Pages

Wednesday, November 29, 2023

On The Origin Of Another Genetic Constant - 3

General Atom Particles
I. What, When, Why, and How

After viewing the presentation of Dr. Falkowski given to a Harvard audience depicted in the video below, I wondered again about this series, which focuses on the discovery of atomic contents in the format of a constant in DNA and RNA.

Why is it worthwhile to focus on the four and only four atom types that make up the nucleotide base pairs of DNA and RNA?

IMO it is mainly worthwhile because it shines light upon a dark region of our understanding which Dr. Falkowski points out is considered to be "an embarrassment" to educators and scientists (at least to the intellectually honest ones).

That embarrassment was specifically described to be "we know where [we are] but we don't know where we came from".

That is to say we may have ideas about where we came from, which currently is expressed by "The Big Bang" hypothesis of cosmology followed by "The Theory of Evolution" animated now in various remodels of Darwinism.

The presentation of Dr. Falkowski deals with the relevant events that predate the latter sequence composed of the evolution of the various models of Darwinism.

It is primarily an abiotic rather than a biotic evidentiary analysis.

This series focuses on the elements that are said to belong originally to the abiotic phase, that is, they existed before the biology phase which they are currently fundamental elements of.

The focus in the two Dredd Blog series which we are in the midst of is "how do only four atom types (carbon, hydrogen, nitrogen, and oxygen) end up tethered together during and after a big bang, and then billions of years after that end up in an even more complicated setting to render all of our genetic events"?

Dr. Falkowski says "we don't know".

Nevertheless, it is the substantial quantum consideration in the sense that "the proton and the neutron, make up most of the mass of ordinary matter" (Wikipedia).

In other words we are inherently focusing on the most of genetic matter because the proton and neutron particle types are the central pillars of those four atom types that make up the genetic matter in nucleotide types A, C, G, T, and U.

The Eugenicists of  yesteryear upon discovering that atoms, electrons, protons, and neutrons existed, responded to the challenging questions which that scientific discovery presented with "yeah but" those itsy bitsy thingys are "emitting etheric vibrations" to be received by "a psychic organ":

"At this point the theories of philosophical physics are brought into the hypothesis. Matter is composed of electrons and protons, forming atoms and molecules which are themselves separated by the ether and through which, though widely spaced apart, they act upon one another. Protons and electrons are only modifications of the other. Thus matter being itself etherial can act upon the ether; and the cortical nerve endings, being material, set up etheric vibrations which are sent out radially through the ether, without the necessity of any definite paths."

...

"Provided there be a psychic organ capable of picking up these vibrations and responding to them, capable also of emitting etheric vibrations to which the material brain will respond, we have an explanation of the possibility of Interaction. But what is to be the nature of the psychic organ thus postulated? Like the material brain, formed of protons and electrons, the psychic brain will also be formed of derivatives of ether, 'of etherial units of a finer order which may be called psychons. The structured protoplasmatic brain will have its counterpart in a psychoplasmic structure. Moreover, since protons and electrons which constitute protoplasmic structure are widely spaced apart there is no difficulty in the way of a conception of an interpenetrating psychoplasmic structure."

(Small Brains Considered - 16, quoting from The Eugenics Review). You may, like I did not so long ago, think that modern physicists don't end up saying "I'm pickin' up good vibrations", but check this out and be careful your jaw doesn't hit the floor:

"... Roger Penrose and I have developed a theory of consciousness ... It basically proposes quantum computation in brain neuron microtubules inside neurons. So rather than neuron-to-neuron communication, we're looking at a deeper level inside neurons to give a global sense of consciousness through quantum mechanics, which results in real-time causality and free will ... it gives consciousness real-time control and a potential connection to fundamental space-time geometry, quantum space-time geometry, through Roger's objective reduction. This is consistent with Eastern spiritual traditions. Although Roger doesn't like to talk about it, I've taken the liberty of observing the implications of what he said and what we've said for consciousness, for Eastern philosophy and other spiritual traditions ... if quantum consciousness is correct, for example, if Penrose's idea is correct, we are literally ripples in the fine structure of space-time geometry, which can resonate - levels of consciousness can resonate from the Planck scale, the bottom level of the Universe, multiple hierarchical levels to the brain. This is consistent with Eastern philosophy and also indicates that afterlife, reincarnation, and out-of-body experiences that we've heard about are plausible. The quantum soul."

(Small Brains Considered - 6). And we thought that Eugenics was a dead pseudoscience?

But I digress, so ...

II. Genetic History Points To Constants

In several posts recently Dredd Blog has pointed out 'constants' (e.g. ≈(32/35/25/6), but even a cursory review of the history of genetics also hints at 'constants' among species:

"Modern genetics focuses on ... DNA ... the genetic code are the same in virtually all organisms, including plants, animals, fungi, bacteria, and viruses."

(Britannica, Genetics, emphasis added). When considering the atomic structure of DNA in the genomic sequences, doesn't that genetic history and current reality hint at constants ("the genetic code are the same in virtually all")?

And all that with only four atom types (carbon, hydrogen, nitrogen, and oxygen)?

III. The Source Material

An analysis of the source material downloaded from the GenBank has been displayed in hundreds of appendices in several Dredd Blog series.

I am including some newer looks in today's appendix (DNA001).

I tried to make them from many different organisms so as to back-up the assertion from Britannica above (i.e. different organisms, same genetic code).

To help do so I built an SQL table composed of the scientific names of organisms the selected data using those names.

However, since those "scientific names" are generally composed of an ancient language, I added a "common names" line at the beginning of each genome sequence record (it is in common English).

Further, a lot of the records are of Homo sapiens (common name "humans" or "people") as follows: chromosomes 1,2,5,6,8,11,13,17,18,19,21,22,Y and two "unplaced genomic scaffolds": 1) GRCh38.p14 Primary Assembly HSCHRUN RANDOM 128; 2) GRCh38.p14 Primary Assembly HSCHRUN RANDOM CTG9.

IV. Closing Comments

As in previous posts detailing the hypothetical ≈(32/35/25/6) genetic constant, the rubber meets the road at the variation details, so we might as well notice that only two of the GenBank data sequences in today's appendix have a >1% and <2% variation.

One is a cockroach genome, the other is a human chromosome.

All the other instances are less than 1% variation (that is not much).

Just sayin' ...

The next post in this series is here, the previous post in this series is here



DNA001 Constants

This is an appendix to: On The Origin Of Another Genetic Constant - 3


Common name(s): cinereous cockroach/gray cockroach

Genbank File Genome link: CP005488.1

Source: Blattabacterium sp. (Nauphoeta cinerea)

ACGT Nucleotide Counts:

Adenine ('A') count: 228,913
(atom counts: C: 1,144,565, H: 1,144,565, N: 1,144,565)

Cytosine ('C') count: 79,554
(atom counts: C: 318,216, H: 397,770, N: 238,662, O: 79,554)

Guanine ('G') count: 82,935
(atom counts: C: 414,675, H: 414,675, N: 414,675, O: 82,935)

Thymine ('T') count: 231,550
(atom counts: C: 1,157,750, H: 1,389,300, N: 463,100, O: 463,100)


Valid Nucleotide count: 622,952 bp
Invalid Nucleotide count: 0
Invalid character(s): n/a

Atom content:

Total Atoms: 9,268,107
Atoms Per Nucleotide: 14.88

ACGT Atom Percents:

Adenine ('A'):
Carbon: 12.3495, Hydrogen: 12.3495, Nitrogen: 12.3495, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 3.4335, Hydrogen: 4.2918, Nitrogen: 2.5751, Oxygen: 0.8584
Guanine ('G'):
Carbon: 4.4742, Hydrogen: 4.4742, Nitrogen: 4.4742, Oxygen: 0.8948
Thymine ('T'):
Carbon: 12.4918, Hydrogen: 14.9901, Nitrogen: 4.9967, Oxygen: 4.9967

