oxygen 2,568 6.39 Totals 40,216 100.00
Table: 44440 Organism: Cytophaga hutchinsonii Nucleotide count: 2,869 Invalid Nucleotide Count: 6,168 Atom Count Percent Carbon 13,146 32.17 Hydrogen 13,722 33.58 Nitrogen 11,324 27.71 Oxygen 2,670 6.53 Totals 40,862 100.00
Table: 44441 Organism: Dechloromonas aromatica Nucleotide count: 2,882 Invalid Nucleotide Count: 6,155 Atom Count Percent Carbon 13,193 32.11 Hydrogen 13,810 33.61 Nitrogen 11,376 27.69 Oxygen 2,705 6.58 Totals 41,084 100.00
Table: 44442 Organism: Dehalococcoides ethenogenes Nucleotide count: 2,840 Invalid Nucleotide Count: 6,197 Atom Count Percent Carbon 12,998 32.11 Hydrogen 13,608 33.62 Nitrogen 11,204 27.68 Oxygen 2,664 6.58 Totals 40,474 100.00
Table: 44443 Organism: Deinococcus radiodurans Nucleotide count: 2,874 Invalid Nucleotide Count: 6,163 Atom Count Percent Carbon 13,136 32.04 Hydrogen 13,822 33.71 Nitrogen 11,354 27.69 Oxygen 2,687 6.55 Totals 40,999 100.00
Table: 44444 Organism: Escherichia coli
Nucleotide count: 2,904 Invalid Nucleotide Count: 6,133 Atom Count Percent Carbon 13,290 32.09 Hydrogen 13,929 33.63 Nitrogen 11,469 27.69 Oxygen 2,733 6.60 Totals 41,421 100.00
Table: 44445 Organism: Fusobacterium nucleatum
Nucleotide count: 2,908 Invalid Nucleotide Count: 6,129 Atom Count Percent Carbon 13,333 32.23 Hydrogen 13,873 33.54 Nitrogen 11,459 27.70 Oxygen 2,699 6.52 Totals 41,364 100.00
Table: 44446 Organism: Geobacillus kaustophilus
Nucleotide count: 2,930 Invalid Nucleotide Count: 6,107 Atom Count Percent Carbon 13,448 31.99 Hydrogen 14,147 33.65 Nitrogen 11,743 27.93 Oxygen 2,700 6.42 Totals 42,038 100.00
Table: 44447 Organism: Geobacter sulfurreducens
Nucleotide count: 2,958 Invalid Nucleotide Count: 6,079 Atom Count Percent Carbon 13,532 32.07 Hydrogen 14,203 33.66 Nitrogen 11,687 27.70 Oxygen 2,775 6.58 Totals 42,197 100.00
Table: 44448 Organism: Gloeobacter violaceus
Nucleotide count: 2,781 Invalid Nucleotide Count: 6,256 Atom Count Percent Carbon 12,751 32.06 Hydrogen 13,380 33.64 Nitrogen 11,072 27.84 Oxygen 2,574 6.47 Totals 39,777 100.00
Table: 44449 Organism: Gluconobacter oxydans
Nucleotide count: 2,710 Invalid Nucleotide Count: 6,327 Atom Count Percent Carbon 12,399 32.05 Hydrogen 13,032 33.69 Nitrogen 10,730 27.74 Oxygen 2,522 6.52 Totals 38,683 100.00
Table: 44450 Organism: Haemophilus influenzae
Nucleotide count: 2,897 Invalid Nucleotide Count: 6,140 Atom Count Percent Carbon 13,285 32.17 Hydrogen 13,860 33.56 Nitrogen 11,460 27.75 Oxygen 2,693 6.52 Totals 41,298 100.00
Table: 44451 Organism: Helicobacter hepaticus
Nucleotide count: 2,880 Invalid Nucleotide Count: 6,157 Atom Count Percent Carbon 13,164 32.19 Hydrogen 13,748 33.62 Nitrogen 11,276 27.57 Oxygen 2,705 6.61 Totals 40,893 100.00
Table: 44452 Organism: Legionella pneumophila
Nucleotide count: 2,835 Invalid Nucleotide Count: 6,202 Atom Count Percent Carbon 12,995 32.12 Hydrogen 13,572 33.55 Nitrogen 11,212 27.71 Oxygen 2,680 6.62 Totals 40,459 100.00
Table: 44453 Organism: Leifsonia xyli
Nucleotide count: 3,107 Invalid Nucleotide Count: 5,930 Atom Count Percent Carbon 14,198 32.06 Hydrogen 14,904 33.66 Nitrogen 12,230 27.62 Oxygen 2,951 6.66 Totals 44,283 100.00
Table: 44454 Organism: Listeria monocytogenes
Nucleotide count: 2,931 Invalid Nucleotide Count: 6,106 Atom Count Percent Carbon 13,441 32.12 Hydrogen 14,065 33.61 Nitrogen 11,637 27.81 Oxygen 2,704 6.46 Totals 41,847 100.00
