This is an appendix to: Quantum Biology - 11
01) Codon Usage Bias:
About: Respiratory syncytial virus, complete genome (15191bp)
VERSION: U39661.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 19
TATCTC (Terminator 5'3' prime) count: 4
ATATTT (Promoter 3'5' prime) count: 11
ATAGAG (Terminator 3'5' prime) count: 7
CODONS & USE COUNT (most used to least used):
AAT: 556
AAC: 368
AGA: 331
CAT: 210
GCA: 203
TGT: 182
GAT: 152
ATT: 139
GCT: 127
CAC: 112
CAA: 107
ATA: 102
CTT: 101
AGG: 94
TTA: 89
AAA: 85
CTA: 82
ATC: 75
GCC: 75
AGT: 71
GAC: 66
GGT: 61
TTT: 55
CTC: 53
GAA: 46
AAG: 44
TAT: 41
CCT: 32
CAG: 30
CGA: 29
TTC: 22
CTG: 22
ACT: 21
ATG: 21
GAG: 21
CGT: 21
GGG: 17
ACA: 16
TCT: 16
TTG: 16
TAC: 15
ACC: 15
TCA: 15
CCC: 15
TAA: 14
CCA: 14
GGA: 14
CGG: 13
GTA: 11
GTT: 11
GCG: 11
TCC: 9
TAG: 8
TGG: 8
TGA: 7
GTG: 7
GTC: 6
TCG: 1
GGC: 1
CGC: (0)
TGC: (0)
CCG: (0)
AGC: (0)
ACG: (0)
Total Codon Positions: 4106
NON-CODONS (unique count: 17)
AC,A,TT,TA,GG,AT,CT,GT,CA,TG,GA,CC,AG,AA,TC,CG,T
02) Codon Usage Bias:
About: Influenza C virus (C/Ann Arbor/1/50) PB2 gene for polymerase 2, complete cds (2365bp)
VERSION: NC_006307.2
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 3
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 1
ATAGAG (Terminator 3'5' prime) count: 0
CODONS & USE COUNT (most used to least used):
AGA: 88
AAT: 72
AGG: 39
GCA: 36
CTT: 30
AAC: 29
TGT: 28
GCT: 28
GAT: 24
ATT: 22
CAA: 18
GCC: 17
AGT: 14
AAA: 13
GAC: 13
CAT: 11
TTT: 9
CTA: 9
CAC: 9
GAA: 9
TTA: 7
ATA: 7
CGA: 7
ATG: 6
AAG: 6
TTG: 6
ATC: 6
TGG: 5
GGA: 5
GGT: 5
GTT: 4
TTC: 4
CTG: 4
CTC: 4
GAG: 4
GCG: 4
TGA: 3
TAC: 3
TAT: 3
TCA: 3
TCT: 3
CCC: 3
CCT: 3
CGG: 3
CGT: 3
TAA: 2
GTG: 2
GTA: 2
ACC: 2
ACT: 2
CAG: 2
TAG: 1
GTC: 1
ACA: 1
AGC: 1
GGG: 1
CGC: (0)
TGC: (0)
GGC: (0)
CCA: (0)
CCG: (0)
TCC: (0)
TCG: (0)
ACG: (0)
Total Codon Positions: 646
NON-CODONS (unique count: 18)
A,G,GT,CA,TA,TC,TG,TT,AA,GG,CT,AG,AT,GA,AC,CC,GC,T
03) Codon Usage Bias:
About: Influenza A virus (A/Puerto Rico/8/1934(H1N1)) segment 2, complete sequence (2341bp)
VERSION: NC_002021.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 0
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 1
ATAGAG (Terminator 3'5' prime) count: 2
CODONS & USE COUNT (most used to least used):
AAT: 62
AGA: 62
GCA: 40
AAC: 38
GAT: 28
CAT: 25
TGT: 25
AGG: 25
GCC: 25
CTT: 22
GCT: 21
CGA: 19
GAC: 18
GAA: 14
CAA: 14
ATT: 13
CAC: 12
GGT: 12
AAA: 10
TTG: 10
CTC: 10
ATA: 10
GAG: 9
ATG: 7
CTG: 7
CGG: 7
GTT: 6
ACA: 6
AGT: 6
TTT: 6
TTA: 6
CTA: 5
GGA: 5
CAG: 5
GCG: 5
TCA: 4
CCC: 4
ATC: 4
CGT: 4
TGA: 3
TAT: 3
ACC: 3
CCA: 3
CCT: 3
TTC: 3
TAA: 2
TGG: 2
ACT: 2
GGG: 2
GTG: 1
GTC: 1
TAC: 1
TCC: 1
TCT: 1
AAG: 1
CGC: (0)
TGC: (0)
GGC: (0)
CCG: (0)
TCG: (0)
AGC: (0)
ACG: (0)
GTA: (0)
TAG: (0)
Total Codon Positions: 643
NON-CODONS (unique count: 19)
A,G,C,TT,CC,AC,TA,TG,GG,GT,CA,AG,TC,GA,AT,AA,CT,CG,TC,CT
04) Codon Usage Bias:
About: Hepatitis E virus, complete genome (7176bp)
VERSION: NC_001434.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 0
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 0
ATAGAG (Terminator 3'5' prime) count: 0
CODONS & USE COUNT (most used to least used):
GCC: 250
GCT: 190
TGT: 85
GCA: 84
CAC: 72
CTT: 71
GCG: 71
CGT: 61
AGG: 56
AAT: 53
GAT: 50
AAC: 50
CAT: 49
GAC: 49
AGA: 49
CTC: 48
GGT: 48
CGA: 48
CGG: 46
CCC: 37
CTA: 33
TTT: 32
ATT: 30
CAG: 28
TTA: 27
CCT: 26
CTG: 26
GAG: 23
TTC: 21
ATC: 20
AGT: 16
GTT: 15
TCT: 15
TTG: 15
TAT: 13
ACC: 11
ATA: 11
TAC: 10
CCG: 10
CCA: 9
CAA: 9
TGG: 8
TCC: 8
ATG: 8
TGA: 7
GTC: 7
ACT: 7
GGA: 6
CGC: 6
TCG: 5
GGG: 5
GGC: 5
TGC: 5
GTG: 4
ACG: 4
ACA: 4
TCA: 4
AAG: 4
GAA: 4
GTA: 3
AAA: 3
TAA: 2
AGC: 2
TAG: 1
Total Codon Positions: 1979
NON-CODONS (unique count: 20)
C,T,GA,G,GT,AG,CA,TG,TC,CT,AC,CC,GG,TT,AT,TA,CG,GC,AA,C,A
05) Codon Usage Bias:
About: La Crosse virus segment L, complete genome (6980bp)
VERSION: NC_004108.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 11
TATCTC (Terminator 5'3' prime) count: 1
ATATTT (Promoter 3'5' prime) count: 8
ATAGAG (Terminator 3'5' prime) count: 4
CODONS & USE COUNT (most used to least used):
AAT: 207
AGA: 207
GCA: 102
AAC: 99
ATT: 79
GAT: 78
TGT: 77
AGG: 73
CAT: 72
ATA: 62
GCT: 62
GAC: 51
CAA: 44
GCC: 41
CTT: 40
GGT: 36
TTT: 33
TTA: 33
AGT: 29
ATC: 29
GAA: 29
CTA: 28
CAC: 26
AAA: 25
TAT: 21
CGA: 21
CAG: 17
ATG: 16
GAG: 16
ACT: 13
CCT: 13
TTC: 13
CTG: 13
TTG: 12
CCC: 11
CTC: 11
CGG: 11
GGG: 10
CGT: 10
GCG: 10
GTT: 9
GGA: 9
TAA: 8
ACC: 8
AAG: 8
TCT: 7
CCA: 7
ACA: 6
TCA: 6
TGA: 5
GTG: 4
GTA: 4
TAC: 4
TGG: 4
ACG: 1
AGC: 1
TCC: 1
TGC: 1
CGC: (0)
GGC: (0)
CCG: (0)
TCG: (0)
GTC: (0)
TAG: (0)
Total Codon Positions: 1873
NON-CODONS (unique count: 19)
AG,TA,C,T,AT,GT,CT,TT,GA,CC,AA,AC,GG,GC,TC,TG,CA,CG,T
06) Codon Usage Bias:
About: Influenza B virus (B/Lee/1940) segment 2, complete sequence (2313bp)
VERSION: NC_002205.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 0
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 1
ATAGAG (Terminator 3'5' prime) count: 1
CODONS & USE COUNT (most used to least used):
AAT: 83
AGA: 70
AGG: 37
AAC: 32
GCA: 32
GAT: 29
GCT: 24
GAA: 21
TGT: 21
GCC: 21
AAA: 19
CAT: 19
CTT: 18
TTT: 16
CAA: 12
CTA: 11
GAC: 11
AGT: 9
ATG: 8
TTA: 8
ATC: 8
ATT: 8
GGT: 8
CTG: 7
CAC: 7
GGG: 7
CGG: 7
CGA: 7
CCA: 6
GGA: 6
CTC: 5
GTA: 4
CCT: 4
ATA: 4
GAG: 4
CGT: 4
TAA: 3
TAT: 3
ACA: 3
ACC: 3
ACT: 3
CCC: 3
TTC: 3
TTG: 3
CAG: 3
GCG: 3
GTT: 2
TGG: 2
TCA: 2
TCC: 2
TGA: 1
TCT: 1
AAG: 1
CGC: (0)
TGC: (0)
GGC: (0)
CCG: (0)
TCG: (0)
AGC: (0)
ACG: (0)
TAC: (0)
GTC: (0)
GTG: (0)
TAG: (0)
Total Codon Positions: 638
NON-CODONS (unique count: 18)
A,TG,AA,TA,C,T,CC,AC,AT,TC,CA,CT,GT,GG,GA,TT,AG,A,AA
07) Codon Usage Bias:
About: Bovine parainfluenza virus 3 DNA, complete genome (15480bp)
VERSION: D84095.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 10
TATCTC (Terminator 5'3' prime) count: 2
ATATTT (Promoter 3'5' prime) count: 13
ATAGAG (Terminator 3'5' prime) count: 14
CODONS & USE COUNT (most used to least used):
AAT: 491
AGA: 452
AAC: 279
GAT: 211
GCA: 204
AGG: 195
CAT: 165
TGT: 156
ATT: 142
GCT: 117
CTT: 109
CAA: 107
CAC: 98
ATA: 88
ATC: 84
GAC: 84
CGA: 79
TTA: 78
GGT: 66
CTA: 62
GCC: 52
AGT: 50
CTC: 50
AAA: 43
GAA: 43
TAT: 42
CAG: 42
TTT: 37
CGG: 35
TTC: 33
AAG: 32
CTG: 27
ATG: 24
TTG: 24
GAG: 24
GTT: 23
TAC: 23
ACA: 23
ACT: 23
CGT: 23
GCG: 23
CCT: 22
GGA: 21
ACC: 19
