GC-8 Appendix AVG

This is an appendix to: On The Origin Of A Genetic Constant - 8

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GenBank Genome Files
Average Variations
Analysis Report

after processing 100,000 genomes:

Sample genome HTML tables
showing AVG variation
summaries for this section:

---

GenBank Genome
Table: 500001
(v= <1 [0.1684%])

---

URL Link: AC133204.3

Genome info for AC133204.3:

AC133204 224181 bp DNA linear ROD 25-NOV-2003 Mus musculus BAC clone RP23-106N3 from chromosome 5 complete

Nucleotide count: 224,181

Atom	Atom Count	Percent
Carbon	1,071,062	32.3550
Hydrogen	1,178,966	35.6146
Nitrogen	847,036	25.5875
Oxygen	213,284	6.4429
Totals	3,310,348	~100.00

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GenBank Genome
Table: 1
(v= <1 [0.2719%])

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URL Link: LR862133.1

Genome info for LR862133.1:

LR862133 18411140 bp DNA linear PLN 28-JUL-2020 Ananas comosus var. bracteatus genome assembly
chromosome: 5.

Nucleotide count: 18,405,240
Non-Nucleotide Count: 5,900

Atom	Atom Count	Percent
Carbon	88,541,178	32.4808
Hydrogen	97,752,075	35.8597
Nitrogen	67,878,531	24.9008
Oxygen	18,424,038	6.7587
Totals	272,595,822	~100.00

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GenBank Genome
Table: 6234
(v= >1 <2 [1.0785%])

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URL Link: LR905064.1

Genome info for LR905064.1:

LR905064 14426 bp DNA linear INV 24-NOV-2020 Darwinula stevensoni.

Nucleotide count: 14,426

Atom	Atom Count	Percent
Carbon	69,819	32.7286
Hydrogen	78,088	36.6048
Nitrogen	49,634	23.2666
Oxygen	15,786	7.3999
Totals	213,327	~100.00

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GenBank Genome
Table: 92511
(v= >2 <3 [2.3246%])

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URL Link: MK361035.1

Genome info for MK361035.1:

MK361035 10487 bp DNA circular INV 25-NOV-2019 Beroe cucumis mitochondrion
complete genome.

Nucleotide count: 10,487

Atom	Atom Count	Percent
Carbon	51,400	32.9194
Hydrogen	58,411	37.4096
Nitrogen	32,437	20.7744
Oxygen	13,891	8.8966
Totals	156,139	~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 99,560

variation count:
@ <2.0% = 439

variation count:
@ <3.0% = 1

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0

---

after processing 200,000 genomes:

Sample genome HTML tables
showing AVG variation
summaries for this section:

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GenBank Genome
Table: 100001
(v= <1 [0.3136%])

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URL Link: OD565703.1

Genome info for OD565703.1:

OD565703 160245 bp DNA linear INV 11-DEC-2020 4 Tbi b3v08.

Nucleotide count: 154,008
Non-Nucleotide Count: 6,237

Atom	Atom Count	Percent
Carbon	743,062	32.5406
Hydrogen	819,390	35.8832
Nitrogen	568,034	24.8757
Oxygen	153,003	6.7004
Totals	2,283,489	~100.00

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GenBank Genome
Table: 103116
(v= >1 <2 [1.1441%])

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URL Link: OC917970.1

Genome info for OC917970.1:

OC917970 11508 bp DNA linear INV 25-JAN-2021 Oppiella nova.

Nucleotide count: 11,508

Atom	Atom Count	Percent
Carbon	55,876	32.6699
Hydrogen	62,421	36.4967
Nitrogen	39,569	23.1354
Oxygen	13,166	7.6980
Totals	171,032	~100.00

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GenBank Genome
Table: 105813
(v= >2 <3 [2.2322%])

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URL Link: MZ636522.1

Genome info for MZ636522.1:

MZ636522 13647 bp DNA circular INV 31-AUG-2022 Dipetalonema gracile mitochondrion
complete genome.