Table: 44455 Organism: Magnetococcus
Nucleotide count: 2,846 Invalid Nucleotide Count: 6,191 Atom Count Percent Carbon 13,028 32.11 Hydrogen 13,647 33.63 Nitrogen 11,243 27.71 Oxygen 2,657 6.55 Totals 40,575 100.00
Table: 44456 Organism: Magnetospirillum magnetotacticum
Nucleotide count: 2,739 Invalid Nucleotide Count: 6,298 Atom Count Percent Carbon 12,523 32.04 Hydrogen 13,184 33.73 Nitrogen 10,840 27.73 Oxygen 2,539 6.50 Totals 39,086 100.00
Table: 44457 Organism: Mesoplasma florum
Nucleotide count: 2,897 Invalid Nucleotide Count: 6,140 Atom Count Percent Carbon 13,245 32.21 Hydrogen 13,810 33.59 Nitrogen 11,330 27.55 Oxygen 2,734 6.65 Totals 41,119 100.00
Table: 44458 Organism: Mycobacterium leprae
Nucleotide count: 3,122 Invalid Nucleotide Count: 5,915 Atom Count Percent Carbon 14,263 32.05 Hydrogen 14,978 33.65 Nitrogen 12,284 27.60 Oxygen 2,984 6.70 Totals 44,509 100.00
Table: 44459 Organism: Neisseria gonorrhoeae
Nucleotide count: 2,879 Invalid Nucleotide Count: 6,158 Atom Count Percent Carbon 13,178 32.11 Hydrogen 13,802 33.63 Nitrogen 11,368 27.70 Oxygen 2,697 6.57 Totals 41,045 100.00
Table: 44460 Organism: Nitrosomonas europaea
Nucleotide count: 2,886 Invalid Nucleotide Count: 6,151 Atom Count Percent Carbon 13,214 32.19 Hydrogen 13,775 33.56 Nitrogen 11,343 27.63 Oxygen 2,717 6.62 Totals 41,049 100.00
Table: 44461 Organism: Novosphingobium aromaticivorans
Nucleotide count: 2,783 Invalid Nucleotide Count: 6,254 Atom Count Percent Carbon 12,709 32.07 Hydrogen 13,337 33.66 Nitrogen 10,925 27.57 Oxygen 2,652 6.69 Totals 39,623 100.00
Table: 44462 Organism: Oceanobacillus iheyensis
Nucleotide count: 2,922 Invalid Nucleotide Count: 6,115 Atom Count Percent Carbon 13,376 32.11 Hydrogen 14,014 33.64 Nitrogen 11,546 27.72 Oxygen 2,722 6.53 Totals 41,658 100.00
Table: 44463 Organism: Photorhabdus luminescens
Nucleotide count: 2,909 Invalid Nucleotide Count: 6,128 Atom Count Percent Carbon 13,344 32.06 Hydrogen 13,982 33.60 Nitrogen 11,580 27.83 Oxygen 2,710 6.51 Totals 41,616 100.00
Table: 44464 Organism: Polaromonas
Nucleotide count: 2,879 Invalid Nucleotide Count: 6,158 Atom Count Percent Carbon 13,162 32.13 Hydrogen 13,767 33.61 Nitrogen 11,301 27.59 Oxygen 2,729 6.66 Totals 40,959 100.00
Table: 44465 Organism: Porphyromonas gingivalis
Nucleotide count: 2,884 Invalid Nucleotide Count: 6,153 Atom Count Percent Carbon 13,215 32.15 Hydrogen 13,814 33.61 Nitrogen 11,404 27.75 Oxygen 2,667 6.49 Totals 41,100 100.00
Table: 44466 Organism: Propionibacterium acnes
Nucleotide count: 3,063 Invalid Nucleotide Count: 5,974 Atom Count Percent Carbon 14,006 32.03 Hydrogen 14,623 33.44 Nitrogen 12,005 27.45 Oxygen 3,095 7.08 Totals 43,729 100.00
Table: 44467 Organism: Pseudomonas aeruginosa
Nucleotide count: 2,891 Invalid Nucleotide Count: 6,146 Atom Count Percent Carbon 13,218 32.10 Hydrogen 13,840 33.61 Nitrogen 11,366 27.60 Oxygen 2,750 6.68 Totals 41,174 100.00
Table: 44468 Organism: Ralstonia eutropha
Nucleotide count: 2,881 Invalid Nucleotide Count: 6,156 Atom Count Percent Carbon 13,183 32.08 Hydrogen 13,811 33.61 Nitrogen 11,367 27.66 Oxygen 2,732 6.65 Totals 41,093 100.00
Table: 44469 Organism: Rhodobacter sphaeroides
Nucleotide count: 2,904 Invalid Nucleotide Count: 6,133 Atom Count Percent Carbon 13,265 32.03 Hydrogen 13,973 33.74 Nitrogen 11,463 27.68 Oxygen 2,713 6.55 Totals 41,414 100.00
Table: 44470 Organism: Rhodopirellula baltica
