Friday, November 10, 2023

GC-8 Appendix AVG

This is an appendix to: On The Origin Of A Genetic Constant - 8


GenBank Genome Files
Average Variations
Analysis Report


after processing 100,000 genomes:

Sample genome HTML tables
showing AVG variation
summaries for this section:



GenBank Genome
Table: 500001
(v= <1 [0.1684%])
URL Link: AC133204.3

Genome info for AC133204.3:

AC133204 224181 bp DNA linear ROD 25-NOV-2003 Mus musculus BAC clone RP23-106N3 from chromosome 5 complete

Nucleotide count: 224,181

Atom Atom Count Percent
Carbon 1,071,062 32.3550
Hydrogen 1,178,966 35.6146
Nitrogen 847,036 25.5875
Oxygen 213,284 6.4429
Totals 3,310,348 ~100.00





GenBank Genome
Table: 1
(v= <1 [0.2719%])
URL Link: LR862133.1

Genome info for LR862133.1:

LR862133 18411140 bp DNA linear PLN 28-JUL-2020 Ananas comosus var. bracteatus genome assembly
chromosome: 5.

Nucleotide count: 18,405,240
Non-Nucleotide Count: 5,900

Atom Atom Count Percent
Carbon 88,541,178 32.4808
Hydrogen 97,752,075 35.8597
Nitrogen 67,878,531 24.9008
Oxygen 18,424,038 6.7587
Totals 272,595,822 ~100.00





GenBank Genome
Table: 6234
(v= >1 <2 [1.0785%])
URL Link: LR905064.1

Genome info for LR905064.1:

LR905064 14426 bp DNA linear INV 24-NOV-2020 Darwinula stevensoni.

Nucleotide count: 14,426

Atom Atom Count Percent
Carbon 69,819 32.7286
Hydrogen 78,088 36.6048
Nitrogen 49,634 23.2666
Oxygen 15,786 7.3999
Totals 213,327 ~100.00





GenBank Genome
Table: 92511
(v= >2 <3 [2.3246%])
URL Link: MK361035.1

Genome info for MK361035.1:

MK361035 10487 bp DNA circular INV 25-NOV-2019 Beroe cucumis mitochondrion
complete genome.

Nucleotide count: 10,487

Atom Atom Count Percent
Carbon 51,400 32.9194
Hydrogen 58,411 37.4096
Nitrogen 32,437 20.7744
Oxygen 13,891 8.8966
Totals 156,139 ~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 99,560

variation count:
@ <2.0% = 439

variation count:
@ <3.0% = 1

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0



after processing 200,000 genomes:

Sample genome HTML tables
showing AVG variation
summaries for this section:



GenBank Genome
Table: 100001
(v= <1 [0.3136%])
URL Link: OD565703.1

Genome info for OD565703.1:

OD565703 160245 bp DNA linear INV 11-DEC-2020 4 Tbi b3v08.

Nucleotide count: 154,008
Non-Nucleotide Count: 6,237

Atom Atom Count Percent
Carbon 743,062 32.5406
Hydrogen 819,390 35.8832
Nitrogen 568,034 24.8757
Oxygen 153,003 6.7004
Totals 2,283,489 ~100.00





GenBank Genome
Table: 103116
(v= >1 <2 [1.1441%])
URL Link: OC917970.1

Genome info for OC917970.1:

OC917970 11508 bp DNA linear INV 25-JAN-2021 Oppiella nova.

Nucleotide count: 11,508

Atom Atom Count Percent
Carbon 55,876 32.6699
Hydrogen 62,421 36.4967
Nitrogen 39,569 23.1354
Oxygen 13,166 7.6980
Totals 171,032 ~100.00





GenBank Genome
Table: 105813
(v= >2 <3 [2.2322%])
URL Link: MZ636522.1

Genome info for MZ636522.1:

MZ636522 13647 bp DNA circular INV 31-AUG-2022 Dipetalonema gracile mitochondrion
complete genome.