TGG: 18
CCA: 18
GTA: 17
TCA: 17
TAA: 16
CCC: 15
TCT: 12
TGA: 11
GTG: 11
GGG: 10
GTC: 6
TCC: 3
TAG: 2
ACG: 2
CGC: (0)
TGC: (0)
GGC: (0)
CCG: (0)
TCG: (0)
AGC: (0)
Total Codon Positions: 4183
NON-CODONS (unique count: 17)
A,GA,TT,TC,AA,TG,AT,AG,CA,CC,AC,CT,GG,GT,TA,CG,TT
08) Codon Usage Bias:
About: Influenza A virus (A/Puerto Rico/8/1934(H1N1)) segment 5, complete sequence (1565bp)
VERSION: NC_002019.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 0
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 0
ATAGAG (Terminator 3'5' prime) count: 1
CODONS & USE COUNT (most used to least used):
AGA: 47
AAT: 36
GCA: 28
AGG: 24
GAT: 19
GCC: 18
AAC: 17
GCT: 17
GGT: 13
CAA: 13
CGA: 13
CTT: 11
CGG: 11
CAT: 10
TGT: 9
GAC: 9
CTA: 8
CAC: 7
TCT: 6
TTC: 6
AAA: 6
GCG: 6
CCT: 5
ATG: 5
TTG: 5
CTC: 5
ATT: 5
GGA: 5
GAG: 5
GAA: 5
CGT: 5
TGG: 4
AGT: 4
CTG: 4
ATC: 4
TAC: 3
TCC: 3
CAG: 3
GTG: 2
GTA: 2
TAT: 2
ACC: 2
CCA: 2
CCC: 2
AAG: 2
ATA: 2
GGG: 2
TAA: 1
GTC: 1
ACG: 1
ACA: 1
TCA: 1
TTT: 1
GGC: 1
CGC: (0)
TGC: (0)
TTA: (0)
CCG: (0)
TCG: (0)
AGC: (0)
ACT: (0)
GTT: (0)
TAG: (0)
TGA: (0)
Total Codon Positions: 429
NON-CODONS (unique count: 18)
A,G,T,AT,C,AC,CT,GG,TC,TT,GT,GA,CC,AA,AG,CA,TG,TT,CT
09) Codon Usage Bias:
About: Hepatitis C virus complete genome sequence (9379bp)
VERSION: AJ000009.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 1
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 0
ATAGAG (Terminator 3'5' prime) count: 1
CODONS & USE COUNT (most used to least used):
GCC: 208
GCT: 200
GCA: 153
GCG: 143
CAC: 103
AGA: 103
TGT: 102
AGG: 98
CGT: 96
CGG: 94
AAC: 93
CAT: 91
GGT: 87
CTT: 72
CTC: 71
GAC: 71
CGA: 64
GAT: 51
CTA: 43
CCC: 41
AAT: 41
GGG: 34
CCT: 27
CAG: 25
TTC: 24
CTG: 24
GAG: 23
CAA: 23
CCA: 22
ATC: 22
GGA: 22
TTG: 20
ACC: 18
TTA: 17
GAA: 17
TCC: 16
ATA: 15
ACT: 14
AGT: 14
ATG: 14
TGG: 13
ATT: 13
TAC: 12
TTT: 12
TAT: 11
GTC: 10
GTT: 10
GTG: 9
ACA: 9
TCT: 8
TCA: 7
CCG: 7
AAA: 7
TGC: 7
GGC: 6
GTA: 5
CGC: 5
AAG: 4
TAG: 3
ACG: 3
TCG: 3
TGA: 2
TAA: 2
AGC: 2
Total Codon Positions: 2586
NON-CODONS (unique count: 20)
G,A,TC,T,GT,CT,TA,CC,TG,GA,AA,GC,TT,AC,GG,CA,AT,CG,AG,T
10) Codon Usage Bias:
About: Influenza A virus (A/Puerto Rico/8/1934(H1N1)) segment 6, complete sequence (1413bp)
VERSION: NC_002018.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 1
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 0
ATAGAG (Terminator 3'5' prime) count: 1
CODONS & USE COUNT (most used to least used):
AAT: 44
GCA: 25
TGT: 24
AGA: 21
AGG: 20
GAT: 18
AAC: 17
GGT: 15
GCC: 14
GCT: 13
CAT: 12
GAC: 11
ATT: 9
CTG: 8
CAA: 8
AGT: 7
TTT: 7
TTG: 7
CTT: 7
CGG: 7
CGT: 6
TCA: 5
AAG: 5
CAC: 5
CGA: 5
GCG: 5
CCT: 4
TTC: 4
TTA: 4
CTA: 4
ATA: 4
GGA: 4
TGG: 3
TCT: 3
AAA: 3
GAG: 3
CAG: 3
TCC: 2
CCG: 2
CCA: 2
ATG: 2
CTC: 2
ATC: 2
GAA: 2
TGA: 1
GTG: 1
GTA: 1
TAC: 1
TAT: 1
ACA: 1
ACC: 1
ACT: 1
CCC: 1
GGG: 1
CGC: (0)
TGC: (0)
GGC: (0)
TCG: (0)
AGC: (0)
ACG: (0)
GTT: (0)
GTC: (0)
TAA: (0)
TAG: (0)
Total Codon Positions: 388
NON-CODONS (unique count: 18)
A,GG,C,TG,CT,TA,AT,GT,AC,AA,TT,CG,CC,TC,GA,AG,CA,TT,CT
11) Codon Usage Bias:
About: Thogoto virus segment 2, complete sequence (2212bp)
VERSION: NC_006495.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 1
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 0
ATAGAG (Terminator 3'5' prime) count: 2
CODONS & USE COUNT (most used to least used):
AGA: 79
GCA: 43
AAT: 32
GCT: 30
AAC: 28
AGG: 27
GCC: 27
CAC: 23
GAC: 21
TGT: 20
CAT: 17
GAT: 17
CGA: 15
CTC: 14
CTT: 14
CAA: 13
CTA: 12
TTA: 11
TTC: 9
GGT: 9
CCA: 8
ATC: 8
GGA: 8
CGT: 8
GGG: 7
CAG: 7
ATA: 6
AGT: 5
ATG: 5
AAA: 5
CTG: 5
ATT: 5
GAA: 5
GCG: 5
ACA: 4
ACC: 4
TCC: 4
CCC: 4
TTG: 4
GAG: 4
CGG: 4
TAT: 3
TCT: 3
CCT: 3
TTT: 3
TGA: 2
TAG: 2
GTT: 2
TGG: 2
ACT: 2
TCA: 2
GTG: 1
GTA: 1
TAC: 1
TGC: 1
CGC: (0)
GGC: (0)
AAG: (0)
CCG: (0)
TCG: (0)
AGC: (0)
ACG: (0)
GTC: (0)
TAA: (0)
Total Codon Positions: 604
NON-CODONS (unique count: 20)
A,AA,C,AC,G,T,CC,TC,TA,CA,GT,AT,GA,CT,TT,AG,TG,GG,GC,TT,T
12) Codon Usage Bias:
About: Rubella virus complete genome (9762bp)
VERSION: AF188704.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 0
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 1
ATAGAG (Terminator 3'5' prime) count: 0
CODONS & USE COUNT (most used to least used):
GCC: 460
GCG: 285
GCT: 196
GCA: 180
CGA: 126
CAC: 111
CGT: 99
CCC: 82
CGG: 74
GAC: 72
AAC: 62
CTC: 61
TGT: 58
GGT: 54
AGA: 53
AGG: 52
CTT: 49
CAT: 48
GAT: 38
CTG: 33
CTA: 31
CCT: 30
CGC: 30
CAG: 23
GGG: 22
AAT: 19
TGC: 18
ACC: 17
TTC: 17
CAA: 17
GGC: 15
TCC: 14
TCT: 14
GAA: 13
CCA: 12
ATG: 12
TTG: 12
ATC: 12
GTG: 11
TGG: 10
TTT: 10
GGA: 10
AGT: 9
CCG: 9
ATT: 9
GAG: 9
ACA: 8
AGC: 8
GTT: 7
ACG: 7
TTA: 7
TAC: 6
ACT: 6
TGA: 5
GTC: 5
TCG: 5
ATA: 5
AAG: 4
TAT: 3
TCA: 3
GTA: 1
AAA: 1
TAA: (0)
TAG: (0)
Total Codon Positions: 2679
NON-CODONS (unique count: 20)
C,G,AT,AC,A,CT,CC,GG,TC,TT,CG,CA,GT,AA,GC,AG,TG,TA,GA,GT,G
13) Codon Usage Bias:
About: West Nile virus isolate 2741, complete genome (10975bp)
VERSION: AF206518.2
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 0
TATCTC (Terminator 5'3' prime) count: 3
ATATTT (Promoter 3'5' prime) count: 1
ATAGAG (Terminator 3'5' prime) count: 2
CODONS & USE COUNT (most used to least used):
AGA: 247
GCT: 208
GCA: 189
AGG: 160
GCC: 157
AAC: 141
TGT: 133
GAT: 127
AAT: 102
CAT: 101
GAC: 95
CAC: 91
GGT: 79
GCG: 79
CGA: 72
CTT: 64
CGT: 60
GAA: 58
CGG: 56
CAA: 49
CTG: 42
CTC: 41
TTG: 39
AGT: 38
GGA: 36
ATT: 34
GAG: 33
CAG: 33
GGG: 30
CTA: 26
TGG: 25
CCT: 25
TTT: 25
AAA: 25
TTC: 21
CCC: 19
ATG: 19
TTA: 17
CCA: 16
ACA: 15
TCA: 14
ACT: 13
AAG: 13
ATC: 13
GTT: 11
TAC: 11
ACC: 11
ATA: 11
TGA: 9
GTG: 9
GTA: 7
GTC: 7
TCC: 7
TCT: 6
TAT: 5
TAG: 4
TGC: 4
ACG: 3
TAA: 2
AGC: 2
TCG: 2
CCG: 1
GGC: 1
CGC: 1
Total Codon Positions: 2994
NON-CODONS (unique count: 21)
A,G,T,C,CG,GG,AT,AA,CC,TG,TT,CT,GT,AC,GA,CA,TA,AG,TC,GC,G
14) Codon Usage Bias:
About: Dengue virus type 1 strain 16007 (PDK-13) polyprotein precursor, mRNA, complete cds (10735bp)
VERSION: AF180818.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 2
TATCTC (Terminator 5'3' prime) count: 2
ATATTT (Promoter 3'5' prime) count: 4
ATAGAG (Terminator 3'5' prime) count: 3
CODONS & USE COUNT (most used to least used):
AGA: 270
AAC: 186
AAT: 168
GCA: 166
AGG: 161
GCT: 151
GCC: 132
GAT: 112
GAC: 105
CAT: 100
CAC: 91
TGT: 91
GGT: 81
GAA: 64
CTT: 56
CGT: 56
GGA: 50
CGA: 49