Nucleotide count: 2,891 Invalid Nucleotide Count: 6,146 Atom Count Percent Carbon 13,214 32.13 Hydrogen 13,837 33.64 Nitrogen 11,355 27.61 Oxygen 2,727 6.63 Totals 41,133 100.00
Table: 44471 Organism: Shewanella oneidensis
Nucleotide count: 2,893 Invalid Nucleotide Count: 6,144 Atom Count Percent Carbon 13,235 32.13 Hydrogen 13,845 33.61 Nitrogen 11,385 27.64 Oxygen 2,729 6.62 Totals 41,194 100.00
Table: 44472 Organism: Sinorhizobium meliloti
Nucleotide count: 2,859 Invalid Nucleotide Count: 6,178 Atom Count Percent Carbon 13,064 32.08 Hydrogen 13,715 33.68 Nitrogen 11,253 27.63 Oxygen 2,693 6.61 Totals 40,725 100.00
Table: 44473 Organism: Staphylococcus aureus
Nucleotide count: 2,925 Invalid Nucleotide Count: 6,112 Atom Count Percent Carbon 13,373 32.16 Hydrogen 13,970 33.60 Nitrogen 11,466 27.58 Oxygen 2,772 6.67 Totals 41,581 100.00
Table: 44474 Organism: Streptococcus pneumoniae
Nucleotide count: 2,902 Invalid Nucleotide Count: 6,135 Atom Count Percent Carbon 13,291 32.17 Hydrogen 13,878 33.59 Nitrogen 11,440 27.69 Oxygen 2,712 6.56 Totals 41,321 100.00
Table: 44475 Organism: Streptomyces coelicolor
Nucleotide count: 3,122 Invalid Nucleotide Count: 5,915 Atom Count Percent Carbon 14,265 32.00 Hydrogen 14,983 33.61 Nitrogen 12,293 27.58 Oxygen 3,039 6.82 Totals 44,580 100.00
Table: 44476 Organism: Symbiobacterium thermophilum
Nucleotide count: 2,946 Invalid Nucleotide Count: 6,091 Atom Count Percent Carbon 13,526 31.95 Hydrogen 14,264 33.69 Nitrogen 11,856 28.00 Oxygen 2,695 6.36 Totals 42,341 100.00
Table: 44477 Organism: Synechococcus
Nucleotide count: 2,882 Invalid Nucleotide Count: 6,155 Atom Count Percent Carbon 13,223 32.13 Hydrogen 13,825 33.59 Nitrogen 11,451 27.82 Oxygen 2,661 6.47 Totals 41,160 100.00
Table: 44478 Organism: Synechocystis
Nucleotide count: 2,883 Invalid Nucleotide Count: 6,154 Atom Count Percent Carbon 13,247 32.12 Hydrogen 13,848 33.58 Nitrogen 11,512 27.91 Oxygen 2,634 6.39 Totals 41,241 100.00
Table: 44479 Organism: Thermoanaerobacter tengcongensis
Nucleotide count: 2,965 Invalid Nucleotide Count: 6,072 Atom Count Percent Carbon 13,680 31.98 Hydrogen 14,376 33.61 Nitrogen 12,086 28.25 Oxygen 2,633 6.16 Totals 42,775 100.00
Table: 44480 Organism: Thermosynechococcus elongatus
Nucleotide count: 2,869 Invalid Nucleotide Count: 6,168 Atom Count Percent Carbon 13,149 32.08 Hydrogen 13,797 33.66 Nitrogen 11,405 27.82 Oxygen 2,641 6.44 Totals 40,992 100.00
Table: 44481 Organism: Thermotoga maritima
Nucleotide count: 3,021 Invalid Nucleotide Count: 6,016 Atom Count Percent Carbon 13,836 31.87 Hydrogen 14,647 33.74 Nitrogen 12,109 27.89 Oxygen 2,819 6.49 Totals 43,411 100.00
Table: 44482 Organism: Thermus thermophilus
Nucleotide count: 2,911 Invalid Nucleotide Count: 6,126 Atom Count Percent Carbon 13,346 31.86 Hydrogen 14,137 33.74 Nitrogen 11,719 27.97 Oxygen 2,693 6.43 Totals 41,895 100.00
Table: 44483 Organism: Treponema pallidum
Nucleotide count: 2,947 Invalid Nucleotide Count: 6,090 Atom Count Percent Carbon 13,509 32.12 Hydrogen 14,107 33.54 Nitrogen 11,655 27.71 Oxygen 2,792 6.64 Totals 42,063 100.00
Table: 44484 Organism: Tropheryma whipplei
Nucleotide count: 3,099 Invalid Nucleotide Count: 5,938 Atom Count Percent Carbon 14,146 32.07 Hydrogen 14,851 33.66 Nitrogen 12,153 27.55 Oxygen 2,965 6.72 Totals 44,115 100.00
Table: 44485 Organism: VibrioVibrio cholerae