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.7489% (12.3495% + 3.4335% + 4.4742% + 12.4918%)
Hydrogen: 36.1056% (12.3495% + 4.2918% + 4.4742% + 14.9901%)
Nitrogen: 24.3955% (12.3495% + 2.5751% + 4.4742% + 4.9967%)
Oxygen: 6.7499% (0.0000% + 0.8584% + 0.8948% + 4.9967%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.5455% (> constant: 32.2034%)
Hydrogen: 0.5124% (> constant: 35.5932%)
Nitrogen: -1.0282% (< constant: 25.4237%)
Oxygen: -0.0298% (< constant: 6.7797%)


Common name(s): horseflies/horseflies and deerflies

Genbank File Genome link: CP024969.1

Source: Mesoplasma tabanidae

ACGT Nucleotide Counts:

Adenine ('A') count: 312,491
(atom counts: C: 1,562,455, H: 1,562,455, N: 1,562,455)

Cytosine ('C') count: 113,832
(atom counts: C: 455,328, H: 569,160, N: 341,496, O: 113,832)

Guanine ('G') count: 113,757
(atom counts: C: 568,785, H: 568,785, N: 568,785, O: 113,757)

Thymine ('T') count: 306,827
(atom counts: C: 1,534,135, H: 1,840,962, N: 613,654, O: 613,654)


Valid Nucleotide count: 846,907 bp
Invalid Nucleotide count: 0
Invalid character(s): n/a

Atom content:

Total Atoms: 12,589,698
Atoms Per Nucleotide: 14.87

ACGT Atom Percents:

Adenine ('A'):
Carbon: 12.4106, Hydrogen: 12.4106, Nitrogen: 12.4106, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 3.6167, Hydrogen: 4.5208, Nitrogen: 2.7125, Oxygen: 0.9042
Guanine ('G'):
Carbon: 4.5179, Hydrogen: 4.5179, Nitrogen: 4.5179, Oxygen: 0.9036
Thymine ('T'):
Carbon: 12.1856, Hydrogen: 14.6228, Nitrogen: 4.8743, Oxygen: 4.8743

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.7308% (12.4106% + 3.6167% + 4.5179% + 12.1856%)
Hydrogen: 36.0720% (12.4106% + 4.5208% + 4.5179% + 14.6228%)
Nitrogen: 24.5152% (12.4106% + 2.7125% + 4.5179% + 4.8743%)
Oxygen: 6.6820% (0.0000% + 0.9042% + 0.9036% + 4.8743%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.5274% (> constant: 32.2034%)
Hydrogen: 0.4788% (> constant: 35.5932%)
Nitrogen: -0.9085% (< constant: 25.4237%)
Oxygen: -0.0977% (< constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: NT_187424.1

Source: Homo sapiens unplaced genomic scaffold, GRCh38.p14 Primary Assembly HSCHRUN RANDOM 128

ACGT Nucleotide Counts:

Adenine ('A') count: 28,784
(atom counts: C: 143,920, H: 143,920, N: 143,920)

Cytosine ('C') count: 15,860
(atom counts: C: 63,440, H: 79,300, N: 47,580, O: 15,860)

Guanine ('G') count: 18,385
(atom counts: C: 91,925, H: 91,925, N: 91,925, O: 18,385)

Thymine ('T') count: 29,873
(atom counts: C: 149,365, H: 179,238, N: 59,746, O: 59,746)


Valid Nucleotide count: 92,983 bp
Invalid Nucleotide count: 81
Invalid character(s): N count(81)

Atom content:

Total Atoms: 1,380,195
Atoms Per Nucleotide: 14.84

ACGT Atom Percents:

Adenine ('A'):
Carbon: 10.4275, Hydrogen: 10.4275, Nitrogen: 10.4275, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 4.5965, Hydrogen: 5.7456, Nitrogen: 3.4473, Oxygen: 1.1491
Guanine ('G'):
Carbon: 6.6603, Hydrogen: 6.6603, Nitrogen: 6.6603, Oxygen: 1.3321
Thymine ('T'):
Carbon: 10.8220, Hydrogen: 12.9864, Nitrogen: 4.3288, Oxygen: 4.3288

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.5063% (10.4275% + 4.5965% + 6.6603% + 10.8220%)
Hydrogen: 35.8198% (10.4275% + 5.7456% + 6.6603% + 12.9864%)
Nitrogen: 24.8640% (10.4275% + 3.4473% + 6.6603% + 4.3288%)
Oxygen: 6.8100% (0.0000% + 1.1491% + 1.3321% + 4.3288%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.3029% (> constant: 32.2034%)
Hydrogen: 0.2266% (> constant: 35.5932%)
Nitrogen: -0.5597% (< constant: 25.4237%)
Oxygen: 0.0303% (> constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: NT_187395.1

Source: Homo sapiens chromosome Y unlocalized genomic scaffold, GRCh38.p14 Primary Assembly HSCHRY RANDOM CTG1

ACGT Nucleotide Counts:

Adenine ('A') count: 8,274
(atom counts: C: 41,370, H: 41,370, N: 41,370)

Cytosine ('C') count: 7,232
(atom counts: C: 28,928, H: 36,160, N: 21,696, O: 7,232)

Guanine ('G') count: 8,756
(atom counts: C: 43,780, H: 43,780, N: 43,780, O: 8,756)

Thymine ('T') count: 12,978
(atom counts: C: 64,890, H: 77,868, N: 25,956, O: 25,956)


Valid Nucleotide count: 37,240 bp
Invalid Nucleotide count: 0
Invalid character(s): n/a

Atom content:

Total Atoms: 552,892
Atoms Per Nucleotide: 14.85

ACGT Atom Percents:

Adenine ('A'):
Carbon: 7.4825, Hydrogen: 7.4825, Nitrogen: 7.4825, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 5.2321, Hydrogen: 6.5402, Nitrogen: 3.9241, Oxygen: 1.3080
Guanine ('G'):
Carbon: 7.9184, Hydrogen: 7.9184, Nitrogen: 7.9184, Oxygen: 1.5837
Thymine ('T'):
Carbon: 11.7365, Hydrogen: 14.0838, Nitrogen: 4.6946, Oxygen: 4.6946

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.3694% (7.4825% + 5.2321% + 7.9184% + 11.7365%)
Hydrogen: 36.0248% (7.4825% + 6.5402% + 7.9184% + 14.0838%)
Nitrogen: 24.0195% (7.4825% + 3.9241% + 7.9184% + 4.6946%)
Oxygen: 7.5863% (0.0000% + 1.3080% + 1.5837% + 4.6946%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.1660% (> constant: 32.2034%)
Hydrogen: 0.4316% (> constant: 35.5932%)
Nitrogen: -1.4042% (< constant: 25.4237%)
Oxygen: 0.8066% (> constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: KI270878.1

Source: Homo sapiens chromosome 22 genomic contig, GRCh38 reference assembly alternate locus group ALT REF LOCI 1

ACGT Nucleotide Counts:

Adenine ('A') count: 46,732
(atom counts: C: 233,660, H: 233,660, N: 233,660)

Cytosine ('C') count: 47,425
(atom counts: C: 189,700, H: 237,125, N: 142,275, O: 47,425)

Guanine ('G') count: 45,656
(atom counts: C: 228,280, H: 228,280, N: 228,280, O: 45,656)

Thymine ('T') count: 46,449
(atom counts: C: 232,245, H: 278,694, N: 92,898, O: 92,898)


Valid Nucleotide count: 186,262 bp
Invalid Nucleotide count: 0
Invalid character(s): n/a

Atom content:

Total Atoms: 2,744,736
Atoms Per Nucleotide: 14.74

ACGT Atom Percents:

Adenine ('A'):
Carbon: 8.5130, Hydrogen: 8.5130, Nitrogen: 8.5130, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 6.9114, Hydrogen: 8.6393, Nitrogen: 5.1836, Oxygen: 1.7279
Guanine ('G'):
Carbon: 8.3170, Hydrogen: 8.3170, Nitrogen: 8.3170, Oxygen: 1.6634
Thymine ('T'):
Carbon: 8.4615, Hydrogen: 10.1538, Nitrogen: 3.3846, Oxygen: 3.3846

