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Thursday, August 17, 2023

APDX SBC TOXO

This is an appendix to: Small Brains Considered - 15



Full-Genome Table (DNA)
Link and genome info: WOEV01000427.1
Toxoplasma gondii strain TR01 Toxoplasma_gondii_Ankara_1973_207
whole genome shotgun sequence

Nucleotide ('A','C','G', 'T') Count: 15,600
'N' Unknown Count: 1

Atom Atom Count Percent
Carbon 74,096 32.1747
Hydrogen 82,106 35.6528
Nitrogen 57,874 25.1306
Oxygen 16,217 7.0419
Totals 230,293 -----


Tatabox Table
Nucleotide count: 8,058

Atom Atom Count Percent
Carbon 38,121 32.1588
Hydrogen 42,337 35.7154
Nitrogen 29,811 25.1485
Oxygen 8,271 6.9774
Totals 118,540 -----


Clean Tatabox Table
Nucleotide count: 8,058

Atom Atom Count Percent
Carbon 38,121 32.1588
Hydrogen 42,337 35.7154
Nitrogen 29,811 25.1485
Oxygen 8,271 6.9774
Totals 118,540 -----

Full-Genome Table (DNA)
Link and genome info: WOEV01000417.1
Toxoplasma gondii strain TR01 Toxoplasma_gondii_Ankara_1973_196
whole genome shotgun sequence

Nucleotide ('A','C','G', 'T') Count: 9,298
'N' Unknown Count: 21

Atom Atom Count Percent
Carbon 43,669 32.0843
Hydrogen 48,348 35.5221
Nitrogen 35,274 25.9164
Oxygen 8,816 6.4773
Totals 136,107 -----


Tatabox Table
Nucleotide count: 3,638
'N' Unknown Count: 2

Atom Atom Count Percent
Carbon 17,047 32.0939
Hydrogen 18,900 35.5825
Nitrogen 13,774 25.9319
Oxygen 3,395 6.3917
Totals 53,116 -----


Clean Tatabox Table
Nucleotide count: 3,637
'N' Unknown Count: 3
'Chimera' Nucleotide Count: 1

Atom Atom Count Percent
Carbon 17,042 32.0936
Hydrogen 18,895 35.5831
Nitrogen 13,769 25.9298
Oxygen 3,395 6.3935
Totals 53,101 -----

Full-Genome Table (DNA)
Link and genome info: WOEV01000430.1
Toxoplasma gondii strain TR01 Toxoplasma_gondii_Ankara_1973_192
whole genome shotgun sequence

Nucleotide ('A','C','G', 'T') Count: 17,813
'N' Unknown Count: 309

Atom Atom Count Percent
Carbon 83,604 32.1201
Hydrogen 92,999 35.7295
Nitrogen 66,341 25.4877
Oxygen 17,342 6.6627
Totals 260,286 -----


Tatabox Table
Nucleotide count: 447
'N' Unknown Count: 6

Atom Atom Count Percent
Carbon 2,131 32.3320
Hydrogen 2,367 35.9126
Nitrogen 1,631 24.7459
Oxygen 462 7.0096
Totals 6,591 -----


Clean Tatabox Table
Nucleotide count: 447
'N' Unknown Count: 6

Atom Atom Count Percent
Carbon 2,131 32.3320
Hydrogen 2,367 35.9126
Nitrogen 1,631 24.7459
Oxygen 462 7.0096
Totals 6,591 -----



Full-Genome Table (DNA)
Link and genome info: WOEV01000426.1
Toxoplasma gondii strain TR01 Toxoplasma_gondii_Ankara_1973_134
whole genome shotgun sequence

Nucleotide ('A','C','G', 'T') Count: 15,108
'N' Unknown Count: 142

Atom Atom Count Percent
Carbon 70,977 32.0990
Hydrogen 78,758 35.6179
Nitrogen 56,760 25.6694
Oxygen 14,624 6.6136
Totals 221,119 -----


