Friday, March 31, 2023

Appendix Codon Counts

This is an appendix to: MetaSUB - 2


MetaSUB NCBI Data:
#SRR10002674
Nucleotide Count:
1,398,542,068
Codon Codon count
GCT 20,601,535
GCC 30,717,504
GCA 22,022,390
GCG 23,015,619
GCU 0
TGT 18,484,482
TGC 900,259
UGU 0
UGC 0
GAT 21,291,222
GAC 20,631,498
GAU 0
GAA 26,897,263
GAG 11,919,940
TTT 11,821,190
TTC 15,929,347
UUU 0
UUC 0
GGT 14,941,177
GGC 1,391,642
GGA 2,528,476
GGG 2,850,034
GGU 0
CAT 8,903,083
CAC 9,558,813
CAU 0
ATT 3,530,424
ATC 7,768,468
ATA 7,845,495
AUU 0
AUC 0
AUA 0
AAA 9,802,443
AAG 3,077,711
CTT 3,166,297
CTC 9,813,049
CTA 3,800,828
CTG 2,154,718
TTA 2,203,181
TTG 1,047,017
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 1,297,913
AUG 0
AAT 1,286,593
AAC 4,395,242
AAU 0
CCT 1,955,185
CCC 4,403,810
CCA 3,143,352
CCG 3,000,179
CCU 0
CAA 1,866,737
CAG 2,882,517
CGT 6,038,113
CGC 680,128
CGA 1,389,257
CGG 1,430,263
AGA 810,548
AGG 2,493,359
CGU 0
TCT 1,011,108
TCC 1,354,194
TCA 2,512,204
TCG 2,892,033
AGT 2,761,290
AGC 301,737
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 941,142
ACC 1,326,828
ACA 2,374,656
ACG 742,390
ACU 0
GTT 686,205
GTC 2,383,146
GTA 3,414,124
GTG 1,023,298
GUU 0
GUC 0
GUA 0
GUG 0
TGG 815,387
UGG 0
TAT 574,924
TAC 754,871
UAU 0
UAC 0
TAA 758,835
TAG 439,053
TGA 645,978
UAA 0
UAG 0
UGA 0
UGA 0

MetaSUB NCBI Data:
#SRR10002698
Nucleotide Count:
1,254,678,932
Codon Codon count
GCT 19,972,727
GCC 28,357,132
GCA 22,283,040
GCG 17,244,367
GCU 0
TGT 15,891,012
TGC 834,693
UGU 0
UGC 0
GAT 17,462,379
GAC 16,133,325
GAU 0
GAA 22,266,867
GAG 10,602,203
TTT 13,267,141
TTC 12,940,092
UUU 0
UUC 0
GGT 13,221,626
GGC 1,338,467
GGA 2,324,294
GGG 3,075,868
GGU 0
CAT 8,830,940
CAC 10,148,922
CAU 0
ATT 3,704,915
ATC 5,985,920
ATA 6,949,914
AUU 0
AUC 0
AUA 0
AAA 10,248,201
AAG 3,220,510
CTT 3,373,485
CTC 9,337,047
CTA 3,983,329
CTG 2,353,355
TTA 2,266,295
TTG 1,032,706
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 1,729,977
AUG 0
AAT 1,315,818
AAC 4,287,610
AAU 0
CCT 2,204,902
CCC 4,904,443
CCA 3,320,083
CCG 2,630,432
CCU 0
CAA 1,862,491
CAG 3,186,720
CGT 3,686,183
CGC 601,213
CGA 938,929
CGG 1,168,097
AGA 798,965
AGG 1,497,809
CGU 0
TCT 1,041,454
TCC 1,245,864
TCA 1,173,241
TCG 1,541,387
AGT 2,706,030
AGC 267,483
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 1,026,067
ACC 1,243,514
ACA 1,230,541
ACG 586,395
ACU 0
GTT 644,630
GTC 1,526,768
GTA 1,964,912
GTG 1,066,591
GUU 0
GUC 0
GUA 0
GUG 0
TGG 892,253
UGG 0
TAT 557,817
TAC 675,679
UAU 0
UAC 0
TAA 807,586
TAG 474,851
TGA 655,263
UAA 0
UAG 0
UGA 0
UGA 0



