Dredd Blog: GC Apdx 1

Monday, October 16, 2023

GC Apdx 1

This is an appendix to: On The Origin Of A Genetic Constant - 2

GenBank Genome
Table: 1
(Arabian camel)
**URL Link:** HE863813.1

**Genome info for HE863813.1**:

HE863813 10436 bp DNA linear MAM 12-DEC-2012 Camelus dromedarius csn3 gene for kappa casein.

**Nucleotide count:** 10,436
Atom	Atom Count	Percent
Carbon	50,477	32.6501
Hydrogen	55,794	36.0893
Nitrogen	37,932	24.5356
Oxygen	10,397	6.7251
Totals	154,600	~100.00

GenBank Genome
Table: 2
(Arabian camel)
**URL Link:** MW456837.1

**Genome info for MW456837.1**:

MW456837 10201 bp DNA linear MAM 21-APR-2021 Camelus dromedarius isolate 419 granzyme O GZMO gene
complete

**Nucleotide count:** 10,197
Non-Nucleotide Count: 4
Atom	Atom Count	Percent
Carbon	48,982	32.4412
Hydrogen	54,071	35.8117
Nitrogen	37,721	24.9829
Oxygen	10,213	6.7642
Totals	150,987	~100.00

GenBank Genome
Table: 3
(Arabian camel)
**URL Link:** MW456838.1

**Genome info for MW456838.1**:

MW456838 10201 bp DNA linear MAM 21-APR-2021 Camelus dromedarius isolate 433 granzyme O GZMO gene
complete

**Nucleotide count:** 10,197
Non-Nucleotide Count: 4
Atom	Atom Count	Percent
Carbon	48,982	32.4414
Hydrogen	54,071	35.8119
Nitrogen	37,721	24.9831
Oxygen	10,212	6.7635
Totals	150,986	~100.00

GenBank Genome
Table: 4
(Arabian camel)
**URL Link:** MW456839.1

**Genome info for MW456839.1**:

MW456839 10201 bp DNA linear MAM 21-APR-2021 Camelus dromedarius isolate 795 granzyme O GZMO gene
complete

**Nucleotide count:** 10,200
Non-Nucleotide Count: 1
Atom	Atom Count	Percent
Carbon	48,995	32.4406
Hydrogen	54,085	35.8108
Nitrogen	37,735	24.9851
Oxygen	10,215	6.7636
Totals	151,030	~100.00

GenBank Genome
Table: 5
(Arabian camel)
**URL Link:** MW456840.1

**Genome info for MW456840.1**:

MW456840 10201 bp DNA linear MAM 21-APR-2021 Camelus dromedarius isolate 799 granzyme O GZMO gene
complete

**Nucleotide count:** 10,199
Non-Nucleotide Count: 2
Atom	Atom Count	Percent
Carbon	48,992	32.4412
Hydrogen	54,081	35.8110
Nitrogen	37,731	24.9844
Oxygen	10,214	6.7634
Totals	151,018	~100.00

GenBank Genome
Table: 6
(Alpaca)
**URL Link:** MZ708721.1

**Genome info for MZ708721.1**:

MZ708721 16503 bp DNA circular MAM 06-SEP-2021 Vicugna pacos mitochondrion
complete genome.

**Nucleotide count:** 16,503
Atom	Atom Count	Percent
Carbon	78,189	32.4047
Hydrogen	87,047	36.0758
Nitrogen	60,267	24.9771
Oxygen	15,786	6.5424
Totals	241,289	~100.00

GenBank Genome
Table: 7
(Alpaca)
**URL Link:** Y19184.1

**Genome info for Y19184.1**:

Y19184 16652 bp DNA circular MAM 26-JUL-2016 Lama pacos complete mitochondrial genome.

**Nucleotide count:** 16,652
Atom	Atom Count	Percent
Carbon	78,885	32.4020
Hydrogen	87,812	36.0688
Nitrogen	60,854	24.9958
Oxygen	15,906	6.5334
Totals	243,457	~100.00

GenBank Genome
Table: 8
(Alpaca)
**URL Link:** AC241827.2

**Genome info for AC241827.2**:

AC241827 179140 bp DNA linear HTG 30-JUL-2010 Vicugna pacos clone CH246-499H21 WORKING DRAFT SEQUENCE 5 ordered

**Nucleotide count:** 178,740
Non-Nucleotide Count: 400
Atom	Atom Count	Percent
Carbon	865,414	32.5987
Hydrogen	954,626	35.9592
Nitrogen	654,350	24.6483
Oxygen	180,359	6.7938
Totals	2,654,749	~100.00

