Tuesday, March 23, 2021

Appendix usa_co

This is an appendix to The Coronaviridae -5

Coronaviridae by Country

Definitions:

'GBFF': GenBank flat file
(GenBank-format text file);
'version': the GenBank virus identity;
'virus type' elements:
'CO-':SARS-CoV-1;
'C2-': SARS-CoV-2;
'-AN-': animal virus;
'-HS-':human virus;
'-RN-': RNA genome;
'-PG': partial genome;
'-CG': complete genome;
'meta-host': the host of the
microbe which reproduces the virus;
'collection date': the date
(if known) the virus was collected;
'publish date': the date
the virus info was made known;
'GBFF gene list': the genes
listed in the GBFF;
'gene test count': verified count
(genes in genome);
'avg gene len': average length
of genes in genome
(mutant CoV-2 are in bold).

USA (Cov1, count: 358)
version virus type meta-host collection
date
publish
date
GBFF
gene
list
gene
test
count
avg
gene
len
AY585228.1 CO-HS-RN-PG human ? 2004-08-04 3 3 7483.67
DQ286389.1 CO-AN-RN-PG cat ? 2007-02-14 9 9 3081.56
AY994055.1 CO-AN-RN-PG cat ? 2008-12-02 10 10 2874.4
EU186072.1 CO-AN-RN-PG cat ? 2008-02-20 5 5 5332.2
NC_006213.1 CO-HS-RN-PG human ? 2019-02-21 8 8 3759.75
AY514485.1 CO-AN-RN-PG ?? animal ? 2007-04-06 7 0 0
GU593319.1 CO-AN-RN-PG mice ? 2010-07-23 9 9 4871.56
DQ915164.2 CO-AN-RN-PG alpaca ? 2007-06-19 6 6 1433
NC_002306.3 CO-AN-RN-PG cat ? 2018-08-13 10 10 2874.4
KF650371.1 CO-AN-RN-PG pig ? 2013-12-20 7 7 5680.86
KF650372.1 CO-AN-RN-PG pig ? 2013-12-20 7 7 5680.86
MN690608.1 CO-AN-RN-PG bottlenose dolphin ? 2020-03-15 14 14 2184.86
MN690609.1 CO-AN-RN-PG bottlenose dolphin ? 2020-03-15 14 14 2184.86
KF650374.1 CO-AN-RN-PG pig ? 2013-12-20 7 7 5680.86
KF650375.1 CO-AN-RN-PG pig ? 2013-12-20 7 7 5680.86
MN690610.1 CO-AN-RN-PG bottlenose dolphin ? 2020-03-15 14 14 2184.86
MN690611.1 CO-AN-RN-PG bottlenose dolphin ? 2020-03-15 14 14 2184.86
JX169866.1 CO-AN-RN-PG mice 1947-08-14 2014-09-26 11 11 4015.36
JX169867.1 CO-AN-RN-PG mice 1947-08-14 2014-09-26 11 11 4042.91
JX504050.1 CO-HS-RN-PG human 2004-01-01 2013-06-28 5 5 5260.8
KX900393.1 CO-AN-RN-PG ?? animal 2006-12-08 2018-10-01 9 9 3089
JQ410000.1 CO-AN-RN-PG alpaca 2008-01-01 2012-04-29 6 6 1009.5
JX163927.1 CO-AN-RN-PG ?? animal 2010-02-05 2020-05-27 14 14 3074.36
JX163924.1 CO-AN-RN-PG ?? animal 2010-02-05 2020-05-27 14 14 3074.36
JX163925.1 CO-AN-RN-PG ?? animal 2010-02-05 2020-05-27 14 14 3074.36
JX163928.1 CO-AN-RN-PG ?? animal 2010-02-05 2020-05-27 14 14 3074.36
JX163923.1 CO-AN-RN-PG ?? animal 2010-02-10 2020-05-27 14 14 3074.36
JX163926.1 CO-AN-RN-PG ?? animal 2010-02-10 2020-05-27 14 14 3074.36
KC461235.1 CO-AN-RN-PG cat 2011-01-01 2013-12-31 10 10 2852.8
KC461237.1 CO-AN-RN-PG cat 2011-01-01 2013-12-31 10 10 2805.4
KC461236.1 CO-AN-RN-PG cat 2011-01-01 2013-12-31 10 10 2852.8
KM052365.1 CO-AN-RN-PG pig 2013-05-15 2014-08-26 4 4 1598.75
KF650370.1 CO-AN-RN-PG pig 2013-05-16 2013-12-20 7 7 5680.86
KJ778615.1 CO-AN-RN-PG wild pig 2013-05-20 2014-06-18 2 2 6624
KF650373.1 CO-AN-RN-PG pig 2013-06-06 2013-12-20 7 7 5680.86
MH779860.1 CO-AN-RN-PG ?? animal 2014-01-01 2018-09-24 3 3 1802
MH779856.1 CO-AN-RN-PG ?? animal 2014-01-01 2018-09-24 3 3 1802
KJ481931.1 CO-AN-RN-PG pig 2014-01-04 2014-06-05 7 7 3586
MF618252.1 CO-AN-RN-PG mice 2014-01-16 2017-11-08 1 1 135
KJ769231.1 CO-AN-RN-PG pig 2014-03-01 2015-07-09 7 7 3586
KJ813439.1 CO-HS-RN-PG human 2014-04-30 2015-09-29 9 9 3277.56
KJ829365.1 CO-HS-RN-PG human 2014-05-10 2014-05-16 9 9 3277.56
KP223131.1 CO-HS-RN-PG human 2014-12-14 2014-12-14 9 9 3277.56
KT381875.1 CO-HS-RN-PG human 2015-01-01 2016-11-22 6 6 4496.83
MH779857.1 CO-AN-RN-PG ?? animal 2015-01-01 2018-09-24 3 3 1802
KY419113.1 CO-AN-RN-PG wild pig 2015-07-25 2017-04-03 2 1 1274
KY419107.1 CO-AN-RN-PG wild pig 2015-07-25 2020-08-21 1 0 0
KY419112.1 CO-AN-RN-PG wild pig 2015-08-01 2020-08-21 1 0 0
KY419109.1 CO-AN-RN-PG wild pig 2015-08-01 2020-08-21 1 0 0
KY419111.1 CO-AN-RN-PG wild pig 2015-08-08 2020-08-21 1 0 0
KY419110.1 CO-AN-RN-PG wild pig 2015-08-12 2020-08-21 1 0 0
KY419104.1 CO-AN-RN-PG wild pig 2015-08-15 2020-08-21 1 0 0
KY419106.1 CO-AN-RN-PG wild pig 2015-08-15 2020-08-21 1 0 0
KY419105.1 CO-AN-RN-PG wild pig 2015-08-20 2020-08-21 1 0 0
KU521535.1 CO-HS-RN-PG human 2015-09-01 2016-11-22 4 4 6406
KY419103.1 CO-AN-RN-PG wild pig 2015-09-15 2020-08-21 1 0 0
MH779858.1 CO-AN-RN-PG ?? animal 2016-01-01 2018-09-24 3 3 1802
MH779859.1 CO-AN-RN-PG ?? animal 2016-01-01 2018-09-24 3 3 1793
KY406735.1 CO-AN-RN-PG pig 2016-11-01 2019-01-01 9 9 3010
KX179500.1 CO-HS-RN-PG human 2016-12-03 2016-12-03 6 6 4496.83
KX900394.1 CO-AN-RN-PG ?? animal 2018-10-01 2018-10-01 9 9 3089

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