Friday, November 10, 2023

GC-8 Appendix LOW

This is an appendix to: On The Origin Of A Genetic Constant - 8


GenBank Genome Files
Low Variations
Analysis Report


after processing 100,000 genomes:

Sample genome HTML tables
showing LOW variation
summaries for this section:



GenBank Genome
Table: 1
(v= <1 [0.0210%])
URL Link: LR862133.1

Genome info for LR862133.1:

LR862133 18411140 bp DNA linear PLN 28-JUL-2020 Ananas comosus var. bracteatus genome assembly
chromosome: 5.

Nucleotide count: 18,405,240
Non-Nucleotide Count: 5,900

Atom Atom Count Percent
Carbon 88,541,178 32.4808
Hydrogen 97,752,075 35.8597
Nitrogen 67,878,531 24.9008
Oxygen 18,424,038 6.7587
Totals 272,595,822 ~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 100,000

variation count:
@ <2.0% = 0

variation count:
@ <3.0% = 0

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0



after processing 200,000 genomes:

Sample genome HTML tables
showing LOW variation
summaries for this section:



GenBank Genome
Table: 100001
(v= <1 [0.0793%])
URL Link: OD565703.1

Genome info for OD565703.1:

OD565703 160245 bp DNA linear INV 11-DEC-2020 4 Tbi b3v08.

Nucleotide count: 154,008
Non-Nucleotide Count: 6,237

Atom Atom Count Percent
Carbon 743,062 32.5406
Hydrogen 819,390 35.8832
Nitrogen 568,034 24.8757
Oxygen 153,003 6.7004
Totals 2,283,489 ~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 100,000

variation count:
@ <2.0% = 0

variation count:
@ <3.0% = 0

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0



after processing 300,000 genomes:

Sample genome HTML tables
showing LOW variation
summaries for this section:



GenBank Genome
Table: 200001
(v= <1 [0.0347%])
URL Link: EA695480.1

Genome info for EA695480.1:

EA695480 14337 bp DNA linear PAT 10-JUN-2008 Sequence 74359 from patent US 7365185.

Nucleotide count: 14,337

Atom Atom Count Percent
Carbon 68,750 32.3906
Hydrogen 75,474 35.5585
Nitrogen 54,448 25.6524
Oxygen 13,581 6.3985
Totals 212,253 ~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 100,000

variation count:
@ <2.0% = 0

variation count:
@ <3.0% = 0

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0



after processing 400,000 genomes:

Sample genome HTML tables
showing LOW variation
summaries for this section:



GenBank Genome
Table: 300001
(v= <1 [0.0991%])
URL Link: MX519141.1

Genome info for MX519141.1:

MX519141 11326 bp DNA linear PAT 28-JUN-2021 Sequence 2781 from patent US 10961585.

Nucleotide count: 11,326

Atom Atom Count Percent
Carbon 53,376 32.0309
Hydrogen 59,147 35.4941
Nitrogen 42,571 25.5468
Oxygen 11,545 6.9282
Totals 166,639 ~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 100,000

variation count:
@ <2.0% = 0

variation count:
@ <3.0% = 0

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0



after processing 500,000 genomes:

Sample genome HTML tables
showing LOW variation
summaries for this section:



GenBank Genome
Table: 400001
(v= <1 [0.0262%])
URL Link: MH064508.1

Genome info for MH064508.1:

MH064508 117444 bp DNA circular PLN 08-JUN-2019 Radula japonica voucher 16-8723 chloroplast complete genome.

