Dredd Blog: GC Apdx 6

Monday, October 16, 2023

GC Apdx 6

This is an appendix to: On The Origin Of A Genetic Constant - 2

GenBank Genome
Table: 181
(Apple)
**URL Link:** LC360749.1

**Genome info for LC360749.1**:

LC360749 71915 bp DNA linear PLN 05-JUN-2019 Malus domestica Starking Delicious DNA BAC clone SD-241 O01

**Nucleotide count:** 71,915
Atom	Atom Count	Percent
Carbon	346,519	32.4896
Hydrogen	382,300	35.8445
Nitrogen	265,288	24.8734
Oxygen	72,445	6.7924
Totals	1,066,552	~100.00

GenBank Genome
Table: 182
(Capsicum)
**URL Link:** AX076880.1

**Genome info for AX076880.1**:

AX076880 31491 bp DNA linear PAT 22-FEB-2001 Sequence 1 from Patent WO0107635.

**Nucleotide count:** 31,491
Atom	Atom Count	Percent
Carbon	151,111	32.4503
Hydrogen	166,958	35.8534
Nitrogen	116,258	24.9658
Oxygen	31,342	6.7305
Totals	465,669	~100.00

GenBank Genome
Table: 183
(Capsicum)
**URL Link:** AY702979.1

**Genome info for AY702979.1**:

AY702979 103975 bp DNA linear PLN 16-NOV-2006 Capsicum annuum clone YAC YCA22D8 genomic sequence.

**Nucleotide count:** 103,975
Atom	Atom Count	Percent
Carbon	501,460	32.5311
Hydrogen	553,580	35.9123
Nitrogen	381,930	24.7769
Oxygen	104,508	6.7797
Totals	1,541,478	~100.00

GenBank Genome
Table: 184
(Capsicum)
**URL Link:** KJ619462.1

**Genome info for KJ619462.1**:

KJ619462 156612 bp DNA circular PLN 04-JUN-2014 Capsicum annuum var. glabriusculum chloroplast complete genome.

**Nucleotide count:** 156,612
Atom	Atom Count	Percent
Carbon	753,058	32.4833
Hydrogen	832,403	35.9058
Nitrogen	575,027	24.8039
Oxygen	157,806	6.8070
Totals	2,318,294	~100.00

GenBank Genome
Table: 185
(Capsicum)
**URL Link:** KJ865409.1

**Genome info for KJ865409.1**:

KJ865409 507452 bp DNA circular PLN 30-JUL-2014 Capsicum annuum cultivar CMS line FS4401 mitochondrion complete

**Nucleotide count:** 507,452
Atom	Atom Count	Percent
Carbon	2,424,331	32.3287
Hydrogen	2,677,909	35.7102
Nitrogen	1,889,455	25.1961
Oxygen	507,310	6.7650
Totals	7,499,005	~100.00

GenBank Genome
Table: 186
(Capsicum)
**URL Link:** KJ865410.1

**Genome info for KJ865410.1**:

KJ865410 511530 bp DNA circular PLN 30-JUL-2014 Capsicum annuum cultivar Jeju mitochondrion complete genome.

**Nucleotide count:** 511,530
Atom	Atom Count	Percent
Carbon	2,443,984	32.3291
Hydrogen	2,698,551	35.6965
Nitrogen	1,907,615	25.2340
Oxygen	509,559	6.7405
Totals	7,559,709	~100.00

GenBank Genome
Table: 187
(Clove)
**URL Link:** MN746306.1

**Genome info for MN746306.1**:

MN746306 159370 bp DNA circular PLN 01-APR-2020 Syzygium aromaticum chloroplast complete genome.

**Nucleotide count:** 159,370
Atom	Atom Count	Percent
Carbon	766,900	32.5034
Hydrogen	847,809	35.9326
Nitrogen	584,073	24.7547
Oxygen	160,661	6.8093
Totals	2,359,443	~100.00

GenBank Genome
Table: 188
(Clove)
**URL Link:** ON920513.1

**Genome info for ON920513.1**:

ON920513 159377 bp DNA circular PLN 11-SEP-2022 Syzygium aromaticum chloroplast complete genome.

**Nucleotide count:** 159,377
Atom	Atom Count	Percent
Carbon	766,935	32.5035
Hydrogen	847,850	35.9327
Nitrogen	584,090	24.7543
Oxygen	160,673	6.8095
Totals	2,359,548	~100.00

GenBank Genome
Table: 189
(Clove)
**URL Link:** OL405118.1

**Genome info for OL405118.1**:

OL405118 160699 bp DNA circular PLN 04-OCT-2022 Syzygium aromaticum chloroplast complete genome.

