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Friday, May 12, 2023

Pangenome

We tend to think that the scientific data presented to the public is flawless each and every time, but it isn't:

"The human reference genome is the most widely used resource in human genetics and is due for a major update. Its current structure is a linear composite of merged haplotypes from more than 20 people, with a single individual comprising most of the sequence. It contains biases and errors within a framework that does not represent global human genomic variation."

(The Human Pangenome Project, Nature, 2020). But that does not mean the data cannot be improved upon.

That is what the "pangenome" project is all about (The Human Pangenome Reference Consortium).

In a recent series Dredd Blog took a gander at the MetaSUB project (the one that had taken a smorgasbord view of DNA residue at public places in "cities").

"Cities" are where most people now reside in countries all around the globe (MetaSUB, 2, 3, 4, 5, 6, 7).

The MetaSUB DNA data is likely to include Bat, Bird, Bacteria, Human, and other DNA samples mixed together, engendering "chimera" samples (ibid).

Anyway, today the table which was presented in MetaSUB-7 is updated to include the human Pangenome FASTA data as well as updated MetaSUB DNA because the previous MetaSUB data was mRNA due to my mistake.

The updated table:


Australian, Egyptian, and Viking Mummy DNA
Compared To MetaSUB,
Pangenome & Other Modern Human DNA
Codon Australia Egypt Human MetaSUB Pangenome Viking
GCT 2.05% 1.51% 1.10% 0.25% 1.68% 2.06%
GCC 1.94% 2.32% 0.94% 4.27% 1.52% 2.00%
GCA 1.90% 2.03% 1.35% 2.52% 1.64% 1.97%
GCG 0.37% 2.29% 0.22% 4.52% 0.25% 0.36%
GCU 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
TGT 2.29% 1.43% 2.10% 0.44% 2.56% 2.17%
TGC 0.02% 0.13% 0.01% 0.03% 0.02% 0.03%
UGU 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
UGC 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
GAT 1.20% 2.62% 0.85% 0.31% 1.09% 1.10%
GAC 0.56% 0.88% 0.43% 0.56% 0.53% 0.69%
GAU 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
GAA 2.39% 2.90% 1.91% 6.40% 2.21% 2.42%
GAG 0.70% 0.50% 0.58% 0.38% 0.60% 0.74%
TTT 1.09% 0.43% 1.44% 0.03% 1.96% 1.16%
TTC 0.99% 0.67% 1.38% 0.21% 1.24% 1.06%
UUU 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
UUC 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
GGT 1.19% 0.93% 0.66% 0.27% 1.00% 1.07%
GGC 0.04% 0.14% 0.02% 0.66% 0.03% 0.04%
GGA 0.22% 0.29% 0.16% 0.13% 0.20% 0.26%
GGG 0.31% 0.40% 0.22% 0.49% 0.32% 0.38%
Codon Australia Egypt Human MetaSUB Pangenome Viking
GGU 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
CAT 0.61% 0.29% 0.71% 0.05% 0.68% 0.56%
CAC 1.24% 0.91% 0.89% 0.06% 0.97% 1.03%
CAU 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
ATT 0.22% 0.10% 0.21% 0.08% 0.35% 0.19%
ATC 0.41% 0.35% 0.42% 0.15% 0.47% 0.37%
ATA 0.27% 0.15% 0.34% 0.02% 0.51% 0.25%
AUU 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
AUC 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
AUA 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
AAA 1.34% 0.48% 1.24% 2.01% 1.59% 1.19%
AAG 0.22% 0.10% 0.16% 0.01% 0.22% 0.23%
CTT 0.36% 0.15% 0.21% 0.01% 0.42% 0.38%
CTC 1.08% 0.54% 0.70% 0.11% 0.96% 0.97%
CTA 0.24% 0.16% 0.27% 0.07% 0.32% 0.28%
CTG 0.22% 0.14% 0.13% 0.01% 0.21% 0.28%
TTA 0.12% 0.06% 0.13% 0.05% 0.19% 0.13%
TTG 0.10% 0.05% 0.06% 0.00% 0.08% 0.09%
CUU 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
CUC 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
CUA 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
CUG 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
Codon Australia Egypt Human MetaSUB Pangenome Viking
UUA 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
UUG 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
ATG 0.02% 0.01% 0.03% 0.00% 0.03% 0.02%
AUG 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
AAT 0.06% 0.03% 0.06% 0.00% 0.08% 0.05%
AAC 0.20% 0.19% 0.18% 0.04% 0.22% 0.22%
AAU 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
CCT 0.28% 0.12% 0.19% 0.44% 0.27% 0.31%
CCC 0.37% 0.26% 0.29% 0.02% 0.36% 0.41%
CCA 0.31% 0.21% 0.28% 0.03% 0.31% 0.37%
CCG 0.05% 0.26% 0.04% 0.11% 0.05% 0.08%
CCU 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
CAA 0.16% 0.11% 0.15% 0.02% 0.18% 0.16%
CAG 0.47% 0.16% 0.24% 0.02% 0.37% 0.43%
CGT 0.08% 0.37% 0.07% 0.10% 0.08% 0.10%
CGC 0.00% 0.06% 0.00% 0.00% 0.00% 0.00%
CGA 0.02% 0.14% 0.01% 0.01% 0.01% 0.01%
CGG 0.02% 0.12% 0.01% 0.02% 0.02% 0.03%
AGA 0.19% 0.24% 0.25% 0.18% 0.27% 0.22%
AGG 0.05% 0.03% 0.05% 0.00% 0.06% 0.07%
CGU 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
TCT 0.14% 0.37% 0.10% 0.44% 0.15% 0.16%
Codon Australia Egypt Human MetaSUB Pangenome Viking
TCC 0.09% 0.09% 0.07% 0.01% 0.10% 0.12%
TCA 0.15% 0.07% 0.10% 0.00% 0.13% 0.13%
TCG 0.03% 0.53% 0.02% 0.01% 0.02% 0.02%
AGT 0.13% 0.07% 0.09% 0.03% 0.14% 0.16%
AGC 0.00% 0.02% 0.00% 0.00% 0.00% 0.00%
UCU 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
UCC 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
UCA 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
UCG 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
AGU 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
ACT 0.14% 0.05% 0.09% 0.03% 0.13% 0.12%
ACC 0.11% 0.09% 0.06% 0.03% 0.08% 0.08%
ACA 0.12% 0.06% 0.12% 0.00% 0.14% 0.12%
ACG 0.01% 0.06% 0.02% 0.00% 0.02% 0.02%
ACU 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
GTT 0.06% 0.05% 0.03% 0.00% 0.04% 0.05%
GTC 0.04% 0.11% 0.03% 0.00% 0.04% 0.05%
GTA 0.05% 0.07% 0.04% 0.13% 0.06% 0.06%
GTG 0.11% 0.06% 0.06% 0.00% 0.07% 0.09%
GUU 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
GUC 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
GUA 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
Codon Australia Egypt Human MetaSUB Pangenome Viking
GUG 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
TGG 0.28% 0.11% 0.15% 1.99% 0.24% 0.27%
UGG 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
TAT 0.02% 0.01% 0.02% 0.00% 0.03% 0.01%
TAC 0.04% 0.04% 0.04% 0.01% 0.06% 0.05%
UAU 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
UAC 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
TAA 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
TAG 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
TGA 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
UAA 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
UAG 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
UGA 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%

Closing Comments

The pop culture of the upper middle class and wealthy is wild about "ancestry".

But just as the hard-core-scientist-prepared GenBank and the like have errors in them, so do the pop culture data:

"Although some people purchase kits from multiple companies, the majority of people take just one test. Each person who buys genetic analysis from Ancestry, for example, consents to having his/her data become part of Ancestry’s enormous database, which is used to perform the analyses that people pay for. There are some interesting implications to how these databases are built.

First, they are primarily made up of paying customers, which means that the vast majority of genetic datasets in Ancestry’s database come from people who have enough disposable income to purchase the kit and analysis. It may not seem like an important detail, but it shows that the comparison population is not the same as the general population.

Second, because the analyses compare the sample DNA to DNA already in the database, it matters how many people from any given area have taken the test and are in the database. An article in Gizmodo describes one family’s experience with DNA testing and some of the pitfalls. The author quotes a representative from the company 23andMe as saying, “Different companies have different reference data sets and different algorithms, hence the variance in results. Middle Eastern reference populations [for example] are not as well represented as European, an industry-wide challenge.”

The same is true for any population where not many members have taken the test for a particular company. In an interview with NPR about trying to find information about her ancestry, journalist Alex Wagner described a similar problem, saying, “There are not a lot of Burmese people taking DNA tests … and so, the results that were returned were kind of nebulous.”

Wagner’s mother and grandmother both immigrated to the US from Burma in 1965, and when Wagner began investigating her ancestry, she, both of her parents, and her grandmother, all took tests from three different direct-to-consumer DNA testing companies. To Wagner’s surprise, her mother and grandmother both had results that showed they were Mongolian, but none of the results indicated Burmese heritage. In the interview she says that one of the biggest things she learned through doing all these tests was that “a lot of these DNA test companies [are] commercial enterprises. So, they basically purchase or acquire DNA samples on market-demand.”

As it turns out, there aren’t many Burmese people taking DNA tests, so there’s not much reason for the testing companies to pursue having a robust Burmese or even Southeast Asian database of DNA."

(The Problems with Ancestry DNA Analyses). Fortunately, non-genetic historical records such as obituaries and birth records diminish the uncertainty:

"Although it has been studied for many decades, DNA is not entirely understood. There could be significant SNPs that are not evaluated or recognized as important genetic markers. You also might not inherit certain genes that show your Scandinavian heritage even if your siblings have. Even with the best DNA testing, genes are tricky and cannot tell you everything about your family. Some companies (like Ancestry.com) incorporate the use of historical records to increase their ancestry DNA accuracy."

(GenomeLink). Even noted experts in the field disagree on DNA interpretations in various degrees (some of those degrees are hot):

"A New York laboratory has cut its ties with James Watson, the Nobel prize-winning scientist who helped discover the structure of DNA, over 'reprehensible' comments in which he said race and intelligence are connected.

The Cold Spring Harbor Laboratory said it was revoking all titles and honors conferred on Watson, 90, who led the lab for many years.

The lab 'unequivocally rejects the unsubstantiated and reckless personal opinions Dr James D Watson expressed on the subject of ethnicity and genetics', its president, Bruce Stillman, and chair of the board of trustees, Marilyn Simons, said in a statement.

'Dr Watson’s statements are reprehensible, unsupported by science, and in no way represent the views of CSHL, its trustees, faculty, staff, or students. The laboratory condemns the misuse of science to justify prejudice.'”

(Guardian, 2019). The bottom line is "don't bet the farm" on it until you do an exhaustive, detailed investigation.

The video below features experts who detail a lot of myths about DNA (genes) which are prevalent in various cultures.

The next post in this series is here.



Thursday, May 11, 2023

Seaports With Sea Level Change - 30

Fig. 1 CMA CGM Jules Verne

I. Background

Verbal patterns can be as interesting as cloud patterns, star patterns, and hand patterns (Square Finger 'Splainin').

Over the better part of the past couple of decades Dredd Blog has pointed out that in various scenarios one of the most often quoted descriptions of large-scale events is something like "worse than previously thought" (e.g. In Search Of Ocean Heat - 8, The Warming Science Commentariat - 12, Choose Your Trances Carefully - 7).

That media habit continues unabated in a recent report that included the phrase ("faster than previously thought"):

"Such high melt rates concentrated in kilometer-wide grounding zones contrast with the traditional plume model of grounding line melt which predicts zero melt. High rates of simulated basal melting in grounded glacier ice in numerical models will increase the glacier sensitivity to ocean warming and potentially double projections of sea level rise ... Our results have vast implications for the modeling of glaciers terminating in ocean waters." 

(Melt rates in the kilometer-size grounding zone of Petermann Glacier, Greenland, before and during a retreat, PNAS, emphasis added). Not only that, it impacts sea level fall near an ice sheet, which means more than "potentially double projections of sea level rise" in those places when that falling sea level sea water is relocated to (nearer to the equator) by the Earth's gravity, rotation, etc.

The common myth that the impact of sea level change is mainly going to happen to people who live along the coastlines is a diversion from the fact that "more than 95 percent of U.S. international trade moves through the nation's ports and harbors" (NOAA Ports).

That common myth arises from not only the mass media, but also from scientists who are guided by funding and management to "not scare people" (The Extinction of Robust Sea Ports, 2015);

It is not only the media and sleepy scientists who deceive the public, no, business people influence others to act dangerously because those business people prefer ungodly riches over safe harbors of many kinds:

"An influential shipping industry group has quietly warned shippers to think carefully before they sign up for a new plan to reduce pollution and eventually eliminate their contribution to climate change.

The International Chamber of Shipping represents four fifths of the world’s commercial fleet, and in 2021 committed to the Paris Agreement’s target to reduce greenhouse gases down to zero by 2050. “Talk is cheap, action is difficult,” chairman Esben Poulsson said at the time.

But a confidential document obtained by The Associated Press shows the International Chamber of Shipping advised its national branches in March that member companies should 'give careful consideration to the possible implications' before committing to a new plan to reduce maritime emissions."

