Wednesday, July 8, 2020

Appendix 5

This is an appendix to: A Blast From The Past

About The Table Below

The "Search For 1918 Virus Sections In Sars-Cov-2 genomes" table below is grouped by search results in the "Locations of v1918:Sars" column.

The "Row#" column is the number of the row in the SQL database which the genome (one genome per row) came from.

The "GenBank File Id" column data is a unique description (like a social security number, etc.) that is used by scientists to identify individual genomes.

The "Sars Size" column is the length of the Sars-Cov-2 genome.

The "Locations of v1918:Sars" column shows the locations in the genomes of three "finds" during the search. Three 1918 Virus segments in the 1918 Virus genomes are shown, as well as where those three segments are also located in the Sars virus genome. The two numbers (the two locations) are separated by a colon (":"). Thus, "350:28702" means that the 1918 virus segment beginning at location 350 was found in the Sars genome at location 28702. Likewise, "480:1789" means that the 1918 virus segment beginning at location 480 was found in the Sars genome at location 1789, and so forth.

The "Sars-CoV Information" column is an inordinate description of the genome. They are not consistent because there is no rigid format in the way scientists in the different countries describe the genome. The country is usually specified, or can be discerned, by comparison with other descriptions when the country is not specified directly (Country Codes).

Search For 1918 Virus Sections
In Sars-Cov-2 genomes
Row# GenBank
File Id
Sars Size Locations of
v1918:Sars
Sars-CoV
Information
0028 CNA0013880 29911 350:28702
480:1973
1020:26881
Weifang WFCDC0020 2020
China: Weifang
1615 MT326151 29744 350:28518
480:1789
1020:26697
USA WA UW 1705
2020 USA
1580 MT326123.1 29744 350:28518
480:1789
1020:26697
USA WA UW
1656 2020
1616 MT326151.1 29744 350:28518
480:1789
1020:26697
USA WA UW
1705 2020
1579 MT326123 29744 350:28518
480:1789
1020:26697
USA WA UW 1656
2020 USA
4056 MT451165 29778 350:28617
480:1888
1020:26796
AUS VIC269 2020
Australia
5760 MT520208.1 29799 350:28617
480:1888
1020:26796
USA MA_MGH_00289
2020
4057 MT451165.1 29778 350:28617
480:1888
1020:26796
AUS VIC269
2020
0185 MT079852.1 29891 350:28710
480:1981
1020:26889
CHN WHUHnCoV012
2020
0184 MT079852 29891 350:28710
480:1981
1020:26889
CHN WHUHnCoV012
2020 China
0217 MT123291 29927 350:28694
480:1965
1020:26873
IQTC02 2020 CHN China:
Guangzhou
1823 MT345842 29696 350:28469
480:1740
1020:26648
USA WA UW 2250
2020 USA: WA
1824 MT345842.1 29696 350:28469
480:1740
1020:26648
USA WA UW
2250 2020
1570 MT326117.1 29890 350:28664
480:1938
1020:26843
USA WA UW
1688 2020
1569 MT326117 29890 350:28664
480:1938
1020:26843
USA WA UW 1688
2020 USA
0115 LC528233 29902 350:28683
480:1954
1020:26862
Hu DP Kng 19
027 RNA
5742 MT520188.1 29844 350:28647
480:1922
1020:26830
USA MA_MGH_00184
2020
6739 MT621560.1 29873 350:28645
480:1946
1020:26824
HKG HKU_HK
2020
8210 MT644268.1 29839 350:28644
480:1942
1020:26850
HKG VM20001061
2020
8212 NMDC60013002-05 26973 350:25784
480:1685
1020:23959
isolation BetaCoV Wuhan WH19002
2019 China: Wuhan

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