Pangenome

We tend to think that the scientific data presented to the public is flawless each and every time, but it isn't:

"The human reference genome is the most widely used resource in human genetics and is due for a major update. Its current structure is a linear composite of merged haplotypes from more than 20 people, with a single individual comprising most of the sequence. It contains biases and errors within a framework that does not represent global human genomic variation."

(The Human Pangenome Project, Nature, 2020). But that does not mean the data cannot be improved upon.

That is what the "pangenome" project is all about (The Human Pangenome Reference Consortium).

In a recent series Dredd Blog took a gander at the MetaSUB project (the one that had taken a smorgasbord view of DNA residue at public places in "cities").

"Cities" are where most people now reside in countries all around the globe (MetaSUB, 2, 3, 4, 5, 6, 7).

The MetaSUB DNA data is likely to include Bat, Bird, Bacteria, Human, and other DNA samples mixed together, engendering "chimera" samples (ibid).

Anyway, today the table which was presented in MetaSUB-7 is updated to include the human Pangenome FASTA data as well as updated MetaSUB DNA because the previous MetaSUB data was mRNA due to my mistake.

The updated table:

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Australian, Egyptian, and Viking Mummy DNA
Compared To MetaSUB,
Pangenome & Other Modern Human DNA

Codon	Australia	Egypt	Human	MetaSUB	Pangenome	Viking
GCT	2.05%	1.51%	1.10%	0.25%	1.68%	2.06%
GCC	1.94%	2.32%	0.94%	4.27%	1.52%	2.00%
GCA	1.90%	2.03%	1.35%	2.52%	1.64%	1.97%
GCG	0.37%	2.29%	0.22%	4.52%	0.25%	0.36%
GCU	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
TGT	2.29%	1.43%	2.10%	0.44%	2.56%	2.17%
TGC	0.02%	0.13%	0.01%	0.03%	0.02%	0.03%
UGU	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
UGC	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
GAT	1.20%	2.62%	0.85%	0.31%	1.09%	1.10%
GAC	0.56%	0.88%	0.43%	0.56%	0.53%	0.69%
GAU	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
GAA	2.39%	2.90%	1.91%	6.40%	2.21%	2.42%
GAG	0.70%	0.50%	0.58%	0.38%	0.60%	0.74%
TTT	1.09%	0.43%	1.44%	0.03%	1.96%	1.16%
TTC	0.99%	0.67%	1.38%	0.21%	1.24%	1.06%
UUU	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
UUC	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
GGT	1.19%	0.93%	0.66%	0.27%	1.00%	1.07%
GGC	0.04%	0.14%	0.02%	0.66%	0.03%	0.04%
GGA	0.22%	0.29%	0.16%	0.13%	0.20%	0.26%
GGG	0.31%	0.40%	0.22%	0.49%	0.32%	0.38%
Codon	Australia	Egypt	Human	MetaSUB	Pangenome	Viking
GGU	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
CAT	0.61%	0.29%	0.71%	0.05%	0.68%	0.56%
CAC	1.24%	0.91%	0.89%	0.06%	0.97%	1.03%
CAU	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
ATT	0.22%	0.10%	0.21%	0.08%	0.35%	0.19%
ATC	0.41%	0.35%	0.42%	0.15%	0.47%	0.37%
ATA	0.27%	0.15%	0.34%	0.02%	0.51%	0.25%
AUU	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
AUC	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
AUA	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
AAA	1.34%	0.48%	1.24%	2.01%	1.59%	1.19%
AAG	0.22%	0.10%	0.16%	0.01%	0.22%	0.23%
CTT	0.36%	0.15%	0.21%	0.01%	0.42%	0.38%
CTC	1.08%	0.54%	0.70%	0.11%	0.96%	0.97%
CTA	0.24%	0.16%	0.27%	0.07%	0.32%	0.28%
CTG	0.22%	0.14%	0.13%	0.01%	0.21%	0.28%
TTA	0.12%	0.06%	0.13%	0.05%	0.19%	0.13%
TTG	0.10%	0.05%	0.06%	0.00%	0.08%	0.09%
CUU	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
CUC	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
CUA	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
CUG	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
Codon	Australia	Egypt	Human	MetaSUB	Pangenome	Viking
UUA	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
UUG	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
ATG	0.02%	0.01%	0.03%	0.00%	0.03%	0.02%
AUG	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
AAT	0.06%	0.03%	0.06%	0.00%	0.08%	0.05%
AAC	0.20%	0.19%	0.18%	0.04%	0.22%	0.22%
AAU	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
CCT	0.28%	0.12%	0.19%	0.44%	0.27%	0.31%
CCC	0.37%	0.26%	0.29%	0.02%	0.36%	0.41%
CCA	0.31%	0.21%	0.28%	0.03%	0.31%	0.37%
CCG	0.05%	0.26%	0.04%	0.11%	0.05%	0.08%
CCU	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
CAA	0.16%	0.11%	0.15%	0.02%	0.18%	0.16%
CAG	0.47%	0.16%	0.24%	0.02%	0.37%	0.43%
CGT	0.08%	0.37%	0.07%	0.10%	0.08%	0.10%
CGC	0.00%	0.06%	0.00%	0.00%	0.00%	0.00%
CGA	0.02%	0.14%	0.01%	0.01%	0.01%	0.01%
CGG	0.02%	0.12%	0.01%	0.02%	0.02%	0.03%
AGA	0.19%	0.24%	0.25%	0.18%	0.27%	0.22%
AGG	0.05%	0.03%	0.05%	0.00%	0.06%	0.07%
CGU	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
TCT	0.14%	0.37%	0.10%	0.44%	0.15%	0.16%
Codon	Australia	Egypt	Human	MetaSUB	Pangenome	Viking
TCC	0.09%	0.09%	0.07%	0.01%	0.10%	0.12%
TCA	0.15%	0.07%	0.10%	0.00%	0.13%	0.13%
TCG	0.03%	0.53%	0.02%	0.01%	0.02%	0.02%
AGT	0.13%	0.07%	0.09%	0.03%	0.14%	0.16%
AGC	0.00%	0.02%	0.00%	0.00%	0.00%	0.00%
UCU	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
UCC	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
UCA	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
UCG	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
AGU	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
ACT	0.14%	0.05%	0.09%	0.03%	0.13%	0.12%
ACC	0.11%	0.09%	0.06%	0.03%	0.08%	0.08%
ACA	0.12%	0.06%	0.12%	0.00%	0.14%	0.12%
ACG	0.01%	0.06%	0.02%	0.00%	0.02%	0.02%
ACU	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
GTT	0.06%	0.05%	0.03%	0.00%	0.04%	0.05%
GTC	0.04%	0.11%	0.03%	0.00%	0.04%	0.05%
GTA	0.05%	0.07%	0.04%	0.13%	0.06%	0.06%
GTG	0.11%	0.06%	0.06%	0.00%	0.07%	0.09%
GUU	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
GUC	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
GUA	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
Codon	Australia	Egypt	Human	MetaSUB	Pangenome	Viking
GUG	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
TGG	0.28%	0.11%	0.15%	1.99%	0.24%	0.27%
UGG	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
TAT	0.02%	0.01%	0.02%	0.00%	0.03%	0.01%
TAC	0.04%	0.04%	0.04%	0.01%	0.06%	0.05%
UAU	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
UAC	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
TAA	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
TAG	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
TGA	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
UAA	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
UAG	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%
UGA	0.00%	0.00%	0.00%	0.00%	0.00%	0.00%

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Closing Comments

The pop culture of the upper middle class and wealthy is wild about "ancestry".

But just as the hard-core-scientist-prepared GenBank and the like have errors in them, so do the pop culture data:

"Although some people purchase kits from multiple companies, the majority of people take just one test. Each person who buys genetic analysis from Ancestry, for example, consents to having his/her data become part of Ancestry’s enormous database, which is used to perform the analyses that people pay for. There are some interesting implications to how these databases are built.

First, they are primarily made up of paying customers, which means that the vast majority of genetic datasets in Ancestry’s database come from people who have enough disposable income to purchase the kit and analysis. It may not seem like an important detail, but it shows that the comparison population is not the same as the general population.

Second, because the analyses compare the sample DNA to DNA already in the database, it matters how many people from any given area have taken the test and are in the database. An article in Gizmodo describes one family’s experience with DNA testing and some of the pitfalls. The author quotes a representative from the company 23andMe as saying, “Different companies have different reference data sets and different algorithms, hence the variance in results. Middle Eastern reference populations [for example] are not as well represented as European, an industry-wide challenge.”

The same is true for any population where not many members have taken the test for a particular company. In an interview with NPR about trying to find information about her ancestry, journalist Alex Wagner described a similar problem, saying, “There are not a lot of Burmese people taking DNA tests … and so, the results that were returned were kind of nebulous.”

Wagner’s mother and grandmother both immigrated to the US from Burma in 1965, and when Wagner began investigating her ancestry, she, both of her parents, and her grandmother, all took tests from three different direct-to-consumer DNA testing companies. To Wagner’s surprise, her mother and grandmother both had results that showed they were Mongolian, but none of the results indicated Burmese heritage. In the interview she says that one of the biggest things she learned through doing all these tests was that “a lot of these DNA test companies [are] commercial enterprises. So, they basically purchase or acquire DNA samples on market-demand.”

As it turns out, there aren’t many Burmese people taking DNA tests, so there’s not much reason for the testing companies to pursue having a robust Burmese or even Southeast Asian database of DNA."

(The Problems with Ancestry DNA Analyses). Fortunately, non-genetic historical records such as obituaries and birth records diminish the uncertainty:

"Although it has been studied for many decades, DNA is not entirely understood. There could be significant SNPs that are not evaluated or recognized as important genetic markers. You also might not inherit certain genes that show your Scandinavian heritage even if your siblings have. Even with the best DNA testing, genes are tricky and cannot tell you everything about your family. Some companies (like Ancestry.com) incorporate the use of historical records to increase their ancestry DNA accuracy."

(GenomeLink). Even noted experts in the field disagree on DNA interpretations in various degrees (some of those degrees are hot):

"A New York laboratory has cut its ties with James Watson, the Nobel prize-winning scientist who helped discover the structure of DNA, over 'reprehensible' comments in which he said race and intelligence are connected.

The Cold Spring Harbor Laboratory said it was revoking all titles and honors conferred on Watson, 90, who led the lab for many years.

The lab 'unequivocally rejects the unsubstantiated and reckless personal opinions Dr James D Watson expressed on the subject of ethnicity and genetics', its president, Bruce Stillman, and chair of the board of trustees, Marilyn Simons, said in a statement.

'Dr Watson’s statements are reprehensible, unsupported by science, and in no way represent the views of CSHL, its trustees, faculty, staff, or students. The laboratory condemns the misuse of science to justify prejudice.'”

(Guardian, 2019). The bottom line is "don't bet the farm" on it until you do an exhaustive, detailed investigation.

The video below features experts who detail a lot of myths about DNA (genes) which are prevalent in various cultures.

The next post in this series is here.

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Seaports With Sea Level Change - 30

Fig. 1 CMA CGM Jules Verne

I. Background

Verbal patterns can be as interesting as cloud patterns, star patterns, and hand patterns (Square Finger 'Splainin').

Over the better part of the past couple of decades Dredd Blog has pointed out that in various scenarios one of the most often quoted descriptions of large-scale events is something like "worse than previously thought" (e.g. In Search Of Ocean Heat - 8, The Warming Science Commentariat - 12, Choose Your Trances Carefully - 7).

That media habit continues unabated in a recent report that included the phrase ("faster than previously thought"):

"Such high melt rates concentrated in kilometer-wide grounding zones contrast with the traditional plume model of grounding line melt which predicts zero melt. High rates of simulated basal melting in grounded glacier ice in numerical models will increase the glacier sensitivity to ocean warming and potentially double projections of sea level rise ... Our results have vast implications for the modeling of glaciers terminating in ocean waters." 

(Melt rates in the kilometer-size grounding zone of Petermann Glacier, Greenland, before and during a retreat, PNAS, emphasis added). Not only that, it impacts sea level fall near an ice sheet, which means more than "potentially double projections of sea level rise" in those places when that falling sea level sea water is relocated to (nearer to the equator) by the Earth's gravity, rotation, etc.

The common myth that the impact of sea level change is mainly going to happen to people who live along the coastlines is a diversion from the fact that "more than 95 percent of U.S. international trade moves through the nation's ports and harbors" (NOAA Ports).

That common myth arises from not only the mass media, but also from scientists who are guided by funding and management to "not scare people" (The Extinction of Robust Sea Ports, 2015);

It is not only the media and sleepy scientists who deceive the public, no, business people influence others to act dangerously because those business people prefer ungodly riches over safe harbors of many kinds:

"An influential shipping industry group has quietly warned shippers to think carefully before they sign up for a new plan to reduce pollution and eventually eliminate their contribution to climate change.

The International Chamber of Shipping represents four fifths of the world’s commercial fleet, and in 2021 committed to the Paris Agreement’s target to reduce greenhouse gases down to zero by 2050. “Talk is cheap, action is difficult,” chairman Esben Poulsson said at the time.