Nucleotide count: 2,887 Invalid Nucleotide Count: 6,150 Atom Count Percent Carbon 13,195 32.11 Hydrogen 13,815 33.62 Nitrogen 11,335 27.59 Oxygen 2,744 6.68 Totals 41,089 100.00
Table: 44486 Organism: Wolbachia endosymbiont
Nucleotide count: 2,789 Invalid Nucleotide Count: 6,248 Atom Count Percent Carbon 12,744 32.30 Hydrogen 13,224 33.51 Nitrogen 10,822 27.43 Oxygen 2,670 6.77 Totals 39,460 100.00
Table: 44487 Organism: Xanthomonas axonopodis
Nucleotide count: 2,881 Invalid Nucleotide Count: 6,156 Atom Count Percent Carbon 13,172 32.08 Hydrogen 13,817 33.65 Nitrogen 11,351 27.65 Oxygen 2,715 6.61 Totals 41,055 100.00
Table: 44488 Organism: Yersinia pestis
Nucleotide count: 2,907 Invalid Nucleotide Count: 6,130 Atom Count Percent Carbon 13,305 32.10 Hydrogen 13,932 33.62 Nitrogen 11,472 27.68 Oxygen 2,736 6.60 Totals 41,445 100.00
Table: 44489 Organism: Zymomonas mobilis
Nucleotide count: 2,784 Invalid Nucleotide Count: 6,253 Atom Count Percent Carbon 12,716 32.13 Hydrogen 13,319 33.65 Nitrogen 10,911 27.57 Oxygen 2,635 6.66 Totals 39,581 100.00
Table: 44490 Organism: Aeropyrum pernix
Nucleotide count: 3,083 Invalid Nucleotide Count: 5,954 Atom Count Percent Carbon 14,100 31.73 Hydrogen 15,043 33.86 Nitrogen 12,413 27.94 Oxygen 2,875 6.47 Totals 44,431 100.00
Table: 44491 Organism: Archaeoglobus fulgidus
Nucleotide count: 2,932 Invalid Nucleotide Count: 6,105 Atom Count Percent Carbon 13,415 31.88 Hydrogen 14,205 33.76 Nitrogen 11,715 27.84 Oxygen 2,746 6.53 Totals 42,081 100.00
Table: 44492 Organism: Caldivirga maquilingensis
Nucleotide count: 3,030 Invalid Nucleotide Count: 6,007 Atom Count Percent Carbon 13,837 31.84 Hydrogen 14,679 33.78 Nitrogen 12,053 27.74 Oxygen 2,886 6.64 Totals 43,455 100.00
Table: 44493 Organism: Haloarcula marismortui
Nucleotide count: 2,923 Invalid Nucleotide Count: 6,114 Atom Count Percent Carbon 13,338 32.03 Hydrogen 14,075 33.80 Nitrogen 11,521 27.67 Oxygen 2,706 6.50 Totals 41,640 100.00
Table: 44494 Organism: Halobacterium
Nucleotide count: 2,906 Invalid Nucleotide Count: 6,131 Atom Count Percent Carbon 13,274 32.02 Hydrogen 13,988 33.75 Nitrogen 11,476 27.69 Oxygen 2,714 6.55 Totals 41,452 100.00
Table: 44495 Organism: Haloferax volcanii
Nucleotide count: 2,910 Invalid Nucleotide Count: 6,127 Atom Count Percent Carbon 13,281 32.04 Hydrogen 14,006 33.79 Nitrogen 11,468 27.67 Oxygen 2,692 6.50 Totals 41,447 100.00
Table: 44496 Organism: Haloquadratum walsbyi
Nucleotide count: 2,918 Invalid Nucleotide Count: 6,119 Atom Count Percent Carbon 13,291 32.03 Hydrogen 14,058 33.88 Nitrogen 11,460 27.62 Oxygen 2,681 6.46 Totals 41,490 100.00
Table: 44497 Organism: Halorubrum lacusprofundi
Nucleotide count: 2,903 Invalid Nucleotide Count: 6,134 Atom Count Percent Carbon 13,264 32.01 Hydrogen 14,004 33.80 Nitrogen 11,502 27.76 Oxygen 2,661 6.42 Totals 41,431 100.00
Table: 44498 Organism: Hyperthermus butylicus
Nucleotide count: 3,084 Invalid Nucleotide Count: 5,953 Atom Count Percent Carbon 14,107 31.73 Hydrogen 15,060 33.87 Nitrogen 12,434 27.97 Oxygen 2,860 6.43 Totals 44,461 100.00
Table: 44499 Organism: Ignicoccus hospitalis
Nucleotide count: 3,026 Invalid Nucleotide Count: 6,011 Atom Count Percent Carbon 13,832 31.74 Hydrogen 14,759 33.87 Nitrogen 12,163 27.91 Oxygen 2,821 6.47 Totals 43,575 100.00
Table: 44500 Organism: Metallosphaera sedula