**Nucleotide count:** 160,699
Atom	Atom Count	Percent
Carbon	772,045	32.4679
Hydrogen	853,496	35.8933
Nitrogen	590,592	24.8370
Oxygen	161,739	6.8018
Totals	2,377,872	~100.00

GenBank Genome
Table: 190
(Coriander)
**URL Link:** KR002656.1

**Genome info for KR002656.1**:

KR002656 146519 bp DNA circular PLN 24-MAR-2016 Coriandrum sativum chloroplast complete genome.

**Nucleotide count:** 146,519
Atom	Atom Count	Percent
Carbon	704,734	32.4939
Hydrogen	779,237	35.9291
Nitrogen	536,947	24.7576
Oxygen	147,900	6.8194
Totals	2,168,818	~100.00

GenBank Genome
Table: 191
(Coriander)
**URL Link:** MW477237.1

**Genome info for MW477237.1**:

MW477237 82926 bp DNA circular PLN 23-MAR-2021 Coriandrum sativum mitochondrion chromosome 1 complete genome.

**Nucleotide count:** 82,926
Atom	Atom Count	Percent
Carbon	395,840	32.3216
Hydrogen	437,785	35.7466
Nitrogen	307,585	25.1153
Oxygen	83,481	6.8165
Totals	1,224,691	~100.00

GenBank Genome
Table: 192
(Coriander)
**URL Link:** MW477238.1

**Genome info for MW477238.1**:

MW477238 224590 bp DNA circular PLN 23-MAR-2021 Coriandrum sativum mitochondrion chromosome 2 complete genome.

**Nucleotide count:** 224,590
Atom	Atom Count	Percent
Carbon	1,071,555	32.3139
Hydrogen	1,184,485	35.7194
Nitrogen	835,555	25.1970
Oxygen	224,489	6.7697
Totals	3,316,084	~100.00

GenBank Genome
Table: 193
(Cotton)
**URL Link:** HC207882.1

**Genome info for HC207882.1**:

HC207882 165250 bp DNA linear PAT 11-MAR-2010 Sequence 53 from Patent WO2009143995.

**Nucleotide count:** 164,705
Non-Nucleotide Count: 545
Atom	Atom Count	Percent
Carbon	796,631	32.6143
Hydrogen	879,285	35.9982
Nitrogen	602,457	24.6648
Oxygen	164,206	6.7226
Totals	2,442,579	~100.00

GenBank Genome
Table: 194
(Cotton)
**URL Link:** AY632359.1

**Genome info for AY632359.1**:

AY632359 103930 bp DNA linear PLN 09-JUN-2006 Gossypium hirsutum BAC 155C17 complete sequence.

**Nucleotide count:** 103,930
Atom	Atom Count	Percent
Carbon	502,796	32.6030
Hydrogen	554,825	35.9767
Nitrogen	380,417	24.6675
Oxygen	104,141	6.7528
Totals	1,542,179	~100.00

GenBank Genome
Table: 195
(Cotton)
**URL Link:** AY632360.1

**Genome info for AY632360.1**:

AY632360 135862 bp DNA linear PLN 26-JUL-2016 Gossypium hirsutum BAC 106I22 complete sequence.

**Nucleotide count:** 135,862
Atom	Atom Count	Percent
Carbon	656,577	32.5923
Hydrogen	724,634	35.9707
Nitrogen	497,872	24.7142
Oxygen	135,431	6.7228
Totals	2,014,514	~100.00

GenBank Genome
Table: 196
(Cotton)
**URL Link:** HQ650105.1

**Genome info for HQ650105.1**:

HQ650105 35934 bp DNA linear PLN 05-JUN-2012 Gossypium hirsutum clone BAC 259M16 complete sequence.

**Nucleotide count:** 35,934
Atom	Atom Count	Percent
Carbon	173,555	32.5502
Hydrogen	192,038	36.0167
Nitrogen	130,336	24.4445
Oxygen	37,263	6.9887
Totals	533,192	~100.00

GenBank Genome
Table: 197
(Cotton)
**URL Link:** HQ650106.1

**Genome info for HQ650106.1**:

HQ650106 121433 bp DNA linear PLN 05-JUN-2012 Gossypium hirsutum clone BAC 067L14 complete sequence.