But a confidential document obtained by The Associated Press shows the International Chamber of Shipping advised its national branches in March that member companies should 'give careful consideration to the possible implications' before committing to a new plan to reduce maritime emissions."

(AP news, emphasis added). Good on AP news for reporting that.

We can and must all change for the better under the appropriate conditions.

The demise of civilizations has always come about by coordinated efforts by leaders such as the International Chamber of Shipping, urging others to go in a wrong direction (How To Identify The Despotic Minority - 14).

And they are rewarded, in the moment, by cohorts, as they secretly plot otherwise, such as intending "to accelerate the production, transport and use of low-carbon fuels that will be transported by shipping for the world" (ibid).

"Low carbon" is a term used by those who "can't see the forest for the trees", because it's the cumulative amount of carbon used that is causing global warming induced climate change, not the number of carbon atoms in a gallon or liter.

The world population is increasing, so the only way to decrease the amount of greenhouse gases is to stop using carbon containing/polluting substances.

That is, decreasing the amount of carbon per gallon is overcome by the increasing number of gallons used by a growing population (in our current situation).

Thus, the focus must stay on the amount of greenhouse gasses we emit into our atmosphere, and keeping that quantity to a constantly declining amount.

II. Ghostery

The paper just published and quoted from above ("Melt rates in the kilometer-size grounding zone") indicates that melt-rate software models set the parameter for the melt-rate at the grounding line to zero:

"Most ice sheet models employ parameterization of ice melt that assumes zero melt at a grounding line that does not migrate with tides. It has been especially recommended not to apply melt in model mesh elements that cross the grounding line.Prior modeling studies have questioned the assumption of a grounding line with zero melt." 

[so it is no mystery at all why the result they produce is also zero]

"Such high melt rates concentrated in kilometer-wide grounding zones contrast with the traditional plume model of grounding line melt which predicts zero melt."

(ibid). That is one reason Dredd Blog has used the word "ghost water" to refer to the massive amounts of melt taking place at or near the grounding line (The Ghost Plumes, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15; The Ghost Photons, 2, 3; The Ghost-Water Constant, 2, 3, 4, 5, 6, 7, 8, 9).

Eventually NASA cleared up the issue by confirming the phenomenon (NASA Busts The Ghost).

Anyway, in the series "The Ghost Photons" Dredd Blog pointed out that one of the problems the current oceanographers have is that they do not use quantum mechanics nor the current oceanographic standard (TEOS-10) when calculating the thermodynamics of heat flow from seawater into tidewater glaciers.

This problem was further elaborated on in another Dredd Blog series (Quantum Oceanography, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16).

The oceanographers have in the past generally mislead business officials, such as those who influence actions of shipping company executives (International Chamber of Shipping), mentioned in Section I above.

III. Closing Comments

A recent Bureau of Atomic Scientists proclamation, when they were moving the settings of "The Doomsday Clock", fingered the media (including the oceanography media) as actors in the existential threats to civilization:

"On 20 January 2022, the Bulletin of the Atomic Scientists set their infamous Doomsday Clock at 100 seconds to midnight for the third year running. Their accompanying report — entitled ‘At Doom’s Doorstep’ — identified three key factors which brought humanity “the closest it has ever been to civilisation-ending apocalypse.

Two of these factors are unlikely to surprise many readers: namely, climate change and the growing threat of nuclear war. The third might be a little surprising: 'a corrupted information ecosphere that undermines rational decision-making'. Though some media outlets do deal with the concentration of media influence, this is rarely seen as an existential threat."

(Humble Oil-Qaeda - 3, quoting Professor Chomsky, 2023). Yes, bad information in the form of pabulum is an existential threat.

But well before existence is extinguished, it is likely that the sea ports will fail.

The next post in this series is here, the previous post in this series is here.

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MetaSUB - 7

At Da lab

Let's have some fun with DNA.

The following HTML table shows the percentage of DNA codons in ancient Australians, ancient Egyptians, and ancient Vikings.

It also compares those "mummies" with modern DNA from the MetaSUB project and from GenBank human mitochondrial DNA.

Just for laughs, let's pretend we are scientists wondering how ancient people got to Australia ("The time of arrival of people in Australia is an unresolved question"). 

But, because in our group are some geneticists who notice that the closest matches, percentage-wise, are Australian and Vikings.

Thus, they say, Vikings must have taken the ancient folks to Australia, and since it was such a long trip, along the way they "mingled" with the women that they took there.

And since the Human, Egyptian, and MetaSUB mismatch so much, that proves there are aliens among us (note that the MetaSUB was calculated with mRNA instead of DNA - see Pangenome for the update).

This really is the way some geneticists dream up hypotheses and theories (see the video at the bottom of this post).

The individual groups are presented in the HTML tables following the combined one in the first HTML table below.

The previous post in this series is here.

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Australian, Egyptian, and Viking Mummy DNA
Compared To MetaSUB
And Modern Human DNA

Codon	Australia	Egypt	Human	MetaSUB	Viking
GCT	2.05%	1.51%	1.10%	0.00%	2.06%
GCC	1.94%	2.32%	0.94%	4.27%	2.00%
GCA	1.90%	2.03%	1.35%	2.52%	1.97%
GCG	0.37%	2.29%	0.22%	4.52%	0.36%
GCU	0.00%	0.00%	0.00%	0.25%	0.00%
TGT	2.29%	1.43%	2.10%	0.00%	2.17%
TGC	0.02%	0.13%	0.01%	0.00%	0.03%
UGU	0.00%	0.00%	0.00%	0.44%	0.00%
UGC	0.00%	0.00%	0.00%	0.03%	0.00%
GAT	1.20%	2.62%	0.85%	0.00%	1.10%
GAC	0.56%	0.88%	0.43%	0.56%	0.69%
GAU	0.00%	0.00%	0.00%	0.31%	0.00%
GAA	2.39%	2.90%	1.91%	6.40%	2.42%
GAG	0.70%	0.50%	0.58%	0.38%	0.74%
TTT	1.09%	0.43%	1.44%	0.00%	1.16%
TTC	0.99%	0.67%	1.38%	0.00%	1.06%
UUU	0.00%	0.00%	0.00%	0.03%	0.00%
UUC	0.00%	0.00%	0.00%	0.21%	0.00%
GGT	1.19%	0.93%	0.66%	0.00%	1.07%
GGC	0.04%	0.14%	0.02%	0.66%	0.04%
GGA	0.22%	0.29%	0.16%	0.13%	0.26%
GGG	0.31%	0.40%	0.22%	0.63%	0.38%
GGU	0.00%	0.00%	0.00%	0.12%	0.00%
CAT	0.61%	0.29%	0.71%	0.00%	0.56%
CAC	1.24%	0.91%	0.89%	0.06%	1.03%
CAU	0.00%	0.00%	0.00%	0.05%	0.00%
ATT	0.22%	0.10%	0.21%	0.00%	0.19%
ATC	0.41%	0.35%	0.42%	0.00%	0.37%
ATA	0.27%	0.15%	0.34%	0.00%	0.25%
AUU	0.00%	0.00%	0.00%	0.08%	0.00%
AUC	0.00%	0.00%	0.00%	0.15%	0.00%
AUA	0.00%	0.00%	0.00%	0.02%	0.00%
AAA	1.34%	0.48%	1.24%	2.01%	1.19%
AAG	0.22%	0.10%	0.16%	0.01%	0.23%
CTT	0.36%	0.15%	0.21%	0.00%	0.38%
CTC	1.08%	0.54%	0.70%	0.00%	0.97%
CTA	0.24%	0.16%	0.27%	0.00%	0.28%
CTG	0.22%	0.14%	0.13%	0.00%	0.28%
TTA	0.12%	0.06%	0.13%	0.00%	0.13%
TTG	0.10%	0.05%	0.06%	0.00%	0.09%
CUU	0.00%	0.00%	0.00%	0.01%	0.00%
CUC	0.00%	0.00%	0.00%	0.11%	0.00%
CUA	0.00%	0.00%	0.00%	0.07%	0.00%
CUG	0.00%	0.00%	0.00%	0.01%	0.00%
UUA	0.00%	0.00%	0.00%	0.05%	0.00%
UUG	0.00%	0.00%	0.00%	0.00%	0.00%
ATG	0.02%	0.01%	0.03%	0.00%	0.02%
AUG	0.00%	0.00%	0.00%	0.00%	0.00%
AAT	0.06%	0.03%	0.06%	0.00%	0.05%
AAC	0.20%	0.19%	0.18%	0.04%	0.22%
AAU	0.00%	0.00%	0.00%	0.00%	0.00%
CCT	0.28%	0.12%	0.19%	0.00%	0.31%
CCC	0.37%	0.26%	0.29%	0.45%	0.41%
CCA	0.31%	0.21%	0.28%	0.03%	0.37%
CCG	0.05%	0.26%	0.04%	0.11%	0.08%
CCU	0.00%	0.00%	0.00%	0.02%	0.00%
CAA	0.16%	0.11%	0.15%	0.02%	0.16%
CAG	0.47%	0.16%	0.24%	0.02%	0.43%
CGT	0.08%	0.37%	0.07%	0.00%	0.10%
CGC	0.00%	0.06%	0.00%	0.00%	0.00%
CGA	0.02%	0.14%	0.01%	0.01%	0.01%
CGG	0.02%	0.12%	0.01%	0.02%	0.03%
AGA	0.19%	0.24%	0.25%	0.18%	0.22%
AGG	0.05%	0.03%	0.05%	0.00%	0.07%
CGU	0.00%	0.00%	0.00%	0.10%	0.00%
TCT	0.14%	0.37%	0.10%	0.00%	0.16%
TCC	0.09%	0.09%	0.07%	0.00%	0.12%
TCA	0.15%	0.07%	0.10%	0.00%	0.13%
TCG	0.03%	0.53%	0.02%	0.00%	0.02%
AGT	0.13%	0.07%	0.09%	0.00%	0.16%
AGC	0.00%	0.02%	0.00%	0.00%	0.00%
UCU	0.00%	0.00%	0.00%	0.44%	0.00%
UCC	0.00%	0.00%	0.00%	0.01%	0.00%
UCA	0.00%	0.00%	0.00%	0.00%	0.00%
UCG	0.00%	0.00%	0.00%	0.01%	0.00%
AGU	0.00%	0.00%	0.00%	0.03%	0.00%
ACT	0.14%	0.05%	0.09%	0.00%	0.12%
ACC	0.11%	0.09%	0.06%	0.03%	0.08%
ACA	0.12%	0.06%	0.12%	0.00%	0.12%
ACG	0.01%	0.06%	0.02%	0.00%	0.02%
ACU	0.00%	0.00%	0.00%	0.03%	0.00%
GTT	0.06%	0.05%	0.03%	0.00%	0.05%
GTC	0.04%	0.11%	0.03%	0.00%	0.05%
GTA	0.05%	0.07%	0.04%	0.00%	0.06%
GTG	0.11%	0.06%	0.06%	0.00%	0.09%
GUU	0.00%	0.00%	0.00%	0.00%	0.00%
GUC	0.00%	0.00%	0.00%	0.00%	0.00%
GUA	0.00%	0.00%	0.00%	0.13%	0.00%
GUG	0.00%	0.00%	0.00%	0.00%	0.00%
TGG	0.28%	0.11%	0.15%	0.00%	0.27%
UGG	0.00%	0.00%	0.00%	1.99%	0.00%
TAT	0.02%	0.01%	0.02%	0.00%	0.01%
TAC	0.04%	0.04%	0.04%	0.00%	0.05%
UAU	0.00%	0.00%	0.00%	0.00%	0.00%
UAC	0.00%	0.00%	0.00%	0.01%	0.00%
TAA	0.00%	0.00%	0.00%	0.00%	0.00%
TAG	0.00%	0.00%	0.00%	0.00%	0.00%
TGA	0.00%	0.00%	0.00%	0.00%	0.00%
UAA	0.00%	0.00%	0.00%	0.00%	0.00%
UAG	0.00%	0.00%	0.00%	0.00%	0.00%
UGA	0.00%	0.00%	0.00%	0.00%	0.00%

---

DNA type: Australia (ancient)
Nucleotides = 16,251,079
Out of Frame = 2,847,907
Codon counts:

GCT: 333,824 (2.05%)
GCC: 315,571 (1.94%)
GCA: 308,513 (1.90%)
GCG: 59,884 (0.37%)
GCU: 0 (0.00%)
TGT: 372,261 (2.29%)
TGC: 3,695 (0.02%)
UGU: 0 (0.00%)
UGC: 0 (0.00%)
GAT: 194,505 (1.20%)
GAC: 91,114 (0.56%)
GAU: 0 (0.00%)
GAA: 387,789 (2.39%)
GAG: 113,573 (0.70%)
TTT: 176,707 (1.09%)
TTC: 160,410 (0.99%)
UUU: 0 (0.00%)
UUC: 0 (0.00%)
GGT: 192,824 (1.19%)
GGC: 6,001 (0.04%)
GGA: 35,979 (0.22%)
GGG: 50,648 (0.31%)
GGU: 0 (0.00%)
CAT: 98,932 (0.61%)
CAC: 201,026 (1.24%)
CAU: 0 (0.00%)
ATT: 35,242 (0.22%)
ATC: 65,862 (0.41%)
ATA: 44,637 (0.27%)
AUU: 0 (0.00%)
AUC: 0 (0.00%)
AUA: 0 (0.00%)
AAA: 217,137 (1.34%)
AAG: 35,698 (0.22%)
CTT: 59,286 (0.36%)
CTC: 174,836 (1.08%)
CTA: 38,916 (0.24%)
CTG: 35,230 (0.22%)
TTA: 19,247 (0.12%)
TTG: 16,006 (0.10%)
CUU: 0 (0.00%)
CUC: 0 (0.00%)
CUA: 0 (0.00%)
CUG: 0 (0.00%)
UUA: 0 (0.00%)
UUG: 0 (0.00%)
ATG: 3,950 (0.02%)
AUG: 0 (0.00%)
AAT: 9,378 (0.06%)
AAC: 32,808 (0.20%)
AAU: 0 (0.00%)
CCT: 45,117 (0.28%)
CCC: 60,808 (0.37%)
CCA: 50,524 (0.31%)
CCG: 8,825 (0.05%)
CCU: 0 (0.00%)
CAA: 26,499 (0.16%)
CAG: 76,868 (0.47%)
CGT: 13,292 (0.08%)
CGC: 649 (0.00%)
CGA: 2,633 (0.02%)
CGG: 3,517 (0.02%)
AGA: 31,512 (0.19%)
AGG: 8,846 (0.05%)
CGU: 0 (0.00%)
TCT: 22,403 (0.14%)
TCC: 15,154 (0.09%)
TCA: 24,591 (0.15%)
TCG: 5,202 (0.03%)
AGT: 20,646 (0.13%)
AGC: 368 (0.00%)
UCU: 0 (0.00%)
UCC: 0 (0.00%)
UCA: 0 (0.00%)
UCG: 0 (0.00%)
AGU: 0 (0.00%)
ACT: 22,832 (0.14%)
ACC: 17,754 (0.11%)
ACA: 18,903 (0.12%)
ACG: 2,350 (0.01%)
ACU: 0 (0.00%)
GTT: 9,885 (0.06%)
GTC: 6,781 (0.04%)
GTA: 7,352 (0.05%)
GTG: 17,682 (0.11%)
GUU: 0 (0.00%)
GUC: 0 (0.00%)
GUA: 0 (0.00%)
GUG: 0 (0.00%)
TGG: 46,068 (0.28%)
UGG: 0 (0.00%)
TAT: 2,578 (0.02%)
TAC: 6,596 (0.04%)
UAU: 0 (0.00%)
UAC: 0 (0.00%)
TAA: 0 (0.00%)
TAG: 0 (0.00%)
TGA: 0 (0.00%)
UAA: 0 (0.00%)
UAG: 0 (0.00%)
UGA: 0 (0.00%)

---

DNA type: Egypt (ancient)
Nucleotides = 17,506,756
Out of Frame = 3,279,115
Codon counts:

GCT: 264,423 (1.51%)
GCC: 406,405 (2.32%)
GCA: 354,753 (2.03%)
GCG: 401,169 (2.29%)
GCU: 0 (0.00%)
TGT: 250,048 (1.43%)
TGC: 23,482 (0.13%)
UGU: 0 (0.00%)
UGC: 0 (0.00%)
GAT: 458,875 (2.62%)
GAC: 153,319 (0.88%)
GAU: 0 (0.00%)
GAA: 507,423 (2.90%)
GAG: 86,866 (0.50%)
TTT: 74,417 (0.43%)
TTC: 118,136 (0.67%)
UUU: 0 (0.00%)
UUC: 0 (0.00%)
GGT: 162,048 (0.93%)
GGC: 25,018 (0.14%)
GGA: 51,339 (0.29%)
GGG: 70,682 (0.40%)
GGU: 0 (0.00%)
CAT: 50,008 (0.29%)
CAC: 159,264 (0.91%)
CAU: 0 (0.00%)
ATT: 17,209 (0.10%)
ATC: 61,698 (0.35%)
ATA: 26,132 (0.15%)
AUU: 0 (0.00%)
AUC: 0 (0.00%)
AUA: 0 (0.00%)
AAA: 83,242 (0.48%)
AAG: 17,591 (0.10%)
CTT: 26,916 (0.15%)
CTC: 94,554 (0.54%)
CTA: 28,380 (0.16%)
CTG: 24,742 (0.14%)
TTA: 10,909 (0.06%)
TTG: 7,904 (0.05%)
CUU: 0 (0.00%)
CUC: 0 (0.00%)
CUA: 0 (0.00%)
CUG: 0 (0.00%)
UUA: 0 (0.00%)
UUG: 0 (0.00%)
ATG: 1,747 (0.01%)
AUG: 0 (0.00%)
AAT: 4,535 (0.03%)
AAC: 32,410 (0.19%)
AAU: 0 (0.00%)
CCT: 20,816 (0.12%)
CCC: 45,266 (0.26%)
CCA: 37,116 (0.21%)
CCG: 45,302 (0.26%)
CCU: 0 (0.00%)
CAA: 19,494 (0.11%)
CAG: 28,171 (0.16%)
CGT: 65,489 (0.37%)
CGC: 10,109 (0.06%)
CGA: 24,159 (0.14%)
CGG: 20,996 (0.12%)
AGA: 41,354 (0.24%)
AGG: 4,747 (0.03%)
CGU: 0 (0.00%)
TCT: 65,354 (0.37%)
TCC: 15,427 (0.09%)
TCA: 12,084 (0.07%)
TCG: 93,251 (0.53%)
AGT: 11,532 (0.07%)
AGC: 3,244 (0.02%)
UCU: 0 (0.00%)
UCC: 0 (0.00%)
UCA: 0 (0.00%)
UCG: 0 (0.00%)
AGU: 0 (0.00%)
ACT: 7,881 (0.05%)
ACC: 15,262 (0.09%)
ACA: 11,295 (0.06%)
ACG: 10,175 (0.06%)
ACU: 0 (0.00%)
GTT: 8,498 (0.05%)
GTC: 20,074 (0.11%)
GTA: 12,420 (0.07%)
GTG: 9,762 (0.06%)
GUU: 0 (0.00%)
GUC: 0 (0.00%)
GUA: 0 (0.00%)
GUG: 0 (0.00%)
TGG: 19,665 (0.11%)
UGG: 0 (0.00%)
TAT: 1,151 (0.01%)
TAC: 6,809 (0.04%)
UAU: 0 (0.00%)
UAC: 0 (0.00%)
TAA: 0 (0.00%)
TAG: 0 (0.00%)
TGA: 0 (0.00%)
UAA: 0 (0.00%)
UAG: 0 (0.00%)
UGA: 0 (0.00%)

---

DNA type: Human (modern @laboratory)
Nucleotides = 346,893
Out of Frame = 120,626
Codon counts:

GCT: 3,825 (1.10%)
GCC: 3,271 (0.94%)
GCA: 4,698 (1.35%)
GCG: 759 (0.22%)
GCU: 0 (0.00%)
TGT: 7,273 (2.10%)
TGC: 47 (0.01%)
UGU: 0 (0.00%)
UGC: 0 (0.00%)
GAT: 2,943 (0.85%)
GAC: 1,504 (0.43%)
GAU: 0 (0.00%)
GAA: 6,613 (1.91%)
GAG: 2,007 (0.58%)
TTT: 4,997 (1.44%)
TTC: 4,804 (1.38%)
UUU: 0 (0.00%)
UUC: 0 (0.00%)
GGT: 2,297 (0.66%)
GGC: 59 (0.02%)
GGA: 545 (0.16%)
GGG: 760 (0.22%)
GGU: 0 (0.00%)
CAT: 2,472 (0.71%)
CAC: 3,100 (0.89%)
CAU: 0 (0.00%)
ATT: 723 (0.21%)
ATC: 1,465 (0.42%)
ATA: 1,173 (0.34%)
AUU: 0 (0.00%)
AUC: 0 (0.00%)
AUA: 0 (0.00%)
AAA: 4,305 (1.24%)
AAG: 570 (0.16%)
CTT: 720 (0.21%)
CTC: 2,442 (0.70%)
CTA: 937 (0.27%)
CTG: 461 (0.13%)
TTA: 449 (0.13%)
TTG: 203 (0.06%)
CUU: 0 (0.00%)
CUC: 0 (0.00%)
CUA: 0 (0.00%)
CUG: 0 (0.00%)
UUA: 0 (0.00%)
UUG: 0 (0.00%)
ATG: 103 (0.03%)
AUG: 0 (0.00%)
AAT: 195 (0.06%)
AAC: 613 (0.18%)
AAU: 0 (0.00%)
CCT: 665 (0.19%)
CCC: 999 (0.29%)
CCA: 966 (0.28%)
CCG: 154 (0.04%)
CCU: 0 (0.00%)
CAA: 520 (0.15%)
CAG: 816 (0.24%)
CGT: 227 (0.07%)
CGC: 6 (0.00%)
CGA: 30 (0.01%)
CGG: 50 (0.01%)
AGA: 861 (0.25%)
AGG: 174 (0.05%)
CGU: 0 (0.00%)
TCT: 364 (0.10%)
TCC: 240 (0.07%)
TCA: 338 (0.10%)
TCG: 64 (0.02%)
AGT: 311 (0.09%)
AGC: 2 (0.00%)
UCU: 0 (0.00%)
UCC: 0 (0.00%)
UCA: 0 (0.00%)
UCG: 0 (0.00%)
AGU: 0 (0.00%)
ACT: 302 (0.09%)
ACC: 211 (0.06%)
ACA: 430 (0.12%)
ACG: 55 (0.02%)
ACU: 0 (0.00%)
GTT: 100 (0.03%)
GTC: 104 (0.03%)
GTA: 150 (0.04%)
GTG: 196 (0.06%)
GUU: 0 (0.00%)
GUC: 0 (0.00%)
GUA: 0 (0.00%)
GUG: 0 (0.00%)
TGG: 534 (0.15%)
UGG: 0 (0.00%)
TAT: 59 (0.02%)
TAC: 146 (0.04%)
UAU: 0 (0.00%)
UAC: 0 (0.00%)
TAA: 2 (0.00%)
TAG: 0 (0.00%)
TGA: 0 (0.00%)
UAA: 0 (0.00%)
UAG: 0 (0.00%)
UGA: 0 (0.00%)

---

DNA type: MetaSUB (city public places)
Nucleotides = 1,357,395
Out of Frame = 225,948
Codon counts:

GCT: 0 (0.00%)
GCC: 57,897 (4.27%)
GCA: 34,185 (2.52%)
GCG: 61,388 (4.52%)
GCU: 3,428 (0.25%)
TGT: 0 (0.00%)
TGC: 0 (0.00%)
UGU: 6,034 (0.44%)
UGC: 439 (0.03%)
GAT: 0 (0.00%)
GAC: 7,655 (0.56%)
GAU: 4,213 (0.31%)
GAA: 86,820 (6.40%)
GAG: 5,209 (0.38%)
TTT: 0 (0.00%)
TTC: 0 (0.00%)
UUU: 449 (0.03%)
UUC: 2,814 (0.21%)
GGT: 0 (0.00%)
GGC: 8,953 (0.66%)
GGA: 1,719 (0.13%)
GGG: 8,594 (0.63%)
GGU: 1,650 (0.12%)
CAT: 0 (0.00%)
CAC: 859 (0.06%)
CAU: 625 (0.05%)
ATT: 0 (0.00%)
ATC: 0 (0.00%)
ATA: 0 (0.00%)
AUU: 1,135 (0.08%)
AUC: 2,048 (0.15%)
AUA: 260 (0.02%)
AAA: 27,219 (2.01%)
AAG: 154 (0.01%)
CTT: 0 (0.00%)
CTC: 0 (0.00%)
CTA: 0 (0.00%)
CTG: 0 (0.00%)
TTA: 0 (0.00%)
TTG: 0 (0.00%)
CUU: 134 (0.01%)
CUC: 1,485 (0.11%)
CUA: 1,006 (0.07%)
CUG: 126 (0.01%)
UUA: 639 (0.05%)
UUG: 9 (0.00%)
ATG: 0 (0.00%)
AUG: 6 (0.00%)
AAT: 0 (0.00%)
AAC: 573 (0.04%)
AAU: 4 (0.00%)
CCT: 0 (0.00%)
CCC: 6,123 (0.45%)
CCA: 423 (0.03%)
CCG: 1,545 (0.11%)
CCU: 229 (0.02%)
CAA: 212 (0.02%)
CAG: 247 (0.02%)
CGT: 0 (0.00%)
CGC: 0 (0.00%)
CGA: 88 (0.01%)
CGG: 240 (0.02%)
AGA: 2,482 (0.18%)
AGG: 7 (0.00%)
CGU: 1,380 (0.10%)
TCT: 0 (0.00%)
TCC: 0 (0.00%)
TCA: 0 (0.00%)
TCG: 0 (0.00%)
AGT: 0 (0.00%)
AGC: 1 (0.00%)
UCU: 6,013 (0.44%)
UCC: 171 (0.01%)
UCA: 55 (0.00%)
UCG: 104 (0.01%)
AGU: 363 (0.03%)
ACT: 0 (0.00%)
ACC: 349 (0.03%)
ACA: 25 (0.00%)
ACG: 15 (0.00%)
ACU: 362 (0.03%)
GTT: 0 (0.00%)
GTC: 0 (0.00%)
GTA: 0 (0.00%)
GTG: 0 (0.00%)
GUU: 30 (0.00%)
GUC: 24 (0.00%)
GUA: 1,742 (0.13%)
GUG: 11 (0.00%)
TGG: 0 (0.00%)
UGG: 26,994 (1.99%)
TAT: 0 (0.00%)
TAC: 0 (0.00%)
UAU: 2 (0.00%)
UAC: 176 (0.01%)
TAA: 0 (0.00%)
TAG: 0 (0.00%)
TGA: 0 (0.00%)
UAA: 0 (0.00%)
UAG: 0 (0.00%)
UGA: 7 (0.00%)