Codon Codon count
GCT 471,835
GCC 849,621
GCA 750,445
GCG 1,036,106
GCU 0
TGT 475,436
TGC 27,868
UGU 0
UGC 0
GAT 390,474
GAC 423,955
GAU 0
GAA 1,021,131
GAG 262,619
TTT 252,698
TTC 184,526
UUU 0
UUC 0
GGT 494,698
GGC 46,239
GGA 87,123
GGG 228,626
GGU 0
CAT 31,145
CAC 57,177
CAU 0
ATT 155,419
ATC 142,066
ATA 159,318
AUU 0
AUC 0
AUA 0
AAA 396,526
AAG 118,311
CTT 47,512
CTC 175,724
CTA 104,847
CTG 93,007
TTA 127,588
TTG 5,791
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 135,196
AUG 0
AAT 50,364
AAC 112,166
AAU 0
CCT 65,528
CCC 51,477
CCA 90,338
CCG 183,737
CCU 0
CAA 28,563
CAG 50,524
CGT 297,882
CGC 3,177
CGA 12,433
CGG 13,412
AGA 12,481
AGG 64,811
CGU 0
TCT 45,850
TCC 39,128
TCA 8,029
TCG 48,250
AGT 44,194
AGC 6,380
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 3,222
ACC 9,654
ACA 2,531
ACG 21,439
ACU 0
GTT 33,173
GTC 9,740
GTA 156,898
GTG 5,643
GUU 0
GUC 0
GUA 0
GUG 0
TGG 36,693
UGG 0
TAT 11,192
TAC 1,952
UAU 0
UAC 0
TAA 73,710
TAG 26,826
TGA 3,280
UAA 0
UAG 0
UGA 0
UGA 0



Codon Codon count
GCT 389,081
GCC 689,280
GCA 623,707
GCG 904,396
GCU 0
TGT 437,557
TGC 19,046
UGU 0
UGC 0
GAT 354,030
GAC 363,591
GAU 0
GAA 854,598
GAG 211,671
TTT 195,278
TTC 163,839
UUU 0
UUC 0
GGT 437,732
GGC 32,159
GGA 69,527
GGG 208,258
GGU 0
CAT 24,907
CAC 45,719
CAU 0
ATT 146,580
ATC 112,113
ATA 139,177
AUU 0
AUC 0
AUA 0
AAA 346,628
AAG 98,246
CTT 41,693
CTC 138,177
CTA 116,403
CTG 71,849
TTA 97,729
TTG 3,413
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 115,805
AUG 0
AAT 41,498
AAC 96,024
AAU 0
CCT 58,137
CCC 47,706
CCA 62,585
CCG 160,390
CCU 0
CAA 17,804
CAG 40,335
CGT 298,842
CGC 4,616
CGA 10,325
CGG 12,345
AGA 10,487
AGG 63,203
CGU 0
TCT 36,282
TCC 20,489
TCA 5,760
TCG 38,192
AGT 43,049
AGC 6,528
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 2,807
ACC 8,865
ACA 2,311
ACG 19,820
ACU 0
GTT 24,293
GTC 11,196
GTA 130,980
GTG 3,405
GUU 0
GUC 0
GUA 0
GUG 0
TGG 26,538
UGG 0
TAT 8,653
TAC 1,562
UAU 0
UAC 0
TAA 56,570
TAG 23,266
TGA 4,893
UAA 0
UAG 0
UGA 0
UGA 0



Codon Codon count
GCT 19,788,752
GCC 35,022,221
GCA 20,121,561
GCG 25,850,147
GCU 0
TGT 10,437,717
TGC 1,047,358
UGU 0
UGC 0
GAT 14,189,376
GAC 19,110,142
GAU 0
GAA 15,694,876
GAG 9,283,539
TTT 7,530,624
TTC 9,873,464
UUU 0
UUC 0
GGT 13,891,401
GGC 2,053,679
GGA 2,116,504
GGG 2,834,830
GGU 0
CAT 6,192,057
CAC 8,873,573
CAU 0
ATT 2,091,785
ATC 4,695,880
ATA 3,644,313
AUU 0
AUC 0
AUA 0
AAA 5,363,184
AAG 2,170,159
CTT 2,243,485
CTC 8,246,629
CTA 2,587,516
CTG 1,930,510
TTA 1,345,714
TTG 810,527
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 919,074
AUG 0
AAT 812,221
AAC 3,387,304
AAU 0
CCT 1,833,163
CCC 5,049,996
CCA 2,655,187
CCG 3,646,814
CCU 0
CAA 1,296,139
CAG 2,315,969
CGT 5,805,824
CGC 1,049,147
CGA 1,683,612
CGG 1,851,661
AGA 505,832
AGG 1,021,504
CGU 0
TCT 676,193
TCC 1,293,086
TCA 811,903
TCG 1,709,409
AGT 1,822,457
AGC 340,899
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 645,038
ACC 1,301,621
ACA 740,688
ACG 782,116
ACU 0
GTT 554,615
GTC 2,030,120
GTA 1,334,009
GTG 1,043,534
GUU 0
GUC 0
GUA 0
GUG 0
TGG 674,344
UGG 0
TAT 337,395
TAC 592,872
UAU 0
UAC 0
TAA 433,801
TAG 294,705
TGA 439,066
UAA 0
UAG 0
UGA 0
UGA 0