Nucleotide count: 3,044 Invalid Nucleotide Count: 5,993 Atom Count Percent Carbon 13,917 31.91 Hydrogen 14,731 33.77 Nitrogen 12,125 27.80 Oxygen 2,845 6.52 Totals 43,618 100.00
Summary information for above tables: Atom High Percent Entity Low Percent Entity Variation Percent Carbon 32.30 Wolbachia 31.73 Hyperthermus 0.57 Hydrogen 33.88 Haloquadratum 33.44 Propionibacterium 0.44 Nitrogen 28.25 Thermoanaerobacter 27.43 Wolbachia 0.83 Oxygen 7.08 Propionibacterium 6.16 Thermoanaerobacter 0.92
Table: 44501 Organism: Methanocaldococcus jannaschii
Nucleotide count: 2,989 Invalid Nucleotide Count: 6,048 Atom Count Percent Carbon 13,675 31.86 Hydrogen 14,497 33.78 Nitrogen 11,957 27.86 Oxygen 2,790 6.50 Totals 42,919 100.00
Table: 44502 Organism: Methanococcoides burtonii
Nucleotide count: 2,917 Invalid Nucleotide Count: 6,120 Atom Count Percent Carbon 13,309 32.15 Hydrogen 13,929 33.65 Nitrogen 11,377 27.48 Oxygen 2,782 6.72 Totals 41,397 100.00
Table: 44503 Organism: Methanococcus aeolicus
Nucleotide count: 2,964 Invalid Nucleotide Count: 6,073 Atom Count Percent Carbon 13,522 32.10 Hydrogen 14,186 33.67 Nitrogen 11,590 27.51 Oxygen 2,832 6.72 Totals 42,130 100.00
Table: 44504 Organism: Methanocorpusculum labreanum
Nucleotide count: 2,886 Invalid Nucleotide Count: 6,151 Atom Count Percent Carbon 13,149 32.16 Hydrogen 13,763 33.67 Nitrogen 11,201 27.40 Oxygen 2,768 6.77 Totals 40,881 100.00
Table: 44505 Organism: Methanoculleus marisnigri
Nucleotide count: 2,898 Invalid Nucleotide Count: 6,139 Atom Count Percent Carbon 13,230 32.09 Hydrogen 13,882 33.67 Nitrogen 11,362 27.56 Oxygen 2,752 6.68 Totals 41,226 100.00
Table: 44506 Organism: Methanopyrus kandleri
Nucleotide count: 3,094 Invalid Nucleotide Count: 5,943 Atom Count Percent Carbon 14,162 31.74 Hydrogen 15,100 33.85 Nitrogen 12,484 27.98 Oxygen 2,866 6.42 Totals 44,612 100.00
Table: 44507 Organism: Methanoregula boonei
Nucleotide count: 2,899 Invalid Nucleotide Count: 6,138 Atom Count Percent Carbon 13,239 32.13 Hydrogen 13,870 33.66 Nitrogen 11,358 27.57 Oxygen 2,736 6.64 Totals 41,203 100.00
Table: 44508 Organism: Methanosaeta thermophila
Nucleotide count: 2,886 Invalid Nucleotide Count: 6,151 Atom Count Percent Carbon 13,204 31.98 Hydrogen 13,943 33.77 Nitrogen 11,491 27.83 Oxygen 2,654 6.43 Totals 41,292 100.00
Table: 44509 Organism: Methanosarcina acetivorans
Nucleotide count: 2,899 Invalid Nucleotide Count: 6,138 Atom Count Percent Carbon 13,201 32.08 Hydrogen 13,882 33.74 Nitrogen 11,294 27.45 Oxygen 2,771 6.73 Totals 41,148 100.00
Table: 44510 Organism: Methanosarcina barkeri
Nucleotide count: 2,895 Invalid Nucleotide Count: 6,142 Atom Count Percent Carbon 13,195 32.09 Hydrogen 13,873 33.74 Nitrogen 11,313 27.51 Oxygen 2,735 6.65 Totals 41,116 100.00
Table: 44511 Organism: Methanosarcina mazei
Nucleotide count: 2,893 Invalid Nucleotide Count: 6,144 Atom Count Percent Carbon 13,194 32.09 Hydrogen 13,867 33.72 Nitrogen 11,325 27.54 Oxygen 2,733 6.65 Totals 41,119 100.00
Table: 44512 Organism: Methanosphaera stadtmanae
Nucleotide count: 2,994 Invalid Nucleotide Count: 6,043 Atom Count Percent Carbon 13,596 32.25 Hydrogen 14,144 33.55 Nitrogen 11,396 27.03 Oxygen 3,025 7.17 Totals 42,161 100.00
Table: 44513 Organism: Methanospirillum hungatei
Nucleotide count: 2,910 Invalid Nucleotide Count: 6,127 Atom Count Percent Carbon 13,279 32.13 Hydrogen 13,920 33.69 Nitrogen 11,378 27.53 Oxygen 2,747 6.65 Totals 41,324 100.00
