This is an appendix to: Quantum Biology - 11
01) Codon Usage Bias:
About: Respiratory syncytial virus, complete genome (15191bp)
VERSION: U39661.1
CODONS & LOCATIONS:
GCT: 184,222,391,1143,1308,1347,1492,1553,1575,1680,1695,
1735,1762,1869,1952,1962,2121,2124,2184,2199,2268,
2282,2309,2360,2396,2697,2791,2831,2927,3264,3278,
3281,3389,3472,3535,3665,3914,3968,4363,4441,4451,
4744,4946,4957,5004,5203,5208,5399,5677,5698,5759,
5770,5851,5896,5916,6047,6088,6139,6160,6170,6263,
6694,6842,6878,7183,7269,7401,7619,7680,7762,7812,
8416,8495,8555,8813,8843,8863,8954,9360,9366,9547,
9566,9569,9578,9592,9694,9791,9923,10088,10409,10551,
10673,10832,10883,10955,10972,11111,11279,11489,11621,
11654,11675,11729,11830,11992,12179,12530,12636,12648,
12712,12956,13076,13126,13284,13547,13717,13903,14143,
14195,14246,14276,14393,14451,14543,14591,14892,14998
GCT count: 127
GCC: 295,338,406,616,796,906,954,1074,1755,1887,2010,2128,
2508,2575,2623,2852,3160,3168,3183,3340,3361,3484,
3506,3588,3794,3883,4121,4256,4318,4565,4830,4845,
4900,5093,5110,5261,5345,5357,5482,5583,5640,5950,
6076,6423,6865,7136,7258,7285,7665,7792,7867,7932,
8031,8137,8455,9294,9782,9857,9907,10048,10141,11022,
11410,11933,12286,12437,12483,12564,12642,13245,13335,
13729,13826,14284,14581
GCC count: 75
GCA: 48,103,106,165,216,228,256,269,539,599,837,851,893,
941,947,963,1045,1128,1150,1201,1222,1259,1285,1413,
1589,1632,1653,1656,1824,1846,1896,1901,1929,1970,
1974,2031,2064,2116,2134,2187,2193,2253,2334,2384,
2424,2744,2816,2900,2933,2966,3227,3320,3365,3467,
3476,3489,3531,3539,3572,3806,3866,3961,3980,4193,
4261,4308,4388,4468,4486,4504,4561,4647,4653,4681,
4773,4797,4827,4851,4878,4893,5036,5089,5176,5179,
5185,5188,5473,5576,5622,5659,5668,5680,5741,5746,
5753,5910,5922,5927,5935,6020,6070,6083,6105,6200,
6258,6269,6352,6374,6480,6523,6579,6667,6776,6809,
6839,6884,6901,7014,7022,7099,7141,7280,7292,7310,
7342,7366,7570,7595,7675,7733,7765,7858,7874,7985,
8035,8084,8330,8984,9058,9651,9698,9807,9834,10320,
10355,10360,10394,10490,10572,10586,10636,10698,10708,
10712,10961,10976,11012,11016,11065,11238,11300,11387,
11592,11705,11724,11756,11800,11867,12075,12171,12186,
12344,12365,12405,12478,12518,12576,12796,12904,13116,
13121,13253,13319,13379,13755,13876,13884,13899,13912,
14015,14033,14109,14204,14325,14329,14343,14457,14507,
14612,14675,14729,14751,14773
GCA count: 203
GCG: 3,13,28,1395,1629,2810,5566,6947,9375,11688,14050
GCG count: 11
CGT: 1440,1725,3244,4417,4640,4741,6846,6916,7150,8040,
8763,10025,10034,10514,11142,11629,12224,13307,14373,
14735,15189
CGT count: 21
CGC: (0)
CGA: 2731,3259,3310,3974,4454,5468,5507,5947,6642,6716,
6721,7158,7452,7582,7609,7737,8130,8280,8512,9131,
9634,9811,10189,10592,10798,11450,14074,14407,15159
CGA count: 29
CGG: 1218,1914,2834,3189,6942,7797,9530,10043,11095,11827,
11893,13626,13785
CGG count: 13
AGA: 55,95,132,413,583,586,661,675,682,698,721,739,775,
790,936,1014,1105,1114,1121,1181,1229,1301,1304,1356,