---

DNA type: Viking (ancient)
Nucleotides = 1,073,506,904
Out of Frame = 188,339,423
Codon counts:

GCT: 22,131,265 (2.06%)
GCC: 21,516,999 (2.00%)
GCA: 21,194,650 (1.97%)
GCG: 3,915,623 (0.36%)
GCU: 0 (0.00%)
TGT: 23,290,278 (2.17%)
TGC: 312,880 (0.03%)
UGU: 0 (0.00%)
UGC: 0 (0.00%)
GAT: 11,801,428 (1.10%)
GAC: 7,362,939 (0.69%)
GAU: 0 (0.00%)
GAA: 26,028,899 (2.42%)
GAG: 7,905,229 (0.74%)
TTT: 12,506,124 (1.16%)
TTC: 11,428,779 (1.06%)
UUU: 0 (0.00%)
UUC: 0 (0.00%)
GGT: 11,490,635 (1.07%)
GGC: 386,550 (0.04%)
GGA: 2,823,311 (0.26%)
GGG: 4,112,333 (0.38%)
GGU: 0 (0.00%)
CAT: 6,064,034 (0.56%)
CAC: 11,039,403 (1.03%)
CAU: 0 (0.00%)
ATT: 2,026,644 (0.19%)
ATC: 3,996,467 (0.37%)
ATA: 2,666,988 (0.25%)
AUU: 0 (0.00%)
AUC: 0 (0.00%)
AUA: 0 (0.00%)
AAA: 12,793,731 (1.19%)
AAG: 2,426,922 (0.23%)
CTT: 4,065,784 (0.38%)
CTC: 10,372,981 (0.97%)
CTA: 3,014,003 (0.28%)
CTG: 2,973,702 (0.28%)
TTA: 1,430,568 (0.13%)
TTG: 991,040 (0.09%)
CUU: 0 (0.00%)
CUC: 0 (0.00%)
CUA: 0 (0.00%)
CUG: 0 (0.00%)
UUA: 0 (0.00%)
UUG: 0 (0.00%)
ATG: 224,972 (0.02%)
AUG: 0 (0.00%)
AAT: 500,181 (0.05%)
AAC: 2,367,168 (0.22%)
AAU: 0 (0.00%)
CCT: 3,362,909 (0.31%)
CCC: 4,441,582 (0.41%)
CCA: 3,948,427 (0.37%)
CCG: 844,512 (0.08%)
CCU: 0 (0.00%)
CAA: 1,732,442 (0.16%)
CAG: 4,669,716 (0.43%)
CGT: 1,082,491 (0.10%)
CGC: 49,993 (0.00%)
CGA: 155,888 (0.01%)
CGG: 351,766 (0.03%)
AGA: 2,411,371 (0.22%)
AGG: 740,961 (0.07%)
CGU: 0 (0.00%)
TCT: 1,698,673 (0.16%)
TCC: 1,253,167 (0.12%)
TCA: 1,365,858 (0.13%)
TCG: 256,937 (0.02%)
AGT: 1,691,463 (0.16%)
AGC: 50,437 (0.00%)
UCU: 0 (0.00%)
UCC: 0 (0.00%)
UCA: 0 (0.00%)
UCG: 0 (0.00%)
AGU: 0 (0.00%)
ACT: 1,276,020 (0.12%)
ACC: 851,175 (0.08%)
ACA: 1,275,031 (0.12%)
ACG: 202,466 (0.02%)
ACU: 0 (0.00%)
GTT: 569,495 (0.05%)
GTC: 539,632 (0.05%)
GTA: 605,214 (0.06%)
GTG: 918,820 (0.09%)
GUU: 0 (0.00%)
GUC: 0 (0.00%)
GUA: 0 (0.00%)
GUG: 0 (0.00%)
TGG: 2,889,548 (0.27%)
UGG: 0 (0.00%)
TAT: 137,160 (0.01%)
TAC: 520,156 (0.05%)
UAU: 0 (0.00%)
UAC: 0 (0.00%)
TAA: 0 (0.00%)
TAG: 1 (0.00%)
TGA: 6 (0.00%)
UAA: 0 (0.00%)
UAG: 0 (0.00%)
UGA: 0 (0.00%)

---

Ancient Ecocosmology - 2

A letter from Goober (c. 1404)

---

I. Background

The first post of this series (year 2011) focused on the difficulties with the interpretation of ancient writings (Ancient Ecocosmology?).

Then an update within that post focused on how AI was also trying to figure it out too (ibid).

Several Dredd Blog posts have noticed that the same problem exists when trying to decipher ancient DNA, and somewhat recent DNA too for that matter (e.g. MetaSUB, 2, 3, 4, 5, 6).

While I was reading about Vikings a day or so ago, there was an article about how DNA was extracted from a Viking "mummy" and the excruciating pains taken by several adventurous scientists to "read the tea leaves" of time (e.g. Cell).

Eventually, I downloaded some relevant Viking genetic material from a government repository (NCBI).

II. Today's Appendix

I did some analysis of the Viking data set forth in the government database, and then used several HTML tables to display that data (Appendix).

The articles and papers I read indicated that quite a bit of software band-aids, connectors, and insertions were used on the sampled Viking DNA, which helped me to focus on a problem in the MetaSUB sequences:

"It also specifies the percentage of those out-of-frame elements, which said percentages seem very mechanical rather than random as one would expect of random samples in random locations around the globe.

Which leads me to the suspicion that their use of software, whether AI or otherwise, is involved the their data production."

(MetaSUB - 6).  Both the Viking DNA and the MetaSUB City Dweller DNA have mechanical looking "out-of-frame" percentages (ratio of out-of-frame nucleotides to in-frame nucleotides).

They appear at the bottom of each table as:

"Out of frame base-pair
count: 5,112,554
(17.53%)"

(see appendix). In other words since "out-of-frame" nucleotides are often interpreted as "mutations", and since random genetic mutations are not mechanical to that degree, I think that the use of software (including hallucinating AI) is the cause of those mechanical looking percentages.

III. Closing Comments

I am often reminded of the professor who uses the phrase "we don't know" in circumstances where we really do not know (see video below).

It is much more honest and scientific than making things up as children do when they are playing with dolls.

The previous post in this series is here.

---

---

AE Appendix

This is an appendix to Ancient Ecocosmology - 2

---

The extremely large DNA file had to be separated into smaller (1 gibabyte) sections. Each section is depicted in the following HTML tables.

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,167,463

Codon	Codon count
GCT	588,540
GCC	532,854
GCA	573,264
GCG	85,938
GCU	0
TGT	659,789
TGC	7,165
UGU	0
UGC	0
GAT	333,458
GAC	189,719
GAU	0
GAA	715,823
GAG	201,963
TTT	372,479
TTC	325,808
UUU	0
UUC	0
GGT	300,527
GGC	7,931
GGA	73,962
GGG	100,311
GGU	0
CAT	176,573
CAC	293,181
CAU	0
ATT	63,187
ATC	116,035
ATA	82,401
AUU	0
AUC	0
AUA	0
AAA	374,662
AAG	68,579
CTT	115,601
CTC	269,932
CTA	87,113
CTG	76,129
TTA	42,761
TTG	27,748
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	6,841
AUG	0
AAT	15,747
AAC	67,742
AAU	0
CCT	89,301
CCC	108,678
CCA	105,661
CCG	18,477
CCU	0
CAA	50,937
CAG	125,485
CGT	25,737
CGC	978
CGA	3,466
CGG	7,617
AGA	70,337
AGG	18,693
CGU	0
TCT	47,289
TCC	33,335
TCA	37,265
TCG	5,855
AGT	47,327
AGC	1,284
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	35,678
ACC	22,914
ACA	36,263
ACG	4,935
ACU	0
GTT	16,247
GTC	14,341
GTA	17,054
GTG	22,833
GUU	0
GUC	0
GUA	0
GUG	0
TGG	76,895
UGG	0
TAT	4,284
TAC	15,374
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,112,554
(17.53%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,780,232

Codon	Codon count
GCT	624,104
GCC	645,380
GCA	593,381
GCG	140,490
GCU	0
TGT	625,904
TGC	10,273
UGU	0
UGC	0
GAT	310,870
GAC	216,587
GAU	0
GAA	711,152
GAG	230,539
TTT	315,296
TTC	298,396
UUU	0
UUC	0
GGT	328,382
GGC	14,590
GGA	78,864
GGG	127,857
GGU	0
CAT	159,330
CAC	312,179
CAU	0
ATT	50,656
ATC	104,815
ATA	65,990
AUU	0
AUC	0
AUA	0
AAA	327,013
AAG	64,311
CTT	105,177
CTC	293,657
CTA	76,434
CTG	85,046
TTA	36,117
TTG	26,793
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	5,604
AUG	0
AAT	12,674
AAC	61,907
AAU	0
CCT	96,013
CCC	135,789
CCA	110,115
CCG	29,264
CCU	0
CAA	44,296
CAG	130,135
CGT	35,246
CGC	1,827
CGA	4,923
CGG	12,876
AGA	62,399
AGG	21,074
CGU	0
TCT	46,080
TCC	34,586
TCA	36,823
TCG	8,545
AGT	45,071
AGC	1,640
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	33,968
ACC	23,291
ACA	33,746
ACG	6,411
ACU	0
GTT	15,297
GTC	15,701
GTA	16,616
GTG	27,559
GUU	0
GUC	0
GUA	0
GUG	0
TGG	80,263
UGG	0
TAT	3,268
TAC	12,978
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,223,528
(17.54%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,706,255

Codon	Codon count
GCT	634,235
GCC	655,761
GCA	595,379
GCG	131,815
GCU	0
TGT	615,754
TGC	10,539
UGU	0
UGC	0
GAT	307,357
GAC	216,850
GAU	0
GAA	711,835
GAG	232,781
TTT	307,150
TTC	297,555
UUU	0
UUC	0
GGT	328,796
GGC	13,555
GGA	81,140
GGG	127,576
GGU	0
CAT	156,124
CAC	311,098
CAU	0
ATT	46,244
ATC	100,256
ATA	61,713
AUU	0
AUC	0
AUA	0
AAA	317,988
AAG	64,098
CTT	105,514
CTC	296,493
CTA	76,039
CTG	87,914
TTA	36,071
TTG	26,543
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	5,204
AUG	0
AAT	11,977
AAC	61,307
AAU	0
CCT	98,002
CCC	135,715
CCA	111,852
CCG	28,976
CCU	0
CAA	44,530
CAG	131,513
CGT	34,727
CGC	1,666
CGA	5,053
CGG	12,209
AGA	62,271
AGG	22,167
CGU	0
TCT	46,149
TCC	35,505
TCA	36,056
TCG	8,200
AGT	45,044
AGC	1,751
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	33,175
ACC	23,943
ACA	33,288
ACG	6,601
ACU	0
GTT	15,120
GTC	15,480
GTA	16,369
GTG	27,449
GUU	0
GUC	0
GUA	0
GUG	0
TGG	82,525
UGG	0
TAT	3,036
TAC	12,990
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,214,186
(17.55%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
30,196,172

Codon	Codon count
GCT	655,969
GCC	697,129
GCA	605,469
GCG	144,811
GCU	0
TGT	603,659
TGC	11,255
UGU	0
UGC	0
GAT	314,328
GAC	220,671
GAU	0
GAA	717,709
GAG	243,938
TTT	289,470
TTC	297,740
UUU	0
UUC	0
GGT	345,410
GGC	15,063
GGA	84,194
GGG	134,608
GGU	0
CAT	150,287
CAC	319,392
CAU	0
ATT	42,410
ATC	98,179
ATA	55,902
AUU	0
AUC	0
AUA	0
AAA	305,613
AAG	63,923
CTT	106,635
CTC	310,269
CTA	77,448
CTG	92,839
TTA	33,742
TTG	27,080
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	4,882
AUG	0
AAT	10,552
AAC	61,788
AAU	0
CCT	101,620
CCC	144,429
CCA	115,720
CCG	31,494
CCU	0
CAA	42,610
CAG	135,464
CGT	36,516
CGC	1,844
CGA	5,330
CGG	12,930
AGA	60,248
AGG	23,213
CGU	0
TCT	45,671
TCC	35,530
TCA	36,637
TCG	9,049
AGT	45,292
AGC	1,838
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	33,093
ACC	24,411
ACA	31,671
ACG	6,394
ACU	0
GTT	15,671
GTC	15,398
GTA	15,938
GTG	30,407
GUU	0
GUC	0
GUA	0
GUG	0
TGG	81,773
UGG	0
TAT	2,630
TAC	12,525
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,303,042
(17.56%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,082,275