Nucleotide count: 117,444

Atom Atom Count Percent
Carbon 569,471 32.6497
Hydrogen 628,230 36.0185
Nitrogen 428,692 24.5783
Oxygen 117,794 6.7535
Totals 1,744,187 ~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 100,000

variation count:
@ <2.0% = 0

variation count:
@ <3.0% = 0

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0



after processing 600,000 genomes:

Sample genome HTML tables
showing LOW variation
summaries for this section:



GenBank Genome
Table: 500001
(v= <1 [0.0214%])
URL Link: AC133204.3

Genome info for AC133204.3:

AC133204 224181 bp DNA linear ROD 25-NOV-2003 Mus musculus BAC clone RP23-106N3 from chromosome 5 complete

Nucleotide count: 224,181

Atom Atom Count Percent
Carbon 1,071,062 32.3550
Hydrogen 1,178,966 35.6146
Nitrogen 847,036 25.5875
Oxygen 213,284 6.4429
Totals 3,310,348 ~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 100,000

variation count:
@ <2.0% = 0

variation count:
@ <3.0% = 0

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0



after processing 700,000 genomes:

Sample genome HTML tables
showing LOW variation
summaries for this section:



GenBank Genome
Table: 600001
(v= <1 [0.0841%])
URL Link: JX684087.1

Genome info for JX684087.1:

JX684087 41468 bp DNA linear ENV 26-APR-2013 Uncultured organism clone FLSS-21 genomic sequence.

Nucleotide count: 41,468

Atom Atom Count Percent
Carbon 195,141 32.0406
Hydrogen 215,920 35.4524
Nitrogen 157,202 25.8114
Oxygen 40,779 6.6956
Totals 609,042 ~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 100,000

variation count:
@ <2.0% = 0

variation count:
@ <3.0% = 0

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0



after processing 800,000 genomes:

Sample genome HTML tables
showing LOW variation
summaries for this section:



GenBank Genome
Table: 700001
(v= <1 [0.0457%])
URL Link: CP014211.1

Genome info for CP014211.1:

CP014211 4106512 bp DNA circular BCT 17-DEC-2019 Bordetella pertussis strain J377 chromosome complete genome.

Nucleotide count: 4,106,512

Atom Atom Count Percent
Carbon 19,140,791 31.7939
Hydrogen 21,196,927 35.2093
Nitrogen 15,755,921 26.1715
Oxygen 4,109,066 6.8254
Totals 60,202,705 ~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 100,000

variation count:
@ <2.0% = 0

variation count:
@ <3.0% = 0

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0



after processing 900,000 genomes:

Sample genome HTML tables
showing LOW variation
summaries for this section:



GenBank Genome
Table: 800001
(v= <1 [0.0426%])
URL Link: CP057830.1

Genome info for CP057830.1:

CP057830 61278 bp DNA circular BCT 13-MAY-2022 Escherichia coli strain RHB13-C18 plasmid pRHB13-C18 2 complete

Nucleotide count: 61,278

Atom Atom Count Percent
Carbon 291,362 32.2487
Hydrogen 322,125 35.6536
Nitrogen 229,129 25.3606
Oxygen 60,869 6.7371
Totals 903,485 ~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 100,000

variation count:
@ <2.0% = 0

variation count:
@ <3.0% = 0

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0



after processing 1,000,000 genomes:

Sample genome HTML tables
showing LOW variation
summaries for this section:



GenBank Genome
Table: 900001
(v= <1 [0.0212%])
URL Link: AC016793.3

Genome info for AC016793.3:

AC016793 96138 bp DNA linear HTG 15-DEC-1999 Drosophila melanogaster strain y chromosome 2 clone BACR33K22

Nucleotide count: 91,171
Non-Nucleotide Count: 4,967

Atom Atom Count Percent
Carbon 435,426 32.3266
Hydrogen 481,317 35.7336
Nitrogen 338,611 25.1389
Oxygen 91,606 6.8009
Totals 1,346,960 ~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 100,000

variation count:
@ <2.0% = 0

variation count:
@ <3.0% = 0

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0



Total processed 1,052,789 genomes:


Variation totals for all sections:

variation count:
@ <1.0% = 1,052,789
(100.0000%)

variation count:
@ <2.0% = 0
(0.0000%)

variation count:
@ <3.0% = 0
(0.0000%)

variation count:
@ <4.0% = 0
(0.0000%)

variation count:
@ >=4.0% = 0
(0.0000%)




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