1365,1370,1389,1445,1460,1522,1526,1533,1559,1568,
1580,1665,1799,1839,1851,2027,2144,2151,2171,2213,
2243,2258,2264,2294,2306,2377,2380,2393,2410,2443,
2451,2458,2485,2491,2503,2550,2554,2588,2611,2614,
2656,2665,2686,2689,2710,2724,2747,2752,2846,2867,
2872,2881,2891,2918,2923,2936,2961,2971,2980,3007,
3111,3114,3199,3220,3301,3307,3382,3443,3461,3527,
3622,3725,3740,3748,3904,3922,3928,3997,4126,4151,
4242,4297,4448,4619,4627,4690,4697,4702,4889,4903,
4909,4936,5053,5220,5245,5284,5297,5351,5388,5426,
5601,5721,5776,5808,5847,5874,5880,5904,5953,5956,
6023,6034,6037,6111,6210,6228,6308,6316,6324,6440,
6475,6558,6637,6646,6831,6929,7017,7121,7124,7133,
7288,7407,7495,7534,7561,7631,7687,7708,7749,7777,
7782,7785,7815,7929,7946,7951,8026,8048,8081,8106,
8207,8229,8317,8545,8618,8635,8652,8710,8713,8751,
8767,8772,8799,8807,8810,8818,8869,8875,8880,8902,
8908,8938,9013,9039,9169,9245,9302,9371,9418,9466,
9472,9508,9511,9514,9524,9562,9582,9599,9619,9624,
9746,9769,9776,9851,9869,9902,9941,9994,9998,10130,
10165,10205,10208,10216,10229,10324,10328,10346,10376,
10398,10448,10462,10470,10480,10564,10727,10741,10756,
10778,10828,10912,10931,11043,11057,11132,11182,11206,
11212,11224,11252,11462,11465,11485,11542,11554,11563,
11570,11642,11667,11699,11776,11782,11809,11834,11871,
11925,11938,11947,11967,12013,12023,12092,12231,12271,
12299,12321,12325,12334,12373,12397,12432,12500,12536,
12586,12604,12664,12692,12720,12811,12909,12991,13015,
13024,13083,13150,13177,13216,13354,13396,13406,13426,
13510,13561,13597,13606,13647,13713,13742,13762,13807,
13925,13984,13999,14081,14093,14200,14336,14398,14419,
14561,14586,14599,14691,14707,14816,14824,14854
AGA count: 331
AGG: 356,1102,1226,1334,1361,1689,1692,1747,1859,1955,1996,
2163,2421,2566,2756,2785,2942,2949,3031,3826,3862,
4208,4672,5326,5417,5443,5825,5855,5968,6028,6057,
6098,6114,6334,6509,6512,6611,6615,6861,6965,6987,
7041,7313,7585,7827,7918,7990,8356,8527,8560,8695,
8961,9141,9234,9447,9880,9917,10018,10342,10366,10801,
10864,10942,11035,11191,11337,11659,11715,11975,11999,
12032,12086,12235,12381,12409,12751,12999,13108,13206,
13248,13273,13541,13669,13816,13951,14023,14029,14103,
14469,14500,14662,14932,15102,15105
AGG count: 94
AAT: 10,42,51,77,141,153,176,196,200,213,242,247,252,300,
303,306,319,324,335,351,371,379,402,410,420,428,433,
461,468,477,481,490,510,518,524,528,542,546,593,602,
606,610,643,705,708,757,764,825,857,866,875,887,919,
975,994,1002,1024,1031,1068,1081,1090,1097,1131,1139,
1164,1204,1248,1272,1295,1311,1318,1331,1382,1416,
1452,1463,1468,1505,1511,1537,1550,1562,1616,1640,
1648,1698,1701,1713,1718,1783,1828,1884,1933,1944,
1979,2005,2017,2086,2138,2166,2217,2286,2298,2319,
2328,2337,2367,2403,2416,2427,2482,2522,2546,2579,
2633,2681,2713,2717,2735,2769,2779,2788,2887,2905,
2912,2945,2996,3012,3035,3047,3083,3163,3171,3196,
3230,3288,3293,3331,3351,3392,3415,3428,3481,3492,
3509,3565,3594,3602,3675,3683,3709,3743,3767,3783,