(AP news, emphasis added). Good on AP news for reporting that.

We can and must all change for the better under the appropriate conditions.

The demise of civilizations has always come about by coordinated efforts by leaders such as the International Chamber of Shipping, urging others to go in a wrong direction (How To Identify The Despotic Minority - 14).

And they are rewarded, in the moment, by cohorts, as they secretly plot otherwise, such as intending "to accelerate the production, transport and use of low-carbon fuels that will be transported by shipping for the world" (ibid).

"Low carbon" is a term used by those who "can't see the forest for the trees", because it's the cumulative amount of carbon used that is causing global warming induced climate change, not the number of carbon atoms in a gallon or liter.

The world population is increasing, so the only way to decrease the amount of greenhouse gases is to stop using carbon containing/polluting substances.

That is, decreasing the amount of carbon per gallon is overcome by the increasing number of gallons used by a growing population (in our current situation).

Thus, the focus must stay on the amount of greenhouse gasses we emit into our atmosphere, and keeping that quantity to a constantly declining amount.

II. Ghostery

The paper just published and quoted from above ("Melt rates in the kilometer-size grounding zone") indicates that melt-rate software models set the parameter for the melt-rate at the grounding line to zero:

"Most ice sheet models employ parameterization of ice melt that assumes zero melt at a grounding line that does not migrate with tides. It has been especially recommended not to apply melt in model mesh elements that cross the grounding line.Prior modeling studies have questioned the assumption of a grounding line with zero melt." 

[so it is no mystery at all why the result they produce is also zero]

"Such high melt rates concentrated in kilometer-wide grounding zones contrast with the traditional plume model of grounding line melt which predicts zero melt."

(ibid). That is one reason Dredd Blog has used the word "ghost water" to refer to the massive amounts of melt taking place at or near the grounding line (The Ghost Plumes, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15; The Ghost Photons, 2, 3; The Ghost-Water Constant, 2, 3, 4, 5, 6, 7, 8, 9).

Eventually NASA cleared up the issue by confirming the phenomenon (NASA Busts The Ghost).

Anyway, in the series "The Ghost Photons" Dredd Blog pointed out that one of the problems the current oceanographers have is that they do not use quantum mechanics nor the current oceanographic standard (TEOS-10) when calculating the thermodynamics of heat flow from seawater into tidewater glaciers.

This problem was further elaborated on in another Dredd Blog series (Quantum Oceanography, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16).

The oceanographers have in the past generally mislead business officials, such as those who influence actions of shipping company executives (International Chamber of Shipping), mentioned in Section I above.

III. Closing Comments

A recent Bureau of Atomic Scientists proclamation, when they were moving the settings of "The Doomsday Clock", fingered the media (including the oceanography media) as actors in the existential threats to civilization:

"On 20 January 2022, the Bulletin of the Atomic Scientists set their infamous Doomsday Clock at 100 seconds to midnight for the third year running. Their accompanying report — entitled ‘At Doom’s Doorstep’ — identified three key factors which brought humanity “the closest it has ever been to civilisation-ending apocalypse.

Two of these factors are unlikely to surprise many readers: namely, climate change and the growing threat of nuclear war. The third might be a little surprising: 'a corrupted information ecosphere that undermines rational decision-making'. Though some media outlets do deal with the concentration of media influence, this is rarely seen as an existential threat."

(Humble Oil-Qaeda - 3, quoting Professor Chomsky, 2023). Yes, bad information in the form of pabulum is an existential threat.

But well before existence is extinguished, it is likely that the sea ports will fail.

The next post in this series is here, the previous post in this series is here.



Tuesday, May 9, 2023

MetaSUB - 7

At Da lab

Let's have some fun with DNA.

The following HTML table shows the percentage of DNA codons in ancient Australians, ancient Egyptians, and ancient Vikings.

It also compares those "mummies" with modern DNA from the MetaSUB project and from GenBank human mitochondrial DNA.

Just for laughs, let's pretend we are scientists wondering how ancient people got to Australia ("The time of arrival of people in Australia is an unresolved question"). 

But, because in our group are some geneticists who notice that the closest matches, percentage-wise, are Australian and Vikings.

Thus, they say, Vikings must have taken the ancient folks to Australia, and since it was such a long trip, along the way they "mingled" with the women that they took there.

And since the Human, Egyptian, and MetaSUB mismatch so much, that proves there are aliens among us (note that the MetaSUB was calculated with mRNA instead of DNA - see Pangenome for the update).

This really is the way some geneticists dream up hypotheses and theories (see the video at the bottom of this post).

The individual groups are presented in the HTML tables following the combined one in the first HTML table below.

The previous post in this series is here.


Australian, Egyptian, and Viking Mummy DNA
Compared To MetaSUB
And Modern Human DNA
Codon Australia Egypt Human MetaSUB Viking
GCT 2.05% 1.51% 1.10% 0.00% 2.06%
GCC 1.94% 2.32% 0.94% 4.27% 2.00%
GCA 1.90% 2.03% 1.35% 2.52% 1.97%
GCG 0.37% 2.29% 0.22% 4.52% 0.36%
GCU 0.00% 0.00% 0.00% 0.25% 0.00%
TGT 2.29% 1.43% 2.10% 0.00% 2.17%
TGC 0.02% 0.13% 0.01% 0.00% 0.03%
UGU 0.00% 0.00% 0.00% 0.44% 0.00%
UGC 0.00% 0.00% 0.00% 0.03% 0.00%
GAT 1.20% 2.62% 0.85% 0.00% 1.10%
GAC 0.56% 0.88% 0.43% 0.56% 0.69%
GAU 0.00% 0.00% 0.00% 0.31% 0.00%
GAA 2.39% 2.90% 1.91% 6.40% 2.42%
GAG 0.70% 0.50% 0.58% 0.38% 0.74%
TTT 1.09% 0.43% 1.44% 0.00% 1.16%
TTC 0.99% 0.67% 1.38% 0.00% 1.06%
UUU 0.00% 0.00% 0.00% 0.03% 0.00%
UUC 0.00% 0.00% 0.00% 0.21% 0.00%
GGT 1.19% 0.93% 0.66% 0.00% 1.07%
GGC 0.04% 0.14% 0.02% 0.66% 0.04%
GGA 0.22% 0.29% 0.16% 0.13% 0.26%
GGG 0.31% 0.40% 0.22% 0.63% 0.38%
GGU 0.00% 0.00% 0.00% 0.12% 0.00%
CAT 0.61% 0.29% 0.71% 0.00% 0.56%
CAC 1.24% 0.91% 0.89% 0.06% 1.03%
CAU 0.00% 0.00% 0.00% 0.05% 0.00%
ATT 0.22% 0.10% 0.21% 0.00% 0.19%
ATC 0.41% 0.35% 0.42% 0.00% 0.37%
ATA 0.27% 0.15% 0.34% 0.00% 0.25%
AUU 0.00% 0.00% 0.00% 0.08% 0.00%
AUC 0.00% 0.00% 0.00% 0.15% 0.00%
AUA 0.00% 0.00% 0.00% 0.02% 0.00%
AAA 1.34% 0.48% 1.24% 2.01% 1.19%
AAG 0.22% 0.10% 0.16% 0.01% 0.23%
CTT 0.36% 0.15% 0.21% 0.00% 0.38%
CTC 1.08% 0.54% 0.70% 0.00% 0.97%
CTA 0.24% 0.16% 0.27% 0.00% 0.28%
CTG 0.22% 0.14% 0.13% 0.00% 0.28%
TTA 0.12% 0.06% 0.13% 0.00% 0.13%
TTG 0.10% 0.05% 0.06% 0.00% 0.09%
CUU 0.00% 0.00% 0.00% 0.01% 0.00%
CUC 0.00% 0.00% 0.00% 0.11% 0.00%
CUA 0.00% 0.00% 0.00% 0.07% 0.00%
CUG 0.00% 0.00% 0.00% 0.01% 0.00%
UUA 0.00% 0.00% 0.00% 0.05% 0.00%
UUG 0.00% 0.00% 0.00% 0.00% 0.00%
ATG 0.02% 0.01% 0.03% 0.00% 0.02%
AUG 0.00% 0.00% 0.00% 0.00% 0.00%
AAT 0.06% 0.03% 0.06% 0.00% 0.05%
AAC 0.20% 0.19% 0.18% 0.04% 0.22%
AAU 0.00% 0.00% 0.00% 0.00% 0.00%
CCT 0.28% 0.12% 0.19% 0.00% 0.31%
CCC 0.37% 0.26% 0.29% 0.45% 0.41%
CCA 0.31% 0.21% 0.28% 0.03% 0.37%
CCG 0.05% 0.26% 0.04% 0.11% 0.08%
CCU 0.00% 0.00% 0.00% 0.02% 0.00%
CAA 0.16% 0.11% 0.15% 0.02% 0.16%
CAG 0.47% 0.16% 0.24% 0.02% 0.43%
CGT 0.08% 0.37% 0.07% 0.00% 0.10%
CGC 0.00% 0.06% 0.00% 0.00% 0.00%
CGA 0.02% 0.14% 0.01% 0.01% 0.01%
CGG 0.02% 0.12% 0.01% 0.02% 0.03%
AGA 0.19% 0.24% 0.25% 0.18% 0.22%
AGG 0.05% 0.03% 0.05% 0.00% 0.07%
CGU 0.00% 0.00% 0.00% 0.10% 0.00%
TCT 0.14% 0.37% 0.10% 0.00% 0.16%
TCC 0.09% 0.09% 0.07% 0.00% 0.12%
TCA 0.15% 0.07% 0.10% 0.00% 0.13%
TCG 0.03% 0.53% 0.02% 0.00% 0.02%
AGT 0.13% 0.07% 0.09% 0.00% 0.16%
AGC 0.00% 0.02% 0.00% 0.00% 0.00%
UCU 0.00% 0.00% 0.00% 0.44% 0.00%
UCC 0.00% 0.00% 0.00% 0.01% 0.00%
UCA 0.00% 0.00% 0.00% 0.00% 0.00%
UCG 0.00% 0.00% 0.00% 0.01% 0.00%
AGU 0.00% 0.00% 0.00% 0.03% 0.00%
ACT 0.14% 0.05% 0.09% 0.00% 0.12%
ACC 0.11% 0.09% 0.06% 0.03% 0.08%
ACA 0.12% 0.06% 0.12% 0.00% 0.12%
ACG 0.01% 0.06% 0.02% 0.00% 0.02%
ACU 0.00% 0.00% 0.00% 0.03% 0.00%
GTT 0.06% 0.05% 0.03% 0.00% 0.05%
GTC 0.04% 0.11% 0.03% 0.00% 0.05%
GTA 0.05% 0.07% 0.04% 0.00% 0.06%
GTG 0.11% 0.06% 0.06% 0.00% 0.09%
GUU 0.00% 0.00% 0.00% 0.00% 0.00%
GUC 0.00% 0.00% 0.00% 0.00% 0.00%
GUA 0.00% 0.00% 0.00% 0.13% 0.00%
GUG 0.00% 0.00% 0.00% 0.00% 0.00%
TGG 0.28% 0.11% 0.15% 0.00% 0.27%
UGG 0.00% 0.00% 0.00% 1.99% 0.00%
TAT 0.02% 0.01% 0.02% 0.00% 0.01%
TAC 0.04% 0.04% 0.04% 0.00% 0.05%
UAU 0.00% 0.00% 0.00% 0.00% 0.00%
UAC 0.00% 0.00% 0.00% 0.01% 0.00%
TAA 0.00% 0.00% 0.00% 0.00% 0.00%
TAG 0.00% 0.00% 0.00% 0.00% 0.00%
TGA 0.00% 0.00% 0.00% 0.00% 0.00%
UAA 0.00% 0.00% 0.00% 0.00% 0.00%
UAG 0.00% 0.00% 0.00% 0.00% 0.00%
UGA 0.00% 0.00% 0.00% 0.00% 0.00%

DNA type: Australia (ancient)
Nucleotides = 16,251,079
Out of Frame = 2,847,907
Codon counts:

GCT: 333,824 (2.05%)
GCC: 315,571 (1.94%)
GCA: 308,513 (1.90%)
GCG: 59,884 (0.37%)
GCU: 0 (0.00%)
TGT: 372,261 (2.29%)
TGC: 3,695 (0.02%)
UGU: 0 (0.00%)
UGC: 0 (0.00%)
GAT: 194,505 (1.20%)
GAC: 91,114 (0.56%)
GAU: 0 (0.00%)
GAA: 387,789 (2.39%)
GAG: 113,573 (0.70%)
TTT: 176,707 (1.09%)
TTC: 160,410 (0.99%)
UUU: 0 (0.00%)
UUC: 0 (0.00%)
GGT: 192,824 (1.19%)
GGC: 6,001 (0.04%)
GGA: 35,979 (0.22%)
GGG: 50,648 (0.31%)
GGU: 0 (0.00%)
CAT: 98,932 (0.61%)
CAC: 201,026 (1.24%)
CAU: 0 (0.00%)
ATT: 35,242 (0.22%)
ATC: 65,862 (0.41%)
ATA: 44,637 (0.27%)
AUU: 0 (0.00%)
AUC: 0 (0.00%)
AUA: 0 (0.00%)
AAA: 217,137 (1.34%)
AAG: 35,698 (0.22%)
CTT: 59,286 (0.36%)
CTC: 174,836 (1.08%)
CTA: 38,916 (0.24%)
CTG: 35,230 (0.22%)
TTA: 19,247 (0.12%)
TTG: 16,006 (0.10%)
CUU: 0 (0.00%)
CUC: 0 (0.00%)
CUA: 0 (0.00%)
CUG: 0 (0.00%)
UUA: 0 (0.00%)
UUG: 0 (0.00%)
ATG: 3,950 (0.02%)
AUG: 0 (0.00%)
AAT: 9,378 (0.06%)
AAC: 32,808 (0.20%)
AAU: 0 (0.00%)
CCT: 45,117 (0.28%)
CCC: 60,808 (0.37%)
CCA: 50,524 (0.31%)
CCG: 8,825 (0.05%)
CCU: 0 (0.00%)
CAA: 26,499 (0.16%)
CAG: 76,868 (0.47%)
CGT: 13,292 (0.08%)
CGC: 649 (0.00%)
CGA: 2,633 (0.02%)
CGG: 3,517 (0.02%)
AGA: 31,512 (0.19%)
AGG: 8,846 (0.05%)
CGU: 0 (0.00%)
TCT: 22,403 (0.14%)
TCC: 15,154 (0.09%)
TCA: 24,591 (0.15%)
TCG: 5,202 (0.03%)
AGT: 20,646 (0.13%)
AGC: 368 (0.00%)
UCU: 0 (0.00%)
UCC: 0 (0.00%)
UCA: 0 (0.00%)
UCG: 0 (0.00%)
AGU: 0 (0.00%)
ACT: 22,832 (0.14%)
ACC: 17,754 (0.11%)
ACA: 18,903 (0.12%)
ACG: 2,350 (0.01%)
ACU: 0 (0.00%)
GTT: 9,885 (0.06%)
GTC: 6,781 (0.04%)
GTA: 7,352 (0.05%)
GTG: 17,682 (0.11%)
GUU: 0 (0.00%)
GUC: 0 (0.00%)
GUA: 0 (0.00%)
GUG: 0 (0.00%)
TGG: 46,068 (0.28%)
UGG: 0 (0.00%)
TAT: 2,578 (0.02%)
TAC: 6,596 (0.04%)
UAU: 0 (0.00%)
UAC: 0 (0.00%)
TAA: 0 (0.00%)
TAG: 0 (0.00%)
TGA: 0 (0.00%)
UAA: 0 (0.00%)
UAG: 0 (0.00%)
UGA: 0 (0.00%)


DNA type: Egypt (ancient)
Nucleotides = 17,506,756
Out of Frame = 3,279,115
Codon counts:

GCT: 264,423 (1.51%)
GCC: 406,405 (2.32%)
GCA: 354,753 (2.03%)
GCG: 401,169 (2.29%)
GCU: 0 (0.00%)
TGT: 250,048 (1.43%)
TGC: 23,482 (0.13%)
UGU: 0 (0.00%)
UGC: 0 (0.00%)
GAT: 458,875 (2.62%)
GAC: 153,319 (0.88%)
GAU: 0 (0.00%)
GAA: 507,423 (2.90%)
GAG: 86,866 (0.50%)
TTT: 74,417 (0.43%)
TTC: 118,136 (0.67%)
UUU: 0 (0.00%)
UUC: 0 (0.00%)
GGT: 162,048 (0.93%)
GGC: 25,018 (0.14%)
GGA: 51,339 (0.29%)
GGG: 70,682 (0.40%)
GGU: 0 (0.00%)
CAT: 50,008 (0.29%)
CAC: 159,264 (0.91%)
CAU: 0 (0.00%)
ATT: 17,209 (0.10%)
ATC: 61,698 (0.35%)
ATA: 26,132 (0.15%)
AUU: 0 (0.00%)
AUC: 0 (0.00%)
AUA: 0 (0.00%)
AAA: 83,242 (0.48%)
AAG: 17,591 (0.10%)
CTT: 26,916 (0.15%)
CTC: 94,554 (0.54%)
CTA: 28,380 (0.16%)
CTG: 24,742 (0.14%)
TTA: 10,909 (0.06%)
TTG: 7,904 (0.05%)
CUU: 0 (0.00%)
CUC: 0 (0.00%)
CUA: 0 (0.00%)
CUG: 0 (0.00%)
UUA: 0 (0.00%)
UUG: 0 (0.00%)
ATG: 1,747 (0.01%)
AUG: 0 (0.00%)
AAT: 4,535 (0.03%)
AAC: 32,410 (0.19%)
AAU: 0 (0.00%)
CCT: 20,816 (0.12%)
CCC: 45,266 (0.26%)
CCA: 37,116 (0.21%)
CCG: 45,302 (0.26%)
CCU: 0 (0.00%)
CAA: 19,494 (0.11%)
CAG: 28,171 (0.16%)
CGT: 65,489 (0.37%)
CGC: 10,109 (0.06%)
CGA: 24,159 (0.14%)
CGG: 20,996 (0.12%)
AGA: 41,354 (0.24%)
AGG: 4,747 (0.03%)
CGU: 0 (0.00%)
TCT: 65,354 (0.37%)
TCC: 15,427 (0.09%)
TCA: 12,084 (0.07%)
TCG: 93,251 (0.53%)
AGT: 11,532 (0.07%)
AGC: 3,244 (0.02%)
UCU: 0 (0.00%)
UCC: 0 (0.00%)
UCA: 0 (0.00%)
UCG: 0 (0.00%)
AGU: 0 (0.00%)
ACT: 7,881 (0.05%)
ACC: 15,262 (0.09%)
ACA: 11,295 (0.06%)
ACG: 10,175 (0.06%)
ACU: 0 (0.00%)
GTT: 8,498 (0.05%)
GTC: 20,074 (0.11%)
GTA: 12,420 (0.07%)
GTG: 9,762 (0.06%)
GUU: 0 (0.00%)
GUC: 0 (0.00%)
GUA: 0 (0.00%)
GUG: 0 (0.00%)
TGG: 19,665 (0.11%)
UGG: 0 (0.00%)
TAT: 1,151 (0.01%)
TAC: 6,809 (0.04%)
UAU: 0 (0.00%)
UAC: 0 (0.00%)
TAA: 0 (0.00%)
TAG: 0 (0.00%)
TGA: 0 (0.00%)
UAA: 0 (0.00%)
UAG: 0 (0.00%)
UGA: 0 (0.00%)


DNA type: Human (modern @laboratory)
Nucleotides = 346,893
Out of Frame = 120,626
Codon counts:

GCT: 3,825 (1.10%)
GCC: 3,271 (0.94%)
GCA: 4,698 (1.35%)
GCG: 759 (0.22%)
GCU: 0 (0.00%)
TGT: 7,273 (2.10%)
TGC: 47 (0.01%)
UGU: 0 (0.00%)
UGC: 0 (0.00%)
GAT: 2,943 (0.85%)
GAC: 1,504 (0.43%)
GAU: 0 (0.00%)
GAA: 6,613 (1.91%)
GAG: 2,007 (0.58%)
TTT: 4,997 (1.44%)
TTC: 4,804 (1.38%)
UUU: 0 (0.00%)
UUC: 0 (0.00%)
GGT: 2,297 (0.66%)
GGC: 59 (0.02%)
GGA: 545 (0.16%)
GGG: 760 (0.22%)
GGU: 0 (0.00%)
CAT: 2,472 (0.71%)
CAC: 3,100 (0.89%)
CAU: 0 (0.00%)
ATT: 723 (0.21%)
ATC: 1,465 (0.42%)
ATA: 1,173 (0.34%)
AUU: 0 (0.00%)
AUC: 0 (0.00%)
AUA: 0 (0.00%)
AAA: 4,305 (1.24%)
AAG: 570 (0.16%)
CTT: 720 (0.21%)
CTC: 2,442 (0.70%)
CTA: 937 (0.27%)
CTG: 461 (0.13%)
TTA: 449 (0.13%)
TTG: 203 (0.06%)
CUU: 0 (0.00%)
CUC: 0 (0.00%)
CUA: 0 (0.00%)
CUG: 0 (0.00%)
UUA: 0 (0.00%)
UUG: 0 (0.00%)
ATG: 103 (0.03%)
AUG: 0 (0.00%)
AAT: 195 (0.06%)
AAC: 613 (0.18%)
AAU: 0 (0.00%)
CCT: 665 (0.19%)
CCC: 999 (0.29%)
CCA: 966 (0.28%)
CCG: 154 (0.04%)
CCU: 0 (0.00%)
CAA: 520 (0.15%)
CAG: 816 (0.24%)
CGT: 227 (0.07%)
CGC: 6 (0.00%)
CGA: 30 (0.01%)
CGG: 50 (0.01%)
AGA: 861 (0.25%)
AGG: 174 (0.05%)
CGU: 0 (0.00%)
TCT: 364 (0.10%)
TCC: 240 (0.07%)
TCA: 338 (0.10%)
TCG: 64 (0.02%)
AGT: 311 (0.09%)
AGC: 2 (0.00%)
UCU: 0 (0.00%)
UCC: 0 (0.00%)
UCA: 0 (0.00%)
UCG: 0 (0.00%)
AGU: 0 (0.00%)
ACT: 302 (0.09%)
ACC: 211 (0.06%)
ACA: 430 (0.12%)
ACG: 55 (0.02%)
ACU: 0 (0.00%)
GTT: 100 (0.03%)
GTC: 104 (0.03%)
GTA: 150 (0.04%)
GTG: 196 (0.06%)
GUU: 0 (0.00%)
GUC: 0 (0.00%)
GUA: 0 (0.00%)
GUG: 0 (0.00%)
TGG: 534 (0.15%)
UGG: 0 (0.00%)
TAT: 59 (0.02%)
TAC: 146 (0.04%)
UAU: 0 (0.00%)
UAC: 0 (0.00%)
TAA: 2 (0.00%)
TAG: 0 (0.00%)
TGA: 0 (0.00%)
UAA: 0 (0.00%)
UAG: 0 (0.00%)
UGA: 0 (0.00%)


DNA type: MetaSUB (city public places)
Nucleotides = 1,357,395
Out of Frame = 225,948
Codon counts:

GCT: 0 (0.00%)
GCC: 57,897 (4.27%)
GCA: 34,185 (2.52%)
GCG: 61,388 (4.52%)
GCU: 3,428 (0.25%)
TGT: 0 (0.00%)
TGC: 0 (0.00%)
UGU: 6,034 (0.44%)
UGC: 439 (0.03%)
GAT: 0 (0.00%)
GAC: 7,655 (0.56%)
GAU: 4,213 (0.31%)
GAA: 86,820 (6.40%)
GAG: 5,209 (0.38%)
TTT: 0 (0.00%)
TTC: 0 (0.00%)
UUU: 449 (0.03%)
UUC: 2,814 (0.21%)
GGT: 0 (0.00%)
GGC: 8,953 (0.66%)
GGA: 1,719 (0.13%)
GGG: 8,594 (0.63%)
GGU: 1,650 (0.12%)
CAT: 0 (0.00%)
CAC: 859 (0.06%)
CAU: 625 (0.05%)
ATT: 0 (0.00%)
ATC: 0 (0.00%)
ATA: 0 (0.00%)
AUU: 1,135 (0.08%)
AUC: 2,048 (0.15%)
AUA: 260 (0.02%)
AAA: 27,219 (2.01%)
AAG: 154 (0.01%)
CTT: 0 (0.00%)
CTC: 0 (0.00%)
CTA: 0 (0.00%)
CTG: 0 (0.00%)
TTA: 0 (0.00%)
TTG: 0 (0.00%)
CUU: 134 (0.01%)
CUC: 1,485 (0.11%)
CUA: 1,006 (0.07%)
CUG: 126 (0.01%)
UUA: 639 (0.05%)
UUG: 9 (0.00%)
ATG: 0 (0.00%)
AUG: 6 (0.00%)
AAT: 0 (0.00%)
AAC: 573 (0.04%)
AAU: 4 (0.00%)
CCT: 0 (0.00%)
CCC: 6,123 (0.45%)
CCA: 423 (0.03%)
CCG: 1,545 (0.11%)
CCU: 229 (0.02%)
CAA: 212 (0.02%)
CAG: 247 (0.02%)
CGT: 0 (0.00%)
CGC: 0 (0.00%)
CGA: 88 (0.01%)
CGG: 240 (0.02%)
AGA: 2,482 (0.18%)
AGG: 7 (0.00%)
CGU: 1,380 (0.10%)
TCT: 0 (0.00%)
TCC: 0 (0.00%)
TCA: 0 (0.00%)
TCG: 0 (0.00%)
AGT: 0 (0.00%)
AGC: 1 (0.00%)
UCU: 6,013 (0.44%)
UCC: 171 (0.01%)
UCA: 55 (0.00%)
UCG: 104 (0.01%)
AGU: 363 (0.03%)
ACT: 0 (0.00%)
ACC: 349 (0.03%)
ACA: 25 (0.00%)
ACG: 15 (0.00%)
ACU: 362 (0.03%)
GTT: 0 (0.00%)
GTC: 0 (0.00%)
GTA: 0 (0.00%)
GTG: 0 (0.00%)
GUU: 30 (0.00%)
GUC: 24 (0.00%)
GUA: 1,742 (0.13%)
GUG: 11 (0.00%)
TGG: 0 (0.00%)
UGG: 26,994 (1.99%)
TAT: 0 (0.00%)
TAC: 0 (0.00%)
UAU: 2 (0.00%)
UAC: 176 (0.01%)
TAA: 0 (0.00%)
TAG: 0 (0.00%)
TGA: 0 (0.00%)
UAA: 0 (0.00%)
UAG: 0 (0.00%)
UGA: 7 (0.00%)


