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| Shock and Awe Shucks |
Today's appendices contain genome information about virus genome content that was also found in 22 chromosomes in the human genome.
The virus mRNA material (nucleotides, codons) are reverse transcribed into DNA material (nucleotides, codons) using the reverse technique developed from what is shown in the first video at the end of this post.
That "reverse technique" is simply a process of locating a start codon in the virus mRNA ("AUG") and converting it to the DNA codon it came from ("ATG"), then finding an mRNA stop codon ("UAA", "UAG", or "UGA") in the virus mRNA and likewise converting it to DNA using the same technique ("TAA", "TAG", or "TGA" by changing the "U" to a "T"):
"I utilized "The Central Dogma of biology", i.e. "RNA comes from DNA" to construct the source of the coding mRNA in these viruses by reverse engineering the DNA from the mRNA (see [first] video below).
Basically, all that entails is to change the "U" (uracil) nucleotide in mRNA codons into a "T" (thymine) to make DNA codons, and "presto chango" you have derived the DNA from which that mRNA originated (then remove any nucleotides that are not within the mRNA start codon "AUG" and any following mRNA stop codon ''UAA","UAG", or "UGA"... see second video below; note that mRNA codons ..."ones that code for proteins"... are only counted if they are located within a start and stop codon span)."
(On The Origin of The Containment Entity - 2). Not really complicated is it?
II. Moving Along
Then copy those two now reversed codons (along with all the codons between them) into a string of A,C,G, T characters.
Then search for that strand of virus characters in the human DNA characters.
In other words, identify where in the human DNA the virus mRNA can originate.
III. Automated Analysis (like in a Word Processor)
Appendix 1 is the record of C++ software doing that using one SQL database of virus RNA and four SQL databases of human chromosome DNA.
The record, in this case (Appendix 1) is made by selecting only matches of 252 or more nucleotides ('A', 'C', 'G', and/or 'T' characters) of mRNA sources in the human DNA.
Note that Appendix 2 is a record listing all matches (i.e. less than 252 nucleotide characters) just to show that there are incredible numbers of matches (I am not making appendices of the other 138 report files today).
Anyway, finding that many matches is to be expected (see second video below) because our genetic material is by far mostly composed of microbe/virus genes and nucleotide pairs than it is composed of human genes and nucleotide pairs.
In other words when genetic material is collected from our human bodies it is not all human genetic material (in fact only about 1% is 'human').
IV. Like I Said
That is why I mentioned, with a question (in the previous post), the issue/question: " 'are genes' or 'genomes' the location of, or embodiment of, the containment entity or entities?" .
Anyway, today's two appendices are quite different from one another in the sense that Appendix 1 has a smaller number of lines in it because it only records 252 or larger nucleotide strand matches (its purpose), while Appendix 2 searches were for only 9 or more characters to establish its recorded nucleotide strand matches.
The brackets at the end of each appendix's report lines (e.g. "[G,GAA]") indicate only which of my SQL databases and tables the DNA data was loaded from.
Both appendices contain URL links (blue color) to the virus and to the human chromosome involved in the study.
In other words, where I got my data from ... to store on my SQL server.
Those links are to the official realm of GenBank databases.
When you click on one of those links with your mouse, the official data will be loaded into your browser for your perusal.
But note that the human data is very large (e.g. ~80 to ~200 megabytes per chromosome) ... and the nucleotide data requires an additional load (click on the "FASTA" link in the GenBank preliminary link if you want to view the gigantic nucleotide data of the 'human' chromosome).
V. So What?
What is the point of all this?
Simply to point out that the containment entity operations are incredibly complex to the point that it has not been adequately explained by scientists using teleological and metaphorical story telling.
Such as: "When cells rub against one another, or something else rubs them they wiggle and put messages in a bottle which float out into the stuff ocean until something reads the message" ... garbage! (see e.g. A New Potential Source for Toxins of Power: Wireless Signals).
And many of those commercial science reporters do not point out that "we don't know a lot of stuff" (like the scientist in the third video below does).
VI. Closing Comments
Stay tuned ... no commercials on Dredd Blog since 2009 and before!
The next post in this series is here, the previous post in this series is here.