3791,3803,3811,3873,3894,3953,4073,4099,4165,4173,
4179,4196,4199,4212,4221,4227,4265,4273,4280,4294,
4311,4333,4351,4354,4366,4372,4410,4460,4477,4591,
4598,4601,4610,4635,4650,4719,4758,4765,4778,4805,
4823,4952,4965,5078,5136,5139,5193,5409,5421,5593,
5609,5625,5631,5643,5656,5818,5830,5839,5861,5944,
5977,5992,6001,6007,6129,6178,6338,6349,6391,6398,
6411,6415,6433,6450,6460,6468,6504,6536,6555,6664,
6713,6738,6769,6800,6813,6893,6907,6913,6921,6961,
6991,7009,7050,7053,7057,7091,7117,7154,7163,7174,
7180,7190,7201,7221,7239,7254,7336,7356,7362,7372,
7386,7438,7523,7528,7557,7573,7588,7598,7605,7624,
7651,7661,7752,7840,7853,7924,7936,7960,7999,8095,
8143,8146,8163,8191,8222,8246,8261,8294,8299,8339,
8380,8407,8413,8448,8467,8483,8489,8498,8552,8576,
8594,8611,8624,8632,8645,8660,8677,8701,8707,8786,
8803,8821,8852,8886,8894,8932,8966,8970,8993,9019,
9042,9046,9055,9079,9092,9105,9173,9185,9195,9206,
9210,9266,9270,9287,9308,9319,9353,9383,9386,9443,
9460,9493,9500,9519,9539,9572,9587,9638,9643,9647,
9661,9684,9688,9707,9719,9729,9763,9803,9819,9890,
9893,9920,10069,10079,10106,10133,10157,10176,10182,
10200,10239,10244,10248,10274,10298,10369,10387,10402,
10425,10474,10495,10506,10511,10520,10526,10535,10575,
10580,10647,10690,10693,10751,10869,10876,10888,10892,
10901,10905,10909,10982,10992,11028,11083,11255,11270,
11275,11294,11312,11316,11366,11375,11405,11576,11596,
11618,11625,11680,11692,11696,11740,11789,11804,11875,
11882,11901,12037,12069,12078,12110,12148,12159,12190,
12201,12206,12283,12296,12331,12348,12387,12412,12444,
12510,12523,12545,12572,12652,12669,12677,12716,12730,
12817,12831,12840,12854,12867,12884,12890,12895,12929,
12950,13055,13073,13142,13170,13174,13233,13313,13323,
13421,13432,13445,13455,13460,13467,13481,13496,13514,
13550,13557,13565,13568,13578,13610,13622,13632,13637,
13655,13676,13687,13690,13709,13725,13735,13748,13772,
13801,13820,13830,13864,13880,13922,13931,13960,13993,
14006,14039,14150,14180,14280,14308,14340,14363,14367,
14377,14385,14415,14423,14497,14510,14528,14540,14547,
14570,14615,14665,14669,14738,14790,14798,14810,14837,
14880,14903,14926,14957,14961,14964,14968,14974,14988,
15020,15036,15043,15051,15059,15077,15085,15108,15112,
15118,15124,15129
AAT count: 556
AAC: 19,23,33,82,179,209,332,383,397,445,458,534,555,624,
636,717,732,779,817,830,880,1008,1034,1037,1049,1176,
1186,1264,1430,1433,1481,1496,1499,1515,1643,1758,
1984,2052,2055,2203,2206,2229,2275,2342,2387,2390,
2477,2497,2515,2527,2542,2570,2592,2646,2659,2668,
2678,2740,3001,3017,3020,3095,3102,3108,3119,3123,
3127,3131,3144,3149,3178,3238,3248,3252,3398,3411,
3455,3550,3583,3610,3637,3644,3649,3691,3715,3755,
3772,3775,3857,3949,3987,4002,4039,4080,4095,4104,
4109,4217,4237,4251,4269,4291,4345,4348,4397,4401,
4427,4432,4492,4498,4517,4520,4539,4548,4607,4614,
4632,4656,4668,4678,4811,4854,4871,4874,4916,4922,
4976,4988,5009,5012,5030,5045,5061,5066,5069,5072,