DNA type: Viking (ancient)
Nucleotides = 1,073,506,904
Out of Frame = 188,339,423
Codon counts:

GCT: 22,131,265 (2.06%)
GCC: 21,516,999 (2.00%)
GCA: 21,194,650 (1.97%)
GCG: 3,915,623 (0.36%)
GCU: 0 (0.00%)
TGT: 23,290,278 (2.17%)
TGC: 312,880 (0.03%)
UGU: 0 (0.00%)
UGC: 0 (0.00%)
GAT: 11,801,428 (1.10%)
GAC: 7,362,939 (0.69%)
GAU: 0 (0.00%)
GAA: 26,028,899 (2.42%)
GAG: 7,905,229 (0.74%)
TTT: 12,506,124 (1.16%)
TTC: 11,428,779 (1.06%)
UUU: 0 (0.00%)
UUC: 0 (0.00%)
GGT: 11,490,635 (1.07%)
GGC: 386,550 (0.04%)
GGA: 2,823,311 (0.26%)
GGG: 4,112,333 (0.38%)
GGU: 0 (0.00%)
CAT: 6,064,034 (0.56%)
CAC: 11,039,403 (1.03%)
CAU: 0 (0.00%)
ATT: 2,026,644 (0.19%)
ATC: 3,996,467 (0.37%)
ATA: 2,666,988 (0.25%)
AUU: 0 (0.00%)
AUC: 0 (0.00%)
AUA: 0 (0.00%)
AAA: 12,793,731 (1.19%)
AAG: 2,426,922 (0.23%)
CTT: 4,065,784 (0.38%)
CTC: 10,372,981 (0.97%)
CTA: 3,014,003 (0.28%)
CTG: 2,973,702 (0.28%)
TTA: 1,430,568 (0.13%)
TTG: 991,040 (0.09%)
CUU: 0 (0.00%)
CUC: 0 (0.00%)
CUA: 0 (0.00%)
CUG: 0 (0.00%)
UUA: 0 (0.00%)
UUG: 0 (0.00%)
ATG: 224,972 (0.02%)
AUG: 0 (0.00%)
AAT: 500,181 (0.05%)
AAC: 2,367,168 (0.22%)
AAU: 0 (0.00%)
CCT: 3,362,909 (0.31%)
CCC: 4,441,582 (0.41%)
CCA: 3,948,427 (0.37%)
CCG: 844,512 (0.08%)
CCU: 0 (0.00%)
CAA: 1,732,442 (0.16%)
CAG: 4,669,716 (0.43%)
CGT: 1,082,491 (0.10%)
CGC: 49,993 (0.00%)
CGA: 155,888 (0.01%)
CGG: 351,766 (0.03%)
AGA: 2,411,371 (0.22%)
AGG: 740,961 (0.07%)
CGU: 0 (0.00%)
TCT: 1,698,673 (0.16%)
TCC: 1,253,167 (0.12%)
TCA: 1,365,858 (0.13%)
TCG: 256,937 (0.02%)
AGT: 1,691,463 (0.16%)
AGC: 50,437 (0.00%)
UCU: 0 (0.00%)
UCC: 0 (0.00%)
UCA: 0 (0.00%)
UCG: 0 (0.00%)
AGU: 0 (0.00%)
ACT: 1,276,020 (0.12%)
ACC: 851,175 (0.08%)
ACA: 1,275,031 (0.12%)
ACG: 202,466 (0.02%)
ACU: 0 (0.00%)
GTT: 569,495 (0.05%)
GTC: 539,632 (0.05%)
GTA: 605,214 (0.06%)
GTG: 918,820 (0.09%)
GUU: 0 (0.00%)
GUC: 0 (0.00%)
GUA: 0 (0.00%)
GUG: 0 (0.00%)
TGG: 2,889,548 (0.27%)
UGG: 0 (0.00%)
TAT: 137,160 (0.01%)
TAC: 520,156 (0.05%)
UAU: 0 (0.00%)
UAC: 0 (0.00%)
TAA: 0 (0.00%)
TAG: 1 (0.00%)
TGA: 6 (0.00%)
UAA: 0 (0.00%)
UAG: 0 (0.00%)
UGA: 0 (0.00%)

Sunday, May 7, 2023

Ancient Ecocosmology - 2

A letter from Goober (c. 1404)


I. Background

The first post of this series (year 2011) focused on the difficulties with the interpretation of ancient writings (Ancient Ecocosmology?).

Then an update within that post focused on how AI was also trying to figure it out too (ibid).

Several Dredd Blog posts have noticed that the same problem exists when trying to decipher ancient DNA, and somewhat recent DNA too for that matter (e.g. MetaSUB, 2, 3, 4, 5, 6).

While I was reading about Vikings a day or so ago, there was an article about how DNA was extracted from a Viking "mummy" and the excruciating pains taken by several adventurous scientists to "read the tea leaves" of time (e.g. Cell).

Eventually, I downloaded some relevant Viking genetic material from a government repository (NCBI).

II. Today's Appendix

I did some analysis of the Viking data set forth in the government database, and then used several HTML tables to display that data (Appendix).

The articles and papers I read indicated that quite a bit of software band-aids, connectors, and insertions were used on the sampled Viking DNA, which helped me to focus on a problem in the MetaSUB sequences:

"It also specifies the percentage of those out-of-frame elements, which said percentages seem very mechanical rather than random as one would expect of random samples in random locations around the globe.

Which leads me to the suspicion that their use of software, whether AI or otherwise, is involved the their data production."

(MetaSUB - 6).  Both the Viking DNA and the MetaSUB City Dweller DNA have mechanical looking "out-of-frame" percentages (ratio of out-of-frame nucleotides to in-frame nucleotides).

They appear at the bottom of each table as:

"Out of frame base-pair
count: 5,112,554
(17.53%
)"

(see appendix). In other words since "out-of-frame" nucleotides are often interpreted as "mutations", and since random genetic mutations are not mechanical to that degree, I think that the use of software (including hallucinating AI) is the cause of those mechanical looking percentages.

III. Closing Comments

I am often reminded of the professor who uses the phrase "we don't know" in circumstances where we really do not know (see video below).

It is much more honest and scientific than making things up as children do when they are playing with dolls.

The previous post in this series is here.



AE Appendix

This is an appendix to Ancient Ecocosmology - 2


The extremely large DNA file had to be separated into smaller (1 gibabyte) sections. Each section is depicted in the following HTML tables.



Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,167,463
Codon Codon count
GCT 588,540
GCC 532,854
GCA 573,264
GCG 85,938
GCU 0
TGT 659,789
TGC 7,165
UGU 0
UGC 0
GAT 333,458
GAC 189,719
GAU 0
GAA 715,823
GAG 201,963
TTT 372,479
TTC 325,808
UUU 0
UUC 0
GGT 300,527
GGC 7,931
GGA 73,962
GGG 100,311
GGU 0
CAT 176,573
CAC 293,181
CAU 0
ATT 63,187
ATC 116,035
ATA 82,401
AUU 0
AUC 0
AUA 0
AAA 374,662
AAG 68,579
CTT 115,601
CTC 269,932
CTA 87,113
CTG 76,129
TTA 42,761
TTG 27,748
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 6,841
AUG 0
AAT 15,747
AAC 67,742
AAU 0
CCT 89,301
CCC 108,678
CCA 105,661
CCG 18,477
CCU 0
CAA 50,937
CAG 125,485
CGT 25,737
CGC 978
CGA 3,466
CGG 7,617
AGA 70,337
AGG 18,693
CGU 0
TCT 47,289
TCC 33,335
TCA 37,265
TCG 5,855
AGT 47,327
AGC 1,284
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 35,678
ACC 22,914
ACA 36,263
ACG 4,935
ACU 0
GTT 16,247
GTC 14,341
GTA 17,054
GTG 22,833
GUU 0
GUC 0
GUA 0
GUG 0
TGG 76,895
UGG 0
TAT 4,284
TAC 15,374
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,112,554
(17.53%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,780,232
Codon Codon count
GCT 624,104
GCC 645,380
GCA 593,381
GCG 140,490
GCU 0
TGT 625,904
TGC 10,273
UGU 0
UGC 0
GAT 310,870
GAC 216,587
GAU 0
GAA 711,152
GAG 230,539
TTT 315,296
TTC 298,396
UUU 0
UUC 0
GGT 328,382
GGC 14,590
GGA 78,864
GGG 127,857
GGU 0
CAT 159,330
CAC 312,179
CAU 0
ATT 50,656
ATC 104,815
ATA 65,990
AUU 0
AUC 0
AUA 0
AAA 327,013
AAG 64,311
CTT 105,177
CTC 293,657
CTA 76,434
CTG 85,046
TTA 36,117
TTG 26,793
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 5,604
AUG 0
AAT 12,674
AAC 61,907
AAU 0
CCT 96,013
CCC 135,789
CCA 110,115
CCG 29,264
CCU 0
CAA 44,296
CAG 130,135
CGT 35,246
CGC 1,827
CGA 4,923
CGG 12,876
AGA 62,399
AGG 21,074
CGU 0
TCT 46,080
TCC 34,586
TCA 36,823
TCG 8,545
AGT 45,071
AGC 1,640
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 33,968
ACC 23,291
ACA 33,746
ACG 6,411
ACU 0
GTT 15,297
GTC 15,701
GTA 16,616
GTG 27,559
GUU 0
GUC 0
GUA 0
GUG 0
TGG 80,263
UGG 0
TAT 3,268
TAC 12,978
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,223,528
(17.54%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,706,255
Codon Codon count
GCT 634,235
GCC 655,761
GCA 595,379
GCG 131,815
GCU 0
TGT 615,754
TGC 10,539
UGU 0
UGC 0
GAT 307,357
GAC 216,850
GAU 0
GAA 711,835
GAG 232,781
TTT 307,150
TTC 297,555
UUU 0
UUC 0
GGT 328,796
GGC 13,555
GGA 81,140
GGG 127,576
GGU 0
CAT 156,124
CAC 311,098
CAU 0
ATT 46,244
ATC 100,256
ATA 61,713
AUU 0
AUC 0
AUA 0
AAA 317,988
AAG 64,098
CTT 105,514
CTC 296,493
CTA 76,039
CTG 87,914
TTA 36,071
TTG 26,543
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 5,204
AUG 0
AAT 11,977
AAC 61,307
AAU 0
CCT 98,002
CCC 135,715
CCA 111,852
CCG 28,976
CCU 0
CAA 44,530
CAG 131,513
CGT 34,727
CGC 1,666
CGA 5,053
CGG 12,209
AGA 62,271
AGG 22,167
CGU 0
TCT 46,149
TCC 35,505
TCA 36,056
TCG 8,200
AGT 45,044
AGC 1,751
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 33,175
ACC 23,943
ACA 33,288
ACG 6,601
ACU 0
GTT 15,120
GTC 15,480
GTA 16,369
GTG 27,449
GUU 0
GUC 0
GUA 0
GUG 0
TGG 82,525
UGG 0
TAT 3,036
TAC 12,990
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,214,186
(17.55%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
30,196,172
Codon Codon count
GCT 655,969
GCC 697,129
GCA 605,469
GCG 144,811
GCU 0
TGT 603,659
TGC 11,255
UGU 0
UGC 0
GAT 314,328
GAC 220,671
GAU 0
GAA 717,709
GAG 243,938
TTT 289,470
TTC 297,740
UUU 0
UUC 0
GGT 345,410
GGC 15,063
GGA 84,194
GGG 134,608
GGU 0
CAT 150,287
CAC 319,392
CAU 0
ATT 42,410
ATC 98,179
ATA 55,902
AUU 0
AUC 0
AUA 0
AAA 305,613
AAG 63,923
CTT 106,635
CTC 310,269
CTA 77,448
CTG 92,839
TTA 33,742
TTG 27,080
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 4,882
AUG 0
AAT 10,552
AAC 61,788
AAU 0
CCT 101,620
CCC 144,429
CCA 115,720
CCG 31,494
CCU 0
CAA 42,610
CAG 135,464
CGT 36,516
CGC 1,844
CGA 5,330
CGG 12,930
AGA 60,248
AGG 23,213
CGU 0
TCT 45,671
TCC 35,530
TCA 36,637
TCG 9,049
AGT 45,292
AGC 1,838
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 33,093
ACC 24,411
ACA 31,671
ACG 6,394
ACU 0
GTT 15,671
GTC 15,398
GTA 15,938
GTG 30,407
GUU 0
GUC 0
GUA 0
GUG 0
TGG 81,773
UGG 0
TAT 2,630
TAC 12,525
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,303,042
(17.56%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,082,275
Codon Codon count
GCT 577,660
GCC 523,949
GCA 575,250
GCG 97,301
GCU 0
TGT 666,924
TGC 7,399
UGU 0
UGC 0
GAT 324,997
GAC 192,238
GAU 0
GAA 715,412
GAG 200,230
TTT 377,639
TTC 326,894
UUU 0
UUC 0
GGT 296,191
GGC 9,011
GGA 73,068
GGG 98,161
GGU 0
CAT 174,346
CAC 297,506
CAU 0
ATT 62,879
ATC 116,841
ATA 81,032
AUU 0
AUC 0
AUA 0
AAA 377,529
AAG 66,671
CTT 112,979
CTC 266,687
CTA 84,658
CTG 72,614
TTA 42,006
TTG 26,897
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 6,698
AUG 0
AAT 15,618
AAC 67,895
AAU 0
CCT 85,392
CCC 107,906
CCA 103,700
CCG 21,421
CCU 0
CAA 48,559
CAG 120,643
CGT 29,305
CGC 1,095
CGA 3,938
CGG 8,548
AGA 68,591
AGG 18,420
CGU 0
TCT 47,467
TCC 33,126
TCA 37,427
TCG 6,575
AGT 46,624
AGC 1,132
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 35,734
ACC 22,897
ACA 36,566
ACG 5,924
ACU 0
GTT 16,272
GTC 15,423
GTA 16,937
GTG 23,756
GUU 0
GUC 0
GUA 0
GUG 0
TGG 75,027
UGG 0
TAT 4,303
TAC 14,962
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,103,725
(17.55%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,968,823
Codon Codon count
GCT 618,806
GCC 590,358
GCA 596,130
GCG 106,147
GCU 0
TGT 658,092
TGC 8,275
UGU 0
UGC 0
GAT 330,643
GAC 203,434
GAU 0
GAA 736,748
GAG 220,253
TTT 350,388
TTC 321,520
UUU 0
UUC 0
GGT 316,678
GGC 9,504
GGA 79,805
GGG 110,392
GGU 0
CAT 168,548
CAC 307,182
CAU 0
ATT 56,483
ATC 112,007
ATA 74,004
AUU 0
AUC 0
AUA 0
AAA 357,452
AAG 67,982
CTT 112,998
CTC 288,730
CTA 85,023
CTG 82,415
TTA 41,422
TTG 27,997
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 6,254
AUG 0
AAT 13,723
AAC 65,894
AAU 0
CCT 94,026
CCC 119,767
CCA 109,054
CCG 23,516
CCU 0
CAA 49,119
CAG 131,859
CGT 30,416
CGC 1,266
CGA 4,479
CGG 9,658
AGA 67,959
AGG 20,356
CGU 0
TCT 47,896
TCC 35,585
TCA 38,835
TCG 7,111
AGT 47,734
AGC 1,421
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 35,026
ACC 23,699
ACA 35,807
ACG 5,701
ACU 0
GTT 16,022
GTC 15,443
GTA 17,544
GTG 25,782
GUU 0
GUC 0
GUA 0
GUG 0
TGG 80,340
UGG 0
TAT 3,928
TAC 14,331
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,251,922
(17.52%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
31,235,624
Codon Codon count
GCT 690,019
GCC 744,805
GCA 642,755
GCG 148,268
GCU 0
TGT 620,301
TGC 11,186
UGU 0
UGC 0
GAT 306,750
GAC 240,702
GAU 0
GAA 741,918
GAG 254,793
TTT 282,326
TTC 296,132
UUU 0
UUC 0
GGT 361,530
GGC 14,629
GGA 88,893
GGG 147,221
GGU 0
CAT 155,221
CAC 337,413
CAU 0
ATT 41,254
ATC 94,843
ATA 54,574
AUU 0
AUC 0
AUA 0
AAA 295,969
AAG 64,124
CTT 104,469
CTC 314,424
CTA 74,219
CTG 100,190
TTA 33,885
TTG 26,741
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 4,793
AUG 0
AAT 10,631
AAC 61,189
AAU 0
CCT 111,534
CCC 152,485
CCA 120,559
CCG 33,591
CCU 0
CAA 42,621
CAG 142,147
CGT 39,691
CGC 1,659
CGA 5,481
CGG 14,564
AGA 61,302
AGG 25,877
CGU 0
TCT 49,222
TCC 38,838
TCA 36,941
TCG 9,259
AGT 47,984
AGC 2,235
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 32,957
ACC 23,927
ACA 33,423
ACG 7,086
ACU 0
GTT 14,677
GTC 16,865
GTA 16,006
GTG 31,997
GUU 0
GUC 0
GUA 0
GUG 0
TGG 88,425
UGG 0
TAT 2,480
TAC 11,598
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,490,830
(17.58%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,921,243
Codon Codon count
GCT 627,133
GCC 665,445
GCA 589,140
GCG 140,525
GCU 0
TGT 614,944
TGC 10,628
UGU 0
UGC 0
GAT 311,338
GAC 220,774
GAU 0
GAA 715,951
GAG 241,883
TTT 292,200
TTC 293,157
UUU 0
UUC 0
GGT 342,389
GGC 14,126
GGA 82,016
GGG 131,390
GGU 0
CAT 157,225
CAC 323,581
CAU 0
ATT 44,209
ATC 101,592
ATA 59,553
AUU 0
AUC 0
AUA 0
AAA 313,752
AAG 64,213
CTT 103,980
CTC 312,429
CTA 77,258
CTG 89,931
TTA 33,333
TTG 26,008
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 5,257
AUG 0
AAT 11,868
AAC 62,118
AAU 0
CCT 100,216
CCC 143,887
CCA 113,114
CCG 27,908
CCU 0
CAA 44,309
CAG 135,011
CGT 34,754
CGC 2,282
CGA 4,988
CGG 12,474
AGA 60,942
AGG 23,065
CGU 0
TCT 45,368
TCC 35,408
TCA 37,258
TCG 8,316
AGT 44,794
AGC 1,796
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 33,963
ACC 23,677
ACA 32,916
ACG 6,196
ACU 0
GTT 15,641
GTC 15,473
GTA 15,976
GTG 29,321
GUU 0
GUC 0
GUA 0
GUG 0
TGG 82,389
UGG 0
TAT 2,909
TAC 12,394
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,242,970
(17.52%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
30,201,462
Codon Codon count
GCT 628,248
GCC 619,616
GCA 597,094
GCG 115,164
GCU 0
TGT 641,151
TGC 9,083
UGU 0
UGC 0
GAT 328,975
GAC 210,168
GAU 0
GAA 735,315
GAG 228,881
TTT 339,271
TTC 318,805
UUU 0
UUC 0
GGT 328,853
GGC 11,526
GGA 80,091
GGG 118,237
GGU 0
CAT 166,014
CAC 310,863
CAU 0
ATT 53,236
ATC 108,150
ATA 69,382
AUU 0
AUC 0
AUA 0
AAA 348,016
AAG 67,123
CTT 114,781
CTC 300,619
CTA 84,056
CTG 84,919
TTA 39,399
TTG 27,952
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 5,900
AUG 0
AAT 13,099
AAC 65,440
AAU 0
CCT 97,321
CCC 128,254
CCA 113,198
CCG 24,846
CCU 0
CAA 47,948
CAG 131,774
CGT 30,557
CGC 1,533
CGA 4,419
CGG 10,353
AGA 65,639
AGG 21,401
CGU 0
TCT 48,782
TCC 36,995
TCA 38,889
TCG 7,403
AGT 47,675
AGC 1,495
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 35,422
ACC 24,692
ACA 35,219
ACG 5,721
ACU 0
GTT 15,857
GTC 14,497
GTA 17,103
GTG 25,033
GUU 0
GUC 0
GUA 0
GUG 0
TGG 81,613
UGG 0
TAT 3,653
TAC 13,437
UAU 0
UAC 0
TAA 0
TAG 0
TGA 1
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,300,991
(17.55%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
30,118,424
Codon Codon count
GCT 640,932
GCC 657,448
GCA 604,225
GCG 128,527
GCU 0
TGT 622,731
TGC 10,104
UGU 0
UGC 0
GAT 320,819
GAC 217,089
GAU 0
GAA 724,526
GAG 231,090
TTT 314,526
TTC 303,785
UUU 0
UUC 0
GGT 334,752
GGC 13,157
GGA 80,818
GGG 124,236
GGU 0
CAT 162,390
CAC 312,306
CAU 0
ATT 49,054
ATC 104,303
ATA 64,471
AUU 0
AUC 0
AUA 0
AAA 331,392
AAG 66,214
CTT 109,021
CTC 296,987
CTA 77,770
CTG 90,141
TTA 37,257
TTG 27,737
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 5,675
AUG 0
AAT 12,364
AAC 63,415
AAU 0
CCT 96,906
CCC 135,490
CCA 114,073
CCG 27,736
CCU 0
CAA 46,641
CAG 133,317
CGT 33,799
CGC 1,894
CGA 4,732
CGG 11,182
AGA 63,676
AGG 21,710
CGU 0
TCT 46,613
TCC 35,529
TCA 37,167
TCG 7,899
AGT 45,028
AGC 1,559
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 33,578
ACC 23,914
ACA 33,401
ACG 6,028
ACU 0
GTT 16,396
GTC 15,393
GTA 15,867
GTG 28,186
GUU 0
GUC 0
GUA 0
GUG 0
TGG 82,727
UGG 0
TAT 3,066
TAC 13,363
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,290,028
(17.56%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,499,891
Codon Codon count
GCT 612,920
GCC 596,201
GCA 589,453
GCG 118,224
GCU 0
TGT 638,312
TGC 8,807
UGU 0
UGC 0
GAT 314,576
GAC 207,242
GAU 0
GAA 717,687
GAG 219,906
TTT 341,616
TTC 313,257
UUU 0
UUC 0
GGT 315,744
GGC 11,676
GGA 77,759
GGG 112,768
GGU 0
CAT 162,277
CAC 307,762
CAU 0
ATT 54,204
ATC 107,617
ATA 69,878
AUU 0
AUC 0
AUA 0
AAA 343,488
AAG 64,242
CTT 109,647
CTC 279,650
CTA 79,759
CTG 81,080
TTA 38,748
TTG 26,433
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 6,212
AUG 0
AAT 13,052
AAC 63,942
AAU 0
CCT 92,656
CCC 121,986
CCA 107,595
CCG 25,426
CCU 0
CAA 46,465
CAG 129,545
CGT 33,296
CGC 1,552
CGA 4,443
CGG 10,984
AGA 63,842
AGG 20,696
CGU 0
TCT 47,390
TCC 35,584
TCA 37,225
TCG 7,521
AGT 47,053
AGC 1,383
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 34,184
ACC 23,214
ACA 35,493
ACG 6,199
ACU 0
GTT 15,710
GTC 16,059
GTA 16,786
GTG 25,481
GUU 0
GUC 0
GUA 0
GUG 0
TGG 78,970
UGG 0
TAT 3,558
TAC 13,752
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,175,330
(17.54%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
28,942,484
Codon Codon count
GCT 573,832
GCC 518,432
GCA 566,736
GCG 93,569
GCU 0
TGT 668,891
TGC 8,133
UGU 0
UGC 0
GAT 326,381
GAC 189,872
GAU 0
GAA 711,876
GAG 196,601
TTT 376,672
TTC 324,658
UUU 0
UUC 0
GGT 294,156
GGC 8,429
GGA 73,366
GGG 98,648
GGU 0
CAT 175,613
CAC 292,663
CAU 0
ATT 63,756
ATC 116,812
ATA 84,726
AUU 0
AUC 0
AUA 0
AAA 379,314
AAG 66,327
CTT 112,515
CTC 263,671
CTA 83,942
CTG 72,696
TTA 43,643
TTG 27,070
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 7,076
AUG 0
AAT 15,759
AAC 67,644
AAU 0
CCT 84,863
CCC 107,428
CCA 101,412
CCG 20,438
CCU 0
CAA 49,746
CAG 122,112
CGT 28,057
CGC 1,025
CGA 3,863
CGG 8,463
AGA 69,615
AGG 17,334
CGU 0
TCT 47,310
TCC 32,728
TCA 37,482
TCG 6,524
AGT 46,951
AGC 1,238
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 36,291
ACC 22,504
ACA 37,860
ACG 5,406
ACU 0
GTT 15,815
GTC 14,682
GTA 16,854
GTG 23,068
GUU 0
GUC 0
GUA 0
GUG 0
TGG 75,331
UGG 0
TAT 4,651
TAC 15,481
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,068,451