ATT: 47
CTC: 45
GCG: 45
CTA: 39
AGT: 38
CAA: 38
AAA: 36
CGG: 36
ATG: 35
CTG: 33
ATC: 32
GGG: 30
TTT: 29
TTA: 28
TTG: 27
TTC: 26
CAG: 26
GAG: 25
ACA: 20
CCC: 20
ATA: 20
TCA: 16
CCA: 16
CCT: 16
GTG: 14
TAT: 14
ACT: 14
TGG: 13
TGA: 10
AAG: 10
GTT: 9
ACC: 9
GTC: 7
TCT: 7
TAC: 6
TAA: 4
GTA: 4
TCC: 4
TAG: 3
TGC: 3
ACG: 1
TCG: 1
CGC: 1
GGC: (0)
CCG: (0)
AGC: (0)
Total Codon Positions: 2946
NON-CODONS (unique count: 20)
T,G,CA,AT,AA,AG,GA,C,GT,TC,CT,TT,CC,GG,TA,TG,AC,CG,GC,C,T
15) Codon Usage Bias:
About: Influenza B virus (B/Lee/1940) segment 3, complete sequence (2204bp)
VERSION: NC_002206.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 2
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 0
ATAGAG (Terminator 3'5' prime) count: 2
CODONS & USE COUNT (most used to least used):
AAT: 71
AGA: 55
AGG: 44
GCA: 28
AAC: 27
GAT: 24
TGT: 23
GCT: 22
CTT: 18
GAA: 17
GCC: 17
ATT: 16
GAC: 15
TTA: 14
AAA: 12
GGT: 12
CTA: 11
CAT: 11
CGA: 9
AGT: 8
GAG: 8
CAA: 8
TTT: 7
AAG: 7
CAG: 7
TGG: 6
CCA: 6
TTG: 6
CTC: 6
ATC: 6
GTG: 5
ACA: 5
ATG: 5
CTG: 5
CAC: 5
GGG: 5
GGA: 5
TTC: 4
ATA: 4
GCG: 4
TGA: 3
GTA: 3
TAT: 3
ACC: 3
CGT: 3
TAC: 2
ACT: 2
TCT: 2
CCT: 2
CGG: 2
TAA: 1
GTC: 1
GTT: 1
AGC: 1
TCA: 1
TCC: 1
CCC: 1
CGC: (0)
TGC: (0)
GGC: (0)
CCG: (0)
TCG: (0)
ACG: (0)
TAG: (0)
Total Codon Positions: 600
NON-CODONS (unique count: 18)
A,TT,C,AC,G,TC,GT,AA,CA,TG,TA,CT,AG,AT,CC,GA,GG,C,TT
16) Codon Usage Bias:
About: Ebola virus - Mayinga, Zaire, 1976, complete genome (18959bp)
VERSION: AF086833.2
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 8
TATCTC (Terminator 5'3' prime) count: 7
ATATTT (Promoter 3'5' prime) count: 7
ATAGAG (Terminator 3'5' prime) count: 6
CODONS & USE COUNT (most used to least used):
AAT: 466
AGA: 361
AAC: 319
GCA: 281
GCT: 231
CAT: 227
CTT: 202
GAT: 196
AGG: 186
TGT: 183
GCC: 176
ATT: 155
CGA: 129
CAC: 125
GAC: 124
TTA: 106
CAA: 104
GGT: 102
TTT: 84
CTC: 80
CGT: 78
CAG: 76
CTA: 75
ATC: 68
GCG: 67
CGG: 66
AGT: 59
ATA: 56
GAG: 52
TTC: 51
GAA: 50
AAA: 48
TTG: 38
CTG: 38
ACT: 33
TCT: 33
CCT: 31
CCA: 30
TCA: 28
GGA: 28
CCC: 26
TAT: 25
TCC: 25
ATG: 25
AAG: 24
TAC: 22
ACC: 22
ACA: 20
TGG: 17
TGA: 16
GTT: 15
GTA: 14
GGG: 14
TAA: 12
GTG: 6
GTC: 6
ACG: 4
TCG: 4
TAG: 3
CCG: 2
GGC: 2
TGC: 2
CGC: 2
AGC: 1
Total Codon Positions: 5151
NON-CODONS (unique count: 19)
A,AA,GT,TT,C,CA,AG,CT,GA,CC,AT,TC,TG,GG,GC,AC,TA,CG,G
17) Codon Usage Bias:
About: Thogoto virus segment 5, complete sequence (1418bp)
VERSION: NC_006507.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 0
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 0
ATAGAG (Terminator 3'5' prime) count: 0
CODONS & USE COUNT (most used to least used):
AGA: 44
GCA: 25
GCC: 25
AAC: 20
CAA: 15
AGG: 15
GCT: 15
AAT: 14
CAC: 13
CAT: 11
TGT: 11
GAC: 11
GAT: 11
CGG: 11
CGA: 11
CTC: 10
CTT: 10
TCT: 7
CTA: 7
GGT: 7
CGT: 7
GCG: 7
CTG: 6
ACA: 5
GGG: 5
GTC: 4
AGT: 4
CCA: 4
ATC: 4
ATT: 4
GAG: 4
CAG: 4
ACT: 3
CCC: 3
CCT: 3
TTC: 3
TTT: 3
TTG: 3
TTA: 3
TGG: 2
ACC: 2
TCC: 2
AAG: 2
AAA: 2
GAA: 2
GTT: 1
TAC: 1
CCG: 1
ATG: 1
ATA: 1
GGA: 1
TGC: 1
CGC: (0)
GGC: (0)
TCA: (0)
TCG: (0)
AGC: (0)
ACG: (0)
TAT: (0)
GTA: (0)
GTG: (0)
TAA: (0)
TAG: (0)
TGA: (0)
Total Codon Positions: 391
NON-CODONS (unique count: 17)
A,AA,AG,GT,AC,CC,TG,TC,GG,CT,TT,AT,GA,TA,GC,CA,TT,T
18) Codon Usage Bias:
About: Human astrovirus, complete genome (6813bp)
VERSION: NC_001943.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 0
TATCTC (Terminator 5'3' prime) count: 1
ATATTT (Promoter 3'5' prime) count: 2
ATAGAG (Terminator 3'5' prime) count: 4
CODONS & USE COUNT (most used to least used):
GCA: 130
AGA: 129
AAC: 124
AAT: 113
TGT: 88
AGG: 85
GCT: 85
GCC: 80
GGT: 73
CAT: 67
GAT: 63
CAC: 59
GAC: 55
CTT: 54
CAA: 37
ATT: 36
CTC: 32
TTA: 31
GCG: 30
GAA: 29
CGA: 29
TTT: 28
CGT: 27
CTA: 24
CAG: 23
ATC: 19
ATA: 18
CTG: 17
CGG: 16
CCT: 15
GGA: 15
TTC: 12
ATG: 12
AAA: 12
GAG: 12
ACC: 11
TAT: 10
AGT: 10
AAG: 10
ACA: 9
ACT: 9
TCT: 9
CCA: 9
TGA: 8
GGG: 8
TAC: 7
CCC: 7
TTG: 7
GTG: 6
TGG: 6
TCA: 6
GTC: 5
GTT: 5
AGC: 4
TCC: 4
TAA: 3
TAG: 2
GTA: 2
CCG: 1
GGC: 1
TGC: 1
CGC: (0)
TCG: (0)
ACG: (0)
Total Codon Positions: 1839
NON-CODONS (unique count: 20)
G,TG,T,AT,C,AC,TA,CT,AA,AG,CA,TT,TC,GT,GG,GA,CC,CG,GC,C
19) Codon Usage Bias:
About: Hepatitis A virus (wild-type) RNA, complete genome (7478bp)
VERSION: M14707.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 5
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 3
ATAGAG (Terminator 3'5' prime) count: 3
CODONS & USE COUNT (most used to least used):
AAT: 186
AGA: 178
TGT: 131
GAT: 123
GCT: 101
AAC: 86
CTT: 85
GCA: 85
CAT: 83
AGG: 82
ATT: 66
TTT: 65
GGT: 65
TTA: 45
GAC: 45
TTG: 42
GCC: 38
TTC: 37
CAA: 36
CTC: 32
CAG: 31
GAA: 27
CTA: 24
CAC: 24
AGT: 23
GAG: 22
CTG: 21
ATC: 20
ATA: 18
TCT: 14
CCT: 14
ATG: 13
GTT: 12
GGA: 12
GTG: 9
TAT: 9
TGG: 9
TCC: 9
ACT: 8
CCA: 8
AAA: 8
GGG: 8
CGG: 8
TGA: 6
TAA: 5
GTC: 5
TAC: 5
ACA: 5
TCA: 5
AAG: 5
CGA: 5
CGT: 5
CCC: 4
GCG: 4
TAG: 3
GTA: 3
ACC: 3
TGC: 1
CGC: (0)
GGC: (0)
CCG: (0)
TCG: (0)
AGC: (0)
ACG: (0)
Total Codon Positions: 2026
NON-CODONS (unique count: 18)
A,GG,C,TT,CC,TC,GT,CG,TA,AC,CT,AG,TG,AT,CA,GA,AA,TA
20) Codon Usage Bias:
About: Influenza C virus (C/Ann Arbor/1/50) P3 gene for polymerase 3, complete cds (2183bp)
VERSION: NC_006309.2
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 1
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 1
ATAGAG (Terminator 3'5' prime) count: 0
CODONS & USE COUNT (most used to least used):
AAT: 84
AGA: 73
AAC: 31
GCA: 28
GCT: 28
CTT: 24
AGG: 24
GAT: 23
TGT: 21
ATT: 19
CAT: 18
CAA: 18
GCC: 14
TTA: 12
GAC: 12
TTT: 11
AAA: 11
CTA: 10
GGA: 10
GGT: 10
GAA: 10
ATA: 9
GAG: 7
CGA: 6
TGG: 5
ACA: 5
AGT: 5
CTC: 5
CAC: 5
TCT: 4
AAG: 4
TGA: 3
GTT: 3
ACC: 3
CCC: 3
CCT: 3
TTC: 3
ATG: 3
TTG: 3
ATC: 3
GGG: 3
CAG: 3
GTA: 2
TAC: 2
ACT: 2
TCA: 2
CCA: 2
CTG: 2
CGT: 2
GCG: 2
TAA: 1
GTC: 1
TCC: 1
GGC: 1
TGC: 1
CGG: 1
CGC: (0)
CCG: (0)
TCG: (0)
AGC: (0)
ACG: (0)
TAT: (0)
GTG: (0)
TAG: (0)
Total Codon Positions: 601
NON-CODONS (unique count: 18)
A,C,GT,GA,CT,AA,CA,G,TC,GG,TT,TA,AG,TG,AT,CC,AC,T
21) Codon Usage Bias:
About: Measles virus (strain Edmonston), complete genome (15894bp)
VERSION: K01711.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 6
TATCTC (Terminator 5'3' prime) count: 4
ATATTT (Promoter 3'5' prime) count: 3
ATAGAG (Terminator 3'5' prime) count: 7