GenBank Genome
Table: 9
(Alpaca)
**URL Link:** AC242466.1

**Genome info for AC242466.1**:

AC242466 180339 bp DNA linear HTG 14-SEP-2010 Vicugna pacos clone CH246-398M13 WORKING DRAFT SEQUENCE 10

**Nucleotide count:** 179,406
Non-Nucleotide Count: 933
Atom	Atom Count	Percent
Carbon	851,110	32.1612
Hydrogen	943,787	35.6632
Nitrogen	664,919	25.1255
Oxygen	186,575	7.0502
Totals	2,646,391	~100.00

GenBank Genome
Table: 10
(Alpaca)
**URL Link:** AC242467.3

**Genome info for AC242467.3**:

AC242467 189860 bp DNA linear HTG 14-JAN-2011 Vicugna pacos clone CH246-447B1 WORKING DRAFT SEQUENCE 4 ordered

**Nucleotide count:** 189,560
Non-Nucleotide Count: 300
Atom	Atom Count	Percent
Carbon	891,610	31.9850
Hydrogen	986,192	35.3780
Nitrogen	720,244	25.8376
Oxygen	189,540	6.7994
Totals	2,787,586	~100.00

GenBank Genome
Table: 11
(Gaur)
**URL Link:** MT345892.1

**Genome info for MT345892.1**:

MT345892 16345 bp DNA circular MAM 10-MAY-2020 Bos gaurus isolate GR01 mitochondrion
complete genome.

**Nucleotide count:** 16,345
Atom	Atom Count	Percent
Carbon	77,491	32.4379
Hydrogen	86,172	36.0718
Nitrogen	59,916	25.0810
Oxygen	15,311	6.4092
Totals	238,890	~100.00

GenBank Genome
Table: 12
(Gaur)
**URL Link:** MT345893.1

**Genome info for MT345893.1**:

MT345893 16345 bp DNA circular MAM 10-MAY-2020 Bos gaurus isolate GR02 mitochondrion
complete genome.

**Nucleotide count:** 16,345
Atom	Atom Count	Percent
Carbon	77,489	32.4376
Hydrogen	86,171	36.0720
Nitrogen	59,915	25.0810
Oxygen	15,311	6.4093
Totals	238,886	~100.00

GenBank Genome
Table: 13
(Gaur)
**URL Link:** MT360652.1

**Genome info for MT360652.1**:

MT360652 16345 bp DNA circular MAM 10-MAY-2020 Bos gaurus isolate GR03 mitochondrion
complete genome.

**Nucleotide count:** 16,345
Atom	Atom Count	Percent
Carbon	77,494	32.4380
Hydrogen	86,173	36.0709
Nitrogen	59,919	25.0813
Oxygen	15,313	6.4098
Totals	238,899	~100.00

GenBank Genome
Table: 14
(Gaur)
**URL Link:** MT360653.1

**Genome info for MT360653.1**:

MT360653 16345 bp DNA circular MAM 10-MAY-2020 Bos gaurus isolate GR04 mitochondrion
complete genome.

**Nucleotide count:** 16,345
Atom	Atom Count	Percent
Carbon	77,492	32.4378
Hydrogen	86,172	36.0712
Nitrogen	59,918	25.0814
Oxygen	15,312	6.4095
Totals	238,894	~100.00

GenBank Genome
Table: 15
(Gaur)
**URL Link:** MK770201.1

**Genome info for MK770201.1**:

MK770201 16367 bp DNA circular MAM 01-OCT-2019 Bos gaurus isolate S0029 mitochondrion
complete genome.

**Nucleotide count:** 16,367
Atom	Atom Count	Percent
Carbon	77,550	32.4306
Hydrogen	86,249	36.0684
Nitrogen	60,023	25.1010
Oxygen	15,304	6.4000
Totals	239,126	~100.00

GenBank Genome
Table: 16
(Polar bear)
**URL Link:** GU573485.1

**Genome info for GU573485.1**:

GU573485 16809 bp DNA circular MAM 25-JUL-2016 Ursus maritimus isolate 2629 mitochondrion
complete genome.

**Nucleotide count:** 16,808
Non-Nucleotide Count: 1
Atom	Atom Count	Percent
Carbon	79,743	32.3960
Hydrogen	88,720	36.0429
Nitrogen	61,406	24.9465
Oxygen	16,282	6.6146
Totals	246,151	~100.00

GenBank Genome
Table: 17
(Polar bear)
**URL Link:** GU573488.1

**Genome info for GU573488.1**:

GU573488 16898 bp DNA circular MAM 25-JUL-2016 Ursus maritimus mitochondrion
complete genome.