Table: 44514 Organism: Methanothermobacter thermautotrophicus
Nucleotide count: 3,035 Invalid Nucleotide Count: 6,002 Atom Count Percent Carbon 13,816 32.01 Hydrogen 14,485 33.55 Nitrogen 11,767 27.26 Oxygen 3,100 7.18 Totals 43,168 100.00
Table: 44515 Organism: Nanoarchaeum equitans
Nucleotide count: 2,955 Invalid Nucleotide Count: 6,082 Atom Count Percent Carbon 13,502 31.81 Hydrogen 14,356 33.82 Nitrogen 11,810 27.82 Oxygen 2,779 6.55 Totals 42,447 100.00
Table: 44516 Organism: Natronomonas pharaonis
Nucleotide count: 2,906 Invalid Nucleotide Count: 6,131 Atom Count Percent Carbon 13,260 31.99 Hydrogen 14,003 33.79 Nitrogen 11,463 27.66 Oxygen 2,718 6.56 Totals 41,444 100.00
Table: 44517 Organism: Picrophilus torridus
Nucleotide count: 2,893 Invalid Nucleotide Count: 6,144 Atom Count Percent Carbon 13,224 32.10 Hydrogen 13,869 33.67 Nitrogen 11,387 27.64 Oxygen 2,714 6.59 Totals 41,194 100.00
Table: 44518 Organism: Pyrobaculum calidifontis
Nucleotide count: 2,963 Invalid Nucleotide Count: 6,074 Atom Count Percent Carbon 13,557 31.77 Hydrogen 14,440 33.84 Nitrogen 11,924 27.94 Oxygen 2,752 6.45 Totals 42,673 100.00
Table: 44519 Organism: Pyrococcus furiosus
Nucleotide count: 3,044 Invalid Nucleotide Count: 5,993 Atom Count Percent Carbon 13,912 31.80 Hydrogen 14,788 33.81 Nitrogen 12,172 27.83 Oxygen 2,871 6.56 Totals 43,743 100.00
Table: 44520 Organism: Staphylothermus marinus
Nucleotide count: 3,092 Invalid Nucleotide Count: 5,945 Atom Count Percent Carbon 14,146 31.78 Hydrogen 15,068 33.85 Nitrogen 12,440 27.95 Oxygen 2,859 6.42 Totals 44,513 100.00
Table: 44521 Organism: Sulfolobus acidocaldarius
Nucleotide count: 3,022 Invalid Nucleotide Count: 6,015 Atom Count Percent Carbon 13,811 31.93 Hydrogen 14,609 33.77 Nitrogen 12,011 27.77 Oxygen 2,827 6.54 Totals 43,258 100.00
Table: 44522 Organism: Sulfolobus tokodaii
Nucleotide count: 3,030 Invalid Nucleotide Count: 6,007 Atom Count Percent Carbon 13,853 31.85 Hydrogen 14,702 33.80 Nitrogen 12,108 27.84 Oxygen 2,829 6.50 Totals 43,492 100.00
Table: 44523 Organism: Thermococcus kodakarensis
Nucleotide count: 3,027 Invalid Nucleotide Count: 6,010 Atom Count Percent Carbon 13,841 31.82 Hydrogen 14,700 33.80 Nitrogen 12,112 27.85 Oxygen 2,843 6.54 Totals 43,496 100.00
Table: 44524 Organism: Thermofilum pendens
Nucleotide count: 3,059 Invalid Nucleotide Count: 5,978 Atom Count Percent Carbon 13,983 31.81 Hydrogen 14,869 33.82 Nitrogen 12,245 27.86 Oxygen 2,862 6.51 Totals 43,959 100.00
Table: 44525 Organism: Thermoplasma volcanium
Nucleotide count: 2,909 Invalid Nucleotide Count: 6,128 Atom Count Percent Carbon 13,297 32.10 Hydrogen 13,936 33.64 Nitrogen 11,440 27.62 Oxygen 2,749 6.64 Totals 41,422 100.00
Table: 44526 Organism: Adineta vaga
Nucleotide count: 3,851 Invalid Nucleotide Count: 5,186 Atom Count Percent Carbon 17,449 32.32 Hydrogen 18,172 33.66 Nitrogen 14,560 26.97 Oxygen 3,813 7.06 Totals 53,994 100.00
Table: 44527 Organism: AedesAedes albopictus
Nucleotide count: 4,211 Invalid Nucleotide Count: 4,826 Atom Count Percent Carbon 19,068 32.11 Hydrogen 20,085 33.82 Nitrogen 16,111 27.13 Oxygen 4,121 6.94 Totals 59,385 100.00
Table: 44528 Organism: Anolis carolinensis
Nucleotide count: 4,080 Invalid Nucleotide Count: 4,957 Atom Count Percent Carbon 18,518 31.81 Hydrogen 19,742 33.92 Nitrogen 15,978 27.45 Oxygen 3,969 6.82 Totals 58,207 100.00
Table: 44529 Organism: Arabidopsis thaliana