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.2029% (8.5130% + 6.9114% + 8.3170% + 8.4615%)
Hydrogen: 35.6231% (8.5130% + 8.6393% + 8.3170% + 10.1538%)
Nitrogen: 25.3982% (8.5130% + 5.1836% + 8.3170% + 3.3846%)
Oxygen: 6.7758% (0.0000% + 1.7279% + 1.6634% + 3.3846%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: -0.0005% (< constant: 32.2034%)
Hydrogen: 0.0299% (> constant: 35.5932%)
Nitrogen: -0.0255% (< constant: 25.4237%)
Oxygen: -0.0039% (< constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: NT_187682.1

Source: Homo sapiens chromosome 22 genomic scaffold, GRCh38.p14 alternate locus group ALT REF LOCI 3 HSCHR22 3 CTG1

ACGT Nucleotide Counts:

Adenine ('A') count: 47,135
(atom counts: C: 235,675, H: 235,675, N: 235,675)

Cytosine ('C') count: 42,449
(atom counts: C: 169,796, H: 212,245, N: 127,347, O: 42,449)

Guanine ('G') count: 41,232
(atom counts: C: 206,160, H: 206,160, N: 206,160, O: 41,232)

Thymine ('T') count: 45,287
(atom counts: C: 226,435, H: 271,722, N: 90,574, O: 90,574)


Valid Nucleotide count: 176,103 bp
Invalid Nucleotide count: 0
Invalid character(s): n/a

Atom content:

Total Atoms: 2,597,879
Atoms Per Nucleotide: 14.75

ACGT Atom Percents:

Adenine ('A'):
Carbon: 9.0718, Hydrogen: 9.0718, Nitrogen: 9.0718, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 6.5359, Hydrogen: 8.1699, Nitrogen: 4.9020, Oxygen: 1.6340
Guanine ('G'):
Carbon: 7.9357, Hydrogen: 7.9357, Nitrogen: 7.9357, Oxygen: 1.5871
Thymine ('T'):
Carbon: 8.7161, Hydrogen: 10.4594, Nitrogen: 3.4865, Oxygen: 3.4865

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.2596% (9.0718% + 6.5359% + 7.9357% + 8.7161%)
Hydrogen: 35.6368% (9.0718% + 8.1699% + 7.9357% + 10.4594%)
Nitrogen: 25.3959% (9.0718% + 4.9020% + 7.9357% + 3.4865%)
Oxygen: 6.7076% (0.0000% + 1.6340% + 1.5871% + 3.4865%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.0562% (> constant: 32.2034%)
Hydrogen: 0.0436% (> constant: 35.5932%)
Nitrogen: -0.0278% (< constant: 25.4237%)
Oxygen: -0.0721% (< constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: JH159137.1

Source: Homo sapiens chromosome 11 genomic contig, GRCh38 reference assembly alternate locus group ALT REF LOCI 1

ACGT Nucleotide Counts:

Adenine ('A') count: 61,175
(atom counts: C: 305,875, H: 305,875, N: 305,875)

Cytosine ('C') count: 36,057
(atom counts: C: 144,228, H: 180,285, N: 108,171, O: 36,057)

Guanine ('G') count: 35,269
(atom counts: C: 176,345, H: 176,345, N: 176,345, O: 35,269)

Thymine ('T') count: 58,908
(atom counts: C: 294,540, H: 353,448, N: 117,816, O: 117,816)


Valid Nucleotide count: 191,409 bp
Invalid Nucleotide count: 0
Invalid character(s): n/a

Atom content:

Total Atoms: 2,834,290
Atoms Per Nucleotide: 14.81

ACGT Atom Percents:

Adenine ('A'):
Carbon: 10.7919, Hydrogen: 10.7919, Nitrogen: 10.7919, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 5.0887, Hydrogen: 6.3609, Nitrogen: 3.8165, Oxygen: 1.2722
Guanine ('G'):
Carbon: 6.2218, Hydrogen: 6.2218, Nitrogen: 6.2218, Oxygen: 1.2444
Thymine ('T'):
Carbon: 10.3920, Hydrogen: 12.4704, Nitrogen: 4.1568, Oxygen: 4.1568

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.4945% (10.7919% + 5.0887% + 6.2218% + 10.3920%)
Hydrogen: 35.8451% (10.7919% + 6.3609% + 6.2218% + 12.4704%)
Nitrogen: 24.9871% (10.7919% + 3.8165% + 6.2218% + 4.1568%)
Oxygen: 6.6733% (0.0000% + 1.2722% + 1.2444% + 4.1568%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.2911% (> constant: 32.2034%)
Hydrogen: 0.2519% (> constant: 35.5932%)
Nitrogen: -0.4366% (< constant: 25.4237%)
Oxygen: -0.1064% (< constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: NW_021160012.1

Source: Homo sapiens chromosome 13 genomic patch of type FIX, GRCh38.p14 PATCHES HG2509 PATCH

ACGT Nucleotide Counts:

Adenine ('A') count: 120,590
(atom counts: C: 602,950, H: 602,950, N: 602,950)

Cytosine ('C') count: 84,710
(atom counts: C: 338,840, H: 423,550, N: 254,130, O: 84,710)

Guanine ('G') count: 85,333
(atom counts: C: 426,665, H: 426,665, N: 426,665, O: 85,333)

Thymine ('T') count: 119,279
(atom counts: C: 596,395, H: 715,674, N: 238,558, O: 238,558)


Valid Nucleotide count: 409,912 bp
Invalid Nucleotide count: 0
Invalid character(s): n/a

Atom content:

Total Atoms: 6,064,593
Atoms Per Nucleotide: 14.79

ACGT Atom Percents:

Adenine ('A'):
Carbon: 9.9421, Hydrogen: 9.9421, Nitrogen: 9.9421, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 5.5872, Hydrogen: 6.9840, Nitrogen: 4.1904, Oxygen: 1.3968
Guanine ('G'):
Carbon: 7.0353, Hydrogen: 7.0353, Nitrogen: 7.0353, Oxygen: 1.4071
Thymine ('T'):
Carbon: 9.8340, Hydrogen: 11.8009, Nitrogen: 3.9336, Oxygen: 3.9336

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.3987% (9.9421% + 5.5872% + 7.0353% + 9.8340%)
Hydrogen: 35.7623% (9.9421% + 6.9840% + 7.0353% + 11.8009%)
Nitrogen: 25.1015% (9.9421% + 4.1904% + 7.0353% + 3.9336%)
Oxygen: 6.7375% (0.0000% + 1.3968% + 1.4071% + 3.9336%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.1953% (> constant: 32.2034%)
Hydrogen: 0.1691% (> constant: 35.5932%)
Nitrogen: -0.3222% (< constant: 25.4237%)
Oxygen: -0.0422% (< constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: KI270882.1

Source: Homo sapiens chromosome 19 genomic contig, GRCh38 reference assembly alternate locus group ALT REF LOCI 10

ACGT Nucleotide Counts:

Adenine ('A') count: 64,865
(atom counts: C: 324,325, H: 324,325, N: 324,325)

Cytosine ('C') count: 59,840
(atom counts: C: 239,360, H: 299,200, N: 179,520, O: 59,840)

Guanine ('G') count: 56,033
(atom counts: C: 280,165, H: 280,165, N: 280,165, O: 56,033)

Thymine ('T') count: 68,069
(atom counts: C: 340,345, H: 408,414, N: 136,138, O: 136,138)


Valid Nucleotide count: 248,807 bp
Invalid Nucleotide count: 0
Invalid character(s): n/a

Atom content:

Total Atoms: 3,668,458
Atoms Per Nucleotide: 14.74

ACGT Atom Percents:

Adenine ('A'):
Carbon: 8.8409, Hydrogen: 8.8409, Nitrogen: 8.8409, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 6.5248, Hydrogen: 8.1560, Nitrogen: 4.8936, Oxygen: 1.6312
Guanine ('G'):
Carbon: 7.6371, Hydrogen: 7.6371, Nitrogen: 7.6371, Oxygen: 1.5274
Thymine ('T'):
Carbon: 9.2776, Hydrogen: 11.1331, Nitrogen: 3.7110, Oxygen: 3.7110

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.2805% (8.8409% + 6.5248% + 7.6371% + 9.2776%)
Hydrogen: 35.7672% (8.8409% + 8.1560% + 7.6371% + 11.1331%)
Nitrogen: 25.0827% (8.8409% + 4.8936% + 7.6371% + 3.7110%)
Oxygen: 6.8697% (0.0000% + 1.6312% + 1.5274% + 3.7110%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.0771% (> constant: 32.2034%)
Hydrogen: 0.1740% (> constant: 35.5932%)
Nitrogen: -0.3410% (< constant: 25.4237%)
Oxygen: 0.0900% (> constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: GL000258.2

Source: Homo sapiens chromosome 17 genomic contig, GRCh38 reference assembly alternate locus group ALT REF LOCI 1

ACGT Nucleotide Counts:

Adenine ('A') count: 481,894
(atom counts: C: 2,409,470, H: 2,409,470, N: 2,409,470)

Cytosine ('C') count: 397,153
(atom counts: C: 1,588,612, H: 1,985,765, N: 1,191,459, O: 397,153)

Guanine ('G') count: 404,395
(atom counts: C: 2,021,975, H: 2,021,975, N: 2,021,975, O: 404,395)

Thymine ('T') count: 488,550
(atom counts: C: 2,442,750, H: 2,931,300, N: 977,100, O: 977,100)


Valid Nucleotide count: 1,821,992 bp
Invalid Nucleotide count: 50,000
Invalid character(s): N count(50,000)

Atom content:

Total Atoms: 26,189,969
Atoms Per Nucleotide: 14.37

ACGT Atom Percents:

Adenine ('A'):
Carbon: 9.2000, Hydrogen: 9.2000, Nitrogen: 9.2000, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 6.0657, Hydrogen: 7.5822, Nitrogen: 4.5493, Oxygen: 1.5164
Guanine ('G'):
Carbon: 7.7204, Hydrogen: 7.7204, Nitrogen: 7.7204, Oxygen: 1.5441
Thymine ('T'):
Carbon: 9.3270, Hydrogen: 11.1925, Nitrogen: 3.7308, Oxygen: 3.7308

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.3132% (9.2000% + 6.0657% + 7.7204% + 9.3270%)
Hydrogen: 35.6950% (9.2000% + 7.5822% + 7.7204% + 11.1925%)
Nitrogen: 25.2005% (9.2000% + 4.5493% + 7.7204% + 3.7308%)
Oxygen: 6.7913% (0.0000% + 1.5164% + 1.5441% + 3.7308%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.1098% (> constant: 32.2034%)
Hydrogen: 0.1018% (> constant: 35.5932%)
Nitrogen: -0.2232% (< constant: 25.4237%)
Oxygen: 0.0116% (> constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: KI270911.1

Source: Homo sapiens chromosome 18 genomic contig, GRCh38 reference assembly alternate locus group ALT REF LOCI 2

ACGT Nucleotide Counts:

Adenine ('A') count: 41,045
(atom counts: C: 205,225, H: 205,225, N: 205,225)

Cytosine ('C') count: 38,025
(atom counts: C: 152,100, H: 190,125, N: 114,075, O: 38,025)

Guanine ('G') count: 36,403
(atom counts: C: 182,015, H: 182,015, N: 182,015, O: 36,403)

Thymine ('T') count: 42,237
(atom counts: C: 211,185, H: 253,422, N: 84,474, O: 84,474)


Valid Nucleotide count: 157,710 bp
Invalid Nucleotide count: 0
Invalid character(s): n/a

Atom content:

Total Atoms: 2,326,003
Atoms Per Nucleotide: 14.75

ACGT Atom Percents:

Adenine ('A'):
Carbon: 8.8231, Hydrogen: 8.8231, Nitrogen: 8.8231, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 6.5391, Hydrogen: 8.1739, Nitrogen: 4.9043, Oxygen: 1.6348
Guanine ('G'):
Carbon: 7.8252, Hydrogen: 7.8252, Nitrogen: 7.8252, Oxygen: 1.5650
Thymine ('T'):
Carbon: 9.0793, Hydrogen: 10.8952, Nitrogen: 3.6317, Oxygen: 3.6317

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.2667% (8.8231% + 6.5391% + 7.8252% + 9.0793%)
Hydrogen: 35.7174% (8.8231% + 8.1739% + 7.8252% + 10.8952%)
Nitrogen: 25.1844% (8.8231% + 4.9043% + 7.8252% + 3.6317%)
Oxygen: 6.8315% (0.0000% + 1.6348% + 1.5650% + 3.6317%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.0633% (> constant: 32.2034%)
Hydrogen: 0.1242% (> constant: 35.5932%)
Nitrogen: -0.2393% (< constant: 25.4237%)
Oxygen: 0.0518% (> constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: GL949747.2

Source: Homo sapiens chromosome 19 genomic contig, GRCh38 reference assembly alternate locus group ALT REF LOCI 2

ACGT Nucleotide Counts:

Adenine ('A') count: 167,610
(atom counts: C: 838,050, H: 838,050, N: 838,050)

Cytosine ('C') count: 162,219
(atom counts: C: 648,876, H: 811,095, N: 486,657, O: 162,219)

Guanine ('G') count: 166,001
(atom counts: C: 830,005, H: 830,005, N: 830,005, O: 166,001)

Thymine ('T') count: 167,690
(atom counts: C: 838,450, H: 1,006,140, N: 335,380, O: 335,380)


Valid Nucleotide count: 729,520 bp
Invalid Nucleotide count: 66,000
Invalid character(s): N count(66,000)

Atom content:

Total Atoms: 9,794,363
Atoms Per Nucleotide: 13.43

ACGT Atom Percents:

Adenine ('A'):
Carbon: 8.5565, Hydrogen: 8.5565, Nitrogen: 8.5565, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 6.6250, Hydrogen: 8.2812, Nitrogen: 4.9687, Oxygen: 1.6562
Guanine ('G'):
Carbon: 8.4743, Hydrogen: 8.4743, Nitrogen: 8.4743, Oxygen: 1.6949
Thymine ('T'):
Carbon: 8.5605, Hydrogen: 10.2726, Nitrogen: 3.4242, Oxygen: 3.4242

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.2163% (8.5565% + 6.6250% + 8.4743% + 8.5605%)
Hydrogen: 35.5847% (8.5565% + 8.2812% + 8.4743% + 10.2726%)
Nitrogen: 25.4237% (8.5565% + 4.9687% + 8.4743% + 3.4242%)
Oxygen: 6.7753% (0.0000% + 1.6562% + 1.6949% + 3.4242%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.0129% (> constant: 32.2034%)
Hydrogen: -0.0085% (< constant: 35.5932%)
Nitrogen: 0.0000% (> constant: 25.4237%)
Oxygen: -0.0044% (< constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: NW_014040927.1

Source: Homo sapiens chromosome 1 genomic patch of type NOVEL, GRCh38.p14 PATCHES HSCHR1 5 CTG32 1

ACGT Nucleotide Counts:

Adenine ('A') count: 57,497
(atom counts: C: 287,485, H: 287,485, N: 287,485)

Cytosine ('C') count: 45,912
(atom counts: C: 183,648, H: 229,560, N: 137,736, O: 45,912)

Guanine ('G') count: 46,080
(atom counts: C: 230,400, H: 230,400, N: 230,400, O: 46,080)

Thymine ('T') count: 62,716
(atom counts: C: 313,580, H: 376,296, N: 125,432, O: 125,432)