**Nucleotide count:** 16,898
Atom	Atom Count	Percent
Carbon	80,174	32.3958
Hydrogen	89,195	36.0409
Nitrogen	61,743	24.9484
Oxygen	16,371	6.6150
Totals	247,483	~100.00

GenBank Genome
Table: 18
(Polar bear)
**URL Link:** GU573490.1

**Genome info for GU573490.1**:

GU573490 16808 bp DNA circular MAM 25-JUL-2016 Ursus maritimus isolate 495 mitochondrion
complete genome.

**Nucleotide count:** 16,808
Atom	Atom Count	Percent
Carbon	79,749	32.3972
Hydrogen	88,725	36.0436
Nitrogen	61,403	24.9443
Oxygen	16,283	6.6148
Totals	246,160	~100.00

GenBank Genome
Table: 19
(Polar bear)
**URL Link:** OK001263.1

**Genome info for OK001263.1**:

OK001263 17020 bp DNA linear MAM 13-DEC-2021 Ursus maritimus voucher F-1863 mitochondrion
partial genome.

**Nucleotide count:** 17,020
Atom	Atom Count	Percent
Carbon	80,737	32.3911
Hydrogen	89,820	36.0351
Nitrogen	62,214	24.9598
Oxygen	16,486	6.6141
Totals	249,257	~100.00

GenBank Genome
Table: 20
(Polar bear)
**URL Link:** OK001270.1

**Genome info for OK001270.1**:

OK001270 17020 bp DNA linear MAM 13-DEC-2021 Ursus maritimus voucher FR-275 mitochondrion
partial genome.

**Nucleotide count:** 17,011
Non-Nucleotide Count: 9
Atom	Atom Count	Percent
Carbon	80,699	32.3919
Hydrogen	89,777	36.0358
Nitrogen	62,177	24.9574
Oxygen	16,480	6.6149
Totals	249,133	~100.00

**Interim Totals For Tables 1-20:**
(Total atom count: 11,764,972)
Atom Type	Atom Type Count	Low	High	Variation	Average
Carbon	3,800,254	31.9850	32.6501	0.6651%	32.3014%
Hydrogen	4,208,740	35.3780	36.0893	0.7113%	35.7735%
Nitrogen	2,958,108	24.5356	25.8376	1.3020%	25.1433%
Oxygen	797,870	6.4000	7.0502	0.6502%	6.7817%

GenBank Genome
Table: 21
(Sun bear)
**URL Link:** OQ564458.1

**Genome info for OQ564458.1**:

OQ564458 16769 bp DNA linear MAM 09-APR-2023 Helarctos malayanus mitochondrion
partial genome.

**Nucleotide count:** 16,440
Non-Nucleotide Count: 329
Atom	Atom Count	Percent
Carbon	77,986	32.4036
Hydrogen	86,768	36.0525
Nitrogen	60,068	24.9586
Oxygen	15,849	6.5853
Totals	240,671	~100.00

GenBank Genome
Table: 22
(Sun bear)
**URL Link:** OQ564459.1

**Genome info for OQ564459.1**:

OQ564459 16782 bp DNA circular MAM 09-APR-2023 Helarctos malayanus mitochondrion
complete genome.

**Nucleotide count:** 16,770
Non-Nucleotide Count: 12
Atom	Atom Count	Percent
Carbon	79,567	32.4021
Hydrogen	88,527	36.0509
Nitrogen	61,253	24.9441
Oxygen	16,214	6.6028
Totals	245,561	~100.00

GenBank Genome
Table: 23
(Sun bear)
**URL Link:** OQ564460.1

**Genome info for OQ564460.1**:

OQ564460 16764 bp DNA linear MAM 09-APR-2023 Helarctos malayanus mitochondrion
partial genome.

**Nucleotide count:** 16,095
Non-Nucleotide Count: 669
Atom	Atom Count	Percent
Carbon	76,317	32.3972
Hydrogen	84,933	36.0547
Nitrogen	58,785	24.9547
Oxygen	15,532	6.5935
Totals	235,567	~100.00

GenBank Genome
Table: 24
(Sun bear)
**URL Link:** OQ564461.1

**Genome info for OQ564461.1**:

OQ564461 16780 bp DNA linear MAM 09-APR-2023 Helarctos malayanus mitochondrion
partial genome.

**Nucleotide count:** 16,491
Non-Nucleotide Count: 289
Atom	Atom Count	Percent
Carbon	78,224	32.4036
Hydrogen	87,037	36.0543
Nitrogen	60,247	24.9568
Oxygen	15,897	6.5852
Totals	241,405	~100.00

GenBank Genome
Table: 25
(Sun bear)
**URL Link:** OQ564462.1

**Genome info for OQ564462.1**:

OQ564462 16779 bp DNA linear MAM 09-APR-2023 Helarctos malayanus mitochondrion
partial genome.