CODONS & USE COUNT (most used to least used):
AGA: 324
AAT: 263
GCA: 259
AGG: 240
GCT: 225
AAC: 213
GCC: 200
GAT: 189
CAT: 176
TGT: 154
CAC: 126
CGA: 113
CTT: 108
GAC: 106
CGG: 97
CTC: 94
GGT: 91
CAA: 91
ATC: 85
ATT: 82
CCC: 69
GCG: 62
CCT: 58
CTA: 51
CAG: 50
TTA: 48
ATA: 44
GAA: 44
CTG: 41
CGT: 41
AGT: 40
TTC: 40
TTT: 36
TTG: 33
GAG: 31
GTT: 27
AAG: 26
ACC: 25
GGG: 25
TCA: 24
CCA: 24
GGA: 23
ATG: 22
AAA: 22
TAT: 19
TCT: 19
ACA: 18
TGG: 17
ACT: 15
TCC: 13
GTA: 11
TAC: 11
GTG: 10
GTC: 10
TGA: 7
TAA: 7
TAG: 6
TCG: 3
CCG: 3
ACG: 2
TGC: 1
CGC: 1
GGC: (0)
AGC: (0)
Total Codon Positions: 4315
NON-CODONS (unique count: 20)
A,G,C,GT,CA,TT,TA,GG,CC,GA,CT,TC,AT,AC,CG,TG,AA,AG,GC,CT
22) Codon Usage Bias:
About: Rabies virus genomic RNA, complete genome, strain:Nishigahara (11926bp)
VERSION: AB044824.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 5
TATCTC (Terminator 5'3' prime) count: 4
ATATTT (Promoter 3'5' prime) count: 3
ATAGAG (Terminator 3'5' prime) count: 4
CODONS & USE COUNT (most used to least used):
AGA: 307
TGT: 168
AAC: 161
AGG: 161
AAT: 146
CTT: 145
GCA: 139
GCT: 136
CAT: 126
GAT: 122
GCC: 104
CTC: 98
CGA: 95
GAC: 82
CAC: 76
GGT: 69
ATT: 61
CAA: 59
TTT: 57
CTA: 57
ATC: 50
CGG: 48
CGT: 48
CTG: 44
CAG: 44
GAG: 39
CCT: 38
GAA: 38
AGT: 37
ATA: 36
GGA: 32
GCG: 32
TTC: 31
AAA: 31
TTA: 31
TTG: 30
TCT: 24
AAG: 24
CCC: 23
GGG: 23
TCA: 18
TCC: 18
CCA: 17
TGG: 16
TAT: 14
ATG: 13
GTT: 12
TGA: 11
ACT: 11
GTC: 10
ACA: 8
TAC: 7
ACC: 6
TAG: 4
TAA: 4
GTG: 4
ACG: 4
GTA: 3
TCG: 3
CCG: 1
GGC: 1
TGC: 1
CGC: (0)
AGC: (0)
Total Codon Positions: 3258
NON-CODONS (unique count: 19)
AC,T,AA,CA,TT,GT,G,AT,CT,TG,TA,CC,TC,GG,GA,CG,AG,GC,TT,T
23) Codon Usage Bias:
About: Influenza C virus (C/Ann Arbor/1/50) PB1 gene for polymerase 1, complete cds (2363bp)
VERSION: NC_006308.2
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 2
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 3
ATAGAG (Terminator 3'5' prime) count: 1
CODONS & USE COUNT (most used to least used):
AGA: 81
AAT: 74
AAC: 44
GCA: 32
GAT: 26
GCT: 26
CTT: 25
TGT: 25
AGG: 24
ATT: 21
CAT: 20
GAA: 18
TTT: 14
GAC: 13
GCC: 13
AAA: 12
ATA: 12
TTA: 10
CTC: 10
AGT: 9
ACT: 8
GGT: 8
TTG: 7
GGG: 7
GAG: 7
AAG: 6
CTA: 6
GGA: 6
CAA: 6
GCG: 6
CAC: 5
TAT: 4
TCA: 4
TTC: 4
ATG: 4
CAG: 4
TGG: 3
CCT: 3
ATC: 3
CGG: 3
CGT: 3
TGA: 2
GTA: 2
GTT: 2
ACA: 2
TCC: 2
CTG: 2
CGA: 2
GTC: 1
ACC: 1
CCA: 1
CCC: 1
CGC: (0)
TGC: (0)
GGC: (0)
CCG: (0)
TCT: (0)
TCG: (0)
AGC: (0)
ACG: (0)
TAC: (0)
GTG: (0)
TAA: (0)
TAG: (0)
Total Codon Positions: 634
NON-CODONS (unique count: 18)
A,G,AT,C,CC,AA,CA,AC,TA,TT,TC,GA,CT,GG,GT,TG,AG,AA
24) Codon Usage Bias:
About: La Crosse virus segment S, complete genome (984bp)
VERSION: NC_004110.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 1
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 0
ATAGAG (Terminator 3'5' prime) count: 0
CODONS & USE COUNT (most used to least used):
AAT: 32
GCA: 23
AGG: 16
GAT: 14
AAC: 14
AGA: 13
GCT: 12
TGT: 10
GGT: 9
GCC: 8
CTT: 7
ATC: 7
CTC: 6
ATT: 6
CAC: 6
CAT: 6
GAC: 6
TTT: 5
CTA: 5
AAG: 4
TTA: 4
ATA: 4
CCT: 3
ATG: 3
TTG: 3
GGA: 3
GAG: 3
CAG: 3
CAA: 3
CGA: 3
TGA: 2
GTT: 2
TGG: 2
AGT: 2
CCC: 2
TTC: 2
GGG: 2
GAA: 2
GCG: 2
TAA: 1
GTG: 1
GTC: 1
TAT: 1
ACT: 1
TCC: 1
TCT: 1
CCA: 1
AAA: 1
CTG: 1
CGG: 1
CGT: (0)
CGC: (0)
TGC: (0)
GGC: (0)
CCG: (0)
TCA: (0)
TCG: (0)
AGC: (0)
ACC: (0)
ACA: (0)
ACG: (0)
TAC: (0)
GTA: (0)
TAG: (0)
Total Codon Positions: 270
NON-CODONS (unique count: 17)
AG,A,T,C,GT,TC,TT,TG,AA,TA,GG,CC,AC,CT,CA,GA,T
25) Codon Usage Bias:
About: Rotavirus C segment 1, complete sequence (3309bp)
VERSION: NC_007547.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 6
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 3
ATAGAG (Terminator 3'5' prime) count: 3
CODONS & USE COUNT (most used to least used):
AAT: 137
AGA: 91
CAT: 45
GCT: 39
GAT: 37
AAC: 37
GCA: 37
ATT: 36
TGT: 36
TTA: 35
AAA: 26
ATA: 22
ATC: 18
CGA: 17
AGT: 16
GAA: 16
CAC: 15
CAA: 15
GCG: 14
CTA: 13
GAC: 12
CGT: 11
ATG: 10
AGG: 10
TAT: 9
TTT: 9
CAG: 9
TTC: 8
CTT: 8
GGT: 8
GCC: 8
CTC: 7
ACT: 6
TAA: 5
TAC: 5
TCA: 5
CTG: 5
GTG: 4
GTT: 4
TTG: 4
CGG: 4
TGA: 3
ACC: 3
AAG: 3
GAG: 3
TGG: 2
CCT: 2
GGA: 2
GGC: 2
TAG: 1
GTC: 1
ACG: 1
ACA: 1
CCA: 1
GGG: 1
CGC: (0)
TGC: (0)
CCC: (0)
CCG: (0)
TCT: (0)
TCC: (0)
TCG: (0)
AGC: (0)
GTA: (0)
Total Codon Positions: 879
NON-CODONS (unique count: 18)
G,T,TA,C,GT,AC,GG,AA,CA,TT,GA,AT,CC,TG,CT,TC,AG,G
26) Codon Usage Bias:
About: Yellow fever virus strain Trinidad 79A isolate 788379, complete genome (10760bp)
VERSION: AF094612.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 1
TATCTC (Terminator 5'3' prime) count: 4
ATATTT (Promoter 3'5' prime) count: 1
ATAGAG (Terminator 3'5' prime) count: 5
CODONS & USE COUNT (most used to least used):
AGA: 219
GCT: 181
AGG: 175
GCA: 168
GCC: 154
TGT: 138
AAC: 129
GAC: 122
AAT: 122
CAT: 121
GAT: 121
GGT: 105
CTT: 79
GAA: 72
CAC: 66
GCG: 50
CTC: 48
AGT: 40
CTG: 39
TTG: 38
ATT: 38
CAA: 38
CGG: 38
GAG: 37
CAG: 34
GGA: 33
CGA: 33
TTT: 32
ATC: 32
TGG: 30
CGT: 29
CCT: 28
ATG: 27
CTA: 26
TTC: 25
GGG: 25
AAA: 23
AAG: 20
TTA: 20
ATA: 18
TCA: 14
TCC: 14
GTG: 13
ACT: 13
CCA: 13
CCC: 12
GTT: 11
ACA: 9
ACC: 9
TGA: 8
TGC: 8
TCT: 7
TAT: 6
GTC: 5
TAC: 5
TAA: 3
GTA: 3
ACG: 2
AGC: 2
CCG: 2
CGC: 2
TAG: 1
GGC: 1
TCG: (0)
Total Codon Positions: 2936
NON-CODONS (unique count: 18)
A,CC,GT,TG,TT,CT,AG,TC,AT,CA,AA,GA,GG,AC,TA,CG,GC,A,T
27) Codon Usage Bias:
About: Aichi virus, complete genome (8251bp)
VERSION: NC_001918.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 1
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 0
ATAGAG (Terminator 3'5' prime) count: 1
CODONS & USE COUNT (most used to least used):
GCC: 181
CTC: 165
GCT: 154
AAC: 137
CAC: 124
CTT: 103
CAT: 94
CCC: 93
GCA: 89
CGG: 83
TGT: 73
GCG: 72
CGT: 67
AAT: 64
CGA: 64
GAC: 51
AGG: 51
CTA: 45
GGT: 45
AGA: 45
GAT: 35
CAA: 34
CCT: 33
ATC: 32
CTG: 29
TTC: 28
CCA: 22
CAG: 21
TCC: 18
GAA: 18
ACC: 16
AGT: 13
TCT: 12
GAG: 12
GTG: 9
TTT: 9
GGA: 9
TGA: 8
TGG: 8
TTG: 8
GGC: 8
ATT: 7
TCA: 6
CCG: 6
GGG: 6
GTT: 5
ATG: 5
AAA: 5
TTA: 5
ATA: 5
CGC: 5
GTC: 4
ACA: 4
ACT: 4
AAG: 4
TAC: 3
TCG: 3
TAG: 2
GTA: 2
TAT: 2
TAA: 1
ACG: 1
AGC: 1
TGC: 1
Total Codon Positions: 2269
NON-CODONS (unique count: 19)
T,CT,CC,AC,TA,GT,G,TC,CA,AT,GC,TG,GA,AG,AA,CG,GG,TT,T,AC
28) Codon Usage Bias:
About: Lassa virus segment L, complete sequence (7279bp)