5083,5104,5107,5115,5119,5127,5131,5163,5198,5229,
5236,5249,5272,5276,5288,5305,5312,5320,5360,5367,
5378,5382,5406,5447,5459,5501,5521,5538,5543,5547,
5597,5613,5628,5652,5710,5733,5736,5802,5844,5870,
5901,5941,5960,5989,6012,6124,6154,6195,6220,6233,
6253,6277,6285,6302,6313,6360,6387,6429,6457,6575,
6600,6604,6622,6633,6699,6742,6750,6793,6828,6888,
7046,7129,7212,7319,7351,7411,7444,7455,7539,7693,
7705,7845,7850,7877,7889,7894,7913,7996,8003,8007,
8052,8061,8088,8098,8112,8194,8252,8255,8264,8286,
8349,8400,8432,8439,8445,8509,8606,8655,8665,8856,
8891,8912,8926,9006,9025,9028,9110,9113,9121,9149,
9237,9259,9335,9344,9402,9432,9505,9551,9554,9710,
9716,9899,9949,9965,9987,10235,10262,10289,10292,10332,
10415,10502,10532,10600,10632,10748,10761,10815,10923,
10948,11038,11080,11088,11150,11286,11309,11346,11356,
11392,11438,11528,11547,11587,11612,11632,11735,11760,
11908,11912,11944,11981,11986,12020,12053,12166,12212,
12220,12246,12280,12310,12318,12377,12424,12470,12583,
12626,12689,12735,12777,12792,12859,12981,13036,13290,
13349,13366,13387,13449,13502,13528,13533,13574,13600,
13618,13758,13835,13839,14064,14162,14210,14213,14250,
14290,14297,14428,14440,14653,14685,14757,14780,14821,
14831,14888,14899,14907,14916,14948,15008,15062,15073,
15149,15154
AAC count: 368
GAT: 62,98,122,156,233,374,453,499,504,666,669,753,784,
925,988,1167,1239,1254,1392,1399,1425,1602,1610,1613,
1662,1685,1862,1873,1907,2181,2225,2301,2558,2630,
2675,2720,2762,2837,2849,2878,3038,3050,3062,3065,
3072,3368,3451,3521,3545,4029,4342,4384,4482,4802,
5142,5865,6065,6327,6418,6436,6650,6671,6805,7087,
7096,7209,7230,7427,7726,7900,8071,8149,8323,8327,
8366,8369,8471,8597,8828,8942,9166,9189,9328,9378,
9477,9654,9658,9788,10001,10006,10061,10072,10082,
10111,10196,10232,10253,10405,10457,10523,10619,10628,
10730,10770,10847,10964,11060,11146,11162,11165,11372,
11381,11432,11474,11534,11567,11638,11645,11779,11792,
11971,12026,12353,12557,12599,12611,12755,12761,12784,
12873,12967,12973,13029,13040,13136,13413,13417,13463,
13738,13792,13796,14114,14168,14273,14402,14551,14594,
14609,14629,14920,15097,15162
GAT count: 152
GAC: 150,192,417,464,580,619,631,646,724,1108,1593,2081,
2249,2820,2908,2915,3044,3314,3432,3656,3850,3854,
4710,5588,6661,6733,6784,6819,6973,7066,7265,7774,
7903,7921,8159,8308,8462,8743,8758,8898,9256,9277,
9397,9704,9756,9814,10117,10315,10822,10898,11139,
11200,11327,11606,11670,12152,12826,12917,12960,13640,
13658,13682,14154,14185,14896,15175
GAC count: 66
TGT: 145,169,260,266,272,311,343,423,689,1192,1281,1288,
1339,1351,1406,1477,1486,1605,1623,1774,1802,1808,
1876,1967,1991,2074,2105,2222,2237,2473,2563,2988,
3024,3087,3345,3503,3513,3560,3575,3606,3671,3736,
3834,3943,4087,4143,4233,4406,4509,4660,4969,5021,
5158,5168,5214,5692,5796,5836,6053,6060,6189,6206,
6239,6249,6288,6345,6357,6369,6383,6497,6528,6552,
6568,6595,6628,6658,6703,6730,6834,6870,6954,6978,
6984,7005,7035,7076,7244,7377,7550,7577,7636,7683,