Nucleotide count: 13,647

Atom	Atom Count	Percent
Carbon	67,325	32.7518
Hydrogen	76,012	36.9778
Nitrogen	43,084	20.9592
Oxygen	19,140	9.3111
Totals	205,561	~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 96,781

variation count:
@ <2.0% = 3,211

variation count:
@ <3.0% = 8

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0

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after processing 300,000 genomes:

Sample genome HTML tables
showing AVG variation
summaries for this section:

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GenBank Genome
Table: 200001
(v= <1 [0.2079%])

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URL Link: EA695480.1

Genome info for EA695480.1:

EA695480 14337 bp DNA linear PAT 10-JUN-2008 Sequence 74359 from patent US 7365185.

Nucleotide count: 14,337

Atom	Atom Count	Percent
Carbon	68,750	32.3906
Hydrogen	75,474	35.5585
Nitrogen	54,448	25.6524
Oxygen	13,581	6.3985
Totals	212,253	~100.00

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GenBank Genome
Table: 202972
(v= >1 <2 [1.0673%])

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URL Link: EA740987.1

Genome info for EA740987.1:

EA740987 10907 bp DNA linear PAT 10-JUN-2008 Sequence 12433 from patent US 7368527.

Nucleotide count: 10,907

Atom	Atom Count	Percent
Carbon	52,319	32.3758
Hydrogen	58,691	36.3189
Nitrogen	37,635	23.2891
Oxygen	12,954	8.0161
Totals	161,599	~100.00

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GenBank Genome
Table: 235994
(v= >2 <3 [2.0835%])

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URL Link: FV536683.1

Genome info for FV536683.1:

FV536683 10359 bp DNA linear PAT 18-MAR-2010 Modified Microbial Nucleic Acid.

Nucleotide count: 10,359

Atom	Atom Count	Percent
Carbon	51,795	32.8822
Hydrogen	57,899	36.7573
Nitrogen	33,483	21.2568
Oxygen	14,340	9.1038
Totals	157,517	~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 99,021

variation count:
@ <2.0% = 975

variation count:
@ <3.0% = 4

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0

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after processing 400,000 genomes:

Sample genome HTML tables
showing AVG variation
summaries for this section:

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GenBank Genome
Table: 300001
(v= <1 [0.1358%])

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URL Link: MX519141.1

Genome info for MX519141.1:

MX519141 11326 bp DNA linear PAT 28-JUN-2021 Sequence 2781 from patent US 10961585.

Nucleotide count: 11,326

Atom	Atom Count	Percent
Carbon	53,376	32.0309
Hydrogen	59,147	35.4941
Nitrogen	42,571	25.5468
Oxygen	11,545	6.9282
Totals	166,639	~100.00

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GenBank Genome
Table: 301529
(v= >1 <2 [1.2606%])

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URL Link: MI279662.1

Genome info for MI279662.1:

MI279662 11127 bp DNA linear PAT 12-FEB-2018 Sequence 21784 from patent US 9827332.

Nucleotide count: 11,127

Atom	Atom Count	Percent
Carbon	52,077	31.7514
Hydrogen	56,530	34.4664
Nitrogen	45,834	27.9450
Oxygen	9,574	5.8373
Totals	164,015	~100.00

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GenBank Genome
Table: 317731
(v= >3 <4 [3.1228%])

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URL Link: MQ014117.1

Genome info for MQ014117.1:

MQ014117 22500 bp DNA linear PAT 18-MAY-2021 Sequence 23 from Patent EP3717009.

Nucleotide count: 22,500

Atom	Atom Count	Percent
Carbon	108,000	32.8767
Hydrogen	126,000	38.3562
Nitrogen	63,000	19.1781
Oxygen	31,500	9.5890
Totals	328,500	~100.00

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GenBank Genome
Table: 374519
(v= >2 <3 [2.4758%])

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URL Link: AP015624.1

Genome info for AP015624.1:

AP015624 19638 bp DNA linear PLN 03-DEC-2015 Vigna angularis var. angularis DNA scaffold: Scaffold 0580

Nucleotide count: 19,638

Atom	Atom Count	Percent
Carbon	94,239	31.7826
Hydrogen	98,264	33.1401
Nitrogen	90,066	30.3753
Oxygen	13,942	4.7020
Totals	296,511	~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 99,401

variation count:
@ <2.0% = 595

variation count:
@ <3.0% = 3

variation count:
@ <4.0% = 1

variation count:
@ >=4.0% = 0

---

after processing 500,000 genomes:

Sample genome HTML tables
showing AVG variation
summaries for this section:

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GenBank Genome
Table: 400001
(v= <1 [0.4358%])

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URL Link: MH064508.1

Genome info for MH064508.1:

MH064508 117444 bp DNA circular PLN 08-JUN-2019 Radula japonica voucher 16-8723 chloroplast complete genome.