VERSION: NC_004297.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 1
TATCTC (Terminator 5'3' prime) count: 2
ATATTT (Promoter 3'5' prime) count: 0
ATAGAG (Terminator 3'5' prime) count: 2
CODONS & USE COUNT (most used to least used):
AAT: 158
AAC: 131
AGA: 125
CTT: 121
TGT: 116
CAT: 108
GCA: 96
GCT: 83
GAT: 78
CAC: 71
CTC: 69
GCC: 64
AGG: 59
ATT: 56
GAC: 42
GGT: 41
CTA: 35
AGT: 33
TTT: 32
TTA: 31
ATC: 31
CAA: 30
CAG: 29
TTC: 28
CCC: 22
CCT: 21
ATA: 19
CGA: 18
AAA: 16
GAA: 15
CGG: 14
CGT: 13
TCT: 12
TTG: 12
GCG: 12
ACT: 11
TCC: 11
TCA: 10
CTG: 10
GAG: 10
ACA: 9
GTC: 7
CCA: 7
AAG: 7
GTG: 6
GTA: 6
TAT: 6
TAA: 5
ACC: 5
ATG: 5
GGA: 5
TGA: 4
GTT: 4
TGG: 4
GGG: 4
TAG: 2
TAC: 2
ACG: 1
GGC: 1
TGC: 1
CGC: (0)
CCG: (0)
TCG: (0)
AGC: (0)
Total Codon Positions: 1984
NON-CODONS (unique count: 19)
C,G,T,TT,GC,CA,AA,CC,AT,TC,GA,CT,AC,GT,AG,TG,TA,GG,T
29) Codon Usage Bias:
About: Human T-lymphotropic virus 1, complete genome (8507bp)
VERSION: NC_001436.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 4
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 5
ATAGAG (Terminator 3'5' prime) count: 0
CODONS & USE COUNT (most used to least used):
GCC: 280
CTC: 133
GCT: 121
AAC: 113
GCA: 106
CTT: 101
AGA: 97
CAC: 95
AAT: 92
CAT: 85
TGT: 71
CCC: 68
CTA: 56
CCT: 55
AGG: 53
CAA: 52
GAC: 48
CAG: 43
CGA: 43
CGT: 43
ATT: 40
CGG: 38
ATC: 37
TTC: 36
GCG: 34
TTA: 28
CTG: 26
TTT: 25
GAT: 25
ATA: 24
CCA: 22
TCC: 19
GGT: 19
GAG: 15
ACT: 13
AGT: 13
AAG: 13
ACC: 12
AAA: 11
GAA: 11
TAC: 10
TGG: 9
TCA: 9
TCT: 9
GGG: 8
ACA: 7
GGA: 6
TAT: 5
TTG: 5
TGC: 5
GTA: 4
GTC: 4
CCG: 4
GGC: 4
CGC: 4
ACG: 3
TCG: 3
ATG: 3
TGA: 2
GTG: 2
AGC: 2
TAG: 1
GTT: 1
TAA: (0)
Total Codon Positions: 2326
NON-CODONS (unique count: 20)
G,C,T,TC,CA,TA,CC,TT,CT,TG,GA,GT,GC,GG,AA,AC,CG,AG,AT,T
30) Codon Usage Bias:
About: Lassa virus segment S, complete sequence (3402bp)
VERSION: NC_004296.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 3
TATCTC (Terminator 5'3' prime) count: 2
ATATTT (Promoter 3'5' prime) count: 0
ATAGAG (Terminator 3'5' prime) count: 1
CODONS & USE COUNT (most used to least used):
AAT: 69
AGA: 64
GCA: 58
TGT: 54
GCT: 50
CAT: 44
GAT: 43
AGG: 40
AAC: 38
GAC: 35
CTT: 33
GCC: 32
GGT: 28
CAC: 24
CAG: 21
CTC: 17
GAA: 16
CAA: 16
TTA: 14
ATT: 14
ATC: 12
TTG: 11
CTG: 11
GTT: 10
CTA: 10
AAG: 9
ATA: 9
GAG: 9
CGG: 9
CGT: 9
AGT: 8
TCA: 8
CCT: 8
CGA: 8
GCG: 7
TCC: 6
TCT: 6
CCC: 6
TAC: 5
TGG: 5
TTC: 5
AAA: 5
GGA: 5
ATG: 4
ACA: 3
ACT: 3
CCA: 3
GGG: 3
TAA: 2
GTG: 2
GTA: 2
GTC: 2
TAT: 2
ACC: 2
TGC: 2
TGA: 1
ACG: 1
TCG: 1
TTT: 1
CGC: (0)
GGC: (0)
CCG: (0)
AGC: (0)
TAG: (0)
Total Codon Positions: 925
NON-CODONS (unique count: 18)
C,TG,TT,AG,AC,AT,A,AA,CC,GC,GA,CT,TC,GT,GG,CA,TA,T,C
31) Codon Usage Bias:
About: Influenza A virus (A/Puerto Rico/8/1934(H1N1)) segment 4, complete sequence (1778bp)
VERSION: NC_002017.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 1
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 2
ATAGAG (Terminator 3'5' prime) count: 0
CODONS & USE COUNT (most used to least used):
AAT: 47
AGA: 40
AAC: 33
GCA: 27
TGT: 25
AGG: 25
GCT: 22
GAT: 18
CAT: 15
ATT: 13
GAA: 13
CAC: 12
CAA: 12
GAC: 12
GCC: 12
GGT: 11
AGT: 9
ATC: 9
AAA: 8
CTG: 8
CGA: 8
ATG: 7
CTA: 7
CGG: 7
TTT: 6
TTA: 6
CTC: 6
CTT: 6
GAG: 6
CAG: 6
GCG: 5
CCA: 4
GGG: 4
GGA: 4
TAT: 3
TGG: 3
CCT: 3
TTC: 3
ATA: 3
CGT: 3
GTG: 2
TAC: 2
ACC: 2
CCC: 2
TTG: 2
TGA: 1
TAA: 1
GTT: 1
ACA: 1
TCA: 1
TCC: 1
TCT: 1
CCG: 1
AAG: 1
CGC: (0)
TGC: (0)
GGC: (0)
TCG: (0)
AGC: (0)
ACT: (0)
ACG: (0)
GTC: (0)
GTA: (0)
TAG: (0)
Total Codon Positions: 490
NON-CODONS (unique count: 17)
A,G,CT,CC,TA,AC,TC,GA,CA,AA,GT,AT,TG,TT,GG,AG,TT,CT
32) Codon Usage Bias:
About: Influenza B virus RNA 1, complete sequence (2368bp)
VERSION: NC_002204.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 4
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 1
ATAGAG (Terminator 3'5' prime) count: 0
CODONS & USE COUNT (most used to least used):
AAT: 67
AGA: 59
AAC: 45
GCA: 37
GAT: 33
AGG: 31
GCT: 30
TGT: 26
CAT: 19
GCC: 19
CTT: 17
GAA: 16
GAC: 16
ATT: 15
AAA: 13
TTA: 11
GGT: 11
TTT: 10
ATG: 10
TTG: 10
CAC: 10
CGA: 10
AGT: 9
CTA: 8
CAA: 8
CGG: 8
TAT: 7
ATA: 7
GAG: 7
CCT: 6
ATC: 6
GGA: 6
CAG: 6
TAA: 4
TGG: 4
CTG: 4
CGT: 4
GCG: 4
ACA: 3
TCC: 3
TCT: 3
AAG: 3
TGA: 2
GTG: 2
GTT: 2
ACG: 2
ACC: 2
CCA: 2
TTC: 2
CTC: 2
GGG: 2
TAG: 1
GTA: 1
TAC: 1
ACT: 1
CCC: 1
CGC: (0)
TGC: (0)
GGC: (0)
CCG: (0)
TCA: (0)
TCG: (0)
AGC: (0)
GTC: (0)
Total Codon Positions: 648
NON-CODONS (unique count: 18)
A,GA,T,TT,TC,CC,CT,G,AG,GT,GG,TG,AT,AC,CA,AA,TA,G,CT
33) Codon Usage Bias:
About: Influenza C virus (C/Ann Arbor/1/50) M1, CM2 genes for matrix protein, CM2 protein, complete cds (1180bp)
VERSION: NC_006312.2
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 1
TATCTC (Terminator 5'3' prime) count: 1
ATATTT (Promoter 3'5' prime) count: 0
ATAGAG (Terminator 3'5' prime) count: 0
CODONS & USE COUNT (most used to least used):
AAT: 38
AGA: 30
GCA: 22
AAC: 19
GCT: 16
GAT: 15
GAA: 14
AGG: 12
TGT: 11
CTT: 9
CAT: 9
GCC: 9
ATT: 8
CAC: 8
AAA: 7
CGA: 7
TTG: 6
GGT: 6
GAC: 6
AGT: 5
CTG: 5
CTA: 5
TAT: 4
TTT: 4
ATG: 4
ATA: 4
ACT: 3
TTC: 3
AAG: 3
ATC: 3
GGG: 3
GGA: 3
GAG: 3
TGA: 2
TAC: 2
ACA: 2
TCT: 2
CCC: 2
CTC: 2
CAA: 2
GCG: 2
TAA: 1
GTA: 1
GTT: 1
TGG: 1
ACC: 1
CCT: 1
TTA: 1
CGT: 1
CGC: (0)
CGG: (0)
TGC: (0)
CAG: (0)
GGC: (0)
CCA: (0)
CCG: (0)
TCC: (0)
TCA: (0)
TCG: (0)
AGC: (0)
ACG: (0)
GTC: (0)
GTG: (0)
TAG: (0)
Total Codon Positions: 328
NON-CODONS (unique count: 18)
A,TT,G,GA,C,CC,AT,AA,CA,TA,GT,AC,GG,TG,TC,CT,CG,AA
34) Codon Usage Bias:
About: Influenza A virus (A/Puerto Rico/8/1934(H1N1)) segment 7, complete sequence (1027bp)
VERSION: NC_002016.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 0
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 0
ATAGAG (Terminator 3'5' prime) count: 1
CODONS & USE COUNT (most used to least used):
GCA: 24
AGA: 19
GCT: 18
AAT: 15
GCC: 14
AGG: 12
CTT: 11
TGT: 11
GAT: 11
AAC: 11
CAT: 10
GGT: 10
CAC: 7
GAC: 7
CGA: 7
CTA: 6
GAA: 6
CAG: 6
CGT: 6
ATT: 5
CGG: 5
ATG: 4
AAA: 4
TTA: 4
GGG: 4
GAG: 4
GCG: 4
GTG: 3
AGT: 3
CTC: 3
CAA: 3
TGG: 2
ACT: 2
CCT: 2
TTC: 2
TTT: 2
TTG: 2
ATA: 2
GGA: 2
TGA: 1
GTT: 1
ACC: 1
TCT: 1
CCA: 1
CCC: 1
AAG: 1
CTG: 1
ATC: 1
CGC: (0)
TGC: (0)
GGC: (0)
CCG: (0)
TCC: (0)
TCA: (0)
TCG: (0)
AGC: (0)
ACA: (0)
ACG: (0)
TAT: (0)
TAC: (0)
GTC: (0)
GTA: (0)
TAA: (0)
TAG: (0)