7700,7800,7861,7955,7965,8018,8115,8171,8204,8217,
8394,8502,8530,8549,9050,9218,9253,9314,9338,9422,
9486,9605,9741,9828,9846,9886,9928,9981,10009,10265,
10303,10339,10350,10607,10613,10642,10684,10738,10808,
11098,11306,11397,11415,11442,11503,11559,11839,12017,
12082,12121,12141,12360,12466,12506,12629,12683,12801,
12835,12880,13047,13095,13133,13160,13200,13277,13345,
13402,13664,13701,13767,13789,13936,13955,14009,14266,
14270,14287,14332,14351,14446,14514,14642,14679,14695,
14698,14803,14883,14940,15013,15141
TGT count: 182
TGC: (0)
CAA: 36,138,280,348,440,658,840,861,884,959,981,1135,1157,
1215,1489,1544,2013,2059,2210,2290,2500,2585,2608,
2643,2653,2727,3175,3213,3568,3597,3696,3787,3887,
4135,4245,4305,4489,4536,4664,4751,4859,4897,5017,
5024,5057,5075,5101,5258,5266,5291,5317,5323,5342,
5375,5434,5439,5479,5490,5606,5649,5707,5997,6132,
6216,6608,6758,6824,7103,7690,7908,8102,8225,8249,
8258,8336,8452,8621,8833,8935,8989,9003,9022,9102,
9135,9241,9779,10154,10277,10379,10583,10811,10861,
10958,11170,11651,11749,11898,12302,12313,12623,12769,
12788,12814,13220,14537,14566,14682
CAA count: 107
CAG: 793,1586,1936,2102,2234,3075,3615,3733,3846,4020,5550,
5703,6674,7298,8669,8729,8916,9125,9627,10336,10926,
12489,12493,12657,13180,13329,14055,14257,14358,14520
CAG count: 30
GAA: 159,787,848,1078,1118,1457,1473,1721,1770,1779,2351,
2765,2897,2957,2984,3524,3634,3680,3764,3958,4277,
5154,5242,6118,6763,7981,9283,9773,10172,10412,10436,
10486,11122,11846,11921,12050,12089,12274,12988,13010,
13060,13192,13375,14177,14477,14741
GAA count: 46
GAG: 116,1420,2314,4024,5635,6182,7323,7768,7808,7818,9724,
9841,10037,10192,11006,11074,11176,12043,13130,14132,
14302
GAG count: 21
GGT: 91,813,929,1327,1571,1671,1818,1842,1893,1922,2022,
2035,2154,2840,2857,2861,3337,4090,5782,5786,6653,
6969,7186,7389,7612,7627,8579,9075,9087,9155,9215,
9450,9469,9701,9766,9854,9945,10306,10454,10662,10790,
10793,10895,11262,11423,11426,11429,12099,12227,12253,
12257,12420,12596,13296,13342,14174,14223,14472,14793,
14851,15133
GGT count: 61
GGC: 12901
GGC count: 1
GGA: 368,1071,3028,3235,3911,3994,4118,6572,7759,8486,10939,
12394,14322,14732
GGA count: 14
GGG: 45,596,1125,1565,1659,1918,2141,2331,3224,4190,4644,
5619,7567,8860,12357,13020,14036
GGG count: 17
CAT: 112,204,237,514,560,627,678,686,729,760,800,806,922,
972,998,1042,1059,1195,1211,1268,1314,1376,1437,1812,
2043,2068,2347,2372,2433,2467,2530,2662,2703,2799,
2826,2875,2976,3091,3139,3270,3354,3358,3438,3448,
3499,3653,3661,3706,3730,3814,3841,3877,3991,4017,
4033,4052,4067,4070,4113,4130,4140,4147,4187,4202,
4284,4288,4339,4369,4378,4381,4424,4464,4544,4558,
4570,4574,4604,4722,4733,4738,4783,4790,4835,4841,
4883,4981,4997,5279,5363,5527,5533,5557,5919,6407,
6501,6584,6780,6854,6875,6924,6932,6995,7070,7171,
7197,7206,7250,7394,7404,7415,7422,7449,7461,7472,
7483,7615,7639,7648,7672,7968,7973,8014,8055,8066,
8091,8134,8185,8267,8289,8303,8397,8424,8427,8476,