Nucleotide count: 13,647

Atom Atom Count Percent
Carbon 67,325 32.7518
Hydrogen 76,012 36.9778
Nitrogen 43,084 20.9592
Oxygen 19,140 9.3111
Totals 205,561 ~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 96,781

variation count:
@ <2.0% = 3,211

variation count:
@ <3.0% = 8

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0



after processing 300,000 genomes:

Sample genome HTML tables
showing AVG variation
summaries for this section:



GenBank Genome
Table: 200001
(v= <1 [0.2079%])
URL Link: EA695480.1

Genome info for EA695480.1:

EA695480 14337 bp DNA linear PAT 10-JUN-2008 Sequence 74359 from patent US 7365185.

Nucleotide count: 14,337

Atom Atom Count Percent
Carbon 68,750 32.3906
Hydrogen 75,474 35.5585
Nitrogen 54,448 25.6524
Oxygen 13,581 6.3985
Totals 212,253 ~100.00





GenBank Genome
Table: 202972
(v= >1 <2 [1.0673%])
URL Link: EA740987.1

Genome info for EA740987.1:

EA740987 10907 bp DNA linear PAT 10-JUN-2008 Sequence 12433 from patent US 7368527.

Nucleotide count: 10,907

Atom Atom Count Percent
Carbon 52,319 32.3758
Hydrogen 58,691 36.3189
Nitrogen 37,635 23.2891
Oxygen 12,954 8.0161
Totals 161,599 ~100.00





GenBank Genome
Table: 235994
(v= >2 <3 [2.0835%])
URL Link: FV536683.1

Genome info for FV536683.1:

FV536683 10359 bp DNA linear PAT 18-MAR-2010 Modified Microbial Nucleic Acid.

Nucleotide count: 10,359

Atom Atom Count Percent
Carbon 51,795 32.8822
Hydrogen 57,899 36.7573
Nitrogen 33,483 21.2568
Oxygen 14,340 9.1038
Totals 157,517 ~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 99,021

variation count:
@ <2.0% = 975

variation count:
@ <3.0% = 4

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0



after processing 400,000 genomes:

Sample genome HTML tables
showing AVG variation
summaries for this section:



GenBank Genome
Table: 300001
(v= <1 [0.1358%])
URL Link: MX519141.1

Genome info for MX519141.1:

MX519141 11326 bp DNA linear PAT 28-JUN-2021 Sequence 2781 from patent US 10961585.

Nucleotide count: 11,326

Atom Atom Count Percent
Carbon 53,376 32.0309
Hydrogen 59,147 35.4941
Nitrogen 42,571 25.5468
Oxygen 11,545 6.9282
Totals 166,639 ~100.00





GenBank Genome
Table: 301529
(v= >1 <2 [1.2606%])
URL Link: MI279662.1

Genome info for MI279662.1:

MI279662 11127 bp DNA linear PAT 12-FEB-2018 Sequence 21784 from patent US 9827332.

Nucleotide count: 11,127

Atom Atom Count Percent
Carbon 52,077 31.7514
Hydrogen 56,530 34.4664
Nitrogen 45,834 27.9450
Oxygen 9,574 5.8373
Totals 164,015 ~100.00





GenBank Genome
Table: 317731
(v= >3 <4 [3.1228%])
URL Link: MQ014117.1

Genome info for MQ014117.1:

MQ014117 22500 bp DNA linear PAT 18-MAY-2021 Sequence 23 from Patent EP3717009.

Nucleotide count: 22,500

Atom Atom Count Percent
Carbon 108,000 32.8767
Hydrogen 126,000 38.3562
Nitrogen 63,000 19.1781
Oxygen 31,500 9.5890
Totals 328,500 ~100.00





GenBank Genome
Table: 374519
(v= >2 <3 [2.4758%])
URL Link: AP015624.1

Genome info for AP015624.1:

AP015624 19638 bp DNA linear PLN 03-DEC-2015 Vigna angularis var. angularis DNA scaffold: Scaffold 0580

Nucleotide count: 19,638

Atom Atom Count Percent
Carbon 94,239 31.7826
Hydrogen 98,264 33.1401
Nitrogen 90,066 30.3753
Oxygen 13,942 4.7020
Totals 296,511 ~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 99,401

variation count:
@ <2.0% = 595

variation count:
@ <3.0% = 3

variation count:
@ <4.0% = 1

variation count:
@ >=4.0% = 0



after processing 500,000 genomes:

Sample genome HTML tables
showing AVG variation
summaries for this section:



GenBank Genome
Table: 400001
(v= <1 [0.4358%])
URL Link: MH064508.1

Genome info for MH064508.1:

MH064508 117444 bp DNA circular PLN 08-JUN-2019 Radula japonica voucher 16-8723 chloroplast complete genome.

