New and Improved! |
This new constant discovery applies only to "TATA" boxes in genomes where transcription from DNA to mRNA takes place (TATA box).
The type of tata box featured today has a "TATAAA" promoter and a "TATCTC" terminator (see example below).
I processed about 9,500 FASTA files, excluding those without any tata boxes in them, to produce today's appendices.
The appendices contain the results and the variation quantities from the ~(32/35/25/6) genetic constant in human and various other genomes.
How the constant was isolated is shown here (On The Origin Of A Genetic Constant - 9).
The big news is that the tata box examples in the appendices match the variation values of entire genomes that were featured in previous posts (On The Origin Of A Genetic Constant, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10).
Here is the list of appendices (001, 002, 003, 004, 005, 006, 007, 008, 009, 010, 011, 012).
A sample tata box:
From organism Xenopus tropicalis: TATAAACTGGCACAGTTGCTATGGGTCCCTGAGCAGGGAGGCCGGG
ACACATGGGACCTTGGTTATGGCCCAGTCAGGGTTATACTCATAGGTTACACTGGGTAGGGTCAGGGCTGAGCAGCTTGA
GCTCCAGCGAGGAGATTCAGTGCGATTACTGCCCAGAGTAGGGACCCAGTGTACAGACCTAGGGCCAAAGAGACTTGGTG
GGGGGGTGACCCGTCATTACTGATCTAATTCTCTGCGCATTGATTGGCCCTGAGGGGCTGAGAATTGTGGGAAGGTATAA
CTGTAAGTGCCCCCTGTGTGAGGTACTTGCCCTGCTGCCCTGAGATGTAATAGTTAATAAGTCCTTGTTTGAGTTCAGAA
ACCCCTGCTGCCCATTATTGGTGTCTCAGAGTGAGAGATATAGTTGCACTACACCCTCCCCCCAATACATACCTGAGAGA
TTGCCCTGGTCTATGGAGTCCAGCCCCTTACAGTTCCTAATAACTAGGCGATTCCTTTACTTACTGAATGTCACCTTAGT
GAATGTCACCCTGAGGCGCAAATCAAACAGCGTTAAACTTTGCGCGACTCCGGTAGAAAACAAACGCGCTGCCGCCCTTG
TGGCCCCGGCACCAACTTTCCCTTTTATTCCCATTTCTTGTCTCAGTCGCTCCCCAAACAGCATTTATGTGCGGTAATGT
TATGCCCCCCCCATTAATGAAGGGAATGCGGAGACATAATAACAGGGTCCCCCAGGGGCCCCCCGGCTGCTTAGCATGTG
ACCGAGTCGCTGCGATTCCCCCGCTGTATAATGAGCCGCTACTTCAGGCAGAATGCGATATCAAAGGCGCCGGCGCTGCG
ACTCTGTGTCAGATTGCGCTTTCTGCCCCCTCCCTTCTACGTGAACTTGTGCCCCTGTCAGACATCTTAGGGAGGCTTGA
AACATAGGGCCCCCCCTCCTCGATACCTGCCCCCCCCGCTCCCTGGGGCCCCAACGGGACTCGCTTTGTGCAGCTTTTAA
CTTGATAAAGTTTAACGTTCTGAGCGAAGTGAGACCCCCCCGAGAAATGCTGCCCCCCAGTGTCACTCATCCAAAGGTTT
AACATTCTGAGCGAAGTGAGACCCCCGAGAAAATGCCTTGACCCCCCAGTGTCACTCATCCAAAGGTTTAACGTTCTGAG
CGAAGTGAGACCCCCCCAGATAAATGCTTGCCCCCAGTGTCACCTCTCAAAGGGTTTAACGTTCTGAGCGAAGTAGGAGG
ACCCCCAGAGAAATGCTGCCCCCTCCAGTGTTTCACTCAGTCCCAAAGTTACGTTCTGAGCGAAGTGAGACCCCCCCCAG
CGAGAAATGCTGCCCCCAGTGTCACTCTCCAAGGTTTAACGTTCTAGAGCGAAAGTGAGGACCCCCCGAGAAATGTGCCC
CCCAGTGTCAACTCATCCAAAGGTTTAACGTTTGACGAAGTGAAACCCCCCCCCCCGAGAAATGCTGCCCCCCAGTGTCA