Codon	Codon count
GCT	577,660
GCC	523,949
GCA	575,250
GCG	97,301
GCU	0
TGT	666,924
TGC	7,399
UGU	0
UGC	0
GAT	324,997
GAC	192,238
GAU	0
GAA	715,412
GAG	200,230
TTT	377,639
TTC	326,894
UUU	0
UUC	0
GGT	296,191
GGC	9,011
GGA	73,068
GGG	98,161
GGU	0
CAT	174,346
CAC	297,506
CAU	0
ATT	62,879
ATC	116,841
ATA	81,032
AUU	0
AUC	0
AUA	0
AAA	377,529
AAG	66,671
CTT	112,979
CTC	266,687
CTA	84,658
CTG	72,614
TTA	42,006
TTG	26,897
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	6,698
AUG	0
AAT	15,618
AAC	67,895
AAU	0
CCT	85,392
CCC	107,906
CCA	103,700
CCG	21,421
CCU	0
CAA	48,559
CAG	120,643
CGT	29,305
CGC	1,095
CGA	3,938
CGG	8,548
AGA	68,591
AGG	18,420
CGU	0
TCT	47,467
TCC	33,126
TCA	37,427
TCG	6,575
AGT	46,624
AGC	1,132
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	35,734
ACC	22,897
ACA	36,566
ACG	5,924
ACU	0
GTT	16,272
GTC	15,423
GTA	16,937
GTG	23,756
GUU	0
GUC	0
GUA	0
GUG	0
TGG	75,027
UGG	0
TAT	4,303
TAC	14,962
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,103,725
(17.55%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,968,823

Codon	Codon count
GCT	618,806
GCC	590,358
GCA	596,130
GCG	106,147
GCU	0
TGT	658,092
TGC	8,275
UGU	0
UGC	0
GAT	330,643
GAC	203,434
GAU	0
GAA	736,748
GAG	220,253
TTT	350,388
TTC	321,520
UUU	0
UUC	0
GGT	316,678
GGC	9,504
GGA	79,805
GGG	110,392
GGU	0
CAT	168,548
CAC	307,182
CAU	0
ATT	56,483
ATC	112,007
ATA	74,004
AUU	0
AUC	0
AUA	0
AAA	357,452
AAG	67,982
CTT	112,998
CTC	288,730
CTA	85,023
CTG	82,415
TTA	41,422
TTG	27,997
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	6,254
AUG	0
AAT	13,723
AAC	65,894
AAU	0
CCT	94,026
CCC	119,767
CCA	109,054
CCG	23,516
CCU	0
CAA	49,119
CAG	131,859
CGT	30,416
CGC	1,266
CGA	4,479
CGG	9,658
AGA	67,959
AGG	20,356
CGU	0
TCT	47,896
TCC	35,585
TCA	38,835
TCG	7,111
AGT	47,734
AGC	1,421
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	35,026
ACC	23,699
ACA	35,807
ACG	5,701
ACU	0
GTT	16,022
GTC	15,443
GTA	17,544
GTG	25,782
GUU	0
GUC	0
GUA	0
GUG	0
TGG	80,340
UGG	0
TAT	3,928
TAC	14,331
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,251,922
(17.52%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
31,235,624

Codon	Codon count
GCT	690,019
GCC	744,805
GCA	642,755
GCG	148,268
GCU	0
TGT	620,301
TGC	11,186
UGU	0
UGC	0
GAT	306,750
GAC	240,702
GAU	0
GAA	741,918
GAG	254,793
TTT	282,326
TTC	296,132
UUU	0
UUC	0
GGT	361,530
GGC	14,629
GGA	88,893
GGG	147,221
GGU	0
CAT	155,221
CAC	337,413
CAU	0
ATT	41,254
ATC	94,843
ATA	54,574
AUU	0
AUC	0
AUA	0
AAA	295,969
AAG	64,124
CTT	104,469
CTC	314,424
CTA	74,219
CTG	100,190
TTA	33,885
TTG	26,741
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	4,793
AUG	0
AAT	10,631
AAC	61,189
AAU	0
CCT	111,534
CCC	152,485
CCA	120,559
CCG	33,591
CCU	0
CAA	42,621
CAG	142,147
CGT	39,691
CGC	1,659
CGA	5,481
CGG	14,564
AGA	61,302
AGG	25,877
CGU	0
TCT	49,222
TCC	38,838
TCA	36,941
TCG	9,259
AGT	47,984
AGC	2,235
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	32,957
ACC	23,927
ACA	33,423
ACG	7,086
ACU	0
GTT	14,677
GTC	16,865
GTA	16,006
GTG	31,997
GUU	0
GUC	0
GUA	0
GUG	0
TGG	88,425
UGG	0
TAT	2,480
TAC	11,598
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,490,830
(17.58%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,921,243

Codon	Codon count
GCT	627,133
GCC	665,445
GCA	589,140
GCG	140,525
GCU	0
TGT	614,944
TGC	10,628
UGU	0
UGC	0
GAT	311,338
GAC	220,774
GAU	0
GAA	715,951
GAG	241,883
TTT	292,200
TTC	293,157
UUU	0
UUC	0
GGT	342,389
GGC	14,126
GGA	82,016
GGG	131,390
GGU	0
CAT	157,225
CAC	323,581
CAU	0
ATT	44,209
ATC	101,592
ATA	59,553
AUU	0
AUC	0
AUA	0
AAA	313,752
AAG	64,213
CTT	103,980
CTC	312,429
CTA	77,258
CTG	89,931
TTA	33,333
TTG	26,008
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	5,257
AUG	0
AAT	11,868
AAC	62,118
AAU	0
CCT	100,216
CCC	143,887
CCA	113,114
CCG	27,908
CCU	0
CAA	44,309
CAG	135,011
CGT	34,754
CGC	2,282
CGA	4,988
CGG	12,474
AGA	60,942
AGG	23,065
CGU	0
TCT	45,368
TCC	35,408
TCA	37,258
TCG	8,316
AGT	44,794
AGC	1,796
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	33,963
ACC	23,677
ACA	32,916
ACG	6,196
ACU	0
GTT	15,641
GTC	15,473
GTA	15,976
GTG	29,321
GUU	0
GUC	0
GUA	0
GUG	0
TGG	82,389
UGG	0
TAT	2,909
TAC	12,394
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,242,970
(17.52%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
30,201,462

Codon	Codon count
GCT	628,248
GCC	619,616
GCA	597,094
GCG	115,164
GCU	0
TGT	641,151
TGC	9,083
UGU	0
UGC	0
GAT	328,975
GAC	210,168
GAU	0
GAA	735,315
GAG	228,881
TTT	339,271
TTC	318,805
UUU	0
UUC	0
GGT	328,853
GGC	11,526
GGA	80,091
GGG	118,237
GGU	0
CAT	166,014
CAC	310,863
CAU	0
ATT	53,236
ATC	108,150
ATA	69,382
AUU	0
AUC	0
AUA	0
AAA	348,016
AAG	67,123
CTT	114,781
CTC	300,619
CTA	84,056
CTG	84,919
TTA	39,399
TTG	27,952
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	5,900
AUG	0
AAT	13,099
AAC	65,440
AAU	0
CCT	97,321
CCC	128,254
CCA	113,198
CCG	24,846
CCU	0
CAA	47,948
CAG	131,774
CGT	30,557
CGC	1,533
CGA	4,419
CGG	10,353
AGA	65,639
AGG	21,401
CGU	0
TCT	48,782
TCC	36,995
TCA	38,889
TCG	7,403
AGT	47,675
AGC	1,495
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	35,422
ACC	24,692
ACA	35,219
ACG	5,721
ACU	0
GTT	15,857
GTC	14,497
GTA	17,103
GTG	25,033
GUU	0
GUC	0
GUA	0
GUG	0
TGG	81,613
UGG	0
TAT	3,653
TAC	13,437
UAU	0
UAC	0
TAA	0
TAG	0
TGA	1
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,300,991
(17.55%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
30,118,424

Codon	Codon count
GCT	640,932
GCC	657,448
GCA	604,225
GCG	128,527
GCU	0
TGT	622,731
TGC	10,104
UGU	0
UGC	0
GAT	320,819
GAC	217,089
GAU	0
GAA	724,526
GAG	231,090
TTT	314,526
TTC	303,785
UUU	0
UUC	0
GGT	334,752
GGC	13,157
GGA	80,818
GGG	124,236
GGU	0
CAT	162,390
CAC	312,306
CAU	0
ATT	49,054
ATC	104,303
ATA	64,471
AUU	0
AUC	0
AUA	0
AAA	331,392
AAG	66,214
CTT	109,021
CTC	296,987
CTA	77,770
CTG	90,141
TTA	37,257
TTG	27,737
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	5,675
AUG	0
AAT	12,364
AAC	63,415
AAU	0
CCT	96,906
CCC	135,490
CCA	114,073
CCG	27,736
CCU	0
CAA	46,641
CAG	133,317
CGT	33,799
CGC	1,894
CGA	4,732
CGG	11,182
AGA	63,676
AGG	21,710
CGU	0
TCT	46,613
TCC	35,529
TCA	37,167
TCG	7,899
AGT	45,028
AGC	1,559
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	33,578
ACC	23,914
ACA	33,401
ACG	6,028
ACU	0
GTT	16,396
GTC	15,393
GTA	15,867
GTG	28,186
GUU	0
GUC	0
GUA	0
GUG	0
TGG	82,727
UGG	0
TAT	3,066
TAC	13,363
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,290,028
(17.56%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,499,891

Codon	Codon count
GCT	612,920
GCC	596,201
GCA	589,453
GCG	118,224
GCU	0
TGT	638,312
TGC	8,807
UGU	0
UGC	0
GAT	314,576
GAC	207,242
GAU	0
GAA	717,687
GAG	219,906
TTT	341,616
TTC	313,257
UUU	0
UUC	0
GGT	315,744
GGC	11,676
GGA	77,759
GGG	112,768
GGU	0
CAT	162,277
CAC	307,762
CAU	0
ATT	54,204
ATC	107,617
ATA	69,878
AUU	0
AUC	0
AUA	0
AAA	343,488
AAG	64,242
CTT	109,647
CTC	279,650
CTA	79,759
CTG	81,080
TTA	38,748
TTG	26,433
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	6,212
AUG	0
AAT	13,052
AAC	63,942
AAU	0
CCT	92,656
CCC	121,986
CCA	107,595
CCG	25,426
CCU	0
CAA	46,465
CAG	129,545
CGT	33,296
CGC	1,552
CGA	4,443
CGG	10,984
AGA	63,842
AGG	20,696
CGU	0
TCT	47,390
TCC	35,584
TCA	37,225
TCG	7,521
AGT	47,053
AGC	1,383
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	34,184
ACC	23,214
ACA	35,493
ACG	6,199
ACU	0
GTT	15,710
GTC	16,059
GTA	16,786
GTG	25,481
GUU	0
GUC	0
GUA	0
GUG	0
TGG	78,970
UGG	0
TAT	3,558
TAC	13,752
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,175,330
(17.54%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
28,942,484

Codon	Codon count
GCT	573,832
GCC	518,432
GCA	566,736
GCG	93,569
GCU	0
TGT	668,891
TGC	8,133
UGU	0
UGC	0
GAT	326,381
GAC	189,872
GAU	0
GAA	711,876
GAG	196,601
TTT	376,672
TTC	324,658
UUU	0
UUC	0
GGT	294,156
GGC	8,429
GGA	73,366
GGG	98,648
GGU	0
CAT	175,613
CAC	292,663
CAU	0
ATT	63,756
ATC	116,812
ATA	84,726
AUU	0
AUC	0
AUA	0
AAA	379,314
AAG	66,327
CTT	112,515
CTC	263,671
CTA	83,942
CTG	72,696
TTA	43,643
TTG	27,070
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	7,076
AUG	0
AAT	15,759
AAC	67,644
AAU	0
CCT	84,863
CCC	107,428
CCA	101,412
CCG	20,438
CCU	0
CAA	49,746
CAG	122,112
CGT	28,057
CGC	1,025
CGA	3,863
CGG	8,463
AGA	69,615
AGG	17,334
CGU	0
TCT	47,310
TCC	32,728
TCA	37,482
TCG	6,524
AGT	46,951
AGC	1,238
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	36,291
ACC	22,504
ACA	37,860
ACG	5,406
ACU	0
GTT	15,815
GTC	14,682
GTA	16,854
GTG	23,068
GUU	0
GUC	0
GUA	0
GUG	0
TGG	75,331
UGG	0
TAT	4,651
TAC	15,481
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,068,451
(17.51%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
28,940,042