Nucleotide count: 117,444

Atom Atom Count Percent
Carbon 569,471 32.6497
Hydrogen 628,230 36.0185
Nitrogen 428,692 24.5783
Oxygen 117,794 6.7535
Totals 1,744,187 ~100.00





GenBank Genome
Table: 403520
(v= >1 <2 [1.2166%])
URL Link: MZ748319.1

Genome info for MZ748319.1:

MZ748319 19912 bp DNA circular PLN 23-MAR-2022 Galdieria sp. strain ACUF 613 mitochondrion complete genome.

Nucleotide count: 19,912

Atom Atom Count Percent
Carbon 98,326 32.3620
Hydrogen 103,872 34.1873
Nitrogen 84,156 27.6982
Oxygen 17,478 5.7525
Totals 303,832 ~100.00





GenBank Genome
Table: 420094
(v= >2 <3 [2.0278%])
URL Link: MN366148.1

Genome info for MN366148.1:

MN366148 10410 bp DNA linear PLN 10-FEB-2021 UNVERIFIED: Phalaenopsis aphrodite subsp. formosana clone Contig 17

Nucleotide count: 10,410

Atom Atom Count Percent
Carbon 48,410 32.3419
Hydrogen 56,312 37.6211
Nitrogen 31,984 21.3680
Oxygen 12,976 8.6690
Totals 149,682 ~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 99,890

variation count:
@ <2.0% = 109

variation count:
@ <3.0% = 1

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0



after processing 600,000 genomes:

Sample genome HTML tables
showing AVG variation
summaries for this section:



GenBank Genome
Table: 500001
(v= <1 [0.1684%])
URL Link: AC133204.3

Genome info for AC133204.3:

AC133204 224181 bp DNA linear ROD 25-NOV-2003 Mus musculus BAC clone RP23-106N3 from chromosome 5 complete

Nucleotide count: 224,181

Atom Atom Count Percent
Carbon 1,071,062 32.3550
Hydrogen 1,178,966 35.6146
Nitrogen 847,036 25.5875
Oxygen 213,284 6.4429
Totals 3,310,348 ~100.00





GenBank Genome
Table: 516503
(v= >2 <3 [2.2540%])
URL Link: MF597730.1

Genome info for MF597730.1:

MF597730 10830 bp DNA linear ROD 04-AUG-2017 Mus musculus chromosome X WGS contig MG104 gap closure genomic

Nucleotide count: 10,830

Atom Atom Count Percent
Carbon 52,672 31.9918
Hydrogen 54,788 33.2770
Nitrogen 49,280 29.9316
Oxygen 7,902 4.7995
Totals 164,642 ~100.00





GenBank Genome
Table: 534038
(v= >1 <2 [1.0598%])
URL Link: AC140396.3

Genome info for AC140396.3:

AC140396 109575 bp DNA linear ROD 29-MAY-2004 Mus musculus BAC clone RP24-184N24 from chromosome Y complete

Nucleotide count: 109,575

Atom Atom Count Percent
Carbon 530,504 32.4881
Hydrogen 570,549 34.9405
Nitrogen 445,111 27.2586
Oxygen 86,754 5.3128
Totals 1,632,918 ~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 99,957

variation count:
@ <2.0% = 40

variation count:
@ <3.0% = 3

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0



after processing 700,000 genomes:

Sample genome HTML tables
showing AVG variation
summaries for this section:



GenBank Genome
Table: 600001
(v= <1 [0.1939%])
URL Link: JX684087.1

Genome info for JX684087.1:

JX684087 41468 bp DNA linear ENV 26-APR-2013 Uncultured organism clone FLSS-21 genomic sequence.