Nucleotide count: 3,539 Invalid Nucleotide Count: 5,498 Atom Count Percent Carbon 16,099 32.03 Hydrogen 16,966 33.75 Nitrogen 13,774 27.40 Oxygen 3,427 6.82 Totals 50,266 100.00
Table: 44530 Organism: Caenorhabditis briggsae
Nucleotide count: 3,653 Invalid Nucleotide Count: 5,384 Atom Count Percent Carbon 16,526 32.16 Hydrogen 17,297 33.67 Nitrogen 13,819 26.90 Oxygen 3,737 7.27 Totals 51,379 100.00
Table: 44531 Organism: Caenorhabditis elegans
Nucleotide count: 3,662 Invalid Nucleotide Count: 5,375 Atom Count Percent Carbon 16,568 32.17 Hydrogen 17,337 33.66 Nitrogen 13,853 26.90 Oxygen 3,742 7.27 Totals 51,500 100.00
Table: 44532 Organism: Cryptosporidium hominis
Nucleotide count: 3,527 Invalid Nucleotide Count: 5,510 Atom Count Percent Carbon 16,019 32.47 Hydrogen 16,561 33.57 Nitrogen 13,329 27.02 Oxygen 3,426 6.94 Totals 49,335 100.00
Table: 44533 Organism: Cyanidioschyzon merolae
Nucleotide count: 3,645 Invalid Nucleotide Count: 5,392 Atom Count Percent Carbon 16,598 31.92 Hydrogen 17,577 33.80 Nitrogen 14,323 27.54 Oxygen 3,501 6.73 Totals 51,999 100.00
Table: 44534 Organism: Danio rerio
Nucleotide count: 4,298 Invalid Nucleotide Count: 4,739 Atom Count Percent Carbon 19,484 31.85 Hydrogen 20,725 33.87 Nitrogen 16,713 27.32 Oxygen 4,261 6.96 Totals 61,183 100.00
Table: 44535 Organism: Dictyostelium discoideum
Nucleotide count: 3,903 Invalid Nucleotide Count: 5,134 Atom Count Percent Carbon 17,697 32.30 Hydrogen 18,404 33.59 Nitrogen 14,768 26.95 Oxygen 3,925 7.16 Totals 54,794 100.00
Table: 44536 Organism: Drosophila melanogaster
Nucleotide count: 4,078 Invalid Nucleotide Count: 4,959 Atom Count Percent Carbon 18,486 32.39 Hydrogen 19,191 33.62 Nitrogen 15,383 26.95 Oxygen 4,019 7.04 Totals 57,079 100.00
Table: 44537 Organism: Eremothecium gossypii
Nucleotide count: 3,547 Invalid Nucleotide Count: 5,490 Atom Count Percent Carbon 16,117 32.20 Hydrogen 16,827 33.62 Nitrogen 13,591 27.16 Oxygen 3,514 7.02 Totals 50,049 100.00
Table: 44538 Organism: Gallus gallus
Nucleotide count: 4,725 Invalid Nucleotide Count: 4,312 Atom Count Percent Carbon 21,387 31.75 Hydrogen 22,877 33.96 Nitrogen 18,401 27.31 Oxygen 4,705 6.98 Totals 67,370 100.00
Table: 44539 Organism: Guillardia theta
Nucleotide count: 3,872 Invalid Nucleotide Count: 5,165 Atom Count Percent Carbon 17,545 32.16 Hydrogen 18,374 33.68 Nitrogen 14,744 27.03 Oxygen 3,888 7.13 Totals 54,551 100.00
Table: 44540 Organism: Homo sapiens
Nucleotide count: 5,224 Invalid Nucleotide Count: 3,813 Atom Count Percent Carbon 23,593 31.72 Hydrogen 25,332 34.05 Nitrogen 20,278 27.26 Oxygen 5,184 6.97 Totals 74,387 100.00
Table: 44541 Organism: Latimeria chalumnae
Nucleotide count: 3,904 Invalid Nucleotide Count: 5,133 Atom Count Percent Carbon 17,720 31.94 Hydrogen 18,764 33.83 Nitrogen 15,164 27.34 Oxygen 3,823 6.89 Totals 55,471 100.00
Table: 44542 Organism: Leishmania major
Nucleotide count: 4,087 Invalid Nucleotide Count: 4,950 Atom Count Percent Carbon 18,534 32.12 Hydrogen 19,487 33.77 Nitrogen 15,685 27.18 Oxygen 3,993 6.92 Totals 57,699 100.00
Table: 44543 Organism: Monodelphis domestica
Nucleotide count: 5,116 Invalid Nucleotide Count: 3,921 Atom Count Percent Carbon 23,130 31.77 Hydrogen 24,732 33.97 Nitrogen 19,832 27.24 Oxygen 5,117 7.03 Totals 72,811 100.00
Table: 44544 Organism: Mus musculus