Valid Nucleotide count: 212,205 bp
Invalid Nucleotide count: 0
Invalid character(s): n/a

Atom content:

Total Atoms: 3,137,331
Atoms Per Nucleotide: 14.78

ACGT Atom Percents:

Adenine ('A'):
Carbon: 9.1634, Hydrogen: 9.1634, Nitrogen: 9.1634, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 5.8536, Hydrogen: 7.3170, Nitrogen: 4.3902, Oxygen: 1.4634
Guanine ('G'):
Carbon: 7.3438, Hydrogen: 7.3438, Nitrogen: 7.3438, Oxygen: 1.4688
Thymine ('T'):
Carbon: 9.9951, Hydrogen: 11.9941, Nitrogen: 3.9980, Oxygen: 3.9980

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.3559% (9.1634% + 5.8536% + 7.3438% + 9.9951%)
Hydrogen: 35.8184% (9.1634% + 7.3170% + 7.3438% + 11.9941%)
Nitrogen: 24.8955% (9.1634% + 4.3902% + 7.3438% + 3.9980%)
Oxygen: 6.9302% (0.0000% + 1.4634% + 1.4688% + 3.9980%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.1525% (> constant: 32.2034%)
Hydrogen: 0.2252% (> constant: 35.5932%)
Nitrogen: -0.5282% (< constant: 25.4237%)
Oxygen: 0.1505% (> constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: KI270885.1

Source: Homo sapiens chromosome 19 genomic contig, GRCh38 reference assembly alternate locus group ALT REF LOCI 13

ACGT Nucleotide Counts:

Adenine ('A') count: 44,751
(atom counts: C: 223,755, H: 223,755, N: 223,755)

Cytosine ('C') count: 41,022
(atom counts: C: 164,088, H: 205,110, N: 123,066, O: 41,022)

Guanine ('G') count: 38,106
(atom counts: C: 190,530, H: 190,530, N: 190,530, O: 38,106)

Thymine ('T') count: 47,148
(atom counts: C: 235,740, H: 282,888, N: 94,296, O: 94,296)


Valid Nucleotide count: 171,027 bp
Invalid Nucleotide count: 0
Invalid character(s): n/a

Atom content:

Total Atoms: 2,521,467
Atoms Per Nucleotide: 14.74

ACGT Atom Percents:

Adenine ('A'):
Carbon: 8.8740, Hydrogen: 8.8740, Nitrogen: 8.8740, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 6.5076, Hydrogen: 8.1346, Nitrogen: 4.8807, Oxygen: 1.6269
Guanine ('G'):
Carbon: 7.5563, Hydrogen: 7.5563, Nitrogen: 7.5563, Oxygen: 1.5113
Thymine ('T'):
Carbon: 9.3493, Hydrogen: 11.2192, Nitrogen: 3.7397, Oxygen: 3.7397

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.2873% (8.8740% + 6.5076% + 7.5563% + 9.3493%)
Hydrogen: 35.7840% (8.8740% + 8.1346% + 7.5563% + 11.2192%)
Nitrogen: 25.0508% (8.8740% + 4.8807% + 7.5563% + 3.7397%)
Oxygen: 6.8779% (0.0000% + 1.6269% + 1.5113% + 3.7397%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.0839% (> constant: 32.2034%)
Hydrogen: 0.1908% (> constant: 35.5932%)
Nitrogen: -0.3729% (< constant: 25.4237%)
Oxygen: 0.0982% (> constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: NW_003315967.2

Source: Homo sapiens chromosome 21 genomic scaffold, GRCh38.p14 alternate locus group ALT REF LOCI 1 HSCHR21 1 CTG1 1

ACGT Nucleotide Counts:

Adenine ('A') count: 19,391
(atom counts: C: 96,955, H: 96,955, N: 96,955)

Cytosine ('C') count: 11,449
(atom counts: C: 45,796, H: 57,245, N: 34,347, O: 11,449)

Guanine ('G') count: 11,665
(atom counts: C: 58,325, H: 58,325, N: 58,325, O: 11,665)

Thymine ('T') count: 21,412
(atom counts: C: 107,060, H: 128,472, N: 42,824, O: 42,824)


Valid Nucleotide count: 63,917 bp
Invalid Nucleotide count: 0
Invalid character(s): n/a

Atom content:

Total Atoms: 947,522
Atoms Per Nucleotide: 14.82

ACGT Atom Percents:

Adenine ('A'):
Carbon: 10.2325, Hydrogen: 10.2325, Nitrogen: 10.2325, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 4.8332, Hydrogen: 6.0415, Nitrogen: 3.6249, Oxygen: 1.2083
Guanine ('G'):
Carbon: 6.1555, Hydrogen: 6.1555, Nitrogen: 6.1555, Oxygen: 1.2311
Thymine ('T'):
Carbon: 11.2989, Hydrogen: 13.5587, Nitrogen: 4.5196, Oxygen: 4.5196

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.5202% (10.2325% + 4.8332% + 6.1555% + 11.2989%)
Hydrogen: 35.9883% (10.2325% + 6.0415% + 6.1555% + 13.5587%)
Nitrogen: 24.5325% (10.2325% + 3.6249% + 6.1555% + 4.5196%)
Oxygen: 6.9590% (0.0000% + 1.2083% + 1.2311% + 4.5196%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.3168% (> constant: 32.2034%)
Hydrogen: 0.3951% (> constant: 35.5932%)
Nitrogen: -0.8912% (< constant: 25.4237%)
Oxygen: 0.1793% (> constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: NT_187597.1

Source: Homo sapiens chromosome 13 genomic scaffold, GRCh38.p14 alternate locus group ALT REF LOCI 1 HSCHR13 1 CTG6

ACGT Nucleotide Counts:

Adenine ('A') count: 34,786
(atom counts: C: 173,930, H: 173,930, N: 173,930)

Cytosine ('C') count: 17,823
(atom counts: C: 71,292, H: 89,115, N: 53,469, O: 17,823)

Guanine ('G') count: 17,866
(atom counts: C: 89,330, H: 89,330, N: 89,330, O: 17,866)

Thymine ('T') count: 33,357
(atom counts: C: 166,785, H: 200,142, N: 66,714, O: 66,714)


Valid Nucleotide count: 103,832 bp
Invalid Nucleotide count: 0
Invalid character(s): n/a

Atom content:

Total Atoms: 1,539,700
Atoms Per Nucleotide: 14.83

ACGT Atom Percents:

Adenine ('A'):
Carbon: 11.2964, Hydrogen: 11.2964, Nitrogen: 11.2964, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 4.6303, Hydrogen: 5.7878, Nitrogen: 3.4727, Oxygen: 1.1576
Guanine ('G'):
Carbon: 5.8018, Hydrogen: 5.8018, Nitrogen: 5.8018, Oxygen: 1.1604
Thymine ('T'):
Carbon: 10.8323, Hydrogen: 12.9988, Nitrogen: 4.3329, Oxygen: 4.3329

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.5607% (11.2964% + 4.6303% + 5.8018% + 10.8323%)
Hydrogen: 35.8847% (11.2964% + 5.7878% + 5.8018% + 12.9988%)
Nitrogen: 24.9037% (11.2964% + 3.4727% + 5.8018% + 4.3329%)
Oxygen: 6.6508% (0.0000% + 1.1576% + 1.1604% + 4.3329%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.3573% (> constant: 32.2034%)
Hydrogen: 0.2915% (> constant: 35.5932%)
Nitrogen: -0.5200% (< constant: 25.4237%)
Oxygen: -0.1289% (< constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: CM000670.2

Source: Homo sapiens chromosome 8, GRCh38 reference primary assembly

ACGT Nucleotide Counts:

Adenine ('A') count: 43,333,530
(atom counts: C: 216,667,650, H: 216,667,650, N: 216,667,650)

Cytosine ('C') count: 29,030,173
(atom counts: C: 116,120,692, H: 145,150,865, N: 87,090,519, O: 29,030,173)