Total Codon Positions: 282
NON-CODONS (unique count: 18)
A,T,CT,AA,CC,G,TC,GG,CA,TA,AT,TT,GT,AG,AC,TG,GA,TT,CT
35) Codon Usage Bias:
About: Norovirus GI, complete genome (7654bp)
VERSION: NC_001959.2
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 4
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 1
ATAGAG (Terminator 3'5' prime) count: 0
CODONS & USE COUNT (most used to least used):
AGA: 139
GCC: 135
AAT: 133
GCA: 112
GCT: 108
AGG: 99
GAT: 91
TGT: 89
GGT: 88
AAC: 84
CAT: 78
CAC: 69
GAC: 59
CTT: 55
CAA: 42
ATT: 39
CGG: 34
GCG: 34
CGT: 33
CCC: 32
CGA: 32
CTA: 29
CTC: 29
CAG: 25
ATC: 23
AGT: 22
CCT: 22
TTG: 22
TTC: 21
TTT: 21
GAA: 21
ATA: 20
TCA: 18
ATG: 17
TTA: 17
GGG: 16
GAG: 16
TGG: 14
CTG: 14
GGA: 13
TAT: 12
AAA: 12
GTG: 10
GTA: 10
TGA: 9
ACT: 9
TCC: 9
ACC: 8
CCA: 8
GTC: 6
GTT: 6
TAC: 6
ACA: 6
AAG: 6
TCT: 5
TAA: 4
TGC: 4
ACG: 3
GGC: 3
CGC: 2
TAG: 1
TCG: 1
CCG: (0)
AGC: (0)
Total Codon Positions: 2105
NON-CODONS (unique count: 20)
G,T,A,TC,CT,GT,CC,CA,TG,GG,AC,AA,TT,TA,GA,AT,CG,GC,AG,TT
36) Codon Usage Bias:
About: Vesicular stomatitis Indiana virus, complete genome (11161bp)
VERSION: J02428.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 2
TATCTC (Terminator 5'3' prime) count: 3
ATATTT (Promoter 3'5' prime) count: 5
ATAGAG (Terminator 3'5' prime) count: 1
CODONS & USE COUNT (most used to least used):
AGA: 270
AAT: 259
CAT: 153
GAT: 146
GCA: 146
TGT: 132
AGG: 124
CTT: 123
GCT: 121
AAC: 118
CGA: 85
ATT: 81
GAC: 81
GCC: 80
GGT: 65
CAA: 65
CTC: 57
CAC: 56
ATC: 54
GAA: 50
CGG: 50
TTT: 45
CTA: 45
TTC: 40
TTG: 39
CAG: 35
CGT: 35
AGT: 34
AAA: 29
GAG: 29
ATA: 28
TCT: 26
CTG: 26
CCT: 25
AAG: 24
TTA: 24
TAT: 21
ATG: 21
GCG: 21
GGA: 19
TCA: 18
GTT: 15
TGG: 15
CCC: 15
CCA: 14
GGG: 14
TAC: 12
ACA: 12
ACT: 12
TCC: 12
ACC: 9
TGA: 5
GTG: 5
TAA: 4
TAG: 2
GTA: 2
GTC: 2
AGC: 1
TCG: 1
CCG: 1
GGC: 1
CGC: (0)
TGC: (0)
ACG: (0)
Total Codon Positions: 3054
NON-CODONS (unique count: 20)
A,CA,T,AT,AG,C,TA,CT,GT,AA,TT,AC,CC,TG,GG,TC,GA,CG,GC,TT
37) Codon Usage Bias:
About: Influenza C virus (C/Ann Arbor/1/50) HEF gene for hemagglutinin-esterase-fusion, complete cds (2073bp)
VERSION: NC_006310.2
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 2
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 1
ATAGAG (Terminator 3'5' prime) count: 1
CODONS & USE COUNT (most used to least used):
AAT: 49
AGA: 45
GCT: 40
GCA: 34
AAC: 31
AGG: 25
CTT: 23
TGT: 23
GAT: 23
GAC: 17
CAT: 15
GAA: 15
GCC: 15
ATT: 14
CAC: 14
CAA: 13
AAA: 12
ATC: 11
GGT: 9
AGT: 8
TTT: 8
TTG: 8
CTA: 8
TGG: 7
CTC: 6
ACT: 5
CCA: 5
TTC: 5
TTA: 5
ATA: 5
GGA: 5
GAG: 5
CAG: 5
TAT: 4
TCC: 4
TCT: 4
CCC: 4
CTG: 4
GGG: 4
TGA: 3
GTT: 3
TCA: 3
AAG: 3
CGG: 3
CGA: 3
GTG: 2
ACA: 2
CCT: 2
CGT: 2
GCG: 2
TAA: 1
GTC: 1
TAC: 1
ATG: 1
CGC: (0)
TGC: (0)
GGC: (0)
CCG: (0)
TCG: (0)
AGC: (0)
ACC: (0)
ACG: (0)
GTA: (0)
TAG: (0)
Total Codon Positions: 569
NON-CODONS (unique count: 17)
A,GG,TT,AA,TA,AT,TC,TG,CA,CT,GC,AC,CC,AG,GT,GA,A
38) Codon Usage Bias:
About: Influenza B virus (B/Lee/1940) segment 8, complete sequence (1096bp)
VERSION: NC_002211.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 1
TATCTC (Terminator 5'3' prime) count: 1
ATATTT (Promoter 3'5' prime) count: 0
ATAGAG (Terminator 3'5' prime) count: 0
CODONS & USE COUNT (most used to least used):
AGA: 30
AAT: 26
AAC: 15
GCA: 15
TGT: 14
AGG: 14
CTT: 11
GCT: 11
GAA: 10
GAT: 10
GAC: 9
GCC: 9
CGA: 8
AAA: 7
CAC: 7
CTC: 6
CAT: 6
GGT: 6
CGG: 6
AGT: 5
ATA: 5
ATC: 5
ATT: 5
CAA: 5
ATG: 4
TTG: 3
TTA: 3
GAG: 3
GCG: 3
GTA: 2
TAT: 2
TGG: 2
ACA: 2
ACT: 2
CCA: 2
CCT: 2
TTT: 2
CTG: 2
CTA: 2
GGA: 2
CGT: 2
TGA: 1
TAA: 1
GTG: 1
GTC: 1
TAC: 1
ACC: 1
CCC: 1
GGG: 1
CAG: 1
CGC: (0)
TGC: (0)
GGC: (0)
AAG: (0)
TTC: (0)
CCG: (0)
TCT: (0)
TCC: (0)
TCA: (0)
TCG: (0)
AGC: (0)
ACG: (0)
GTT: (0)
TAG: (0)
Total Codon Positions: 294
NON-CODONS (unique count: 17)
C,G,T,TG,AA,AT,GA,AC,GG,CT,CA,CC,TA,TC,GT,TT,TA,CT
39) Codon Usage Bias:
About: Influenza A virus (A/Puerto Rico/8/1934(H1N1)) segment 1, complete sequence (2341bp)
VERSION: NC_002023.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 0
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 0
ATAGAG (Terminator 3'5' prime) count: 0
CODONS & USE COUNT (most used to least used):
AGA: 70
AAT: 56
GCA: 48
GAT: 32
AAC: 30
AGG: 29
GGT: 22
TGT: 22
GCT: 21
CAT: 18
GCC: 18
GAC: 17
CGA: 17
ATT: 14
CTC: 13
CTT: 13
CAG: 12
CAA: 12
CTA: 11
ATA: 10
CGG: 10
GAA: 9
ATG: 8
AAA: 8
GCG: 8
TTA: 7
ATC: 7
CAC: 7
GGG: 7
GAG: 7
GTT: 6
ACA: 6
TTT: 6
CTG: 6
TGG: 5
AGT: 5
TCA: 5
CGT: 5
GTG: 4
CCC: 4
CCT: 4
GGA: 4
GTC: 3
ACC: 3
AAG: 3
TGA: 2
TAA: 2
GTA: 2
ACT: 2
TCC: 2
TTC: 2
TTG: 2
TAG: 1
TAC: 1
TAT: 1
CGC: (0)
TGC: (0)
GGC: (0)
CCA: (0)
CCG: (0)
TCT: (0)
TCG: (0)
AGC: (0)
ACG: (0)
Total Codon Positions: 649
NON-CODONS (unique count: 18)
A,C,AA,CT,GT,TA,G,AT,CA,TC,GA,TG,GG,TT,AG,CC,AC,TT,CT
40) Codon Usage Bias:
About: Influenza C virus (C/Ann Arbor/1/50) segment 5, complete sequence (1807bp)
VERSION: NC_006311.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 1
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 1
ATAGAG (Terminator 3'5' prime) count: 1
CODONS & USE COUNT (most used to least used):
AGA: 63
AAT: 58
GCA: 41
GCT: 24
GAA: 23
AAC: 22
GCC: 18
CTT: 17
GAT: 17
TGT: 15
AGG: 15
CAT: 14
TTT: 13
CAA: 11
ATT: 10
GAC: 10
AAA: 9
CTC: 8
CTA: 7
CAC: 7
GGA: 6
TAT: 5
TGG: 5
TTC: 5
GGT: 5
CGA: 5
TCA: 4
TCT: 4
AAG: 4
TTG: 4
TTA: 4
CTG: 4
ATA: 4
GAG: 4
AGT: 3
ATG: 3
CAG: 3
CGG: 3
GCG: 3
TGA: 2
GTA: 2
GTT: 2
CCC: 2
ATC: 2
GTG: 1
GTC: 1
TAC: 1
ACA: 1
ACT: 1
TCC: 1
CCT: 1
CGT: 1
CGC: (0)
TGC: (0)
GGC: (0)
GGG: (0)
CCA: (0)
CCG: (0)
TCG: (0)
AGC: (0)
ACC: (0)
ACG: (0)
TAA: (0)
TAG: (0)
Total Codon Positions: 498
NON-CODONS (unique count: 17)
A,GG,C,AC,AA,CT,TA,TT,TC,CC,AT,GT,TG,CA,AG,GA,A
41) Codon Usage Bias:
About: Influenza B virus (B/Lee/1940) segment 6, complete sequence (1557bp)
VERSION: NC_002209.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 0
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 0
ATAGAG (Terminator 3'5' prime) count: 2
CODONS & USE COUNT (most used to least used):
AGA: 38
AAT: 31
GCA: 30
AAC: 29
TGT: 24
GAT: 20
GCT: 20
CTT: 17
CAT: 17
ATT: 15
GAC: 13
GCC: 13
GGT: 12
AGG: 12
CTA: 8
CAA: 8
CAC: 7
GAA: 7
CCT: 6
ATA: 6
ACA: 5
AGT: 5
AAA: 5
GAG: 5
CGG: 5
CGA: 5
TAT: 4
TCA: 4
ATG: 4
ATC: 4
GGG: 4
GGA: 4
GCG: 4
ACT: 3
CCC: 3
TTC: 3
TTT: 3
CTC: 3
GTG: 2
TTA: 2