Nucleotide count: 4,899 Invalid Nucleotide Count: 4,138 Atom Count Percent Carbon 22,142 31.78 Hydrogen 23,657 33.96 Nitrogen 18,951 27.20 Oxygen 4,919 7.06 Totals 69,669 100.00
Table: 44545 Organism: Oryza sativa
Nucleotide count: 3,580 Invalid Nucleotide Count: 5,457 Atom Count Percent Carbon 16,265 31.94 Hydrogen 17,259 33.89 Nitrogen 13,989 27.47 Oxygen 3,418 6.71 Totals 50,931 100.00
Table: 44546 Organism: Pan troglodytes
Nucleotide count: 5,005 Invalid Nucleotide Count: 4,032 Atom Count Percent Carbon 22,625 31.85 Hydrogen 24,081 33.89 Nitrogen 19,281 27.14 Oxygen 5,060 7.12 Totals 71,047 100.00
Table: 44547 Organism: Picea glauca
Nucleotide count: 3,575 Invalid Nucleotide Count: 5,462 Atom Count Percent Carbon 16,249 32.24 Hydrogen 16,963 33.65 Nitrogen 13,711 27.20 Oxygen 3,481 6.91 Totals 50,404 100.00
Table: 44548 Organism: Plasmodium falciparum
Nucleotide count: 3,946 Invalid Nucleotide Count: 5,091 Atom Count Percent Carbon 17,807 32.44 Hydrogen 18,462 33.63 Nitrogen 14,616 26.62 Oxygen 4,011 7.31 Totals 54,896 100.00
Table: 44549 Organism: Protopterus aethiopicus
Nucleotide count: 3,373 Invalid Nucleotide Count: 5,664 Atom Count Percent Carbon 15,342 31.99 Hydrogen 16,175 33.73 Nitrogen 13,129 27.38 Oxygen 3,312 6.91 Totals 47,958 100.00
Table: 44550 Organism: Rattus norvegicus
Nucleotide count: 4,943 Invalid Nucleotide Count: 4,094 Atom Count Percent Carbon 22,344 31.76 Hydrogen 23,905 33.98 Nitrogen 19,163 27.24 Oxygen 4,934 7.01 Totals 70,346 100.00
Table: 44551 Organism: Saccharomyces cerevisiae
Nucleotide count: 3,554 Invalid Nucleotide Count: 5,483 Atom Count Percent Carbon 16,159 32.20 Hydrogen 16,857 33.59 Nitrogen 13,635 27.17 Oxygen 3,527 7.03 Totals 50,178 100.00
Table: 44552 Organism: Schizosaccharomyces pombe
Nucleotide count: 3,642 Invalid Nucleotide Count: 5,395 Atom Count Percent Carbon 16,555 32.22 Hydrogen 17,265 33.60 Nitrogen 13,955 27.16 Oxygen 3,602 7.01 Totals 51,377 100.00
Table: 44553 Organism: Tetrahymena thermophila
Nucleotide count: 3,508 Invalid Nucleotide Count: 5,529 Atom Count Percent Carbon 16,038 32.28 Hydrogen 16,697 33.61 Nitrogen 13,693 27.56 Oxygen 3,256 6.55 Totals 49,684 100.00
Table: 44554 Organism: Thalassiosira pseudonana
Nucleotide count: 3,490 Invalid Nucleotide Count: 5,547 Atom Count Percent Carbon 15,843 32.19 Hydrogen 16,575 33.68 Nitrogen 13,361 27.15 Oxygen 3,439 6.99 Totals 49,218 100.00
Table: 44555 Organism: Trypanosoma brucei
Nucleotide count: 4,093 Invalid Nucleotide Count: 4,944 Atom Count Percent Carbon 18,437 32.11 Hydrogen 19,412 33.81 Nitrogen 15,356 26.74 Oxygen 4,218 7.35 Totals 57,423 100.00
Table: 44556 Organism: Xenopus laevis
Nucleotide count: 4,241 Invalid Nucleotide Count: 4,796 Atom Count Percent Carbon 19,236 31.81 Hydrogen 20,510 33.92 Nitrogen 16,572 27.40 Oxygen 4,154 6.87 Totals 60,472 100.00
Table: 44557 Organism: Yarrowia lipolytica
Nucleotide count: 3,339 Invalid Nucleotide Count: 5,698 Atom Count Percent Carbon 15,206 32.19 Hydrogen 15,899 33.66 Nitrogen 12,921 27.35 Oxygen 3,214 6.80 Totals 47,240 100.00
Summary information for above tables: Atom High Percent Entity Low Percent Entity Variation Percent Carbon 32.47 Cryptosporidium 31.72 Homo 0.75 Hydrogen 34.05 Homo 33.55 Methanosphaera 0.51 Nitrogen 27.98 Methanopyrus 26.62 Plasmodium 1.36 Oxygen 7.35 Trypanosoma 6.42 Staphylothermus 0.92
VII. Some Supporting Videos
The previous post in this series is here .
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