Codon	Codon count
GCT	580,591
GCC	550,447
GCA	569,252
GCG	99,381
GCU	0
TGT	642,786
TGC	8,734
UGU	0
UGC	0
GAT	325,081
GAC	189,009
GAU	0
GAA	704,786
GAG	206,437
TTT	361,298
TTC	311,794
UUU	0
UUC	0
GGT	304,231
GGC	9,903
GGA	72,879
GGG	101,198
GGU	0
CAT	168,937
CAC	297,148
CAU	0
ATT	58,930
ATC	114,058
ATA	77,625
AUU	0
AUC	0
AUA	0
AAA	371,323
AAG	67,349
CTT	112,169
CTC	278,379
CTA	83,389
CTG	75,907
TTA	39,782
TTG	26,728
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	6,698
AUG	0
AAT	14,670
AAC	65,627
AAU	0
CCT	86,148
CCC	113,497
CCA	103,836
CCG	20,100
CCU	0
CAA	48,620
CAG	125,318
CGT	26,409
CGC	1,315
CGA	3,977
CGG	8,347
AGA	65,852
AGG	18,648
CGU	0
TCT	45,482
TCC	32,154
TCA	37,518
TCG	6,536
AGT	44,793
AGC	1,222
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	36,138
ACC	23,308
ACA	35,660
ACG	5,102
ACU	0
GTT	15,866
GTC	14,151
GTA	16,652
GTG	24,152
GUU	0
GUC	0
GUA	0
GUG	0
TGG	77,810
UGG	0
TAT	4,125
TAC	15,341
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,076,233
(17.54%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,459,764

Codon	Codon count
GCT	631,113
GCC	668,677
GCA	591,367
GCG	139,447
GCU	0
TGT	594,713
TGC	10,603
UGU	0
UGC	0
GAT	309,244
GAC	210,354
GAU	0
GAA	693,221
GAG	236,141
TTT	300,577
TTC	292,166
UUU	0
UUC	0
GGT	329,442
GGC	14,868
GGA	81,616
GGG	128,418
GGU	0
CAT	149,656
CAC	306,332
CAU	0
ATT	45,148
ATC	98,647
ATA	59,065
AUU	0
AUC	0
AUA	0
AAA	315,176
AAG	63,359
CTT	105,257
CTC	302,364
CTA	77,093
CTG	86,917
TTA	34,858
TTG	26,478
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	5,239
AUG	0
AAT	11,164
AAC	61,152
AAU	0
CCT	96,915
CCC	138,792
CCA	110,857
CCG	28,634
CCU	0
CAA	43,171
CAG	130,171
CGT	34,132
CGC	2,042
CGA	5,221
CGG	12,068
AGA	60,476
AGG	21,384
CGU	0
TCT	44,259
TCC	34,840
TCA	36,431
TCG	8,351
AGT	43,003
AGC	1,677
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	33,451
ACC	24,047
ACA	31,627
ACG	5,976
ACU	0
GTT	15,066
GTC	15,103
GTA	15,918
GTG	27,556
GUU	0
GUC	0
GUA	0
GUG	0
TGG	80,319
UGG	0
TAT	3,009
TAC	12,685
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,168,605
(17.54%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
28,161,830

Codon	Codon count
GCT	547,448
GCC	465,197
GCA	540,440
GCG	72,687
GCU	0
TGT	668,782
TGC	6,177
UGU	0
UGC	0
GAT	335,143
GAC	170,552
GAU	0
GAA	686,123
GAG	179,892
TTT	399,964
TTC	325,653
UUU	0
UUC	0
GGT	282,406
GGC	7,188
GGA	68,992
GGG	84,841
GGU	0
CAT	178,056
CAC	277,669
CAU	0
ATT	70,570
ATC	122,462
ATA	93,133
AUU	0
AUC	0
AUA	0
AAA	400,222
AAG	67,415
CTT	116,241
CTC	253,712
CTA	88,720
CTG	65,632
TTA	45,204
TTG	27,283
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	7,567
AUG	0
AAT	17,405
AAC	68,198
AAU	0
CCT	78,232
CCC	96,596
CCA	97,813
CCG	15,611
CCU	0
CAA	52,328
CAG	116,399
CGT	23,228
CGC	725
CGA	3,342
CGG	6,198
AGA	71,248
AGG	15,979
CGU	0
TCT	44,628
TCC	31,512
TCA	37,334
TCG	5,600
AGT	45,837
AGC	969
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	37,025
ACC	22,302
ACA	37,111
ACG	4,461
ACU	0
GTT	15,854
GTC	14,111
GTA	16,885
GTG	20,686
GUU	0
GUC	0
GUA	0
GUG	0
TGG	71,605
UGG	0
TAT	4,938
TAC	16,247
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 4,924,496
(17.49%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
28,916,524

Codon	Codon count
GCT	556,481
GCC	505,432
GCA	547,841
GCG	76,701
GCU	0
TGT	665,663
TGC	6,640
UGU	0
UGC	0
GAT	346,486
GAC	182,057
GAU	0
GAA	705,242
GAG	191,037
TTT	396,463
TTC	324,936
UUU	0
UUC	0
GGT	298,982
GGC	6,811
GGA	70,135
GGG	97,923
GGU	0
CAT	181,302
CAC	291,249
CAU	0
ATT	68,697
ATC	121,776
ATA	92,008
AUU	0
AUC	0
AUA	0
AAA	393,526
AAG	69,964
CTT	115,787
CTC	263,239
CTA	91,116
CTG	73,293
TTA	43,008
TTG	28,570
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	7,527
AUG	0
AAT	16,626
AAC	70,398
AAU	0
CCT	80,416
CCC	108,243
CCA	103,886
CCG	16,544
CCU	0
CAA	52,212
CAG	118,372
CGT	23,753
CGC	947
CGA	3,668
CGG	7,098
AGA	70,401
AGG	17,505
CGU	0
TCT	45,946
TCC	32,910
TCA	36,297
TCG	5,882
AGT	45,852
AGC	739
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	37,536
ACC	23,246
ACA	36,867
ACG	4,691
ACU	0
GTT	15,447
GTC	13,735
GTA	18,074
GTG	22,010
GUU	0
GUC	0
GUA	0
GUG	0
TGG	76,809
UGG	0
TAT	4,872
TAC	16,456
UAU	0
UAC	0
TAA	0
TAG	0
TGA	1
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,074,531
(17.55%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
28,747,901

Codon	Codon count
GCT	571,179
GCC	512,065
GCA	555,163
GCG	77,114
GCU	0
TGT	660,912
TGC	6,976
UGU	0
UGC	0
GAT	331,100
GAC	184,512
GAU	0
GAA	705,834
GAG	195,280
TTT	381,636
TTC	322,240
UUU	0
UUC	0
GGT	294,931
GGC	7,082
GGA	71,150
GGG	95,549
GGU	0
CAT	175,383
CAC	288,054
CAU	0
ATT	65,442
ATC	119,584
ATA	85,462
AUU	0
AUC	0
AUA	0
AAA	382,153
AAG	67,532
CTT	116,304
CTC	264,641
CTA	88,171
CTG	74,036
TTA	42,681
TTG	28,099
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	7,148
AUG	0
AAT	15,811
AAC	68,750
AAU	0
CCT	85,753
CCC	104,825
CCA	103,103
CCG	17,352
CCU	0
CAA	50,706
CAG	121,288
CGT	23,700
CGC	859
CGA	3,452
CGG	6,797
AGA	69,942
AGG	17,864
CGU	0
TCT	46,754
TCC	32,492
TCA	37,871
TCG	5,658
AGT	47,057
AGC	1,145
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	36,627
ACC	22,285
ACA	36,855
ACG	4,747
ACU	0
GTT	16,044
GTC	14,118
GTA	17,301
GTG	22,202
GUU	0
GUC	0
GUA	0
GUG	0
TGG	75,387
UGG	0
TAT	4,478
TAC	15,881
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,034,350
(17.51%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
28,710,450

Codon	Codon count
GCT	594,093
GCC	585,363
GCA	569,574
GCG	100,202
GCU	0
TGT	607,854
TGC	8,749
UGU	0
UGC	0
GAT	318,439
GAC	199,929
GAU	0
GAA	695,228
GAG	218,621
TTT	323,324
TTC	306,932
UUU	0
UUC	0
GGT	307,628
GGC	9,694
GGA	77,905
GGG	114,427
GGU	0
CAT	162,434
CAC	294,287
CAU	0
ATT	52,023
ATC	106,217
ATA	69,389
AUU	0
AUC	0
AUA	0
AAA	334,783
AAG	63,802
CTT	107,873
CTC	280,480
CTA	83,122
CTG	81,508
TTA	36,208
TTG	26,426
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	5,633
AUG	0
AAT	12,919
AAC	64,576
AAU	0
CCT	91,340
CCC	122,705
CCA	107,715
CCG	21,673
CCU	0
CAA	44,564
CAG	126,371
CGT	27,322
CGC	1,284
CGA	4,052
CGG	9,079
AGA	64,945
AGG	21,242
CGU	0
TCT	44,830
TCC	33,063
TCA	36,661
TCG	6,608
AGT	45,912
AGC	1,335
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	33,447
ACC	22,538
ACA	33,254
ACG	5,112
ACU	0
GTT	15,210
GTC	14,139
GTA	15,949
GTG	24,522
GUU	0
GUC	0
GUA	0
GUG	0
TGG	78,777
UGG	0
TAT	3,511
TAC	13,710
UAU	0
UAC	0
TAA	0
TAG	0
TGA	1
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,038,911
(17.55%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,926,954

Codon	Codon count
GCT	616,805
GCC	601,243
GCA	592,105
GCG	114,481
GCU	0
TGT	653,368
TGC	8,564
UGU	0
UGC	0
GAT	327,339
GAC	203,733
GAU	0
GAA	724,596
GAG	218,422
TTT	345,693
TTC	317,954
UUU	0
UUC	0
GGT	320,292
GGC	11,022
GGA	78,078
GGG	112,381
GGU	0
CAT	168,176
CAC	311,824
CAU	0
ATT	56,259
ATC	111,753
ATA	72,827
AUU	0
AUC	0
AUA	0
AAA	358,194
AAG	66,359
CTT	113,043
CTC	290,718
CTA	81,719
CTG	82,515
TTA	40,371
TTG	27,428
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	6,199
AUG	0
AAT	14,204
AAC	65,810
AAU	0
CCT	91,039
CCC	123,501
CCA	108,238
CCG	24,493
CCU	0
CAA	47,964
CAG	130,622
CGT	31,739
CGC	1,546
CGA	4,647
CGG	10,218
AGA	67,403
AGG	20,654
CGU	0
TCT	47,794
TCC	34,256
TCA	38,626
TCG	7,110
AGT	46,804
AGC	1,587
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	36,376
ACC	24,457
ACA	35,566
ACG	5,702
ACU	0
GTT	17,001
GTC	15,206
GTA	16,822
GTG	25,439
GUU	0
GUC	0
GUA	0
GUG	0
TGG	80,004
UGG	0
TAT	3,924
TAC	14,282
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,247,469
(17.53%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,610,726

Codon	Codon count
GCT	603,627
GCC	574,168
GCA	589,853
GCG	96,243
GCU	0
TGT	655,797
TGC	8,134
UGU	0
UGC	0
GAT	330,028
GAC	200,087
GAU	0
GAA	723,097
GAG	211,011
TTT	355,914
TTC	321,831
UUU	0
UUC	0
GGT	311,519
GGC	9,660
GGA	76,272
GGG	107,424
GGU	0
CAT	172,139
CAC	303,550
CAU	0
ATT	58,641
ATC	112,114
ATA	76,948
AUU	0
AUC	0
AUA	0
AAA	359,840
AAG	68,139
CTT	114,356
CTC	279,145
CTA	85,983
CTG	80,306
TTA	40,848
TTG	27,659
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	6,242
AUG	0
AAT	14,430
AAC	66,807
AAU	0
CCT	90,839
CCC	115,730
CCA	108,545
CCG	21,521
CCU	0
CAA	49,343
CAG	128,577
CGT	28,670
CGC	1,296
CGA	4,198
CGG	8,529
AGA	67,483
AGG	20,385
CGU	0
TCT	48,375
TCC	34,910
TCA	37,854
TCG	6,563
AGT	48,309
AGC	1,229
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	35,429
ACC	23,164
ACA	36,721
ACG	5,396
ACU	0
GTT	15,709
GTC	14,599
GTA	17,093
GTG	23,756
GUU	0
GUC	0
GUA	0
GUG	0
TGG	80,090
UGG	0
TAT	4,017
TAC	14,955
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,205,435
(17.58%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,293,222

Codon	Codon count
GCT	596,431
GCC	562,853
GCA	576,063
GCG	101,324
GCU	0
TGT	648,050
TGC	7,723
UGU	0
UGC	0
GAT	326,483
GAC	198,805
GAU	0
GAA	713,641
GAG	206,822
TTT	361,910
TTC	317,574
UUU	0
UUC	0
GGT	309,974
GGC	9,752
GGA	75,223
GGG	108,341
GGU	0
CAT	169,097
CAC	296,249
CAU	0
ATT	59,459
ATC	111,560
ATA	77,619
AUU	0
AUC	0
AUA	0
AAA	363,014
AAG	66,941
CTT	113,352
CTC	277,645
CTA	83,750
CTG	78,618
TTA	40,585
TTG	28,359
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	6,196
AUG	0
AAT	14,517
AAC	65,554
AAU	0
CCT	87,660
CCC	116,564
CCA	106,266
CCG	22,081
CCU	0
CAA	48,553
CAG	126,584
CGT	29,245
CGC	1,425
CGA	3,990
CGG	9,415
AGA	67,649
AGG	19,342
CGU	0
TCT	46,933
TCC	33,497
TCA	38,087
TCG	6,574
AGT	46,087
AGC	1,296
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	34,823
ACC	23,719
ACA	35,770
ACG	5,647
ACU	0
GTT	15,649
GTC	14,585
GTA	16,227
GTG	23,728
GUU	0
GUC	0
GUA	0
GUG	0
TGG	78,572
UGG	0
TAT	4,110
TAC	14,977
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,135,605
(17.53%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
28,837,196