Nucleotide count: 41,468

Atom Atom Count Percent
Carbon 195,141 32.0406
Hydrogen 215,920 35.4524
Nitrogen 157,202 25.8114
Oxygen 40,779 6.6956
Totals 609,042 ~100.00





GenBank Genome
Table: 600781
(v= >1 <2 [1.1010%])
URL Link: CP021571.1

Genome info for CP021571.1:

CP021571 11301 bp DNA circular ENV 08-JAN-2019 Unidentified plasmid plasmid MO1-2 2829 complete sequence.

Nucleotide count: 11,301

Atom Atom Count Percent
Carbon 54,070 32.5637
Hydrogen 60,864 36.6553
Nitrogen 38,558 23.2216
Oxygen 12,552 7.5594
Totals 166,044 ~100.00





GenBank Genome
Table: 613004
(v= >2 <3 [2.0099%])
URL Link: JQ316200.1

Genome info for JQ316200.1:

JQ316200 13641 bp DNA circular INV 24-MAR-2012 Wuchereria bancrofti mitochondrion complete genome.

Nucleotide count: 13,592
Non-Nucleotide Count: 49

Atom Atom Count Percent
Carbon 66,986 32.7725
Hydrogen 75,381 36.8797
Nitrogen 43,749 21.4039
Oxygen 18,281 8.9439
Totals 204,397 ~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 98,240

variation count:
@ <2.0% = 1,725

variation count:
@ <3.0% = 35

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0



after processing 800,000 genomes:

Sample genome HTML tables
showing AVG variation
summaries for this section:



GenBank Genome
Table: 700001
(v= <1 [0.3967%])
URL Link: CP014211.1

Genome info for CP014211.1:

CP014211 4106512 bp DNA circular BCT 17-DEC-2019 Bordetella pertussis strain J377 chromosome complete genome.

Nucleotide count: 4,106,512

Atom Atom Count Percent
Carbon 19,140,791 31.7939
Hydrogen 21,196,927 35.2093
Nitrogen 15,755,921 26.1715
Oxygen 4,109,066 6.8254
Totals 60,202,705 ~100.00





GenBank Genome
Table: 700621
(v= >1 <2 [1.0848%])
URL Link: CP009334.1

Genome info for CP009334.1:

CP009334 349601 bp DNA circular BCT 26-JUL-2016 Bacillus thuringiensis strain HD1011 plasmid 2 complete sequence.

Nucleotide count: 349,601

Atom Atom Count Percent
Carbon 1,677,817 32.5787
Hydrogen 1,884,682 36.5954
Nitrogen 1,197,598 23.2541
Oxygen 389,952 7.5718
Totals 5,150,049 ~100.00





GenBank Genome
Table: 786399
(v >=4 [4.3408%])
URL Link: CP045289.2

Genome info for CP045289.2:

CP045289 25142 bp DNA circular BCT 06-MAR-2020 Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990

Nucleotide count: 25,142

Atom Atom Count Percent
Carbon 118,003 32.5860
Hydrogen 142,266 39.2861
Nitrogen 60,628 16.7421
Oxygen 41,231 11.3858
Totals 362,128 ~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 99,913

variation count:
@ <2.0% = 86

variation count:
@ <3.0% = 0

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 1



after processing 900,000 genomes:

Sample genome HTML tables
showing AVG variation
summaries for this section:



GenBank Genome
Table: 800001
(v= <1 [0.0528%])
URL Link: CP057830.1

Genome info for CP057830.1:

CP057830 61278 bp DNA circular BCT 13-MAY-2022 Escherichia coli strain RHB13-C18 plasmid pRHB13-C18 2 complete

Nucleotide count: 61,278

Atom Atom Count Percent
Carbon 291,362 32.2487
Hydrogen 322,125 35.6536
Nitrogen 229,129 25.3606
Oxygen 60,869 6.7371
Totals 903,485 ~100.00





GenBank Genome
Table: 800233
(v= >1 <2 [1.0316%])
URL Link: CP051757.1

Genome info for CP051757.1:

CP051757 20671 bp DNA circular BCT 01-DEC-2020 Sarcina sp. JB2 plasmid p3 complete sequence.