**Nucleotide count:** 16,267
Non-Nucleotide Count: 512
Atom	Atom Count	Percent
Carbon	77,144	32.3993
Hydrogen	85,852	36.0565
Nitrogen	59,402	24.9479
Oxygen	15,706	6.5963
Totals	238,104	~100.00

GenBank Genome
Table: 26
(Blackbuck)
**URL Link:** JN632598.1

**Genome info for JN632598.1**:

JN632598 16430 bp DNA circular MAM 19-JAN-2016 Antilope cervicapra isolate AWWP mitochondrion
complete genome.

**Nucleotide count:** 16,430
Atom	Atom Count	Percent
Carbon	77,889	32.4352
Hydrogen	86,582	36.0553
Nitrogen	60,332	25.1240
Oxygen	15,334	6.3855
Totals	240,137	~100.00

GenBank Genome
Table: 27
(Blackbuck)
**URL Link:** AP003422.1

**Genome info for AP003422.1**:

AP003422 16431 bp DNA circular MAM 24-JUL-2016 Antilope cervicapra mitochondrial DNA complete genome.

**Nucleotide count:** 16,431
Atom	Atom Count	Percent
Carbon	77,900	32.4377
Hydrogen	86,593	36.0574
Nitrogen	60,331	25.1219
Oxygen	15,329	6.3830
Totals	240,153	~100.00

GenBank Genome
Table: 28
(Black rat)
**URL Link:** CS694283.1

**Genome info for CS694283.1**:

CS694283 12525 bp DNA linear PAT 09-OCT-2007 Sequence 3 from Patent EP1820861.

**Nucleotide count:** 12,452
Non-Nucleotide Count: 73
Atom	Atom Count	Percent
Carbon	59,052	32.2044
Hydrogen	65,366	35.6478
Nitrogen	46,526	25.3733
Oxygen	12,422	6.7744
Totals	183,366	~100.00

GenBank Genome
Table: 29
(Black rat)
**URL Link:** BD440326.1

**Genome info for BD440326.1**:

BD440326 12178 bp DNA linear PAT 04-NOV-2005 Novel actin-related sytoskeletal protein LACS.

**Nucleotide count:** 12,178
Atom	Atom Count	Percent
Carbon	58,452	32.3857
Hydrogen	63,569	35.2208
Nitrogen	47,977	26.5820
Oxygen	10,489	5.8115
Totals	180,487	~100.00

GenBank Genome
Table: 30
(Black rat)
**URL Link:** BD442401.1

**Genome info for BD442401.1**:

BD442401 12525 bp DNA linear PAT 04-NOV-2005 C3B/C4B COMPLEMENT RECEPTOR-LIKE MOLECULES AND USES THEREOF.

**Nucleotide count:** 12,452
Non-Nucleotide Count: 73
Atom	Atom Count	Percent
Carbon	59,052	32.2044
Hydrogen	65,366	35.6478
Nitrogen	46,526	25.3733
Oxygen	12,422	6.7744
Totals	183,366	~100.00

GenBank Genome
Table: 31
(Black rat)
**URL Link:** AX374893.1

**Genome info for AX374893.1**:

AX374893 12525 bp DNA linear PAT 01-MAR-2002 Sequence 3 from Patent WO0210199.

**Nucleotide count:** 12,452
Non-Nucleotide Count: 73
Atom	Atom Count	Percent
Carbon	59,052	32.2044
Hydrogen	65,366	35.6478
Nitrogen	46,526	25.3733
Oxygen	12,422	6.7744
Totals	183,366	~100.00

GenBank Genome
Table: 32
(Black rat)
**URL Link:** HZ787264.1

**Genome info for HZ787264.1**:

HZ787264 30702 bp DNA linear PAT 29-JUN-2016 JP 2016505257-A/1: POLYNUCLEOTIDES ENCODING RODENT ANTIBODIES WITH

**Nucleotide count:** 30,652
Non-Nucleotide Count: 50
Atom	Atom Count	Percent
Carbon	145,439	32.1817
Hydrogen	160,541	35.5233
Nitrogen	115,775	25.6178
Oxygen	30,176	6.6771
Totals	451,931	~100.00

GenBank Genome
Table: 33
(Buffalo)
**URL Link:** OM868832.1

**Genome info for OM868832.1**:

OM868832 16357 bp DNA linear MAM 16-OCT-2022 UNVERIFIED: Bubalus bubalis isolate CG1 mitochondrion sequence.