Nucleotide count: 117,444

Atom	Atom Count	Percent
Carbon	569,471	32.6497
Hydrogen	628,230	36.0185
Nitrogen	428,692	24.5783
Oxygen	117,794	6.7535
Totals	1,744,187	~100.00

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GenBank Genome
Table: 403520
(v= >1 <2 [1.2166%])

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URL Link: MZ748319.1

Genome info for MZ748319.1:

MZ748319 19912 bp DNA circular PLN 23-MAR-2022 Galdieria sp. strain ACUF 613 mitochondrion complete genome.

Nucleotide count: 19,912

Atom	Atom Count	Percent
Carbon	98,326	32.3620
Hydrogen	103,872	34.1873
Nitrogen	84,156	27.6982
Oxygen	17,478	5.7525
Totals	303,832	~100.00

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GenBank Genome
Table: 420094
(v= >2 <3 [2.0278%])

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URL Link: MN366148.1

Genome info for MN366148.1:

MN366148 10410 bp DNA linear PLN 10-FEB-2021 UNVERIFIED: Phalaenopsis aphrodite subsp. formosana clone Contig 17

Nucleotide count: 10,410

Atom	Atom Count	Percent
Carbon	48,410	32.3419
Hydrogen	56,312	37.6211
Nitrogen	31,984	21.3680
Oxygen	12,976	8.6690
Totals	149,682	~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 99,890

variation count:
@ <2.0% = 109

variation count:
@ <3.0% = 1

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0

---

after processing 600,000 genomes:

Sample genome HTML tables
showing AVG variation
summaries for this section:

---

GenBank Genome
Table: 500001
(v= <1 [0.1684%])

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URL Link: AC133204.3

Genome info for AC133204.3:

AC133204 224181 bp DNA linear ROD 25-NOV-2003 Mus musculus BAC clone RP23-106N3 from chromosome 5 complete

Nucleotide count: 224,181

Atom	Atom Count	Percent
Carbon	1,071,062	32.3550
Hydrogen	1,178,966	35.6146
Nitrogen	847,036	25.5875
Oxygen	213,284	6.4429
Totals	3,310,348	~100.00

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GenBank Genome
Table: 516503
(v= >2 <3 [2.2540%])

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URL Link: MF597730.1

Genome info for MF597730.1:

MF597730 10830 bp DNA linear ROD 04-AUG-2017 Mus musculus chromosome X WGS contig MG104 gap closure genomic

Nucleotide count: 10,830

Atom	Atom Count	Percent
Carbon	52,672	31.9918
Hydrogen	54,788	33.2770
Nitrogen	49,280	29.9316
Oxygen	7,902	4.7995
Totals	164,642	~100.00

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GenBank Genome
Table: 534038
(v= >1 <2 [1.0598%])

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URL Link: AC140396.3

Genome info for AC140396.3:

AC140396 109575 bp DNA linear ROD 29-MAY-2004 Mus musculus BAC clone RP24-184N24 from chromosome Y complete

Nucleotide count: 109,575

Atom	Atom Count	Percent
Carbon	530,504	32.4881
Hydrogen	570,549	34.9405
Nitrogen	445,111	27.2586
Oxygen	86,754	5.3128
Totals	1,632,918	~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 99,957

variation count:
@ <2.0% = 40

variation count:
@ <3.0% = 3

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0

---

after processing 700,000 genomes:

Sample genome HTML tables
showing AVG variation
summaries for this section:

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GenBank Genome
Table: 600001
(v= <1 [0.1939%])

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URL Link: JX684087.1

Genome info for JX684087.1:

JX684087 41468 bp DNA linear ENV 26-APR-2013 Uncultured organism clone FLSS-21 genomic sequence.