Nucleotide count: 20,671

Atom Atom Count Percent
Carbon 100,807 32.8231
Hydrogen 112,193 36.5304
Nitrogen 71,745 23.3604
Oxygen 22,377 7.2860
Totals 307,122 ~100.00





GenBank Genome
Table: 819779
(v= >2 <3 [2.3151%])
URL Link: CP095532.1

Genome info for CP095532.1:

CP095532 14577 bp DNA linear BCT 05-DEC-2022 Escherichia coli strain GN06156 plasmid unnamed1.

Nucleotide count: 14,577

Atom Atom Count Percent
Carbon 71,294 32.5927
Hydrogen 80,958 37.0107
Nitrogen 45,484 20.7934
Oxygen 21,006 9.6031
Totals 218,742 ~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 99,821

variation count:
@ <2.0% = 178

variation count:
@ <3.0% = 1

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0



after processing 1,000,000 genomes:

Sample genome HTML tables
showing AVG variation
summaries for this section:



GenBank Genome
Table: 900001
(v= <1 [0.1424%])
URL Link: AC016793.3

Genome info for AC016793.3:

AC016793 96138 bp DNA linear HTG 15-DEC-1999 Drosophila melanogaster strain y chromosome 2 clone BACR33K22

Nucleotide count: 91,171
Non-Nucleotide Count: 4,967

Atom Atom Count Percent
Carbon 435,426 32.3266
Hydrogen 481,317 35.7336
Nitrogen 338,611 25.1389
Oxygen 91,606 6.8009
Totals 1,346,960 ~100.00





GenBank Genome
Table: 901169
(v= >1 <2 [1.1137%])
URL Link: AC019006.3

Genome info for AC019006.3:

AC019006 149651 bp DNA linear HTG 16-MAR-2000 Homo sapiens chromosome 8 clone RP11-458N4 map 8 WORKING DRAFT

Nucleotide count: 148,150
Non-Nucleotide Count: 1,501

Atom Atom Count Percent
Carbon 724,599 32.4130
Hydrogen 772,412 34.5518
Nitrogen 613,462 27.4416
Oxygen 125,045 5.5936
Totals 2,235,518 ~100.00





GenBank Genome
Table: 918032
(v= >2 <3 [2.0842%])
URL Link: AC027353.4

Genome info for AC027353.4:

AC027353 101509 bp DNA linear HTG 26-SEP-2000 Homo sapiens chromosome 16 clone RP11-167D21 WORKING DRAFT

Nucleotide count: 71,328
Non-Nucleotide Count: 30,181

Atom Atom Count Percent
Carbon 349,107 32.2159
Hydrogen 363,652 33.5581
Nitrogen 320,538 29.5795
Oxygen 50,351 4.6464
Totals 1,083,648 ~100.00





GenBank Genome
Table: 994274
(v= >3 <4 [3.0781%])
URL Link: LN006378.1

Genome info for LN006378.1:

LN006378 14473 bp DNA linear INV 07-OCT-2014 Spirometra erinaceieuropaei genome assembly S erinaceieuropaei

Nucleotide count: 11,935
Non-Nucleotide Count: 2,538

Atom Atom Count Percent
Carbon 54,428 32.2485
Hydrogen 65,229 38.6480
Nitrogen 32,519 19.2674
Oxygen 16,601 9.8361
Totals 168,777 ~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 99,924

variation count:
@ <2.0% = 72

variation count:
@ <3.0% = 3

variation count:
@ <4.0% = 1

variation count:
@ >=4.0% = 0



Total processed 1,052,789 genomes:


Variation totals for all sections:

variation count:
@ <1.0% = 1,045,196
(99.2788%)

variation count:
@ <2.0% = 7,529
(0.7151%)

variation count:
@ <3.0% = 61
(0.0058%)

variation count:
@ <4.0% = 2
(0.0002%)

variation count:
@ >=4.0% = 1
(0.0001%)




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