**Nucleotide count:** 16,357
Atom	Atom Count	Percent
Carbon	77,441	32.4104
Hydrogen	86,111	36.0389
Nitrogen	60,119	25.1608
Oxygen	15,268	6.3899
Totals	238,939	~100.00

GenBank Genome
Table: 34
(Buffalo)
**URL Link:** OM868833.1

**Genome info for OM868833.1**:

OM868833 16357 bp DNA linear MAM 16-OCT-2022 UNVERIFIED: Bubalus bubalis isolate CG2 mitochondrion sequence.

**Nucleotide count:** 16,357
Atom	Atom Count	Percent
Carbon	77,440	32.4104
Hydrogen	86,110	36.0389
Nitrogen	60,120	25.1615
Oxygen	15,266	6.3892
Totals	238,936	~100.00

GenBank Genome
Table: 35
(Buffalo)
**URL Link:** OM868834.1

**Genome info for OM868834.1**:

OM868834 16357 bp DNA linear MAM 16-OCT-2022 UNVERIFIED: Bubalus bubalis isolate CG3 mitochondrion sequence.

**Nucleotide count:** 16,357
Atom	Atom Count	Percent
Carbon	77,440	32.4104
Hydrogen	86,110	36.0389
Nitrogen	60,120	25.1615
Oxygen	15,266	6.3892
Totals	238,936	~100.00

GenBank Genome
Table: 36
(Buffalo)
**URL Link:** OM868835.1

**Genome info for OM868835.1**:

OM868835 16357 bp DNA linear MAM 16-OCT-2022 UNVERIFIED: Bubalus bubalis isolate CG4 mitochondrion sequence.

**Nucleotide count:** 16,357
Atom	Atom Count	Percent
Carbon	77,441	32.4105
Hydrogen	86,111	36.0391
Nitrogen	60,119	25.1609
Oxygen	15,267	6.3895
Totals	238,938	~100.00

GenBank Genome
Table: 37
(Buffalo)
**URL Link:** OM868836.1

**Genome info for OM868836.1**:

OM868836 16357 bp DNA linear MAM 16-OCT-2022 UNVERIFIED: Bubalus bubalis isolate CG5 mitochondrion sequence.

**Nucleotide count:** 16,357
Atom	Atom Count	Percent
Carbon	77,441	32.4105
Hydrogen	86,111	36.0391
Nitrogen	60,119	25.1609
Oxygen	15,267	6.3895
Totals	238,938	~100.00

GenBank Genome
Table: 38
(Cat)
**URL Link:** OR077766.1

**Genome info for OR077766.1**:

OR077766 16437 bp DNA circular MAM 05-JUL-2023 Felis catus isolate Cat 104 mitochondrion
complete genome.

**Nucleotide count:** 16,437
Atom	Atom Count	Percent
Carbon	77,859	32.4134
Hydrogen	86,640	36.0690
Nitrogen	60,168	25.0485
Oxygen	15,539	6.4690
Totals	240,206	~100.00

GenBank Genome
Table: 39
(Cat)
**URL Link:** OR077767.1

**Genome info for OR077767.1**:

OR077767 16438 bp DNA circular MAM 05-JUL-2023 Felis catus isolate Cat 105 mitochondrion
complete genome.

**Nucleotide count:** 16,438
Atom	Atom Count	Percent
Carbon	77,867	32.4143
Hydrogen	86,647	36.0693
Nitrogen	60,173	25.0487
Oxygen	15,537	6.4677
Totals	240,224	~100.00

GenBank Genome
Table: 40
(Cat)
**URL Link:** OR077768.1

**Genome info for OR077768.1**:

OR077768 16437 bp DNA circular MAM 05-JUL-2023 Felis catus isolate Cat 106 mitochondrion
complete genome.

**Nucleotide count:** 16,437
Atom	Atom Count	Percent
Carbon	77,865	32.4151
Hydrogen	86,643	36.0694
Nitrogen	60,171	25.0491
Oxygen	15,533	6.4664
Totals	240,212	~100.00

**Interim Totals For Tables 21-40:**
(Total atom count: 4,779,443)
Atom Type	Atom Type Count	Low	High	Variation	Average
Carbon	1,546,868	32.1817	32.4377	0.2560%	32.3650%
Hydrogen	1,716,983	35.2208	36.0694	0.8486%	35.9243%
Nitrogen	1,204,857	24.9441	26.5820	1.6379%	25.2092%
Oxygen	310,735	5.8115	6.7744	0.9629%	6.5015%

No comments:

Post a Comment

Subscribe to: Post Comments (Atom)