(17.51%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
28,940,042
Codon Codon count
GCT 580,591
GCC 550,447
GCA 569,252
GCG 99,381
GCU 0
TGT 642,786
TGC 8,734
UGU 0
UGC 0
GAT 325,081
GAC 189,009
GAU 0
GAA 704,786
GAG 206,437
TTT 361,298
TTC 311,794
UUU 0
UUC 0
GGT 304,231
GGC 9,903
GGA 72,879
GGG 101,198
GGU 0
CAT 168,937
CAC 297,148
CAU 0
ATT 58,930
ATC 114,058
ATA 77,625
AUU 0
AUC 0
AUA 0
AAA 371,323
AAG 67,349
CTT 112,169
CTC 278,379
CTA 83,389
CTG 75,907
TTA 39,782
TTG 26,728
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 6,698
AUG 0
AAT 14,670
AAC 65,627
AAU 0
CCT 86,148
CCC 113,497
CCA 103,836
CCG 20,100
CCU 0
CAA 48,620
CAG 125,318
CGT 26,409
CGC 1,315
CGA 3,977
CGG 8,347
AGA 65,852
AGG 18,648
CGU 0
TCT 45,482
TCC 32,154
TCA 37,518
TCG 6,536
AGT 44,793
AGC 1,222
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 36,138
ACC 23,308
ACA 35,660
ACG 5,102
ACU 0
GTT 15,866
GTC 14,151
GTA 16,652
GTG 24,152
GUU 0
GUC 0
GUA 0
GUG 0
TGG 77,810
UGG 0
TAT 4,125
TAC 15,341
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,076,233
(17.54%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,459,764
Codon Codon count
GCT 631,113
GCC 668,677
GCA 591,367
GCG 139,447
GCU 0
TGT 594,713
TGC 10,603
UGU 0
UGC 0
GAT 309,244
GAC 210,354
GAU 0
GAA 693,221
GAG 236,141
TTT 300,577
TTC 292,166
UUU 0
UUC 0
GGT 329,442
GGC 14,868
GGA 81,616
GGG 128,418
GGU 0
CAT 149,656
CAC 306,332
CAU 0
ATT 45,148
ATC 98,647
ATA 59,065
AUU 0
AUC 0
AUA 0
AAA 315,176
AAG 63,359
CTT 105,257
CTC 302,364
CTA 77,093
CTG 86,917
TTA 34,858
TTG 26,478
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 5,239
AUG 0
AAT 11,164
AAC 61,152
AAU 0
CCT 96,915
CCC 138,792
CCA 110,857
CCG 28,634
CCU 0
CAA 43,171
CAG 130,171
CGT 34,132
CGC 2,042
CGA 5,221
CGG 12,068
AGA 60,476
AGG 21,384
CGU 0
TCT 44,259
TCC 34,840
TCA 36,431
TCG 8,351
AGT 43,003
AGC 1,677
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 33,451
ACC 24,047
ACA 31,627
ACG 5,976
ACU 0
GTT 15,066
GTC 15,103
GTA 15,918
GTG 27,556
GUU 0
GUC 0
GUA 0
GUG 0
TGG 80,319
UGG 0
TAT 3,009
TAC 12,685
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,168,605
(17.54%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
28,161,830
Codon Codon count
GCT 547,448
GCC 465,197
GCA 540,440
GCG 72,687
GCU 0
TGT 668,782
TGC 6,177
UGU 0
UGC 0
GAT 335,143
GAC 170,552
GAU 0
GAA 686,123
GAG 179,892
TTT 399,964
TTC 325,653
UUU 0
UUC 0
GGT 282,406
GGC 7,188
GGA 68,992
GGG 84,841
GGU 0
CAT 178,056
CAC 277,669
CAU 0
ATT 70,570
ATC 122,462
ATA 93,133
AUU 0
AUC 0
AUA 0
AAA 400,222
AAG 67,415
CTT 116,241
CTC 253,712
CTA 88,720
CTG 65,632
TTA 45,204
TTG 27,283
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 7,567
AUG 0
AAT 17,405
AAC 68,198
AAU 0
CCT 78,232
CCC 96,596
CCA 97,813
CCG 15,611
CCU 0
CAA 52,328
CAG 116,399
CGT 23,228
CGC 725
CGA 3,342
CGG 6,198
AGA 71,248
AGG 15,979
CGU 0
TCT 44,628
TCC 31,512
TCA 37,334
TCG 5,600
AGT 45,837
AGC 969
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 37,025
ACC 22,302
ACA 37,111
ACG 4,461
ACU 0
GTT 15,854
GTC 14,111
GTA 16,885
GTG 20,686
GUU 0
GUC 0
GUA 0
GUG 0
TGG 71,605
UGG 0
TAT 4,938
TAC 16,247
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 4,924,496
(17.49%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
28,916,524
Codon Codon count
GCT 556,481
GCC 505,432
GCA 547,841
GCG 76,701
GCU 0
TGT 665,663
TGC 6,640
UGU 0
UGC 0
GAT 346,486
GAC 182,057
GAU 0
GAA 705,242
GAG 191,037
TTT 396,463
TTC 324,936
UUU 0
UUC 0
GGT 298,982
GGC 6,811
GGA 70,135
GGG 97,923
GGU 0
CAT 181,302
CAC 291,249
CAU 0
ATT 68,697
ATC 121,776
ATA 92,008
AUU 0
AUC 0
AUA 0
AAA 393,526
AAG 69,964
CTT 115,787
CTC 263,239
CTA 91,116
CTG 73,293
TTA 43,008
TTG 28,570
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 7,527
AUG 0
AAT 16,626
AAC 70,398
AAU 0
CCT 80,416
CCC 108,243
CCA 103,886
CCG 16,544
CCU 0
CAA 52,212
CAG 118,372
CGT 23,753
CGC 947
CGA 3,668
CGG 7,098
AGA 70,401
AGG 17,505
CGU 0
TCT 45,946
TCC 32,910
TCA 36,297
TCG 5,882
AGT 45,852
AGC 739
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 37,536
ACC 23,246
ACA 36,867
ACG 4,691
ACU 0
GTT 15,447
GTC 13,735
GTA 18,074
GTG 22,010
GUU 0
GUC 0
GUA 0
GUG 0
TGG 76,809
UGG 0
TAT 4,872
TAC 16,456
UAU 0
UAC 0
TAA 0
TAG 0
TGA 1
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,074,531
(17.55%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
28,747,901
Codon Codon count
GCT 571,179
GCC 512,065
GCA 555,163
GCG 77,114
GCU 0
TGT 660,912
TGC 6,976
UGU 0
UGC 0
GAT 331,100
GAC 184,512
GAU 0
GAA 705,834
GAG 195,280
TTT 381,636
TTC 322,240
UUU 0
UUC 0
GGT 294,931
GGC 7,082
GGA 71,150
GGG 95,549
GGU 0
CAT 175,383
CAC 288,054
CAU 0
ATT 65,442
ATC 119,584
ATA 85,462
AUU 0
AUC 0
AUA 0
AAA 382,153
AAG 67,532
CTT 116,304
CTC 264,641
CTA 88,171
CTG 74,036
TTA 42,681
TTG 28,099
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 7,148
AUG 0
AAT 15,811
AAC 68,750
AAU 0
CCT 85,753
CCC 104,825
CCA 103,103
CCG 17,352
CCU 0
CAA 50,706
CAG 121,288
CGT 23,700
CGC 859
CGA 3,452
CGG 6,797
AGA 69,942
AGG 17,864
CGU 0
TCT 46,754
TCC 32,492
TCA 37,871
TCG 5,658
AGT 47,057
AGC 1,145
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 36,627
ACC 22,285
ACA 36,855
ACG 4,747
ACU 0
GTT 16,044
GTC 14,118
GTA 17,301
GTG 22,202
GUU 0
GUC 0
GUA 0
GUG 0
TGG 75,387
UGG 0
TAT 4,478
TAC 15,881
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,034,350
(17.51%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
28,710,450
Codon Codon count
GCT 594,093
GCC 585,363
GCA 569,574
GCG 100,202
GCU 0
TGT 607,854
TGC 8,749
UGU 0
UGC 0
GAT 318,439
GAC 199,929
GAU 0
GAA 695,228
GAG 218,621
TTT 323,324
TTC 306,932
UUU 0
UUC 0
GGT 307,628
GGC 9,694
GGA 77,905
GGG 114,427
GGU 0
CAT 162,434
CAC 294,287
CAU 0
ATT 52,023
ATC 106,217
ATA 69,389
AUU 0
AUC 0
AUA 0
AAA 334,783
AAG 63,802
CTT 107,873
CTC 280,480
CTA 83,122
CTG 81,508
TTA 36,208
TTG 26,426
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 5,633
AUG 0
AAT 12,919
AAC 64,576
AAU 0
CCT 91,340
CCC 122,705
CCA 107,715
CCG 21,673
CCU 0
CAA 44,564
CAG 126,371
CGT 27,322
CGC 1,284
CGA 4,052
CGG 9,079
AGA 64,945
AGG 21,242
CGU 0
TCT 44,830
TCC 33,063
TCA 36,661
TCG 6,608
AGT 45,912
AGC 1,335
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 33,447
ACC 22,538
ACA 33,254
ACG 5,112
ACU 0
GTT 15,210
GTC 14,139
GTA 15,949
GTG 24,522
GUU 0
GUC 0
GUA 0
GUG 0
TGG 78,777
UGG 0
TAT 3,511
TAC 13,710
UAU 0
UAC 0
TAA 0
TAG 0
TGA 1
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,038,911
(17.55%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,926,954
Codon Codon count
GCT 616,805
GCC 601,243
GCA 592,105
GCG 114,481
GCU 0
TGT 653,368
TGC 8,564
UGU 0
UGC 0
GAT 327,339
GAC 203,733
GAU 0
GAA 724,596
GAG 218,422
TTT 345,693
TTC 317,954
UUU 0
UUC 0
GGT 320,292
GGC 11,022
GGA 78,078
GGG 112,381
GGU 0
CAT 168,176
CAC 311,824
CAU 0
ATT 56,259
ATC 111,753
ATA 72,827
AUU 0
AUC 0
AUA 0
AAA 358,194
AAG 66,359
CTT 113,043
CTC 290,718
CTA 81,719
CTG 82,515
TTA 40,371
TTG 27,428
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 6,199
AUG 0
AAT 14,204
AAC 65,810
AAU 0
CCT 91,039
CCC 123,501
CCA 108,238
CCG 24,493
CCU 0
CAA 47,964
CAG 130,622
CGT 31,739
CGC 1,546
CGA 4,647
CGG 10,218
AGA 67,403
AGG 20,654
CGU 0
TCT 47,794
TCC 34,256
TCA 38,626
TCG 7,110
AGT 46,804
AGC 1,587
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 36,376
ACC 24,457
ACA 35,566
ACG 5,702
ACU 0
GTT 17,001
GTC 15,206
GTA 16,822
GTG 25,439
GUU 0
GUC 0
GUA 0
GUG 0
TGG 80,004
UGG 0
TAT 3,924
TAC 14,282
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,247,469
(17.53%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,610,726
Codon Codon count
GCT 603,627
GCC 574,168
GCA 589,853
GCG 96,243
GCU 0
TGT 655,797
TGC 8,134
UGU 0
UGC 0
GAT 330,028
GAC 200,087
GAU 0
GAA 723,097
GAG 211,011
TTT 355,914
TTC 321,831
UUU 0
UUC 0
GGT 311,519
GGC 9,660
GGA 76,272
GGG 107,424
GGU 0
CAT 172,139
CAC 303,550
CAU 0
ATT 58,641
ATC 112,114
ATA 76,948
AUU 0
AUC 0
AUA 0
AAA 359,840
AAG 68,139
CTT 114,356
CTC 279,145
CTA 85,983
CTG 80,306
TTA 40,848
TTG 27,659
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 6,242
AUG 0
AAT 14,430
AAC 66,807
AAU 0
CCT 90,839
CCC 115,730
CCA 108,545
CCG 21,521
CCU 0
CAA 49,343
CAG 128,577
CGT 28,670
CGC 1,296
CGA 4,198
CGG 8,529
AGA 67,483
AGG 20,385
CGU 0
TCT 48,375
TCC 34,910
TCA 37,854
TCG 6,563
AGT 48,309
AGC 1,229
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 35,429
ACC 23,164
ACA 36,721
ACG 5,396
ACU 0
GTT 15,709
GTC 14,599
GTA 17,093
GTG 23,756
GUU 0
GUC 0
GUA 0
GUG 0
TGG 80,090
UGG 0
TAT 4,017
TAC 14,955
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,205,435
(17.58%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,293,222
Codon Codon count
GCT 596,431
GCC 562,853
GCA 576,063
GCG 101,324
GCU 0
TGT 648,050
TGC 7,723
UGU 0
UGC 0
GAT 326,483
GAC 198,805
GAU 0
GAA 713,641
GAG 206,822
TTT 361,910
TTC 317,574
UUU 0
UUC 0
GGT 309,974
GGC 9,752
GGA 75,223
GGG 108,341
GGU 0
CAT 169,097
CAC 296,249
CAU 0
ATT 59,459
ATC 111,560
ATA 77,619
AUU 0
AUC 0
AUA 0
AAA 363,014
AAG 66,941
CTT 113,352
CTC 277,645
CTA 83,750
CTG 78,618
TTA 40,585
TTG 28,359
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 6,196
AUG 0
AAT 14,517
AAC 65,554
AAU 0
CCT 87,660
CCC 116,564
CCA 106,266
CCG 22,081
CCU 0
CAA 48,553
CAG 126,584
CGT 29,245
CGC 1,425
CGA 3,990
CGG 9,415
AGA 67,649
AGG 19,342
CGU 0
TCT 46,933
TCC 33,497
TCA 38,087
TCG 6,574
AGT 46,087
AGC 1,296
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 34,823
ACC 23,719
ACA 35,770
ACG 5,647
ACU 0
GTT 15,649
GTC 14,585
GTA 16,227
GTG 23,728
GUU 0
GUC 0
GUA 0
GUG 0
TGG 78,572
UGG 0
TAT 4,110
TAC 14,977
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,135,605
(17.53%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
28,837,196
Codon Codon count
GCT 583,549
GCC 550,590
GCA 563,973
GCG 95,805
GCU 0
TGT 646,618
TGC 7,470
UGU 0
UGC 0
GAT 322,246
GAC 191,269
GAU 0
GAA 703,593
GAG 203,164
TTT 354,071
TTC 311,330
UUU 0
UUC 0
GGT 305,895
GGC 9,689
GGA 74,379
GGG 104,056
GGU 0
CAT 167,577
CAC 296,932
CAU 0
ATT 58,503
ATC 111,540
ATA 77,022
AUU 0
AUC 0
AUA 0
AAA 360,791
AAG 67,592
CTT 112,292
CTC 271,794
CTA 84,224
CTG 76,402
TTA 40,604
TTG 27,284
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 6,348
AUG 0
AAT 14,181
AAC 64,711
AAU 0
CCT 87,627
CCC 112,802
CCA 105,017
CCG 19,826
CCU 0
CAA 47,644
CAG 124,409
CGT 27,870
CGC 1,382
CGA 4,011
CGG 8,410
AGA 67,975
AGG 18,889
CGU 0
TCT 45,559
TCC 32,718
TCA 38,038
TCG 6,469
AGT 46,509
AGC 1,333
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 34,845
ACC 23,051
ACA 35,072
ACG 5,184
ACU 0
GTT 15,177
GTC 14,186
GTA 16,833
GTG 24,067
GUU 0
GUC 0
GUA 0
GUG 0
TGG 76,941
UGG 0
TAT 3,706
TAC 15,025
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,058,989
(17.54%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,872,800
Codon Codon count
GCT 633,433
GCC 633,983
GCA 590,729
GCG 113,899
GCU 0
TGT 631,294
TGC 9,202
UGU 0
UGC 0
GAT 324,808
GAC 208,829
GAU 0
GAA 716,559
GAG 226,286
TTT 326,099
TTC 309,392
UUU 0
UUC 0
GGT 325,505
GGC 11,642
GGA 79,163
GGG 118,414
GGU 0
CAT 162,796
CAC 305,056
CAU 0
ATT 51,481
ATC 107,124
ATA 68,105
AUU 0
AUC 0
AUA 0
AAA 339,392
AAG 67,693
CTT 112,537
CTC 297,197
CTA 82,393
CTG 86,124
TTA 37,987
TTG 26,625
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 5,783
AUG 0
AAT 12,596
AAC 63,363
AAU 0
CCT 97,468
CCC 125,953
CCA 112,654
CCG 23,762
CCU 0
CAA 47,325
CAG 134,147
CGT 29,741
CGC 1,255
CGA 4,182
CGG 10,293
AGA 64,955
AGG 21,548
CGU 0
TCT 46,831
TCC 34,480
TCA 38,410
TCG 7,353
AGT 46,023
AGC 1,552
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 35,784
ACC 23,932
ACA 34,440
ACG 5,454
ACU 0
GTT 15,736
GTC 15,390
GTA 16,504
GTG 26,745
GUU 0
GUC 0
GUA 0
GUG 0
TGG 82,425
UGG 0
TAT 3,467
TAC 14,151
UAU 0
UAC 0
TAA 0
TAG 0
TGA 1
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,250,450
(17.58%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
12,608,382
Codon Codon count
GCT 247,725
GCC 228,434
GCA 241,220
GCG 39,179
GCU 0
TGT 285,094
TGC 2,939
UGU 0
UGC 0
GAT 150,406
GAC 81,046
GAU 0
GAA 302,627
GAG 85,087
TTT 165,348
TTC 142,616
UUU 0
UUC 0
GGT 129,100
GGC 3,859
GGA 31,903
GGG 44,303
GGU 0
CAT 77,476
CAC 126,462
CAU 0
ATT 28,660
ATC 52,590
ATA 38,355
AUU 0
AUC 0
AUA 0
AAA 164,909
AAG 31,352
CTT 50,529
CTC 115,071
CTA 39,756
CTG 31,365
TTA 18,534
TTG 12,670
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 3,270
AUG 0
AAT 6,895
AAC 29,842
AAU 0
CCT 35,937
CCC 47,925
CCA 45,134
CCG 8,103
CCU 0
CAA 22,760
CAG 52,614
CGT 11,032
CGC 470
CGA 1,583
CGG 3,350
AGA 31,103
AGG 7,957
CGU 0
TCT 19,250
TCC 14,679
TCA 16,021
TCG 2,624
AGT 20,800
AGC 514
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 15,330
ACC 9,679
ACA 16,439
ACG 2,108
ACU 0
GTT 6,602
GTC 5,889
GTA 7,200
GTG 9,946
GUU 0
GUC 0
GUA 0
GUG 0
TGG 33,526
UGG 0
TAT 1,931
TAC 6,833
UAU 0
UAC 0
TAA 0
TAG 0
TGA 1
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 2,210,496