Nucleotide count: 41,468

Atom	Atom Count	Percent
Carbon	195,141	32.0406
Hydrogen	215,920	35.4524
Nitrogen	157,202	25.8114
Oxygen	40,779	6.6956
Totals	609,042	~100.00

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GenBank Genome
Table: 600781
(v= >1 <2 [1.1010%])

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URL Link: CP021571.1

Genome info for CP021571.1:

CP021571 11301 bp DNA circular ENV 08-JAN-2019 Unidentified plasmid plasmid MO1-2 2829 complete sequence.

Nucleotide count: 11,301

Atom	Atom Count	Percent
Carbon	54,070	32.5637
Hydrogen	60,864	36.6553
Nitrogen	38,558	23.2216
Oxygen	12,552	7.5594
Totals	166,044	~100.00

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GenBank Genome
Table: 613004
(v= >2 <3 [2.0099%])

---

URL Link: JQ316200.1

Genome info for JQ316200.1:

JQ316200 13641 bp DNA circular INV 24-MAR-2012 Wuchereria bancrofti mitochondrion complete genome.

Nucleotide count: 13,592
Non-Nucleotide Count: 49

Atom	Atom Count	Percent
Carbon	66,986	32.7725
Hydrogen	75,381	36.8797
Nitrogen	43,749	21.4039
Oxygen	18,281	8.9439
Totals	204,397	~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 98,240

variation count:
@ <2.0% = 1,725

variation count:
@ <3.0% = 35

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0

---

after processing 800,000 genomes:

Sample genome HTML tables
showing AVG variation
summaries for this section:

---

GenBank Genome
Table: 700001
(v= <1 [0.3967%])

---

URL Link: CP014211.1

Genome info for CP014211.1:

CP014211 4106512 bp DNA circular BCT 17-DEC-2019 Bordetella pertussis strain J377 chromosome complete genome.

Nucleotide count: 4,106,512

Atom	Atom Count	Percent
Carbon	19,140,791	31.7939
Hydrogen	21,196,927	35.2093
Nitrogen	15,755,921	26.1715
Oxygen	4,109,066	6.8254
Totals	60,202,705	~100.00

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GenBank Genome
Table: 700621
(v= >1 <2 [1.0848%])

---

URL Link: CP009334.1

Genome info for CP009334.1:

CP009334 349601 bp DNA circular BCT 26-JUL-2016 Bacillus thuringiensis strain HD1011 plasmid 2 complete sequence.

Nucleotide count: 349,601

Atom	Atom Count	Percent
Carbon	1,677,817	32.5787
Hydrogen	1,884,682	36.5954
Nitrogen	1,197,598	23.2541
Oxygen	389,952	7.5718
Totals	5,150,049	~100.00

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GenBank Genome
Table: 786399
(v >=4 [4.3408%])

---

URL Link: CP045289.2

Genome info for CP045289.2:

CP045289 25142 bp DNA circular BCT 06-MAR-2020 Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990

Nucleotide count: 25,142

Atom	Atom Count	Percent
Carbon	118,003	32.5860
Hydrogen	142,266	39.2861
Nitrogen	60,628	16.7421
Oxygen	41,231	11.3858
Totals	362,128	~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 99,913

variation count:
@ <2.0% = 86

variation count:
@ <3.0% = 0

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 1

---

after processing 900,000 genomes:

Sample genome HTML tables
showing AVG variation
summaries for this section:

---

GenBank Genome
Table: 800001
(v= <1 [0.0528%])

---

URL Link: CP057830.1

Genome info for CP057830.1:

CP057830 61278 bp DNA circular BCT 13-MAY-2022 Escherichia coli strain RHB13-C18 plasmid pRHB13-C18 2 complete

Nucleotide count: 61,278

Atom	Atom Count	Percent
Carbon	291,362	32.2487
Hydrogen	322,125	35.6536
Nitrogen	229,129	25.3606
Oxygen	60,869	6.7371
Totals	903,485	~100.00

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GenBank Genome
Table: 800233
(v= >1 <2 [1.0316%])

---

URL Link: CP051757.1

Genome info for CP051757.1:

CP051757 20671 bp DNA circular BCT 01-DEC-2020 Sarcina sp. JB2 plasmid p3 complete sequence.