CAG: 2
CGT: 2
TGA: 1
GTC: 1
TAC: 1
TGG: 1
TCT: 1
CCA: 1
AAG: 1
TTG: 1
CGC: (0)
TGC: (0)
GGC: (0)
CTG: (0)
CCG: (0)
TCC: (0)
TCG: (0)
AGC: (0)
ACC: (0)
ACG: (0)
GTT: (0)
GTA: (0)
TAA: (0)
TAG: (0)
Total Codon Positions: 422
NON-CODONS (unique count: 18)
A,GA,T,AG,AC,GG,AT,AA,CC,GT,CA,TC,TG,TT,CT,TA,CG,TA,CT
42) Codon Usage Bias:
About: Lymphocytic choriomeningitis virus segment S, complete sequence (3376bp)
VERSION: NC_004294.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 0
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 1
ATAGAG (Terminator 3'5' prime) count: 1
CODONS & USE COUNT (most used to least used):
AGA: 60
TGT: 59
GCT: 52
CTT: 49
AAC: 46
GCA: 46
GCC: 45
AAT: 44
CAT: 43
GAT: 39
AGG: 32
CAC: 28
GAC: 28
GGT: 27
CTC: 18
CAA: 18
TTT: 17
ATT: 16
CCT: 15
GAG: 15
TTC: 14
CAG: 14
CTG: 13
CTA: 13
CGA: 13
ATC: 12
GCG: 11
CCC: 9
TTG: 9
GAA: 8
CGG: 8
GTT: 7
AGT: 7
TCA: 7
TCC: 7
TTA: 7
ATA: 7
GGG: 7
AAG: 6
AAA: 6
TAT: 5
ACT: 5
CGT: 5
GTC: 4
ACC: 3
TCT: 3
CCA: 3
ATG: 3
GGA: 3
TGA: 2
TAG: 2
TAA: 2
GTA: 2
TAC: 2
TGG: 2
ACA: 2
TGC: 2
CCG: 1
CGC: (0)
GGC: (0)
TCG: (0)
AGC: (0)
ACG: (0)
GTG: (0)
Total Codon Positions: 933
NON-CODONS (unique count: 19)
C,G,TT,TC,CT,TG,AT,CA,GT,GG,CC,TA,AG,AC,GA,AA,CG,GC,T
43) Codon Usage Bias:
About: Mumps virus, complete genome (15384bp)
VERSION: AF201473.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 4
TATCTC (Terminator 5'3' prime) count: 5
ATATTT (Promoter 3'5' prime) count: 5
ATAGAG (Terminator 3'5' prime) count: 1
CODONS & USE COUNT (most used to least used):
AAT: 388
AGA: 312
GCA: 272
AAC: 214
GCT: 193
CAT: 173
TGT: 172
AGG: 158
GAT: 153
GCC: 148
CTT: 125
CAC: 124
ATT: 122
CGA: 98
CTC: 87
ATC: 87
GAC: 80
GGT: 77
TTA: 74
CTA: 72
CAA: 72
ATA: 64
CGG: 55
GCG: 55
AGT: 53
CAG: 47
CGT: 43
TTT: 42
CCT: 39
CTG: 37
GAG: 37
TTC: 34
GAA: 33
TAT: 32
CCC: 30
TTG: 30
AAA: 28
TCT: 25
CCA: 24
TCA: 23
GGG: 21
ACT: 20
ATG: 20
GTT: 19
TGG: 18
AAG: 18
GGA: 15
TGA: 14
ACA: 13
ACC: 13
TCC: 13
TAC: 12
TAA: 10
GTA: 10
GTC: 9
TAG: 6
GTG: 5
CCG: 3
AGC: 2
GGC: 1
TGC: 1
CGC: 1
TCG: (0)
ACG: (0)
Total Codon Positions: 4176
NON-CODONS (unique count: 20)
A,GG,AG,AA,T,GA,C,GT,AC,TC,CC,TA,AT,CT,TT,TG,CG,CA,GC,CC
44) Codon Usage Bias:
About: Influenza B virus (B/Lee/1940) segment 4, complete sequence (1882bp)
VERSION: NC_002207.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 1
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 0
ATAGAG (Terminator 3'5' prime) count: 1
CODONS & USE COUNT (most used to least used):
AAT: 47
AAC: 41
AGA: 38
GCA: 37
GCT: 32
AGG: 22
CAT: 19
TGT: 19
GAT: 19
CTT: 17
GCC: 16
CTA: 14
CTC: 14
GGT: 13
GAA: 13
CAA: 13
CAC: 10
TTT: 9
AAA: 9
ATC: 9
CGA: 9
AGT: 8
ATT: 7
GAC: 7
GGA: 6
TCT: 4
CCA: 4
ATG: 4
ATA: 4
GGG: 4
CGT: 4
TGA: 3
ACC: 3
ACT: 3
TTC: 3
AAG: 3
TTA: 3
CTG: 3
CGG: 3
GCG: 3
GTA: 2
GTC: 2
TAC: 2
TCA: 2
CCT: 2
GAG: 2
CAG: 2
TAA: 1
GTG: 1
GTT: 1
TAT: 1
TGG: 1
ACA: 1
AGC: 1
CCC: 1
TTG: 1
TGC: 1
CGC: (0)
GGC: (0)
CCG: (0)
TCC: (0)
TCG: (0)
ACG: (0)
TAG: (0)
Total Codon Positions: 523
NON-CODONS (unique count: 17)
A,TT,CA,G,AT,CT,C,GT,AC,CC,TA,TG,TC,AA,GG,GA,TA,CT
45) Codon Usage Bias:
About: Influenza A virus (A/Puerto Rico/8/1934(H1N1)) segment 3, complete sequence (2233bp)
VERSION: NC_002022.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 0
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 0
ATAGAG (Terminator 3'5' prime) count: 1
CODONS & USE COUNT (most used to least used):
AGA: 59
AAT: 58
GCA: 38
AAC: 32
AGG: 31
TGT: 27
GCT: 27
GAT: 23
CAT: 22
CTT: 20
GCC: 19
GAA: 16
CAC: 15
CAA: 15
CGA: 14
AGT: 13
ATT: 12
GAC: 12
TTT: 10
CTC: 10
GCG: 8
TTC: 7
ATA: 7
GGT: 7
GAG: 7
ACA: 6
AAA: 6
TTG: 6
CTG: 6
GGG: 6
CCA: 5
CTA: 5
GGA: 5
CGT: 5
TAT: 4
TCT: 4
CCT: 4
ATG: 4
AAG: 4
TTA: 4
ATC: 4
CAG: 4
TGA: 3
TGG: 3
ACT: 3
TCA: 3
TAA: 2
GTT: 2
ACC: 2
TCC: 2
GTC: 1
TAC: 1
ACG: 1
CCC: 1
CGG: 1
CGC: (0)
TGC: (0)
GGC: (0)
CCG: (0)
TCG: (0)
AGC: (0)
GTA: (0)
GTG: (0)
TAG: (0)
Total Codon Positions: 616
NON-CODONS (unique count: 19)
A,C,AC,TC,T,AA,G,TT,CT,GA,AG,TG,CC,AT,TA,GG,CA,GC,GT
46) Codon Usage Bias:
About: Influenza A virus (A/Puerto Rico/8/1934(H1N1)) segment 8, complete sequence (890bp)
VERSION: NC_002020.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 0
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 0
ATAGAG (Terminator 3'5' prime) count: 0
CODONS & USE COUNT (most used to least used):
AGA: 24
AAT: 18
GCA: 17
CAT: 13
AAC: 12
GCT: 12
GAT: 11
AGG: 11
CTT: 9
TGT: 8
GAC: 8
CGA: 7
GCG: 7
GCC: 7
AGT: 5
CAC: 5
GAA: 5
CCT: 4
ATT: 4
GGA: 4
GGT: 4
CAA: 4
TGA: 3
ACT: 3
TTC: 3
AAA: 3
TTG: 3
CTA: 3
CTC: 3
CAG: 3
TCT: 2
TTA: 2
ATC: 2
GAG: 2
GTT: 1
TAT: 1
TGG: 1
ACA: 1
ACC: 1
TCA: 1
CCA: 1
TTT: 1
ATG: 1
CTG: 1
GGG: 1
CGG: 1
CGT: 1
CGC: (0)
TGC: (0)
GGC: (0)
ATA: (0)
AAG: (0)
CCC: (0)
CCG: (0)
TCC: (0)
TCG: (0)
AGC: (0)
ACG: (0)
TAC: (0)
GTC: (0)
GTA: (0)
GTG: (0)
TAA: (0)
TAG: (0)
Total Codon Positions: 244
NON-CODONS (unique count: 16)
A,G,AA,AC,GT,TT,TG,CC,CA,TC,CG,CT,AT,GG,GA,TT,CT
47) Codon Usage Bias:
About: Western equine encephalomyelitis virus strain 71V-1658 nonstructural polyprotein and structural polyprotein genes, complete cds (11484bp)
VERSION: AF214040.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 2
TATCTC (Terminator 5'3' prime) count: 1
ATATTT (Promoter 3'5' prime) count: 2
ATAGAG (Terminator 3'5' prime) count: 2
CODONS & USE COUNT (most used to least used):
GCA: 230
AGA: 212
GCT: 191
GCC: 143
AAC: 142
AAT: 141
GCG: 133
AGG: 128
CAT: 126
TGT: 123
CAC: 120
CGA: 104
CGT: 99
GAT: 87
GAC: 83
CTT: 72
GGT: 56
ATT: 54
CTA: 53
CAA: 49
CAG: 46
CGG: 46
GAA: 45
ATC: 39
CTG: 35
CTC: 35
TTT: 34
AGT: 33
TTA: 32
TTC: 29
ATA: 29
GAG: 25
CCA: 23
GGA: 21
ACA: 20
ACC: 20
AAG: 20
AAA: 20
TCC: 19
TCT: 19
CCC: 17
CCT: 17
ATG: 16
GTA: 14
TAC: 14
GTC: 13
ACT: 13
TTG: 13
GTT: 12
GGG: 12
TGG: 11
TAT: 9
TCA: 9
CGC: 7
TGA: 6
GTG: 6
TCG: 4
CCG: 4
TGC: 4
TAA: 3
ACG: 3
TAG: 2
AGC: 1
GGC: (0)
Total Codon Positions: 3146
NON-CODONS (unique count: 18)
CA,T,TT,GT,GA,AG,TC,TG,AT,CC,AC,CT,TA,GG,AA,CG,GC,A
48) Codon Usage Bias:
About: GB virus C gene for polyprotein, complete cds, isolate: G05BD (8930bp)
VERSION: AB003292.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 0
TATCTC (Terminator 5'3' prime) count: 1
ATATTT (Promoter 3'5' prime) count: 1
ATAGAG (Terminator 3'5' prime) count: 1
CODONS & USE COUNT (most used to least used):