(17.53%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,324,659
Codon Codon count
GCT 601,099
GCC 565,646
GCA 574,548
GCG 104,133
GCU 0
TGT 634,121
TGC 8,312
UGU 0
UGC 0
GAT 329,459
GAC 198,628
GAU 0
GAA 718,322
GAG 216,729
TTT 351,370
TTC 320,254
UUU 0
UUC 0
GGT 307,349
GGC 9,581
GGA 76,652
GGG 107,540
GGU 0
CAT 168,170
CAC 299,828
CAU 0
ATT 55,661
ATC 113,128
ATA 73,785
AUU 0
AUC 0
AUA 0
AAA 360,266
AAG 67,506
CTT 114,050
CTC 288,344
CTA 84,446
CTG 78,836
TTA 39,923
TTG 27,628
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 6,290
AUG 0
AAT 13,979
AAC 64,371
AAU 0
CCT 90,792
CCC 117,947
CCA 106,051
CCG 21,522
CCU 0
CAA 48,971
CAG 126,130
CGT 28,453
CGC 1,237
CGA 4,131
CGG 9,179
AGA 66,812
AGG 19,539
CGU 0
TCT 45,402
TCC 34,056
TCA 37,539
TCG 6,983
AGT 46,674
AGC 1,375
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 34,831
ACC 23,554
ACA 34,179
ACG 5,321
ACU 0
GTT 16,290
GTC 14,329
GTA 16,412
GTG 24,270
GUU 0
GUC 0
GUA 0
GUG 0
TGG 78,726
UGG 0
TAT 3,908
TAC 14,817
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,146,507
(17.55%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
30,598,730
Codon Codon count
GCT 647,316
GCC 658,259
GCA 612,225
GCG 125,230
GCU 0
TGT 639,597
TGC 9,994
UGU 0
UGC 0
GAT 323,724
GAC 220,824
GAU 0
GAA 740,522
GAG 236,978
TTT 324,320
TTC 317,161
UUU 0
UUC 0
GGT 335,881
GGC 12,533
GGA 83,269
GGG 129,664
GGU 0
CAT 164,855
CAC 320,686
CAU 0
ATT 50,196
ATC 106,936
ATA 65,756
AUU 0
AUC 0
AUA 0
AAA 332,854
AAG 68,228
CTT 109,352
CTC 298,228
CTA 80,071
CTG 89,944
TTA 36,605
TTG 27,417
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 5,504
AUG 0
AAT 12,557
AAC 65,277
AAU 0
CCT 99,844
CCC 137,116
CCA 116,692
CCG 27,032
CCU 0
CAA 46,299
CAG 133,914
CGT 33,806
CGC 1,457
CGA 5,033
CGG 11,008
AGA 65,273
AGG 23,260
CGU 0
TCT 48,490
TCC 36,522
TCA 38,393
TCG 8,108
AGT 47,506
AGC 1,575
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 34,808
ACC 23,459
ACA 34,825
ACG 6,556
ACU 0
GTT 15,205
GTC 15,714
GTA 16,425
GTG 27,900
GUU 0
GUC 0
GUA 0
GUG 0
TGG 83,199
UGG 0
TAT 3,359
TAC 13,067
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,375,306
(17.57%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
30,304,429
Codon Codon count
GCT 645,084
GCC 651,932
GCA 612,013
GCG 119,667
GCU 0
TGT 631,328
TGC 9,132
UGU 0
UGC 0
GAT 319,688
GAC 222,711
GAU 0
GAA 730,986
GAG 232,636
TTT 327,171
TTC 310,629
UUU 0
UUC 0
GGT 330,191
GGC 12,124
GGA 84,232
GGG 129,357
GGU 0
CAT 163,373
CAC 311,321
CAU 0
ATT 51,328
ATC 102,906
ATA 67,866
AUU 0
AUC 0
AUA 0
AAA 330,942
AAG 66,165
CTT 110,069
CTC 290,851
CTA 81,595
CTG 91,367
TTA 36,619
TTG 26,804
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 5,551
AUG 0
AAT 12,576
AAC 64,390
AAU 0
CCT 100,625
CCC 133,570
CCA 116,206
CCG 28,460
CCU 0
CAA 45,158
CAG 132,576
CGT 32,615
CGC 1,541
CGA 4,352
CGG 11,105
AGA 65,538
AGG 22,382
CGU 0
TCT 49,038
TCC 36,873
TCA 36,920
TCG 7,314
AGT 47,781
AGC 1,649
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 34,188
ACC 23,889
ACA 35,019
ACG 6,402
ACU 0
GTT 14,847
GTC 15,884
GTA 16,439
GTG 27,337
GUU 0
GUC 0
GUA 0
GUG 0
TGG 82,427
UGG 0
TAT 3,336
TAC 12,934
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,317,402
(17.55%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,328,191
Codon Codon count
GCT 610,916
GCC 592,378
GCA 578,243
GCG 94,935
GCU 0
TGT 630,938
TGC 7,981
UGU 0
UGC 0
GAT 328,184
GAC 197,139
GAU 0
GAA 712,460
GAG 217,402
TTT 341,522
TTC 318,078
UUU 0
UUC 0
GGT 313,358
GGC 9,664
GGA 78,140
GGG 111,853
GGU 0
CAT 166,814
CAC 298,408
CAU 0
ATT 55,723
ATC 108,649
ATA 72,602
AUU 0
AUC 0
AUA 0
AAA 349,129
AAG 66,046
CTT 112,195
CTC 283,385
CTA 83,380
CTG 82,930
TTA 38,933
TTG 27,808
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 6,068
AUG 0
AAT 13,488
AAC 63,294
AAU 0
CCT 94,002
CCC 120,348
CCA 110,094
CCG 20,616
CCU 0
CAA 48,418
CAG 130,346
CGT 25,712
CGC 1,049
CGA 4,022
CGG 8,154
AGA 65,791
AGG 20,712
CGU 0
TCT 46,113
TCC 34,329
TCA 38,893
TCG 6,849
AGT 46,581
AGC 1,070
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 34,667
ACC 23,491
ACA 34,055
ACG 4,760
ACU 0
GTT 15,460
GTC 13,958
GTA 16,317
GTG 24,055
GUU 0
GUC 0
GUA 0
GUG 0
TGG 79,461
UGG 0
TAT 3,730
TAC 14,387
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,149,742
(17.56%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,207,503
Codon Codon count
GCT 593,059
GCC 561,442
GCA 571,359
GCG 92,202
GCU 0
TGT 644,863
TGC 7,444
UGU 0
UGC 0
GAT 330,422
GAC 196,755
GAU 0
GAA 712,561
GAG 212,132
TTT 354,095
TTC 321,010
UUU 0
UUC 0
GGT 309,389
GGC 9,016
GGA 76,351
GGG 106,674
GGU 0
CAT 168,996
CAC 293,251
CAU 0
ATT 57,707
ATC 111,172
ATA 76,170
AUU 0
AUC 0
AUA 0
AAA 360,381
AAG 66,514
CTT 113,932
CTC 284,099
CTA 85,444
CTG 80,249
TTA 41,127
TTG 26,477
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 6,593
AUG 0
AAT 14,364
AAC 65,710
AAU 0
CCT 90,991
CCC 114,124
CCA 106,564
CCG 20,293
CCU 0
CAA 48,377
CAG 127,927
CGT 27,648
CGC 1,197
CGA 3,996
CGG 8,631
AGA 68,049
AGG 19,885
CGU 0
TCT 47,183
TCC 34,349
TCA 37,064
TCG 6,393
AGT 46,250
AGC 1,100
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 35,233
ACC 23,171
ACA 35,259
ACG 4,869
ACU 0
GTT 15,950
GTC 14,290
GTA 17,138
GTG 23,375
GUU 0
GUC 0
GUA 0
GUG 0
TGG 77,829
UGG 0
TAT 3,903
TAC 14,961
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,126,626
(17.55%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
28,909,117
Codon Codon count
GCT 602,065
GCC 580,854
GCA 569,936
GCG 102,971
GCU 0
TGT 627,716
TGC 8,571
UGU 0
UGC 0
GAT 317,692
GAC 196,100
GAU 0
GAA 699,690
GAG 210,394
TTT 338,771
TTC 305,782
UUU 0
UUC 0
GGT 307,693
GGC 10,654
GGA 76,255
GGG 109,076
GGU 0
CAT 162,320
CAC 293,274
CAU 0
ATT 55,108
ATC 107,874
ATA 72,558
AUU 0
AUC 0
AUA 0
AAA 348,230
AAG 65,813
CTT 111,867
CTC 279,187
CTA 81,098
CTG 81,471
TTA 38,702
TTG 26,993
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 6,300
AUG 0
AAT 13,372
AAC 64,233
AAU 0
CCT 88,776
CCC 119,268
CCA 106,582
CCG 21,750
CCU 0
CAA 47,384
CAG 126,271
CGT 28,922
CGC 1,372
CGA 4,230
CGG 8,982
AGA 65,104
AGG 19,534
CGU 0
TCT 45,557
TCC 33,982
TCA 36,186
TCG 7,020
AGT 46,044
AGC 1,279
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 35,309
ACC 23,075
ACA 34,403
ACG 5,278
ACU 0
GTT 15,467
GTC 14,452
GTA 15,886
GTG 24,221
GUU 0
GUC 0
GUA 0
GUG 0
TGG 77,853
UGG 0
TAT 3,766
TAC 14,053
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,075,239
(17.56%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,689,184
Codon Codon count
GCT 657,587
GCC 712,053
GCA 600,032
GCG 131,937
GCU 0
TGT 572,378
TGC 10,669
UGU 0
UGC 0
GAT 304,402
GAC 223,362
GAU 0
GAA 703,169
GAG 253,193
TTT 262,513
TTC 282,895
UUU 0
UUC 0
GGT 344,077
GGC 14,376
GGA 86,358
GGG 142,141
GGU 0
CAT 146,696
CAC 315,313
CAU 0
ATT 38,631
ATC 91,660
ATA 51,797
AUU 0
AUC 0
AUA 0
AAA 285,822
AAG 63,801
CTT 103,764
CTC 309,674
CTA 74,810
CTG 96,462
TTA 31,377
TTG 26,339
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 4,559
AUG 0
AAT 9,452
AAC 56,786
AAU 0
CCT 106,319
CCC 148,361
CCA 114,496
CCG 28,953
CCU 0
CAA 40,694
CAG 137,607
CGT 32,517
CGC 2,010
CGA 4,957
CGG 12,164
AGA 58,862
AGG 24,156
CGU 0
TCT 45,196
TCC 35,828
TCA 36,187
TCG 8,325
AGT 45,235
AGC 1,948
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 32,612
ACC 23,221
ACA 30,259
ACG 5,371
ACU 0
GTT 14,083
GTC 14,370
GTA 15,616
GTG 29,148
GUU 0
GUC 0
GUA 0
GUG 0
TGG 82,954
UGG 0
TAT 2,507
TAC 11,672
UAU 0
UAC 0
TAA 0
TAG 0
TGA 1
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,228,042
(17.61%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,237,094
Codon Codon count
GCT 597,133
GCC 573,730
GCA 579,469
GCG 105,066
GCU 0
TGT 643,735
TGC 8,351
UGU 0
UGC 0
GAT 319,506
GAC 199,142
GAU 0
GAA 711,030
GAG 212,289
TTT 350,484
TTC 317,886
UUU 0
UUC 0
GGT 306,763
GGC 10,529
GGA 76,222
GGG 109,561
GGU 0
CAT 168,051
CAC 300,573
CAU 0
ATT 57,583
ATC 109,793
ATA 74,394
AUU 0
AUC 0
AUA 0
AAA 355,518
AAG 65,985
CTT 111,340
CTC 278,408
CTA 81,656
CTG 78,290
TTA 39,737
TTG 26,257
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 6,100
AUG 0
AAT 13,745
AAC 65,197
AAU 0
CCT 91,478
CCC 116,735
CCA 106,108
CCG 23,092
CCU 0
CAA 47,625
CAG 125,439
CGT 30,533
CGC 1,137
CGA 4,108
CGG 9,585
AGA 65,835
AGG 19,879
CGU 0
TCT 46,674
TCC 35,035
TCA 38,544
TCG 7,230
AGT 46,282
AGC 1,354
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 34,151
ACC 22,967
ACA 35,696
ACG 5,698
ACU 0
GTT 15,462
GTC 14,713
GTA 15,978
GTG 24,324
GUU 0
GUC 0
GUA 0
GUG 0
TGG 77,816
UGG 0
TAT 4,139
TAC 14,585
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,129,919
(17.55%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,342,806
Codon Codon count
GCT 603,092
GCC 577,866
GCA 577,137
GCG 92,578
GCU 0
TGT 642,406
TGC 7,964
UGU 0
UGC 0
GAT 327,661
GAC 198,848
GAU 0
GAA 713,655
GAG 210,641
TTT 347,936
TTC 316,097
UUU 0
UUC 0
GGT 313,640
GGC 9,249
GGA 76,523
GGG 110,313
GGU 0
CAT 169,120
CAC 301,422
CAU 0
ATT 57,181
ATC 110,183
ATA 75,054
AUU 0
AUC 0
AUA 0
AAA 357,480
AAG 68,767
CTT 113,575
CTC 282,429
CTA 85,087
CTG 81,597
TTA 39,669
TTG 27,533
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 6,297
AUG 0
AAT 13,733
AAC 65,486
AAU 0
CCT 92,480
CCC 116,839
CCA 108,562
CCG 20,064
CCU 0
CAA 47,794
CAG 128,929
CGT 26,634
CGC 1,190
CGA 4,107
CGG 8,649
AGA 68,365
AGG 21,066
CGU 0
TCT 46,086
TCC 33,357
TCA 37,942
TCG 6,134
AGT 48,088
AGC 1,247
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 36,094
ACC 23,623
ACA 34,942
ACG 4,930
ACU 0
GTT 15,226
GTC 14,250
GTA 16,924
GTG 24,901
GUU 0
GUC 0
GUA 0
GUG 0
TGG 79,293
UGG 0
TAT 3,863
TAC 14,939
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,142,595
(17.53%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
28,750,034
Codon Codon count
GCT 577,569
GCC 532,764
GCA 551,494
GCG 85,400
GCU 0
TGT 642,736
TGC 6,818
UGU 0
UGC 0
GAT 332,618
GAC 185,897
GAU 0
GAA 702,274
GAG 205,939
TTT 361,253
TTC 321,277
UUU 0
UUC 0
GGT 300,272
GGC 8,464
GGA 73,684
GGG 101,842
GGU 0
CAT 169,277
CAC 288,254
CAU 0
ATT 60,456
ATC 113,883
ATA 80,676
AUU 0
AUC 0
AUA 0
AAA 369,358
AAG 67,830
CTT 115,930
CTC 278,173
CTA 87,469
CTG 76,355
TTA 41,749
TTG 27,054
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 6,886
AUG 0
AAT 14,690
AAC 65,061
AAU 0
CCT 86,580
CCC 110,610
CCA 103,967
CCG 18,261
CCU 0
CAA 49,621
CAG 123,869
CGT 23,679
CGC 1,064
CGA 3,598
CGG 7,303
AGA 68,710
AGG 18,910
CGU 0
TCT 45,730
TCC 33,760
TCA 37,328
TCG 6,123
AGT 45,912
AGC 1,124
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 36,447
ACC 23,079
ACA 35,086
ACG 4,673
ACU 0
GTT 15,261
GTC 13,695
GTA 16,265
GTG 22,304
GUU 0
GUC 0
GUA 0
GUG 0
TGG 77,276
UGG 0
TAT 4,240
TAC 15,436
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,040,095
(17.53%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
29,046,040
Codon Codon count
GCT 580,582
GCC 531,418
GCA 557,558
GCG 84,070
GCU 0
TGT 657,563
TGC 6,923
UGU 0
UGC 0
GAT 335,873
GAC 184,965
GAU 0
GAA 711,375
GAG 201,237
TTT 377,158
TTC 324,556
UUU 0
UUC 0
GGT 299,062
GGC 7,820
GGA 71,535
GGG 98,702
GGU 0
CAT 173,938
CAC 293,027
CAU 0
ATT 63,439
ATC 117,456
ATA 84,904
AUU 0
AUC 0
AUA 0
AAA 380,786
AAG 69,335
CTT 117,993
CTC 274,640
CTA 86,419
CTG 75,552
TTA 42,925
TTG 27,857
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 7,094
AUG 0
AAT 15,627
AAC 67,286
AAU 0
CCT 85,451
CCC 108,567
CCA 104,514
CCG 18,078
CCU 0
CAA 50,467
CAG 124,393
CGT 24,548
CGC 1,114
CGA 3,563
CGG 7,835
AGA 69,950
AGG 18,040
CGU 0
TCT 46,436
TCC 33,052
TCA 37,713
TCG 5,717
AGT 47,376
AGC 980
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 35,897
ACC 23,048
ACA 36,211
ACG 4,948
ACU 0
GTT 15,982
GTC 14,088
GTA 17,247
GTG 22,133
GUU 0
GUC 0
GUA 0
GUG 0
TGG 78,116
UGG 0
TAT 4,363
TAC 15,778
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,093,200
(17.53%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
28,430,743
Codon Codon count
GCT 549,378
GCC 481,781
GCA 545,059
GCG 76,618
GCU 0
TGT 665,332
TGC 6,652
UGU 0
UGC 0
GAT 331,636
GAC 176,732
GAU 0
GAA 700,371
GAG 186,826
TTT 395,429
TTC 329,011
UUU 0
UUC 0
GGT 285,225
GGC 7,231
GGA 68,913
GGG 88,436
GGU 0
CAT 175,012
CAC 283,295
CAU 0
ATT 68,755
ATC 121,396
ATA 89,439
AUU 0
AUC 0
AUA 0
AAA 396,678
AAG 68,425
CTT 118,018
CTC 262,451
CTA 87,840
CTG 68,827
TTA 43,604
TTG 27,251
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 7,587
AUG 0
AAT 16,685
AAC 68,302
AAU 0
CCT 80,068
CCC 99,157
CCA 99,712
CCG 16,887
CCU 0
CAA 51,515
CAG 118,437
CGT 23,788
CGC 1,022
CGA 3,321
CGG 6,428
AGA 70,733
AGG 16,987
CGU 0
TCT 45,574
TCC 31,532
TCA 37,262
TCG 5,824
AGT 46,140
AGC 831
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 36,841
ACC 22,357
ACA 37,213
ACG 4,514
ACU 0
GTT 16,171
GTC 13,773
GTA 16,781
GTG 21,415
GUU 0
GUC 0
GUA 0
GUG 0
TGG 75,047
UGG 0
TAT 4,759
TAC 15,962
UAU 0
UAC 0
TAA 0
TAG 1
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 4,976,002
(17.50%)