CTCATCCAAAGGTTTAACATTCTGAGCGAAGTGAGACCCCCCCGAAATGCTGCCCCCCAGTGTCACTCATCCAAAGGTTT
AACGTTCTGAGCGAAGTGAGACCCCCCCCCGAGAAATGCTGCCCCCCAGTGTCACATCATCCAAAAGTTTAACTGTTCTC
GAGCGAAGTGAGACCCCCCGCCGAGAAATGCTGCCCCCCAGTGTCACTCAATCAAAGGTTAACGTTCTGAGCGAAGTGGA
CCCCCCCAGAGAAATGGGCTTGCCCCCCCAGTTGTCACTCATCAAAGGTTTAACGTACTGAGCGAAGTAGAGACCCCCCC
CCGAGAAAATGCTGCCGCCCAGTGGTGTCACTCATCCAAAGTTTCAACGTTCTGAGCGAAGTGAGACCCCCCCAGAGAAA
TGCCTGCCCCAGTGTCCAACTCACTCCAAAGGTTTAACGTTCTGAAGTGAAGTGAGACCCCCCCCAGAGAAAATGCTGCC
CCCAGTGTACTCATCCAAAGTTTAACGTCTGAGCGAGTGAGACCCCCCCCGAGAAATGCTGCCCCAGTGTCCACTCATCA
AAGGTTTAACGTTGCTGAGCGAAGTGAGACCCCCCCCAGAGAAATGGCTGCCCCAGTGTCACTCATCCAAAGTTTAACGT
CTGAGCGAAGTGAAGACCCCCCCGAGAAATGCTGCCCCCCAGTTACTCATCCAAAGGTTTAAGTTCTGACCGAAGTTGAG
ACCCCCCCCGAGACATGCTGCCCCCAGTTGTCACTCATCCAAGGTTAACATTCTGAAGACGAAGTGAGACCCCCCCAGAG
AAATCTGCCCAGTGGTCACTATTCCAAAGTTTAACGTTCTTGAGCGAAGTGAGACCCCCTCCCAGAGAAATGCTGCCCAG
TGTCACTCATCCAATAGGTTTAACATTCTGAGCGAGTGAGACCCCCAGAGGAGAATGCTTGCCCCCAGTGTCACTCATCC
AAAGGTTTAACTTCTGAGCGAAGTGAGACCCCCCAGAGAAAATTGCTGCCCCCAGTGTCACTCATCAAATAGGTTTTAAC
GTTACTGACGAAGTGAGACCCCCCCCCGAGAAATGCTAGCCCCCCAGTGTCACTCATCCAAGGTTTAACGTTCTTGATGC
GAGTTGAGACCCCCCCGATTAAATGCTGCCCCCCAGTGTCATCATCCAAAGGTTTAACGTCTCTGAGCGAAGTGCAGACC
CCCCCGAAGAAAAAGCTGGCCCCCCGAGTTCACTCATCCAAGGTTTTACGTTCTGAGCGAAGTGAGAACCCCCCCGAGAA
TGCTGCCCCCCAGTGTCACTCATCAAAGTTTAACGTCTGAGCGAAGTGAGACCCGCCCCCAGAGAACTGCTGCCCCCCAG
TGGTCACTCATTCCAAAGGTGTAACGTGCTGAGCGAAGTGGACCCCCCCAGAAGAAAAATGCTGCCCCAGTCGTGTCACT
CTCCAAAGGTTTTAACGTTTGAGCGAAGTGGAACCCCCCCGGAAATGCTGCCCCCAGTGTCATCATTCAAGGTTTACGTT
CTGAGCGAAGTTGAGACCCCTCCGAGAGAAATGCTGCCCCCAGTGTCATCATCGAAAAAATGTTTTTAACGTTCTGAGCG
AAGTGAGACCCCCCAGGAAACTGCTGCCCCAGTGTCACTCATCAAGGTTTAACGTTCTGAGCAAGTGAGACCCCCCCCCT
GAGAAATGCTGCCCCCAGTGTCACCTCATCCAAAGTTTAACATTCTAGCGAAGTGGACCCCCCGAGTTAAATGCTGCCCC
CAGTGTCACTCATCCAAAGGTTAAGTGTTCTGAGCGAAGTGAGACCCCCCGAGAAATGCTGCCCCCCAGTGTCACTCATA
CAAAGGTTTAACGTTTCGAGCGAAGTGAGACCCCCCAGAGAAATGCTGCCCCCCAGGTCACTATCCAAAGGTTTAACGTT
CTGGAGCGAAGTGGACCCCCCAGAGAAAATGCTGCCCCCAGTGTCACTCATCCAAAGGTTTAACGTTACCTGGAGCGAAG
TTGAGACCCCCCCAGAGAAATGACTGCCCCCATGTCACTCATCCAAGTGGCCCCATCTCTTCCTGTATTTATACAGACTG
TGTGAGGTGCGGAACTACTACTCCCTGCCTCACAGGAGCTTACACTTTACTCAGCTCCACCCCATACCCCCCCTAATGTC
ACCCAGTGTCGGACTGGGACCCCGAGGGCCACCAGAAAACCTTAGACCCTAGTCCCCCTCTCCCAACTATATCTC
The video below points out the dynamics involved.
The previous post in this series is here.
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