MetaSUB NCBI Data:
#SRR10153700
Nucleotide Count:
24,829,750
Codon Codon count
GCT 349,991
GCC 572,886
GCA 484,625
GCG 724,257
GCU 0
TGT 309,304
TGC 23,379
UGU 0
UGC 0
GAT 283,026
GAC 285,268
GAU 0
GAA 667,315
GAG 163,958
TTT 168,251
TTC 145,472
UUU 0
UUC 0
GGT 329,518
GGC 34,547
GGA 56,740
GGG 174,269
GGU 0
CAT 26,472
CAC 32,629
CAU 0
ATT 106,397
ATC 88,104
ATA 105,239
AUU 0
AUC 0
AUA 0
AAA 259,830
AAG 79,797
CTT 35,513
CTC 96,999
CTA 66,865
CTG 59,268
TTA 69,779
TTG 1,752
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 86,793
AUG 0
AAT 31,798
AAC 86,774
AAU 0
CCT 48,163
CCC 34,468
CCA 54,411
CCG 122,452
CCU 0
CAA 15,758
CAG 35,267
CGT 201,220
CGC 2,067
CGA 5,578
CGG 10,183
AGA 8,624
AGG 37,898
CGU 0
TCT 20,592
TCC 23,443
TCA 4,688
TCG 35,464
AGT 30,888
AGC 2,769
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 1,783
ACC 14,808
ACA 1,516
ACG 13,079
ACU 0
GTT 14,966
GTC 15,014
GTA 104,558
GTG 1,756
GUU 0
GUC 0
GUA 0
GUG 0
TGG 29,031
UGG 0
TAT 14,106
TAC 1,209
UAU 0
UAC 0
TAA 44,262
TAG 23,060
TGA 5,419
UAA 0
UAG 0
UGA 0
UGA 0

MetaSUB NCBI Data:
#SRR10002723
Nucleotide Count:
1,122,305,084
Codon Codon count
GCT 18,593,795
GCC 28,300,083
GCA 19,603,558
GCG 20,764,072
GCU 0
TGT 12,504,023
TGC 909,603
UGU 0
UGC 0
GAT 15,615,406
GAC 16,728,868
GAU 0
GAA 18,667,662
GAG 9,443,905
TTT 9,357,936
TTC 11,192,255
UUU 0
UUC 0
GGT 12,298,896
GGC 1,493,046
GGA 2,111,855
GGG 2,592,858
GGU 0
CAT 7,056,674
CAC 8,522,738
CAU 0
ATT 2,679,083
ATC 5,721,800
ATA 4,826,655
AUU 0
AUC 0
AUA 0
AAA 6,965,670
AAG 2,534,582
CTT 2,620,700
CTC 8,205,379
CTA 3,140,484
CTG 1,840,805
TTA 1,714,786
TTG 900,584
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 1,061,601
AUG 0
AAT 1,014,530
AAC 3,851,273
AAU 0
CCT 1,723,502
CCC 4,381,988
CCA 2,665,965
CCG 3,027,989
CCU 0
CAA 1,565,144
CAG 2,391,905
CGT 4,929,604
CGC 739,175
CGA 1,282,849
CGG 1,798,106
AGA 624,932
AGG 1,249,703
CGU 0
TCT 1,110,084
TCC 1,240,336
TCA 919,237
TCG 1,706,886
AGT 2,210,614
AGC 300,932
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 761,858
ACC 1,217,569
ACA 899,548
ACG 697,956
ACU 0
GTT 592,362
GTC 1,634,775
GTA 1,434,536
GTG 901,216
GUU 0
GUC 0
GUA 0
GUG 0
TGG 688,041
UGG 0
TAT 442,504
TAC 649,238
UAU 0
UAC 0
TAA 563,499
TAG 354,108
TGA 493,356
UAA 0
UAG 0
UGA 0
UGA 0