Guanine ('G') count: 29,103,787
(atom counts: C: 145,518,935, H: 145,518,935, N: 145,518,935, O: 29,103,787)

Thymine ('T') count: 43,300,646
(atom counts: C: 216,503,230, H: 259,803,876, N: 86,601,292, O: 86,601,292)


Valid Nucleotide count: 145,138,636 bp
Invalid Nucleotide count: 370,500
Invalid character(s): N count(370,500)

Atom content:

Total Atoms: 2,142,565,481
Atoms Per Nucleotide: 14.76

ACGT Atom Percents:

Adenine ('A'):
Carbon: 10.1125, Hydrogen: 10.1125, Nitrogen: 10.1125, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 5.4197, Hydrogen: 6.7746, Nitrogen: 4.0648, Oxygen: 1.3549
Guanine ('G'):
Carbon: 6.7918, Hydrogen: 6.7918, Nitrogen: 6.7918, Oxygen: 1.3584
Thymine ('T'):
Carbon: 10.1049, Hydrogen: 12.1258, Nitrogen: 4.0419, Oxygen: 4.0419

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.4289% (10.1125% + 5.4197% + 6.7918% + 10.1049%)
Hydrogen: 35.8048% (10.1125% + 6.7746% + 6.7918% + 12.1258%)
Nitrogen: 25.0111% (10.1125% + 4.0648% + 6.7918% + 4.0419%)
Oxygen: 6.7552% (0.0000% + 1.3549% + 1.3584% + 4.0419%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.2255% (> constant: 32.2034%)
Hydrogen: 0.2116% (> constant: 35.5932%)
Nitrogen: -0.4126% (< constant: 25.4237%)
Oxygen: -0.0245% (< constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: NT_187632.1

Source: Homo sapiens chromosome 22 genomic scaffold, GRCh38.p14 alternate locus group ALT REF LOCI 1 HSCHR22 1 CTG6

ACGT Nucleotide Counts:

Adenine ('A') count: 46,732
(atom counts: C: 233,660, H: 233,660, N: 233,660)

Cytosine ('C') count: 47,425
(atom counts: C: 189,700, H: 237,125, N: 142,275, O: 47,425)

Guanine ('G') count: 45,656
(atom counts: C: 228,280, H: 228,280, N: 228,280, O: 45,656)

Thymine ('T') count: 46,449
(atom counts: C: 232,245, H: 278,694, N: 92,898, O: 92,898)


Valid Nucleotide count: 186,262 bp
Invalid Nucleotide count: 0
Invalid character(s): n/a

Atom content:

Total Atoms: 2,744,736
Atoms Per Nucleotide: 14.74

ACGT Atom Percents:

Adenine ('A'):
Carbon: 8.5130, Hydrogen: 8.5130, Nitrogen: 8.5130, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 6.9114, Hydrogen: 8.6393, Nitrogen: 5.1836, Oxygen: 1.7279
Guanine ('G'):
Carbon: 8.3170, Hydrogen: 8.3170, Nitrogen: 8.3170, Oxygen: 1.6634
Thymine ('T'):
Carbon: 8.4615, Hydrogen: 10.1538, Nitrogen: 3.3846, Oxygen: 3.3846

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.2029% (8.5130% + 6.9114% + 8.3170% + 8.4615%)
Hydrogen: 35.6231% (8.5130% + 8.6393% + 8.3170% + 10.1538%)
Nitrogen: 25.3982% (8.5130% + 5.1836% + 8.3170% + 3.3846%)
Oxygen: 6.7758% (0.0000% + 1.7279% + 1.6634% + 3.3846%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: -0.0005% (< constant: 32.2034%)
Hydrogen: 0.0299% (> constant: 35.5932%)
Nitrogen: -0.0255% (< constant: 25.4237%)
Oxygen: -0.0039% (< constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: NT_113889.1

Source: Homo sapiens unplaced genomic scaffold, GRCh38.p14 Primary Assembly HSCHRUN RANDOM CTG9

ACGT Nucleotide Counts:

Adenine ('A') count: 46,030
(atom counts: C: 230,150, H: 230,150, N: 230,150)

Cytosine ('C') count: 33,296
(atom counts: C: 133,184, H: 166,480, N: 99,888, O: 33,296)

Guanine ('G') count: 33,774
(atom counts: C: 168,870, H: 168,870, N: 168,870, O: 33,774)

Thymine ('T') count: 48,047
(atom counts: C: 240,235, H: 288,282, N: 96,094, O: 96,094)


Valid Nucleotide count: 161,147 bp
Invalid Nucleotide count: 0
Invalid character(s): n/a

Atom content:

Total Atoms: 2,384,387
Atoms Per Nucleotide: 14.80

ACGT Atom Percents:

Adenine ('A'):
Carbon: 9.6524, Hydrogen: 9.6524, Nitrogen: 9.6524, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 5.5857, Hydrogen: 6.9821, Nitrogen: 4.1893, Oxygen: 1.3964
Guanine ('G'):
Carbon: 7.0823, Hydrogen: 7.0823, Nitrogen: 7.0823, Oxygen: 1.4165
Thymine ('T'):
Carbon: 10.0753, Hydrogen: 12.0904, Nitrogen: 4.0301, Oxygen: 4.0301

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.3957% (9.6524% + 5.5857% + 7.0823% + 10.0753%)
Hydrogen: 35.8072% (9.6524% + 6.9821% + 7.0823% + 12.0904%)
Nitrogen: 24.9541% (9.6524% + 4.1893% + 7.0823% + 4.0301%)
Oxygen: 6.8430% (0.0000% + 1.3964% + 1.4165% + 4.0301%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.1923% (> constant: 32.2034%)
Hydrogen: 0.2140% (> constant: 35.5932%)
Nitrogen: -0.4696% (< constant: 25.4237%)
Oxygen: 0.0633% (> constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: NW_003315921.1

Source: Homo sapiens chromosome 6 genomic scaffold, GRCh38.p14 alternate locus group ALT REF LOCI 1 HSCHR6 1 CTG2

ACGT Nucleotide Counts:

Adenine ('A') count: 38,779
(atom counts: C: 193,895, H: 193,895, N: 193,895)

Cytosine ('C') count: 24,053
(atom counts: C: 96,212, H: 120,265, N: 72,159, O: 24,053)

Guanine ('G') count: 24,004
(atom counts: C: 120,020, H: 120,020, N: 120,020, O: 24,004)

Thymine ('T') count: 37,900
(atom counts: C: 189,500, H: 227,400, N: 75,800, O: 75,800)


Valid Nucleotide count: 124,736 bp
Invalid Nucleotide count: 0
Invalid character(s): n/a

Atom content:

Total Atoms: 1,846,938
Atoms Per Nucleotide: 14.81

ACGT Atom Percents:

Adenine ('A'):
Carbon: 10.4982, Hydrogen: 10.4982, Nitrogen: 10.4982, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 5.2093, Hydrogen: 6.5116, Nitrogen: 3.9070, Oxygen: 1.3023
Guanine ('G'):
Carbon: 6.4983, Hydrogen: 6.4983, Nitrogen: 6.4983, Oxygen: 1.2997
Thymine ('T'):
Carbon: 10.2602, Hydrogen: 12.3123, Nitrogen: 4.1041, Oxygen: 4.1041

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.4660% (10.4982% + 5.2093% + 6.4983% + 10.2602%)
Hydrogen: 35.8204% (10.4982% + 6.5116% + 6.4983% + 12.3123%)
Nitrogen: 25.0076% (10.4982% + 3.9070% + 6.4983% + 4.1041%)
Oxygen: 6.7061% (0.0000% + 1.3023% + 1.2997% + 4.1041%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.2626% (> constant: 32.2034%)
Hydrogen: 0.2272% (> constant: 35.5932%)
Nitrogen: -0.4161% (< constant: 25.4237%)
Oxygen: -0.0736% (< constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: KI270791.1

Source: Homo sapiens chromosome 5 genomic contig, GRCh38 reference assembly alternate locus group ALT REF LOCI 1