**Nucleotide count:** 121,433
Atom	Atom Count	Percent
Carbon	586,172	32.5843
Hydrogen	648,360	36.0412
Nitrogen	441,594	24.5474
Oxygen	122,815	6.8271
Totals	1,798,941	~100.00

GenBank Genome
Table: 198
(Cucumber)
**URL Link:** LP638829.1

**Genome info for LP638829.1**:

LP638829 11900 bp DNA linear PAT 19-FEB-2016 Sequence 23 from Patent WO2015040098.

**Nucleotide count:** 11,900
Atom	Atom Count	Percent
Carbon	57,792	32.6706
Hydrogen	63,890	36.1179
Nitrogen	42,914	24.2599
Oxygen	12,297	6.9517
Totals	176,893	~100.00

GenBank Genome
Table: 199
(Cucumber)
**URL Link:** AY521596.1

**Genome info for AY521596.1**:

AY521596 16653 bp DNA linear PLN 09-JAN-2005 Cucumis sativus isolate GY-14 chloroplast sequence.

**Nucleotide count:** 16,653
Atom	Atom Count	Percent
Carbon	79,939	32.5144
Hydrogen	88,763	36.1035
Nitrogen	60,119	24.4528
Oxygen	17,036	6.9292
Totals	245,857	~100.00

GenBank Genome
Table: 200
(Cucumber)
**URL Link:** HQ860792.1

**Genome info for HQ860792.1**:

HQ860792 1555935 bp DNA circular PLN 25-JUL-2016 Cucumis sativus cultivar Calypso chromosome 1 complete sequence.

**Nucleotide count:** 1,555,935
Atom	Atom Count	Percent
Carbon	7,435,778	32.3348
Hydrogen	8,213,254	35.7157
Nitrogen	5,791,144	25.1831
Oxygen	1,556,016	6.7664
Totals	22,996,192	~100.00

**Interim Totals For Tables 181-200:**
(Total atom count: 66,007,510)
Atom Type	Atom Type Count	Low	High	Variation	Average
Carbon	21,387,712	32.3139	32.6706	0.3567%	32.4019%
Hydrogen	23,627,412	35.6965	36.1179	0.4214%	35.7950%
Nitrogen	16,521,268	24.2599	25.2340	0.9741%	25.0294%
Oxygen	4,471,118	6.7226	6.9887	0.2661%	6.7737%

GenBank Genome
Table: 201
(Cucumber)
**URL Link:** HQ860793.1

**Genome info for HQ860793.1**:

HQ860793 44840 bp DNA circular PLN 25-JUL-2016 Cucumis sativus cultivar Calypso chromosome 3 complete sequence.

**Nucleotide count:** 44,840
Atom	Atom Count	Percent
Carbon	214,142	32.3351
Hydrogen	236,907	35.7726
Nitrogen	165,963	25.0601
Oxygen	45,247	6.8322
Totals	662,259	~100.00

GenBank Genome
Table: 202
(Cucumber)
**URL Link:** HQ860794.1

**Genome info for HQ860794.1**:

HQ860794 83817 bp DNA circular PLN 25-JUL-2016 Cucumis sativus cultivar Calypso chromosome 2 complete sequence.

**Nucleotide count:** 83,817
Atom	Atom Count	Percent
Carbon	400,793	32.3276
Hydrogen	441,933	35.6460
Nitrogen	313,957	25.3235
Oxygen	83,101	6.7029
Totals	1,239,784	~100.00

GenBank Genome
Table: 203
(Garlic)
**URL Link:** KY363332.1

**Genome info for KY363332.1**:

KY363332 153131 bp DNA circular PLN 08-AUG-2017 Allium sativum chloroplast complete genome.

**Nucleotide count:** 153,131
Atom	Atom Count	Percent
Carbon	737,050	32.5075
Hydrogen	814,672	35.9310
Nitrogen	561,394	24.7602
Oxygen	154,206	6.8012
Totals	2,267,322	~100.00

GenBank Genome
Table: 204
(Garlic)
**URL Link:** KX683282.1

**Genome info for KX683282.1**:

KX683282 153172 bp DNA circular PLN 23-OCT-2016 Allium sativum chloroplast complete genome.

**Nucleotide count:** 153,172
Atom	Atom Count	Percent
Carbon	737,254	32.5076
Hydrogen	814,870	35.9299
Nitrogen	561,618	24.7633
Oxygen	154,199	6.7991
Totals	2,267,941	~100.00

GenBank Genome
Table: 205
(Garlic)
**URL Link:** KY085913.1

**Genome info for KY085913.1**:

KY085913 153118 bp DNA circular PLN 29-APR-2017 Allium sativum plastid complete genome.