Nucleotide count: 20,671

Atom	Atom Count	Percent
Carbon	100,807	32.8231
Hydrogen	112,193	36.5304
Nitrogen	71,745	23.3604
Oxygen	22,377	7.2860
Totals	307,122	~100.00

---

GenBank Genome
Table: 819779
(v= >2 <3 [2.3151%])

---

URL Link: CP095532.1

Genome info for CP095532.1:

CP095532 14577 bp DNA linear BCT 05-DEC-2022 Escherichia coli strain GN06156 plasmid unnamed1.

Nucleotide count: 14,577

Atom	Atom Count	Percent
Carbon	71,294	32.5927
Hydrogen	80,958	37.0107
Nitrogen	45,484	20.7934
Oxygen	21,006	9.6031
Totals	218,742	~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 99,821

variation count:
@ <2.0% = 178

variation count:
@ <3.0% = 1

variation count:
@ <4.0% = 0

variation count:
@ >=4.0% = 0

---

after processing 1,000,000 genomes:

Sample genome HTML tables
showing AVG variation
summaries for this section:

---

GenBank Genome
Table: 900001
(v= <1 [0.1424%])

---

URL Link: AC016793.3

Genome info for AC016793.3:

AC016793 96138 bp DNA linear HTG 15-DEC-1999 Drosophila melanogaster strain y chromosome 2 clone BACR33K22

Nucleotide count: 91,171
Non-Nucleotide Count: 4,967

Atom	Atom Count	Percent
Carbon	435,426	32.3266
Hydrogen	481,317	35.7336
Nitrogen	338,611	25.1389
Oxygen	91,606	6.8009
Totals	1,346,960	~100.00

---

GenBank Genome
Table: 901169
(v= >1 <2 [1.1137%])

---

URL Link: AC019006.3

Genome info for AC019006.3:

AC019006 149651 bp DNA linear HTG 16-MAR-2000 Homo sapiens chromosome 8 clone RP11-458N4 map 8 WORKING DRAFT

Nucleotide count: 148,150
Non-Nucleotide Count: 1,501

Atom	Atom Count	Percent
Carbon	724,599	32.4130
Hydrogen	772,412	34.5518
Nitrogen	613,462	27.4416
Oxygen	125,045	5.5936
Totals	2,235,518	~100.00

---

GenBank Genome
Table: 918032
(v= >2 <3 [2.0842%])

---

URL Link: AC027353.4

Genome info for AC027353.4:

AC027353 101509 bp DNA linear HTG 26-SEP-2000 Homo sapiens chromosome 16 clone RP11-167D21 WORKING DRAFT

Nucleotide count: 71,328
Non-Nucleotide Count: 30,181

Atom	Atom Count	Percent
Carbon	349,107	32.2159
Hydrogen	363,652	33.5581
Nitrogen	320,538	29.5795
Oxygen	50,351	4.6464
Totals	1,083,648	~100.00

---

GenBank Genome
Table: 994274
(v= >3 <4 [3.0781%])

---

URL Link: LN006378.1

Genome info for LN006378.1:

LN006378 14473 bp DNA linear INV 07-OCT-2014 Spirometra erinaceieuropaei genome assembly S erinaceieuropaei

Nucleotide count: 11,935
Non-Nucleotide Count: 2,538

Atom	Atom Count	Percent
Carbon	54,428	32.2485
Hydrogen	65,229	38.6480
Nitrogen	32,519	19.2674
Oxygen	16,601	9.8361
Totals	168,777	~100.00

Variation Summary for this section:

variation count:
@ <1.0% = 99,924

variation count:
@ <2.0% = 72

variation count:
@ <3.0% = 3

variation count:
@ <4.0% = 1

variation count:
@ >=4.0% = 0

---

Total processed 1,052,789 genomes:


Variation totals for all sections:

variation count:
@ <1.0% = 1,045,196
(99.2788%)

variation count:
@ <2.0% = 7,529
(0.7151%)

variation count:
@ <3.0% = 61
(0.0058%)

variation count:
@ <4.0% = 2
(0.0002%)

variation count:
@ >=4.0% = 1
(0.0001%)