ACGT Nucleotide Counts:

Adenine ('A') count: 42,584
(atom counts: C: 212,920, H: 212,920, N: 212,920)

Cytosine ('C') count: 52,825
(atom counts: C: 211,300, H: 264,125, N: 158,475, O: 52,825)

Guanine ('G') count: 54,084
(atom counts: C: 270,420, H: 270,420, N: 270,420, O: 54,084)

Thymine ('T') count: 46,217
(atom counts: C: 231,085, H: 277,302, N: 92,434, O: 92,434)


Valid Nucleotide count: 195,710 bp
Invalid Nucleotide count: 0
Invalid character(s): n/a

Atom content:

Total Atoms: 2,884,084
Atoms Per Nucleotide: 14.74

ACGT Atom Percents:

Adenine ('A'):
Carbon: 7.3826, Hydrogen: 7.3826, Nitrogen: 7.3826, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 7.3264, Hydrogen: 9.1580, Nitrogen: 5.4948, Oxygen: 1.8316
Guanine ('G'):
Carbon: 9.3763, Hydrogen: 9.3763, Nitrogen: 9.3763, Oxygen: 1.8753
Thymine ('T'):
Carbon: 8.0124, Hydrogen: 9.6149, Nitrogen: 3.2050, Oxygen: 3.2050

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.0977% (7.3826% + 7.3264% + 9.3763% + 8.0124%)
Hydrogen: 35.5318% (7.3826% + 9.1580% + 9.3763% + 9.6149%)
Nitrogen: 25.4587% (7.3826% + 5.4948% + 9.3763% + 3.2050%)
Oxygen: 6.9118% (0.0000% + 1.8316% + 1.8753% + 3.2050%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: -0.1057% (< constant: 32.2034%)
Hydrogen: -0.0614% (< constant: 35.5932%)
Nitrogen: 0.0350% (> constant: 25.4237%)
Oxygen: 0.1321% (> constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: NW_003315952.3

Source: Homo sapiens chromosome 17 genomic scaffold, GRCh38.p14 alternate locus group ALT REF LOCI 1 HSCHR17 1 CTG1

ACGT Nucleotide Counts:

Adenine ('A') count: 93,913
(atom counts: C: 469,565, H: 469,565, N: 469,565)

Cytosine ('C') count: 101,643
(atom counts: C: 406,572, H: 508,215, N: 304,929, O: 101,643)

Guanine ('G') count: 93,736
(atom counts: C: 468,680, H: 468,680, N: 468,680, O: 93,736)

Thymine ('T') count: 86,399
(atom counts: C: 431,995, H: 518,394, N: 172,798, O: 172,798)


Valid Nucleotide count: 375,691 bp
Invalid Nucleotide count: 0
Invalid character(s): n/a

Atom content:

Total Atoms: 5,525,815
Atoms Per Nucleotide: 14.71

ACGT Atom Percents:

Adenine ('A'):
Carbon: 8.4977, Hydrogen: 8.4977, Nitrogen: 8.4977, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 7.3577, Hydrogen: 9.1971, Nitrogen: 5.5183, Oxygen: 1.8394
Guanine ('G'):
Carbon: 8.4816, Hydrogen: 8.4816, Nitrogen: 8.4816, Oxygen: 1.6963
Thymine ('T'):
Carbon: 7.8178, Hydrogen: 9.3813, Nitrogen: 3.1271, Oxygen: 3.1271

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.1548% (8.4977% + 7.3577% + 8.4816% + 7.8178%)
Hydrogen: 35.5577% (8.4977% + 9.1971% + 8.4816% + 9.3813%)
Nitrogen: 25.6247% (8.4977% + 5.5183% + 8.4816% + 3.1271%)
Oxygen: 6.6629% (0.0000% + 1.8394% + 1.6963% + 3.1271%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: -0.0486% (< constant: 32.2034%)
Hydrogen: -0.0355% (< constant: 35.5932%)
Nitrogen: 0.2010% (> constant: 25.4237%)
Oxygen: -0.1168% (< constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: NT_187674.1

Source: Homo sapiens chromosome 19 genomic scaffold, GRCh38.p14 alternate locus group ALT REF LOCI 26 HSCHR19KIR FH05 A HAP CTG3 1

ACGT Nucleotide Counts:

Adenine ('A') count: 54,380
(atom counts: C: 271,900, H: 271,900, N: 271,900)

Cytosine ('C') count: 43,621
(atom counts: C: 174,484, H: 218,105, N: 130,863, O: 43,621)

Guanine ('G') count: 47,882
(atom counts: C: 239,410, H: 239,410, N: 239,410, O: 47,882)

Thymine ('T') count: 52,122
(atom counts: C: 260,610, H: 312,732, N: 104,244, O: 104,244)


Valid Nucleotide count: 198,005 bp
Invalid Nucleotide count: 0
Invalid character(s): n/a

Atom content:

Total Atoms: 2,930,715
Atoms Per Nucleotide: 14.80

ACGT Atom Percents:

Adenine ('A'):
Carbon: 9.2776, Hydrogen: 9.2776, Nitrogen: 9.2776, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 5.9536, Hydrogen: 7.4420, Nitrogen: 4.4652, Oxygen: 1.4884
Guanine ('G'):
Carbon: 8.1690, Hydrogen: 8.1690, Nitrogen: 8.1690, Oxygen: 1.6338
Thymine ('T'):
Carbon: 8.8924, Hydrogen: 10.6708, Nitrogen: 3.5569, Oxygen: 3.5569

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.2926% (9.2776% + 5.9536% + 8.1690% + 8.8924%)
Hydrogen: 35.5595% (9.2776% + 7.4420% + 8.1690% + 10.6708%)
Nitrogen: 25.4688% (9.2776% + 4.4652% + 8.1690% + 3.5569%)
Oxygen: 6.6792% (0.0000% + 1.4884% + 1.6338% + 3.5569%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.0892% (> constant: 32.2034%)
Hydrogen: -0.0337% (< constant: 35.5932%)
Nitrogen: 0.0451% (> constant: 25.4237%)
Oxygen: -0.1005% (< constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: NW_015495299.1

Source: Homo sapiens chromosome 2 genomic patch of type NOVEL, GRCh38.p14 PATCHES HSCHR2 6 CTG7 2

ACGT Nucleotide Counts:

Adenine ('A') count: 155,784
(atom counts: C: 778,920, H: 778,920, N: 778,920)

Cytosine ('C') count: 112,294
(atom counts: C: 449,176, H: 561,470, N: 336,882, O: 112,294)

Guanine ('G') count: 113,302
(atom counts: C: 566,510, H: 566,510, N: 566,510, O: 113,302)

Thymine ('T') count: 153,708
(atom counts: C: 768,540, H: 922,248, N: 307,416, O: 307,416)


Valid Nucleotide count: 535,088 bp
Invalid Nucleotide count: 0
Invalid character(s): n/a

Atom content:

Total Atoms: 7,915,034
Atoms Per Nucleotide: 14.79

ACGT Atom Percents:

Adenine ('A'):
Carbon: 9.8410, Hydrogen: 9.8410, Nitrogen: 9.8410, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 5.6750, Hydrogen: 7.0937, Nitrogen: 4.2562, Oxygen: 1.4187
Guanine ('G'):
Carbon: 7.1574, Hydrogen: 7.1574, Nitrogen: 7.1574, Oxygen: 1.4315
Thymine ('T'):
Carbon: 9.7099, Hydrogen: 11.6519, Nitrogen: 3.8840, Oxygen: 3.8840

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.3833% (9.8410% + 5.6750% + 7.1574% + 9.7099%)
Hydrogen: 35.7440% (9.8410% + 7.0937% + 7.1574% + 11.6519%)
Nitrogen: 25.1386% (9.8410% + 4.2562% + 7.1574% + 3.8840%)
Oxygen: 6.7342% (0.0000% + 1.4187% + 1.4315% + 3.8840%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.1799% (> constant: 32.2034%)
Hydrogen: 0.1508% (> constant: 35.5932%)
Nitrogen: -0.2851% (< constant: 25.4237%)
Oxygen: -0.0455% (< constant: 6.7797%)