**Nucleotide count:** 153,116
Non-Nucleotide Count: 2
Atom	Atom Count	Percent
Carbon	736,983	32.5076
Hydrogen	814,585	35.9306
Nitrogen	561,371	24.7615
Oxygen	154,169	6.8002
Totals	2,267,108	~100.00

GenBank Genome
Table: 206
(Garlic)
**URL Link:** MK335928.1

**Genome info for MK335928.1**:

MK335928 153189 bp DNA circular PLN 28-AUG-2019 Allium sativum cultivar CangShanPuKe chloroplast complete genome.

**Nucleotide count:** 153,189
Atom	Atom Count	Percent
Carbon	737,331	32.5077
Hydrogen	814,968	35.9306
Nitrogen	561,648	24.7621
Oxygen	154,227	6.7996
Totals	2,268,174	~100.00

GenBank Genome
Table: 207
(Lettuce)
**URL Link:** AF072271.1

**Genome info for AF072271.1**:

AF072271 13914 bp DNA linear PLN 10-JAN-1999 Lactuca sativa resistance protein candidate RGC2J RGC2J gene

**Nucleotide count:** 13,914
Atom	Atom Count	Percent
Carbon	67,019	32.5103
Hydrogen	73,889	35.8429
Nitrogen	51,511	24.9875
Oxygen	13,728	6.6593
Totals	206,147	~100.00

GenBank Genome
Table: 208
(Lettuce)
**URL Link:** AF072272.1

**Genome info for AF072272.1**:

AF072272 11988 bp DNA linear PLN 10-JAN-1999 Lactuca sativa resistance protein candidate RGC2K RGC2K gene

**Nucleotide count:** 11,964
Non-Nucleotide Count: 24
Atom	Atom Count	Percent
Carbon	57,917	32.5519
Hydrogen	63,715	35.8106
Nitrogen	44,329	24.9149
Oxygen	11,961	6.7226
Totals	177,922	~100.00

GenBank Genome
Table: 209
(Lettuce)
**URL Link:** KC676791.1

**Genome info for KC676791.1**:

KC676791 156418 bp DNA linear PLN 28-MAY-2013 Lactuca sativa hypothetical protein cysteine-rich RLK

**Nucleotide count:** 156,418
Atom	Atom Count	Percent
Carbon	752,788	32.4926
Hydrogen	831,513	35.8906
Nitrogen	575,217	24.8281
Oxygen	157,282	6.7888
Totals	2,316,800	~100.00

GenBank Genome
Table: 210
(Lettuce)
**URL Link:** DQ383816.1

**Genome info for DQ383816.1**:

DQ383816 152772 bp DNA circular PLN 07-MAR-2014 Lactuca sativa cultivar Salinas chloroplast complete genome.

**Nucleotide count:** 152,772
Atom	Atom Count	Percent
Carbon	735,547	32.4887
Hydrogen	811,800	35.8568
Nitrogen	563,414	24.8857
Oxygen	153,245	6.7688
Totals	2,264,006	~100.00

GenBank Genome
Table: 211
(Lettuce)
**URL Link:** JX485630.1

**Genome info for JX485630.1**:

JX485630 169621 bp DNA linear PLN 28-OCT-2012 Lactuca sativa cultivar Diana flowering locus T FT gene complete

**Nucleotide count:** 169,621
Atom	Atom Count	Percent
Carbon	816,816	32.4672
Hydrogen	900,476	35.7925
Nitrogen	628,414	24.9785
Oxygen	170,116	6.7618
Totals	2,515,822	~100.00

GenBank Genome
Table: 212
(Maize)
**URL Link:** MN905575.1

**Genome info for MN905575.1**:

MN905575 18421 bp DNA circular INV 21-APR-2020 Sitophilus zeamais mitochondrion
complete genome.

**Nucleotide count:** 18,414
Non-Nucleotide Count: 7
Atom	Atom Count	Percent
Carbon	89,219	32.7850
Hydrogen	98,690	36.2652
Nitrogen	66,508	24.4394
Oxygen	17,717	6.5104
Totals	272,134	~100.00

GenBank Genome
Table: 213
(Maize)
**URL Link:** MT294139.1

**Genome info for MT294139.1**:

MT294139 18531 bp DNA circular INV 03-JUN-2020 Sitophilus zeamais mitochondrion
complete genome.