Codon	Codon count
GCT	583,549
GCC	550,590
GCA	563,973
GCG	95,805
GCU	0
TGT	646,618
TGC	7,470
UGU	0
UGC	0
GAT	322,246
GAC	191,269
GAU	0
GAA	703,593
GAG	203,164
TTT	354,071
TTC	311,330
UUU	0
UUC	0
GGT	305,895
GGC	9,689
GGA	74,379
GGG	104,056
GGU	0
CAT	167,577
CAC	296,932
CAU	0
ATT	58,503
ATC	111,540
ATA	77,022
AUU	0
AUC	0
AUA	0
AAA	360,791
AAG	67,592
CTT	112,292
CTC	271,794
CTA	84,224
CTG	76,402
TTA	40,604
TTG	27,284
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	6,348
AUG	0
AAT	14,181
AAC	64,711
AAU	0
CCT	87,627
CCC	112,802
CCA	105,017
CCG	19,826
CCU	0
CAA	47,644
CAG	124,409
CGT	27,870
CGC	1,382
CGA	4,011
CGG	8,410
AGA	67,975
AGG	18,889
CGU	0
TCT	45,559
TCC	32,718
TCA	38,038
TCG	6,469
AGT	46,509
AGC	1,333
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	34,845
ACC	23,051
ACA	35,072
ACG	5,184
ACU	0
GTT	15,177
GTC	14,186
GTA	16,833
GTG	24,067
GUU	0
GUC	0
GUA	0
GUG	0
TGG	76,941
UGG	0
TAT	3,706
TAC	15,025
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,058,989
(17.54%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,872,800

Codon	Codon count
GCT	633,433
GCC	633,983
GCA	590,729
GCG	113,899
GCU	0
TGT	631,294
TGC	9,202
UGU	0
UGC	0
GAT	324,808
GAC	208,829
GAU	0
GAA	716,559
GAG	226,286
TTT	326,099
TTC	309,392
UUU	0
UUC	0
GGT	325,505
GGC	11,642
GGA	79,163
GGG	118,414
GGU	0
CAT	162,796
CAC	305,056
CAU	0
ATT	51,481
ATC	107,124
ATA	68,105
AUU	0
AUC	0
AUA	0
AAA	339,392
AAG	67,693
CTT	112,537
CTC	297,197
CTA	82,393
CTG	86,124
TTA	37,987
TTG	26,625
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	5,783
AUG	0
AAT	12,596
AAC	63,363
AAU	0
CCT	97,468
CCC	125,953
CCA	112,654
CCG	23,762
CCU	0
CAA	47,325
CAG	134,147
CGT	29,741
CGC	1,255
CGA	4,182
CGG	10,293
AGA	64,955
AGG	21,548
CGU	0
TCT	46,831
TCC	34,480
TCA	38,410
TCG	7,353
AGT	46,023
AGC	1,552
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	35,784
ACC	23,932
ACA	34,440
ACG	5,454
ACU	0
GTT	15,736
GTC	15,390
GTA	16,504
GTG	26,745
GUU	0
GUC	0
GUA	0
GUG	0
TGG	82,425
UGG	0
TAT	3,467
TAC	14,151
UAU	0
UAC	0
TAA	0
TAG	0
TGA	1
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,250,450
(17.58%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
12,608,382

Codon	Codon count
GCT	247,725
GCC	228,434
GCA	241,220
GCG	39,179
GCU	0
TGT	285,094
TGC	2,939
UGU	0
UGC	0
GAT	150,406
GAC	81,046
GAU	0
GAA	302,627
GAG	85,087
TTT	165,348
TTC	142,616
UUU	0
UUC	0
GGT	129,100
GGC	3,859
GGA	31,903
GGG	44,303
GGU	0
CAT	77,476
CAC	126,462
CAU	0
ATT	28,660
ATC	52,590
ATA	38,355
AUU	0
AUC	0
AUA	0
AAA	164,909
AAG	31,352
CTT	50,529
CTC	115,071
CTA	39,756
CTG	31,365
TTA	18,534
TTG	12,670
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	3,270
AUG	0
AAT	6,895
AAC	29,842
AAU	0
CCT	35,937
CCC	47,925
CCA	45,134
CCG	8,103
CCU	0
CAA	22,760
CAG	52,614
CGT	11,032
CGC	470
CGA	1,583
CGG	3,350
AGA	31,103
AGG	7,957
CGU	0
TCT	19,250
TCC	14,679
TCA	16,021
TCG	2,624
AGT	20,800
AGC	514
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	15,330
ACC	9,679
ACA	16,439
ACG	2,108
ACU	0
GTT	6,602
GTC	5,889
GTA	7,200
GTG	9,946
GUU	0
GUC	0
GUA	0
GUG	0
TGG	33,526
UGG	0
TAT	1,931
TAC	6,833
UAU	0
UAC	0
TAA	0
TAG	0
TGA	1
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 2,210,496
(17.53%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,324,659

Codon	Codon count
GCT	601,099
GCC	565,646
GCA	574,548
GCG	104,133
GCU	0
TGT	634,121
TGC	8,312
UGU	0
UGC	0
GAT	329,459
GAC	198,628
GAU	0
GAA	718,322
GAG	216,729
TTT	351,370
TTC	320,254
UUU	0
UUC	0
GGT	307,349
GGC	9,581
GGA	76,652
GGG	107,540
GGU	0
CAT	168,170
CAC	299,828
CAU	0
ATT	55,661
ATC	113,128
ATA	73,785
AUU	0
AUC	0
AUA	0
AAA	360,266
AAG	67,506
CTT	114,050
CTC	288,344
CTA	84,446
CTG	78,836
TTA	39,923
TTG	27,628
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	6,290
AUG	0
AAT	13,979
AAC	64,371
AAU	0
CCT	90,792
CCC	117,947
CCA	106,051
CCG	21,522
CCU	0
CAA	48,971
CAG	126,130
CGT	28,453
CGC	1,237
CGA	4,131
CGG	9,179
AGA	66,812
AGG	19,539
CGU	0
TCT	45,402
TCC	34,056
TCA	37,539
TCG	6,983
AGT	46,674
AGC	1,375
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	34,831
ACC	23,554
ACA	34,179
ACG	5,321
ACU	0
GTT	16,290
GTC	14,329
GTA	16,412
GTG	24,270
GUU	0
GUC	0
GUA	0
GUG	0
TGG	78,726
UGG	0
TAT	3,908
TAC	14,817
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,146,507
(17.55%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
30,598,730

Codon	Codon count
GCT	647,316
GCC	658,259
GCA	612,225
GCG	125,230
GCU	0
TGT	639,597
TGC	9,994
UGU	0
UGC	0
GAT	323,724
GAC	220,824
GAU	0
GAA	740,522
GAG	236,978
TTT	324,320
TTC	317,161
UUU	0
UUC	0
GGT	335,881
GGC	12,533
GGA	83,269
GGG	129,664
GGU	0
CAT	164,855
CAC	320,686
CAU	0
ATT	50,196
ATC	106,936
ATA	65,756
AUU	0
AUC	0
AUA	0
AAA	332,854
AAG	68,228
CTT	109,352
CTC	298,228
CTA	80,071
CTG	89,944
TTA	36,605
TTG	27,417
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	5,504
AUG	0
AAT	12,557
AAC	65,277
AAU	0
CCT	99,844
CCC	137,116
CCA	116,692
CCG	27,032
CCU	0
CAA	46,299
CAG	133,914
CGT	33,806
CGC	1,457
CGA	5,033
CGG	11,008
AGA	65,273
AGG	23,260
CGU	0
TCT	48,490
TCC	36,522
TCA	38,393
TCG	8,108
AGT	47,506
AGC	1,575
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	34,808
ACC	23,459
ACA	34,825
ACG	6,556
ACU	0
GTT	15,205
GTC	15,714
GTA	16,425
GTG	27,900
GUU	0
GUC	0
GUA	0
GUG	0
TGG	83,199
UGG	0
TAT	3,359
TAC	13,067
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,375,306
(17.57%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
30,304,429

Codon	Codon count
GCT	645,084
GCC	651,932
GCA	612,013
GCG	119,667
GCU	0
TGT	631,328
TGC	9,132
UGU	0
UGC	0
GAT	319,688
GAC	222,711
GAU	0
GAA	730,986
GAG	232,636
TTT	327,171
TTC	310,629
UUU	0
UUC	0
GGT	330,191
GGC	12,124
GGA	84,232
GGG	129,357
GGU	0
CAT	163,373
CAC	311,321
CAU	0
ATT	51,328
ATC	102,906
ATA	67,866
AUU	0
AUC	0
AUA	0
AAA	330,942
AAG	66,165
CTT	110,069
CTC	290,851
CTA	81,595
CTG	91,367
TTA	36,619
TTG	26,804
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	5,551
AUG	0
AAT	12,576
AAC	64,390
AAU	0
CCT	100,625
CCC	133,570
CCA	116,206
CCG	28,460
CCU	0
CAA	45,158
CAG	132,576
CGT	32,615
CGC	1,541
CGA	4,352
CGG	11,105
AGA	65,538
AGG	22,382
CGU	0
TCT	49,038
TCC	36,873
TCA	36,920
TCG	7,314
AGT	47,781
AGC	1,649
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	34,188
ACC	23,889
ACA	35,019
ACG	6,402
ACU	0
GTT	14,847
GTC	15,884
GTA	16,439
GTG	27,337
GUU	0
GUC	0
GUA	0
GUG	0
TGG	82,427
UGG	0
TAT	3,336
TAC	12,934
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,317,402
(17.55%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,328,191

Codon	Codon count
GCT	610,916
GCC	592,378
GCA	578,243
GCG	94,935
GCU	0
TGT	630,938
TGC	7,981
UGU	0
UGC	0
GAT	328,184
GAC	197,139
GAU	0
GAA	712,460
GAG	217,402
TTT	341,522
TTC	318,078
UUU	0
UUC	0
GGT	313,358
GGC	9,664
GGA	78,140
GGG	111,853
GGU	0
CAT	166,814
CAC	298,408
CAU	0
ATT	55,723
ATC	108,649
ATA	72,602
AUU	0
AUC	0
AUA	0
AAA	349,129
AAG	66,046
CTT	112,195
CTC	283,385
CTA	83,380
CTG	82,930
TTA	38,933
TTG	27,808
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	6,068
AUG	0
AAT	13,488
AAC	63,294
AAU	0
CCT	94,002
CCC	120,348
CCA	110,094
CCG	20,616
CCU	0
CAA	48,418
CAG	130,346
CGT	25,712
CGC	1,049
CGA	4,022
CGG	8,154
AGA	65,791
AGG	20,712
CGU	0
TCT	46,113
TCC	34,329
TCA	38,893
TCG	6,849
AGT	46,581
AGC	1,070
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	34,667
ACC	23,491
ACA	34,055
ACG	4,760
ACU	0
GTT	15,460
GTC	13,958
GTA	16,317
GTG	24,055
GUU	0
GUC	0
GUA	0
GUG	0
TGG	79,461
UGG	0
TAT	3,730
TAC	14,387
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,149,742
(17.56%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,207,503

Codon	Codon count
GCT	593,059
GCC	561,442
GCA	571,359
GCG	92,202
GCU	0
TGT	644,863
TGC	7,444
UGU	0
UGC	0
GAT	330,422
GAC	196,755
GAU	0
GAA	712,561
GAG	212,132
TTT	354,095
TTC	321,010
UUU	0
UUC	0
GGT	309,389
GGC	9,016
GGA	76,351
GGG	106,674
GGU	0
CAT	168,996
CAC	293,251
CAU	0
ATT	57,707
ATC	111,172
ATA	76,170
AUU	0
AUC	0
AUA	0
AAA	360,381
AAG	66,514
CTT	113,932
CTC	284,099
CTA	85,444
CTG	80,249
TTA	41,127
TTG	26,477
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	6,593
AUG	0
AAT	14,364
AAC	65,710
AAU	0
CCT	90,991
CCC	114,124
CCA	106,564
CCG	20,293
CCU	0
CAA	48,377
CAG	127,927
CGT	27,648
CGC	1,197
CGA	3,996
CGG	8,631
AGA	68,049
AGG	19,885
CGU	0
TCT	47,183
TCC	34,349
TCA	37,064
TCG	6,393
AGT	46,250
AGC	1,100
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	35,233
ACC	23,171
ACA	35,259
ACG	4,869
ACU	0
GTT	15,950
GTC	14,290
GTA	17,138
GTG	23,375
GUU	0
GUC	0
GUA	0
GUG	0
TGG	77,829
UGG	0
TAT	3,903
TAC	14,961
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,126,626
(17.55%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
28,909,117