Common name(s): humans/people

Genbank File Genome link: NT_187516.1

Source: Homo sapiens chromosome 1 genomic scaffold, GRCh38.p14 alternate locus group ALT REF LOCI 1 HSCHR1 1 CTG32 1

ACGT Nucleotide Counts:

Adenine ('A') count: 113,140
(atom counts: C: 565,700, H: 565,700, N: 565,700)

Cytosine ('C') count: 94,896
(atom counts: C: 379,584, H: 474,480, N: 284,688, O: 94,896)

Guanine ('G') count: 96,329
(atom counts: C: 481,645, H: 481,645, N: 481,645, O: 96,329)

Thymine ('T') count: 121,236
(atom counts: C: 606,180, H: 727,416, N: 242,472, O: 242,472)


Valid Nucleotide count: 425,601 bp
Invalid Nucleotide count: 0
Invalid character(s): n/a

Atom content:

Total Atoms: 6,290,552
Atoms Per Nucleotide: 14.78

ACGT Atom Percents:

Adenine ('A'):
Carbon: 8.9929, Hydrogen: 8.9929, Nitrogen: 8.9929, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 6.0342, Hydrogen: 7.5427, Nitrogen: 4.5256, Oxygen: 1.5085
Guanine ('G'):
Carbon: 7.6566, Hydrogen: 7.6566, Nitrogen: 7.6566, Oxygen: 1.5313
Thymine ('T'):
Carbon: 9.6364, Hydrogen: 11.5636, Nitrogen: 3.8545, Oxygen: 3.8545

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.3200% (8.9929% + 6.0342% + 7.6566% + 9.6364%)
Hydrogen: 35.7559% (8.9929% + 7.5427% + 7.6566% + 11.5636%)
Nitrogen: 25.0297% (8.9929% + 4.5256% + 7.6566% + 3.8545%)
Oxygen: 6.8944% (0.0000% + 1.5085% + 1.5313% + 3.8545%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.1166% (> constant: 32.2034%)
Hydrogen: 0.1627% (> constant: 35.5932%)
Nitrogen: -0.3940% (< constant: 25.4237%)
Oxygen: 0.1147% (> constant: 6.7797%)


Common name(s): wild boar/pig

Genbank File Genome link: CP071553.1

Source: Sus scrofa scrofa breed NS chromosome 2

ACGT Nucleotide Counts:

Adenine ('A') count: 44,199,552
(atom counts: C: 220,997,760, H: 220,997,760, N: 220,997,760)

Cytosine ('C') count: 32,706,199
(atom counts: C: 130,824,796, H: 163,530,995, N: 98,118,597, O: 32,706,199)

Guanine ('G') count: 32,728,985
(atom counts: C: 163,644,925, H: 163,644,925, N: 163,644,925, O: 32,728,985)

Thymine ('T') count: 44,305,856
(atom counts: C: 221,529,280, H: 265,835,136, N: 88,611,712, O: 88,611,712)


Valid Nucleotide count: 154,038,104 bp
Invalid Nucleotide count: 97,512
Invalid character(s): N count(97,512)

Atom content:

Total Atoms: 2,276,425,467
Atoms Per Nucleotide: 14.78

ACGT Atom Percents:

Adenine ('A'):
Carbon: 9.7081, Hydrogen: 9.7081, Nitrogen: 9.7081, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 5.7469, Hydrogen: 7.1837, Nitrogen: 4.3102, Oxygen: 1.4367
Guanine ('G'):
Carbon: 7.1887, Hydrogen: 7.1887, Nitrogen: 7.1887, Oxygen: 1.4377
Thymine ('T'):
Carbon: 9.7315, Hydrogen: 11.6777, Nitrogen: 3.8926, Oxygen: 3.8926

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.3752% (9.7081% + 5.7469% + 7.1887% + 9.7315%)
Hydrogen: 35.7582% (9.7081% + 7.1837% + 7.1887% + 11.6777%)
Nitrogen: 25.0996% (9.7081% + 4.3102% + 7.1887% + 3.8926%)
Oxygen: 6.7671% (0.0000% + 1.4367% + 1.4377% + 3.8926%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.1718% (> constant: 32.2034%)
Hydrogen: 0.1650% (> constant: 35.5932%)
Nitrogen: -0.3241% (< constant: 25.4237%)
Oxygen: -0.0126% (< constant: 6.7797%)


Common name(s): flower flies/hover flies

Genbank File Genome link: CP025257.1

Source: Mesoplasma syrphidae

ACGT Nucleotide Counts:

Adenine ('A') count: 316,613
(atom counts: C: 1,583,065, H: 1,583,065, N: 1,583,065)

Cytosine ('C') count: 137,171
(atom counts: C: 548,684, H: 685,855, N: 411,513, O: 137,171)

Guanine ('G') count: 135,771
(atom counts: C: 678,855, H: 678,855, N: 678,855, O: 135,771)

Thymine ('T') count: 318,659
(atom counts: C: 1,593,295, H: 1,911,954, N: 637,318, O: 637,318)


Valid Nucleotide count: 908,214 bp
Invalid Nucleotide count: 0
Invalid character(s): n/a

Atom content:

Total Atoms: 13,484,639
Atoms Per Nucleotide: 14.85

ACGT Atom Percents:

Adenine ('A'):
Carbon: 11.7398, Hydrogen: 11.7398, Nitrogen: 11.7398, Oxygen: 0.0000
Cytosine ('C'):
Carbon: 4.0690, Hydrogen: 5.0862, Nitrogen: 3.0517, Oxygen: 1.0172
Guanine ('G'):
Carbon: 5.0343, Hydrogen: 5.0343, Nitrogen: 5.0343, Oxygen: 1.0069
Thymine ('T'):
Carbon: 11.8156, Hydrogen: 14.1788, Nitrogen: 4.7263, Oxygen: 4.7263

Atom percent sums (see ACGT Atom Percents above):

Carbon: 32.6586% (11.7398% + 4.0690% + 5.0343% + 11.8156%)
Hydrogen: 36.0390% (11.7398% + 5.0862% + 5.0343% + 14.1788%)
Nitrogen: 24.5520% (11.7398% + 3.0517% + 5.0343% + 4.7263%)
Oxygen: 6.7503% (0.0000% + 1.0172% + 1.0069% + 4.7263%)

Total percent: 100%

Atom variation from ~(32/35/25/6) constant (see Atom percent sums):

Carbon: 0.4552% (> constant: 32.2034%)
Hydrogen: 0.4458% (> constant: 35.5932%)
Nitrogen: -0.8717% (< constant: 25.4237%)
Oxygen: -0.0294% (< constant: 6.7797%)


Monday, November 27, 2023

Antarctica 2.0 - 16

Fig. 1 Recent Antarctica Ice Shelf History
Once upon a time detractors thought that this Dredd Blog series was mythical.

The graph at Fig. 1 shows that to the contrary it was prescient as was pointed out "before the blue line" in that graph existed.

Sometimes Dredd Blog graphs are printed a bit early eh?

But I digress, so let's review:

"The graphs in today's post illustrate what has been repeated from time to time in this series (Antarctica 2.0, 2, 3, 4, 5, 6 [& supplements A, B, C, D, E, F], 7, 8, 9, 10, 11, 12). 

To begin with, the Sahara desert receives more precipitation per square mile than Antarctica, the Earth's largest desert, does.

Many textbooks were written before those factors were known, so they set forth erroneous factors and figures.

Those errors in textbooks and published papers led to various myths about Antarctica, which are still being perpetuated by some in one sector of the media (The Warming Science Commentariat, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15)."

(Antarctica 2.0 - 13). And here we are a short time later, and the blue line has appeared below the 2022 black line and the 2021 red line (Fig. 1).

The previous post in this series is here.