Tatabox Table
Nucleotide count: 9,108
'N' Unknown Count: 87

Atom Atom Count Percent
Carbon 42,863 32.1112
Hydrogen 47,500 35.5851
Nitrogen 34,306 25.7007
Oxygen 8,814 6.6031
Totals 133,483 -----


Clean Tatabox Table
Nucleotide count: 9,108
'N' Unknown Count: 87

Atom Atom Count Percent
Carbon 42,863 32.1112
Hydrogen 47,500 35.5851
Nitrogen 34,306 25.7007
Oxygen 8,814 6.6031
Totals 133,483 -----

Full-Genome Table (DNA)
Link and genome info: WOEV01000418.1
Toxoplasma gondii strain TR01 Toxoplasma_gondii_Ankara_1973_24
whole genome shotgun sequence

Nucleotide ('A','C','G', 'T') Count: 9,526
'N' Unknown Count: 48

Atom Atom Count Percent
Carbon 45,112 32.1448
Hydrogen 50,045 35.6598
Nitrogen 35,349 25.1881
Oxygen 9,834 7.0073
Totals 140,340 -----


Tatabox Table
Nucleotide count: 4,567
'N' Unknown Count: 15

Atom Atom Count Percent
Carbon 21,586 32.1024
Hydrogen 23,860 35.4843
Nitrogen 17,262 25.6718
Oxygen 4,533 6.7414
Totals 67,241 -----


Clean Tatabox Table
Nucleotide count: 4,566
'N' Unknown Count: 16
'Chimera' Nucleotide Count: 1

Atom Atom Count Percent
Carbon 21,581 32.1022
Hydrogen 23,855 35.4848
Nitrogen 17,257 25.6701
Oxygen 4,533 6.7429
Totals 67,226 -----


Full-Genome Table (DNA)
Link and genome info: WOEV01000388.1
Toxoplasma gondii strain TR01 Toxoplasma_gondii_Ankara_1973_336
whole genome shotgun sequence

Nucleotide ('A','C','G', 'T') Count: 3,178
'N' Unknown Count: 28

Atom Atom Count Percent
Carbon 14,989 32.0497
Hydrogen 16,650 35.6013
Nitrogen 11,808 25.2480
Oxygen 3,321 7.1010
Totals 46,768 -----


Tatabox Table
Nucleotide count: 1,550
'N' Unknown Count: 8

Atom Atom Count Percent
Carbon 7,306 32.0523
Hydrogen 8,141 35.7155
Nitrogen 5,689 24.9583
Oxygen 1,658 7.2738
Totals 22,794 -----


Clean Tatabox Table
Nucleotide count: 1,549
'N' Unknown Count: 9
'Chimera' Nucleotide Count: 1

Atom Atom Count Percent
Carbon 7,301 32.0529
Hydrogen 8,136 35.7187
Nitrogen 5,684 24.9539
Oxygen 1,657 7.2746
Totals 22,778 -----

Full-Genome Table (DNA)
Link and genome info: WOEV01000401.1
Toxoplasma gondii strain TR01 Toxoplasma_gondii_Ankara_1973_186
whole genome shotgun sequence

Nucleotide ('A','C','G', 'T') Count: 4,173
'N' Unknown Count: 25

Atom Atom Count Percent
Carbon 19,772 32.2271
Hydrogen 21,849 35.6125
Nitrogen 15,727 25.6340
Oxygen 4,004 6.5263
Totals 61,352 -----


Tatabox Table
Nucleotide count: 299

Atom Atom Count Percent
Carbon 1,426 32.2624
Hydrogen 1,562 35.3394
Nitrogen 1,156 26.1538
Oxygen 276 6.2443
Totals 4,420 -----


Clean Tatabox Table
Nucleotide count: 297
'N' Unknown Count: 2
'Chimera' Nucleotide Count: 2

Atom Atom Count Percent
Carbon 1,417 32.2632
Hydrogen 1,552 35.3370
Nitrogen 1,148 26.1384
Oxygen 275 6.2614
Totals 4,392 -----
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