Codon	Codon count
GCT	602,065
GCC	580,854
GCA	569,936
GCG	102,971
GCU	0
TGT	627,716
TGC	8,571
UGU	0
UGC	0
GAT	317,692
GAC	196,100
GAU	0
GAA	699,690
GAG	210,394
TTT	338,771
TTC	305,782
UUU	0
UUC	0
GGT	307,693
GGC	10,654
GGA	76,255
GGG	109,076
GGU	0
CAT	162,320
CAC	293,274
CAU	0
ATT	55,108
ATC	107,874
ATA	72,558
AUU	0
AUC	0
AUA	0
AAA	348,230
AAG	65,813
CTT	111,867
CTC	279,187
CTA	81,098
CTG	81,471
TTA	38,702
TTG	26,993
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	6,300
AUG	0
AAT	13,372
AAC	64,233
AAU	0
CCT	88,776
CCC	119,268
CCA	106,582
CCG	21,750
CCU	0
CAA	47,384
CAG	126,271
CGT	28,922
CGC	1,372
CGA	4,230
CGG	8,982
AGA	65,104
AGG	19,534
CGU	0
TCT	45,557
TCC	33,982
TCA	36,186
TCG	7,020
AGT	46,044
AGC	1,279
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	35,309
ACC	23,075
ACA	34,403
ACG	5,278
ACU	0
GTT	15,467
GTC	14,452
GTA	15,886
GTG	24,221
GUU	0
GUC	0
GUA	0
GUG	0
TGG	77,853
UGG	0
TAT	3,766
TAC	14,053
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,075,239
(17.56%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,689,184

Codon	Codon count
GCT	657,587
GCC	712,053
GCA	600,032
GCG	131,937
GCU	0
TGT	572,378
TGC	10,669
UGU	0
UGC	0
GAT	304,402
GAC	223,362
GAU	0
GAA	703,169
GAG	253,193
TTT	262,513
TTC	282,895
UUU	0
UUC	0
GGT	344,077
GGC	14,376
GGA	86,358
GGG	142,141
GGU	0
CAT	146,696
CAC	315,313
CAU	0
ATT	38,631
ATC	91,660
ATA	51,797
AUU	0
AUC	0
AUA	0
AAA	285,822
AAG	63,801
CTT	103,764
CTC	309,674
CTA	74,810
CTG	96,462
TTA	31,377
TTG	26,339
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	4,559
AUG	0
AAT	9,452
AAC	56,786
AAU	0
CCT	106,319
CCC	148,361
CCA	114,496
CCG	28,953
CCU	0
CAA	40,694
CAG	137,607
CGT	32,517
CGC	2,010
CGA	4,957
CGG	12,164
AGA	58,862
AGG	24,156
CGU	0
TCT	45,196
TCC	35,828
TCA	36,187
TCG	8,325
AGT	45,235
AGC	1,948
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	32,612
ACC	23,221
ACA	30,259
ACG	5,371
ACU	0
GTT	14,083
GTC	14,370
GTA	15,616
GTG	29,148
GUU	0
GUC	0
GUA	0
GUG	0
TGG	82,954
UGG	0
TAT	2,507
TAC	11,672
UAU	0
UAC	0
TAA	0
TAG	0
TGA	1
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,228,042
(17.61%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,237,094

Codon	Codon count
GCT	597,133
GCC	573,730
GCA	579,469
GCG	105,066
GCU	0
TGT	643,735
TGC	8,351
UGU	0
UGC	0
GAT	319,506
GAC	199,142
GAU	0
GAA	711,030
GAG	212,289
TTT	350,484
TTC	317,886
UUU	0
UUC	0
GGT	306,763
GGC	10,529
GGA	76,222
GGG	109,561
GGU	0
CAT	168,051
CAC	300,573
CAU	0
ATT	57,583
ATC	109,793
ATA	74,394
AUU	0
AUC	0
AUA	0
AAA	355,518
AAG	65,985
CTT	111,340
CTC	278,408
CTA	81,656
CTG	78,290
TTA	39,737
TTG	26,257
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	6,100
AUG	0
AAT	13,745
AAC	65,197
AAU	0
CCT	91,478
CCC	116,735
CCA	106,108
CCG	23,092
CCU	0
CAA	47,625
CAG	125,439
CGT	30,533
CGC	1,137
CGA	4,108
CGG	9,585
AGA	65,835
AGG	19,879
CGU	0
TCT	46,674
TCC	35,035
TCA	38,544
TCG	7,230
AGT	46,282
AGC	1,354
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	34,151
ACC	22,967
ACA	35,696
ACG	5,698
ACU	0
GTT	15,462
GTC	14,713
GTA	15,978
GTG	24,324
GUU	0
GUC	0
GUA	0
GUG	0
TGG	77,816
UGG	0
TAT	4,139
TAC	14,585
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,129,919
(17.55%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,342,806

Codon	Codon count
GCT	603,092
GCC	577,866
GCA	577,137
GCG	92,578
GCU	0
TGT	642,406
TGC	7,964
UGU	0
UGC	0
GAT	327,661
GAC	198,848
GAU	0
GAA	713,655
GAG	210,641
TTT	347,936
TTC	316,097
UUU	0
UUC	0
GGT	313,640
GGC	9,249
GGA	76,523
GGG	110,313
GGU	0
CAT	169,120
CAC	301,422
CAU	0
ATT	57,181
ATC	110,183
ATA	75,054
AUU	0
AUC	0
AUA	0
AAA	357,480
AAG	68,767
CTT	113,575
CTC	282,429
CTA	85,087
CTG	81,597
TTA	39,669
TTG	27,533
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	6,297
AUG	0
AAT	13,733
AAC	65,486
AAU	0
CCT	92,480
CCC	116,839
CCA	108,562
CCG	20,064
CCU	0
CAA	47,794
CAG	128,929
CGT	26,634
CGC	1,190
CGA	4,107
CGG	8,649
AGA	68,365
AGG	21,066
CGU	0
TCT	46,086
TCC	33,357
TCA	37,942
TCG	6,134
AGT	48,088
AGC	1,247
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	36,094
ACC	23,623
ACA	34,942
ACG	4,930
ACU	0
GTT	15,226
GTC	14,250
GTA	16,924
GTG	24,901
GUU	0
GUC	0
GUA	0
GUG	0
TGG	79,293
UGG	0
TAT	3,863
TAC	14,939
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,142,595
(17.53%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
28,750,034

Codon	Codon count
GCT	577,569
GCC	532,764
GCA	551,494
GCG	85,400
GCU	0
TGT	642,736
TGC	6,818
UGU	0
UGC	0
GAT	332,618
GAC	185,897
GAU	0
GAA	702,274
GAG	205,939
TTT	361,253
TTC	321,277
UUU	0
UUC	0
GGT	300,272
GGC	8,464
GGA	73,684
GGG	101,842
GGU	0
CAT	169,277
CAC	288,254
CAU	0
ATT	60,456
ATC	113,883
ATA	80,676
AUU	0
AUC	0
AUA	0
AAA	369,358
AAG	67,830
CTT	115,930
CTC	278,173
CTA	87,469
CTG	76,355
TTA	41,749
TTG	27,054
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	6,886
AUG	0
AAT	14,690
AAC	65,061
AAU	0
CCT	86,580
CCC	110,610
CCA	103,967
CCG	18,261
CCU	0
CAA	49,621
CAG	123,869
CGT	23,679
CGC	1,064
CGA	3,598
CGG	7,303
AGA	68,710
AGG	18,910
CGU	0
TCT	45,730
TCC	33,760
TCA	37,328
TCG	6,123
AGT	45,912
AGC	1,124
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	36,447
ACC	23,079
ACA	35,086
ACG	4,673
ACU	0
GTT	15,261
GTC	13,695
GTA	16,265
GTG	22,304
GUU	0
GUC	0
GUA	0
GUG	0
TGG	77,276
UGG	0
TAT	4,240
TAC	15,436
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,040,095
(17.53%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,046,040

Codon	Codon count
GCT	580,582
GCC	531,418
GCA	557,558
GCG	84,070
GCU	0
TGT	657,563
TGC	6,923
UGU	0
UGC	0
GAT	335,873
GAC	184,965
GAU	0
GAA	711,375
GAG	201,237
TTT	377,158
TTC	324,556
UUU	0
UUC	0
GGT	299,062
GGC	7,820
GGA	71,535
GGG	98,702
GGU	0
CAT	173,938
CAC	293,027
CAU	0
ATT	63,439
ATC	117,456
ATA	84,904
AUU	0
AUC	0
AUA	0
AAA	380,786
AAG	69,335
CTT	117,993
CTC	274,640
CTA	86,419
CTG	75,552
TTA	42,925
TTG	27,857
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	7,094
AUG	0
AAT	15,627
AAC	67,286
AAU	0
CCT	85,451
CCC	108,567
CCA	104,514
CCG	18,078
CCU	0
CAA	50,467
CAG	124,393
CGT	24,548
CGC	1,114
CGA	3,563
CGG	7,835
AGA	69,950
AGG	18,040
CGU	0
TCT	46,436
TCC	33,052
TCA	37,713
TCG	5,717
AGT	47,376
AGC	980
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	35,897
ACC	23,048
ACA	36,211
ACG	4,948
ACU	0
GTT	15,982
GTC	14,088
GTA	17,247
GTG	22,133
GUU	0
GUC	0
GUA	0
GUG	0
TGG	78,116
UGG	0
TAT	4,363
TAC	15,778
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,093,200
(17.53%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
28,430,743

Codon	Codon count
GCT	549,378
GCC	481,781
GCA	545,059
GCG	76,618
GCU	0
TGT	665,332
TGC	6,652
UGU	0
UGC	0
GAT	331,636
GAC	176,732
GAU	0
GAA	700,371
GAG	186,826
TTT	395,429
TTC	329,011
UUU	0
UUC	0
GGT	285,225
GGC	7,231
GGA	68,913
GGG	88,436
GGU	0
CAT	175,012
CAC	283,295
CAU	0
ATT	68,755
ATC	121,396
ATA	89,439
AUU	0
AUC	0
AUA	0
AAA	396,678
AAG	68,425
CTT	118,018
CTC	262,451
CTA	87,840
CTG	68,827
TTA	43,604
TTG	27,251
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	7,587
AUG	0
AAT	16,685
AAC	68,302
AAU	0
CCT	80,068
CCC	99,157
CCA	99,712
CCG	16,887
CCU	0
CAA	51,515
CAG	118,437
CGT	23,788
CGC	1,022
CGA	3,321
CGG	6,428
AGA	70,733
AGG	16,987
CGU	0
TCT	45,574
TCC	31,532
TCA	37,262
TCG	5,824
AGT	46,140
AGC	831
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	36,841
ACC	22,357
ACA	37,213
ACG	4,514
ACU	0
GTT	16,171
GTC	13,773
GTA	16,781
GTG	21,415
GUU	0
GUC	0
GUA	0
GUG	0
TGG	75,047
UGG	0
TAT	4,759
TAC	15,962
UAU	0
UAC	0
TAA	0
TAG	1
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 4,976,002
(17.50%)

---

Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
30,432,235

Codon	Codon count
GCT	631,512
GCC	611,046
GCA	609,721
GCG	123,574
GCU	0
TGT	660,182
TGC	9,311
UGU	0
UGC	0
GAT	323,268
GAC	216,308
GAU	0
GAA	741,985
GAG	227,775
TTT	342,772
TTC	322,018
UUU	0
UUC	0
GGT	324,422
GGC	10,942
GGA	83,506
GGG	118,494
GGU	0
CAT	170,435
CAC	320,813
CAU	0
ATT	53,491
ATC	110,556
ATA	70,803
AUU	0
AUC	0
AUA	0
AAA	350,776
AAG	67,203
CTT	110,642
CTC	295,179
CTA	81,533
CTG	83,285
TTA	40,544
TTG	27,014
CUU	0
CUC	0
CUA	0
CUG	0
UUA	0
UUG	0
ATG	5,897
AUG	0
AAT	13,431
AAC	66,706
AAU	0
CCT	98,279
CCC	129,993
CCA	109,762
CCG	26,711
CCU	0
CAA	47,148
CAG	130,001
CGT	34,694
CGC	1,436
CGA	5,032
CGG	11,083
AGA	66,096
AGG	21,208
CGU	0
TCT	49,316
TCC	36,232
TCA	38,734
TCG	7,332
AGT	48,031
AGC	1,535
UCU	0
UCC	0
UCA	0
UCG	0
AGU	0
ACT	35,062
ACC	23,430
ACA	36,849
ACG	6,964
ACU	0
GTT	16,005
GTC	16,149
GTA	17,278
GTG	27,756
GUU	0
GUC	0
GUA	0
GUG	0
TGG	81,008
UGG	0
TAT	3,433
TAC	13,837
UAU	0
UAC	0
TAA	0
TAG	0
TGA	0
UAA	0
UAG	0
UGA	0
UGA	0

Out of frame base-pair
count: 5,335,621
(17.53%)

---