GCC: 236
GCT: 179
GGT: 125
GCG: 124
TGT: 116
GCA: 116
AGG: 107
CGG: 104
CAT: 85
GAC: 82
CTT: 81
CGT: 78
AGA: 69
CAC: 58
GAT: 54
CTC: 53
GGG: 48
AAC: 48
AAT: 48
CGA: 43
CTA: 37
CCC: 36
CTG: 34
CAG: 32
TTG: 30
GAG: 28
AGT: 24
CCT: 24
TTC: 24
ATT: 22
CAA: 21
GGA: 20
GAA: 20
TTA: 18
GTG: 17
TTT: 16
ATC: 15
TCC: 14
TCT: 14
ATG: 13
TCA: 12
CCA: 12
ATA: 12
TGG: 11
GTC: 10
ACT: 10
TGC: 9
GTT: 8
TAT: 8
ACC: 8
TGA: 7
GTA: 6
ACA: 6
TCG: 6
TAC: 5
AAA: 5
CGC: 5
TAG: 3
AGC: 3
CCG: 3
AAG: 3
ACG: 2
TAA: 1
GGC: 1
Total Codon Positions: 2469
Non-ACGT letters:
N@355 N@396 R@471 R@551 Y@787
NON-CODONS (unique count: 23)
A,T,TG,TA,TC,AA,CA,GT,AG,TT,AC,GG,CC,N,CT,ARAA,ARCC,AT,CG,GY,GA,GC,TG
49) Codon Usage Bias:
About: Influenza B virus (B/Lee/1940) segment 7, complete sequence (1191bp)
VERSION: NC_002210.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 0
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 0
ATAGAG (Terminator 3'5' prime) count: 1
CODONS & USE COUNT (most used to least used):
AAT: 40
AGA: 35
GCA: 26
AAC: 23
GCT: 19
AGG: 16
TGT: 14
GAA: 12
GCC: 9
CTT: 8
AAA: 7
CAC: 7
CAT: 7
GGT: 7
CAA: 7
TTG: 6
ATT: 6
CTA: 5
AGT: 4
TTC: 4
ATG: 4
TTA: 4
ATA: 4
GAC: 4
GAT: 4
CTC: 3
CGA: 3
TAC: 2
TGG: 2
ACA: 2
TCT: 2
CCA: 2
CCT: 2
TTT: 2
CTG: 2
GGA: 2
GAG: 2
CGG: 2
GCG: 2
GTA: 1
GTC: 1
TCA: 1
AAG: 1
ATC: 1
GGG: 1
CAG: 1
CGC: 1
CGT: 1
TGC: (0)
GGC: (0)
CCC: (0)
CCG: (0)
TCC: (0)
TCG: (0)
AGC: (0)
ACT: (0)
ACC: (0)
ACG: (0)
TAT: (0)
GTT: (0)
GTG: (0)
TAA: (0)
TAG: (0)
TGA: (0)
Total Codon Positions: 321
NON-CODONS (unique count: 19)
A,C,T,AA,GT,G,TA,TT,AG,CT,CC,CA,AT,AC,TC,GA,GG,TG,TT,CT
50) Codon Usage Bias:
About: Influenza C virus (C/Ann Arbor/1/50) segment 7, complete sequence (935bp)
VERSION: NC_006306.2
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 0
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 1
ATAGAG (Terminator 3'5' prime) count: 0
CODONS & USE COUNT (most used to least used):
AAT: 30
AGA: 26
GCA: 19
AAC: 12
GCT: 12
TGT: 11
CTT: 9
ATT: 9
CAA: 9
GAA: 7
GAT: 7
ATA: 6
CAT: 6
CGT: 6
GCC: 6
CCT: 5
TTT: 5
AAA: 5
AGG: 5
CGA: 5
CTG: 4
CTC: 4
GGA: 4
GAC: 4
AGT: 3
TTC: 3
TTA: 3
CTA: 3
ATC: 3
CAC: 3
GGT: 3
TGA: 2
GTT: 2
TCT: 2
ATG: 2
GCG: 2
GTG: 1
GTC: 1
TGG: 1
ACC: 1
TCA: 1
CCA: 1
TTG: 1
GAG: 1
CGG: 1
CGC: (0)
TGC: (0)
CAG: (0)
GGC: (0)
GGG: (0)
AAG: (0)
CCC: (0)
CCG: (0)
TCC: (0)
TCG: (0)
AGC: (0)
ACT: (0)
ACA: (0)
ACG: (0)
TAT: (0)
TAC: (0)
GTA: (0)
TAA: (0)
TAG: (0)
Total Codon Positions: 256
NON-CODONS (unique count: 15)
A,GG,AG,C,TT,CA,AA,GA,TC,CT,CC,GT,AT,AC,CC
51) Codon Usage Bias:
About: Lymphocytic choriomeningitis virus segment L, complete sequence (6680bp)
VERSION: NC_004291.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 2
TATCTC (Terminator 5'3' prime) count: 1
ATATTT (Promoter 3'5' prime) count: 3
ATAGAG (Terminator 3'5' prime) count: 2
CODONS & USE COUNT (most used to least used):
AGA: 178
AAT: 138
TGT: 123
AAC: 93
AGG: 90
GCA: 86
GCT: 80
GAT: 79
CAT: 68
CTT: 66
GGT: 54
GAC: 44
GCC: 44
CAA: 41
TTT: 36
CAC: 35
TTA: 31
ATC: 30
ATT: 30
TTG: 29
CTG: 28
CTA: 28
GAA: 25
CGA: 25
GAG: 24
AGT: 23
CTC: 22
AAG: 19
TCT: 17
TTC: 17
CAG: 16
CCT: 15
ATA: 15
GCG: 15
AAA: 14
GGG: 14
CGG: 13
ATG: 11
TGG: 9
ACT: 9
TCC: 9
TGA: 8
GTT: 7
GGA: 7
TAT: 6
TAC: 5
TCA: 5
CCA: 5
CGT: 5
TAA: 4
GTG: 4
ACA: 4
CCC: 4
TAG: 3
GTC: 3
ACC: 3
GTA: 2
CGC: (0)
TGC: (0)
GGC: (0)
CCG: (0)
TCG: (0)
AGC: (0)
ACG: (0)
Total Codon Positions: 1818
NON-CODONS (unique count: 19)
C,G,T,GC,GA,AC,TC,AA,CC,AT,TG,GT,CA,TA,TT,GG,CT,AG,CT
52) Codon Usage Bias:
About: Influenza B virus (B/Lee/1940) segment 5, complete sequence (1841bp)
VERSION: NC_002208.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 2
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 0
ATAGAG (Terminator 3'5' prime) count: 0
CODONS & USE COUNT (most used to least used):
AGA: 54
AAT: 46
GCA: 37
AGG: 26
AAC: 25
GCT: 23
CAA: 21
GAT: 21
GAC: 19
GCC: 15
TGT: 14
GAA: 13
CTT: 12
CAT: 12
GGT: 12
ATT: 11
CTA: 10
CGA: 10
ATG: 7
AAG: 6
CAC: 6
GGG: 6
CAG: 6
CGG: 6
TAT: 5
TTA: 5
CTC: 5
TGG: 4
ACC: 4
CCC: 4
TTT: 4
CTG: 4
CGT: 4
TAA: 3
GTC: 3
TAC: 3
TCC: 3
TCT: 3
CCT: 3
TTC: 3
AAA: 3
ATA: 3
ATC: 3
GTG: 2
ACA: 2
ACT: 2
AGT: 2
TTG: 2
GGA: 2
GCG: 2
TGA: 1
GTA: 1
GTT: 1
TCA: 1
CCA: 1
GAG: 1
TGC: 1
CGC: (0)
GGC: (0)
CCG: (0)
TCG: (0)
AGC: (0)
ACG: (0)
TAG: (0)
Total Codon Positions: 508
NON-CODONS (unique count: 18)
G,CA,GA,T,CT,AA,AG,CC,AC,TG,TT,GT,TA,TC,AT,GG,CG,TT,CT
53) Codon Usage Bias:
About: Rotavirus C segment 2, complete sequence (2736bp)
VERSION: NC_007546.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 3
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 3
ATAGAG (Terminator 3'5' prime) count: 1
CODONS & USE COUNT (most used to least used):
AAT: 105
AGA: 77
AAC: 48
ATT: 39
GCT: 36
CAT: 35
GAT: 34
GCA: 34
TTA: 25
TGT: 23
ATA: 21
AGG: 16
TTT: 14
CTT: 14
ATC: 14
CGT: 13
CAG: 12
AGT: 11
AAA: 11
GGT: 11
CTC: 10
GAC: 10
CGA: 10
GCC: 10
CAC: 9
GAA: 9
CAA: 9
CTA: 7
CGG: 7
TAT: 6
GTT: 5
ACA: 5
ACT: 5
TTC: 5
ATG: 5
TTG: 5
TAA: 4
GTG: 4
ACC: 4
TCA: 4
TGA: 3
GCG: 3
TAC: 2
TCT: 2
CCA: 2
CCT: 2
AAG: 2
CTG: 2
GGA: 2
TAG: 1
GTA: 1
TGG: 1
TCC: 1
CCC: 1
CGC: (0)
TGC: (0)
GAG: (0)
GGC: (0)
GGG: (0)
CCG: (0)
TCG: (0)
AGC: (0)
ACG: (0)
GTC: (0)
Total Codon Positions: 751
NON-CODONS (unique count: 20)
G,T,A,AA,GA,C,AT,AG,TT,AC,TC,CC,GT,TA,CT,CA,TG,GG,GC,G
54) Codon Usage Bias:
About: Human immunodeficiency virus 1, complete genome (9181bp)
VERSION: NC_001802.1
PROMOTER & TERMINATOR USE COUNT:
TATAAA (Promoter 5'3' prime) count: 9
TATCTC (Terminator 5'3' prime) count: 0
ATATTT (Promoter 3'5' prime) count: 2
ATAGAG (Terminator 3'5' prime) count: 7
CODONS & USE COUNT (most used to least used):
AGA: 295
AAT: 219
GCA: 184
AGG: 152
AAC: 117
GCT: 113
GCC: 100
TGT: 92
GAT: 71
GAC: 66
CAT: 65
AGT: 63
GGT: 54
ATT: 49
CAC: 49
CTT: 48
CAA: 46
AAA: 45
GAA: 43
CAG: 40
TTA: 38
ATC: 38
ATA: 37
TTT: 30
CTC: 30
CTG: 24
CTA: 24
GGG: 24
GGA: 23
ACA: 21
CGA: 21
GCG: 21
ATG: 20
GAG: 19
TGG: 18
AAG: 17
CCT: 14
ACC: 13
TTC: 13
TTG: 12
TAT: 11
CGG: 11
TAC: 10
TCT: 10
CCA: 10
CCC: 10
GTA: 9
ACT: 9
TAA: 8
TCA: 8
GTG: 7
GTT: 6
CGT: 6
TCC: 5
TGA: 4
TAG: 2
GGC: 2
GTC: 1
AGC: 1
TCG: 1
CCG: 1
CGC: (0)
TGC: (0)
ACG: (0)
Total Codon Positions: 2500
NON-CODONS (unique count: 19)
T,CC,A,TG,TC,TT,GT,TA,AC,CT,AA,GA,CG,AG,GG,CA,AT,GC,T,TC
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