**Nucleotide count:** 18,531
Atom	Atom Count	Percent
Carbon	89,779	32.7857
Hydrogen	99,312	36.2670
Nitrogen	66,932	24.4424
Oxygen	17,813	6.5050
Totals	273,836	~100.00

GenBank Genome
Table: 214
(Maize)
**URL Link:** AY705912.1

**Genome info for AY705912.1**:

AY705912 40000 bp DNA linear PLN 24-NOV-2004 Zea mays cytotype NA hypothetical protein genes complete cds;

**Nucleotide count:** 40,000
Atom	Atom Count	Percent
Carbon	191,308	32.3662
Hydrogen	211,453	35.7744
Nitrogen	148,257	25.0827
Oxygen	40,055	6.7767
Totals	591,073	~100.00

GenBank Genome
Table: 215
(Maize)
**URL Link:** AY883559.2

**Genome info for AY883559.2**:

AY883559 169976 bp DNA linear PLN 15-AUG-2005 Zea mays cultivar inbred line B73 teosinte glume architecture 1

**Nucleotide count:** 168,428
Non-Nucleotide Count: 1,548
Atom	Atom Count	Percent
Carbon	800,672	32.2469
Hydrogen	886,336	35.6970
Nitrogen	626,616	25.2368
Oxygen	169,320	6.8193
Totals	2,482,944	~100.00

GenBank Genome
Table: 216
(Maize)
**URL Link:** KM013688.1

**Genome info for KM013688.1**:

KM013688 14287 bp DNA linear PLN 08-OCT-2014 Zea mays subsp. mays transposon activator Ac element Ac P1 gene

**Nucleotide count:** 14,287
Atom	Atom Count	Percent
Carbon	68,250	32.3085
Hydrogen	75,487	35.7343
Nitrogen	52,909	25.0463
Oxygen	14,599	6.9109
Totals	211,245	~100.00

GenBank Genome
Table: 217
(Mango)
**URL Link:** KY635882.1

**Genome info for KY635882.1**:

KY635882 157780 bp DNA circular PLN 11-JUN-2017 Mangifera indica chloroplast complete genome.

**Nucleotide count:** 157,780
Atom	Atom Count	Percent
Carbon	758,501	32.4800
Hydrogen	838,466	35.9042
Nitrogen	579,404	24.8108
Oxygen	158,918	6.8051
Totals	2,335,289	~100.00

GenBank Genome
Table: 218
(Mango)
**URL Link:** KX871231.1

**Genome info for KX871231.1**:

KX871231 157780 bp DNA circular PLN 13-NOV-2017 Mangifera indica voucher PDBK 2014-0249 chloroplast complete

**Nucleotide count:** 157,780
Atom	Atom Count	Percent
Carbon	758,501	32.4800
Hydrogen	838,466	35.9042
Nitrogen	579,404	24.8108
Oxygen	158,918	6.8051
Totals	2,335,289	~100.00

GenBank Genome
Table: 219
(Mango)
**URL Link:** EF205595.2

**Genome info for EF205595.2**:

EF205595 33021 bp DNA linear PLN 24-JUL-2016 Mangifera indica large single copy region partial sequence; and

**Nucleotide count:** 31,921
Non-Nucleotide Count: 1,100
Atom	Atom Count	Percent
Carbon	153,121	32.3907
Hydrogen	168,874	35.7231
Nitrogen	118,830	25.1369
Oxygen	31,906	6.7493
Totals	472,731	~100.00

GenBank Genome
Table: 220
(Mango)
**URL Link:** MK936539.1

**Genome info for MK936539.1**:

MK936539 34869 bp DNA linear PLN 16-JUL-2019 Mangifera indica polygalacturonase PG40-1 gene complete cds.

**Nucleotide count:** 33,696
Non-Nucleotide Count: 1,173
Atom	Atom Count	Percent
Carbon	162,937	32.6107
Hydrogen	179,958	36.0173
Nitrogen	122,960	24.6096
Oxygen	33,788	6.7624
Totals	499,643	~100.00

**Interim Totals For Tables 201-220:**
(Total atom count: 27,927,469)
Atom Type	Atom Type Count	Low	High	Variation	Average
Carbon	9,065,928	32.2469	32.7857	0.5388%	32.4624%
Hydrogen	10,016,370	35.6460	36.2670	0.6210%	35.8657%
Nitrogen	6,950,656	24.4394	25.3235	0.8841%	24.8882%
Oxygen	1,894,515	6.5050	6.9109	0.4059%	6.7837%

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