MetaSUB NCBI Data:
#SRR10153698
Nucleotide Count:
29,218,250
Codon Codon count
GCT 371,752
GCC 660,179
GCA 577,654
GCG 830,638
GCU 0
TGT 382,960
TGC 21,115
UGU 0
UGC 0
GAT 317,156
GAC 352,636
GAU 0
GAA 807,333
GAG 203,574
TTT 192,947
TTC 152,984
UUU 0
UUC 0
GGT 402,251
GGC 31,973
GGA 65,607
GGG 180,788
GGU 0
CAT 28,385
CAC 48,545
CAU 0
ATT 127,235
ATC 108,964
ATA 123,565
AUU 0
AUC 0
AUA 0
AAA 313,177
AAG 97,536
CTT 36,978
CTC 133,980
CTA 88,495
CTG 71,672
TTA 91,013
TTG 3,954
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 108,188
AUG 0
AAT 40,711
AAC 87,542
AAU 0
CCT 48,829
CCC 43,045
CCA 72,727
CCG 148,990
CCU 0
CAA 21,953
CAG 40,015
CGT 242,277
CGC 2,307
CGA 11,447
CGG 13,732
AGA 7,744
AGG 50,594
CGU 0
TCT 36,620
TCC 27,508
TCA 6,133
TCG 39,650
AGT 38,508
AGC 6,685
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 3,002
ACC 10,014
ACA 2,885
ACG 15,724
ACU 0
GTT 22,691
GTC 7,429
GTA 121,604
GTG 4,246
GUU 0
GUC 0
GUA 0
GUG 0
TGG 29,843
UGG 0
TAT 8,151
TAC 2,095
UAU 0
UAC 0
TAA 57,110
TAG 22,370
TGA 2,712
UAA 0
UAG 0
UGA 0
UGA 0

MetaSUB NCBI Data:
#SRR10153699
Nucleotide Count:
23,469,250
Codon Codon count
GCT 300,668
GCC 539,527
GCA 490,220
GCG 656,985
GCU 0
TGT 284,249
TGC 15,966
UGU 0
UGC 0
GAT 241,196
GAC 290,556
GAU 0
GAA 664,518
GAG 168,787
TTT 173,512
TTC 113,789
UUU 0
UUC 0
GGT 309,974
GGC 23,104
GGA 65,765
GGG 144,432
GGU 0
CAT 30,277
CAC 44,178
CAU 0
ATT 86,043
ATC 113,437
ATA 84,562
AUU 0
AUC 0
AUA 0
AAA 250,425
AAG 75,755
CTT 23,471
CTC 119,655
CTA 59,307
CTG 58,688
TTA 61,961
TTG 2,219
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 86,393
AUG 0
AAT 34,742
AAC 73,271
AAU 0
CCT 38,125
CCC 32,905
CCA 61,185
CCG 105,215
CCU 0
CAA 29,734
CAG 27,622
CGT 169,118
CGC 1,329
CGA 7,488
CGG 9,166
AGA 7,841
AGG 33,510
CGU 0
TCT 25,261
TCC 47,302
TCA 4,464
TCG 40,195
AGT 27,630
AGC 4,074
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 1,807
ACC 6,126
ACA 2,019
ACG 10,865
ACU 0
GTT 19,484
GTC 5,857
GTA 99,286
GTG 2,645
GUU 0
GUC 0
GUA 0
GUG 0
TGG 35,009
UGG 0
TAT 6,846
TAC 1,205
UAU 0
UAC 0
TAA 51,638
TAG 13,319
TGA 1,935
UAA 0
UAG 0
UGA 0
UGA 0

MetaSUB NCBI Data:
#SRR10153696
Nucleotide Count:
30,461,750
Codon Codon count
GCT 390,052
GCC 685,693
GCA 614,716
GCG 835,417
GCU 0
TGT 397,787
TGC 20,562
UGU 0
UGC 0
GAT 326,519
GAC 388,191
GAU 0
GAA 864,102
GAG 221,115
TTT 213,042
TTC 168,267
UUU 0
UUC 0
GGT 402,841
GGC 33,337
GGA 77,711
GGG 182,953
GGU 0
CAT 36,757
CAC 56,069
CAU 0
ATT 117,186
ATC 134,324
ATA 122,065
AUU 0
AUC 0
AUA 0
AAA 315,104
AAG 101,433
CTT 39,390
CTC 130,969
CTA 82,677
CTG 65,237
TTA 80,165
TTG 3,512
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 111,865
AUG 0
AAT 43,785
AAC 89,545
AAU 0
CCT 45,182
CCC 39,492
CCA 80,760
CCG 138,675
CCU 0
CAA 30,519
CAG 41,343
CGT 227,653
CGC 7,228
CGA 15,749
CGG 11,040
AGA 11,405
AGG 50,231
CGU 0
TCT 43,546
TCC 48,341
TCA 5,935
TCG 52,597
AGT 40,840
AGC 10,113
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 2,039
ACC 7,748
ACA 1,590
ACG 17,617
ACU 0
GTT 21,493
GTC 8,293
GTA 126,757
GTG 4,495
GUU 0
GUC 0
GUA 0
GUG 0
TGG 42,962
UGG 0
TAT 9,396
TAC 1,358
UAU 0
UAC 0
TAA 56,616
TAG 20,507
TGA 4,120
UAA 0
UAG 0
UGA 0
UGA 0

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