Ancient NCBI DNA:
#ERR4059477

Nucleotide Count:
30,432,235
Codon Codon count
GCT 631,512
GCC 611,046
GCA 609,721
GCG 123,574
GCU 0
TGT 660,182
TGC 9,311
UGU 0
UGC 0
GAT 323,268
GAC 216,308
GAU 0
GAA 741,985
GAG 227,775
TTT 342,772
TTC 322,018
UUU 0
UUC 0
GGT 324,422
GGC 10,942
GGA 83,506
GGG 118,494
GGU 0
CAT 170,435
CAC 320,813
CAU 0
ATT 53,491
ATC 110,556
ATA 70,803
AUU 0
AUC 0
AUA 0
AAA 350,776
AAG 67,203
CTT 110,642
CTC 295,179
CTA 81,533
CTG 83,285
TTA 40,544
TTG 27,014
CUU 0
CUC 0
CUA 0
CUG 0
UUA 0
UUG 0
ATG 5,897
AUG 0
AAT 13,431
AAC 66,706
AAU 0
CCT 98,279
CCC 129,993
CCA 109,762
CCG 26,711
CCU 0
CAA 47,148
CAG 130,001
CGT 34,694
CGC 1,436
CGA 5,032
CGG 11,083
AGA 66,096
AGG 21,208
CGU 0
TCT 49,316
TCC 36,232
TCA 38,734
TCG 7,332
AGT 48,031
AGC 1,535
UCU 0
UCC 0
UCA 0
UCG 0
AGU 0
ACT 35,062
ACC 23,430
ACA 36,849
ACG 6,964
ACU 0
GTT 16,005
GTC 16,149
GTA 17,278
GTG 27,756
GUU 0
GUC 0
GUA 0
GUG 0
TGG 81,008
UGG 0
TAT 3,433
TAC 13,837
UAU 0
UAC 0
TAA 0
TAG 0
TGA 0
UAA 0
UAG 0
UGA 0
UGA 0
Out of frame base-pair
count: 5,335,621
(17.53%)