8569,8628,8641,8690,8733,8929,8975,9062,9069,9072,
9083,9152,9176,9230,9324,9348,9457,9608,9612,10075,
10150,10169,10540,10558,10667,10701,10733,10784,10825,
10936,10952,11297,11509,11531,11601,11817,12009,12126,
12249,12261,12391,12725,12742,12926,12937,13043,13051,
13103,13237,13280,13361,13370,13438,13492,13520,13586,
13698,13811,13859,13887,13916,14020,14069,14117,14188,
14219,14390,14575,14578,14718,14768,14840,14862,14954,
14994,15091
CAT count: 210
CAC: 71,329,387,551,640,651,672,692,713,736,966,1019,1052,
1171,1208,1298,1322,1373,1791,1959,2094,2158,2436,
2795,3057,3099,3135,3274,3324,3421,3553,3628,3759,
3778,3799,3964,4059,4064,4076,4224,4329,4473,4526,
4555,4685,4693,4816,4865,4913,4931,4984,4991,4994,
5042,5096,5122,5148,5252,5255,5339,5348,5372,5395,
5402,5414,5430,5454,5518,5685,5715,5930,5984,6150,
6365,6542,6563,6689,7194,7295,7302,7477,7884,7940,
8077,8233,8277,8377,8782,8996,9440,9559,10095,10146,
10561,10687,10839,11482,11498,11770,11962,12129,12241,
12267,12453,12551,12748,13593,13650,13846,13890,14929,
15002
CAC count: 112
ATT: 58,109,263,276,834,1236,1292,1449,1518,1619,1947,2048,
2111,2240,2671,2700,2759,3829,3939,4300,4420,4623,
4727,4730,4838,5570,5573,5662,5724,5811,5877,5907,
6015,6280,6402,6726,6753,6789,6950,7001,7147,7167,
7339,7487,7547,7655,7978,8043,8333,8360,8389,8436,
8480,8520,8534,8572,8724,8848,8921,9118,9163,9200,
9248,9290,9406,9436,9482,9616,9667,9883,10213,10224,
10390,10418,10477,10483,10610,10654,10676,10843,10968,
11068,11103,11209,11233,11332,11378,11419,11520,11635,
11743,11795,11951,12040,12062,12340,12448,12474,12569,
12580,12608,12619,12695,12698,12745,12764,12844,12898,
12921,12963,13004,13165,13188,13210,13384,13525,13544,
13721,13777,13896,13919,13939,14044,14047,14106,14129,
14165,14216,14229,14434,14524,14606,14618,14721,14982,
15016,15030,15146,15165
ATT count: 139
ATC: 485,531,916,1402,1529,1786,2271,2278,2413,2470,2518,
2692,3004,3152,3418,3983,4182,4230,4551,4787,4939,
5039,5211,5385,5476,5504,5671,5729,5762,5821,6073,
6093,6147,6174,6273,6493,6625,6678,6850,6957,7316,
7397,7746,7830,8011,8074,8109,8166,8283,8352,8505,
9392,9595,9631,9972,10015,10284,10309,10603,11053,
11185,11820,11890,12106,12137,12155,12913,13229,13705,
14159,14557,14783,14857,14865,14871
ATC count: 75
ATA: 187,361,472,745,769,869,978,1085,1111,1343,1583,1626,
1750,1821,2147,2177,2650,2843,3156,3206,3241,3401,
3686,3718,3899,3935,4391,4413,4748,4770,4925,5223,
5497,5789,5981,6224,6380,6546,7225,7234,7275,7508,
7711,7823,8270,8372,8383,8601,8746,8945,9097,9221,
9425,9863,10091,10137,10161,10258,10704,10722,10774,
10835,10916,11049,11091,11156,11266,11400,11446,11492,
11523,11766,11915,11996,12113,12144,12162,12176,12427,
12614,12632,12704,12977,13032,13080,13392,13435,13473,
13536,13582,13613,14012,14078,14312,14711,14726,14754,
14845,14944,15024,15047,15138
ATA count: 102
CTT: 88,495,507,577,750,896,933,1146,1674,1831,1925,2077,
2246,2638,3298,3435,3517,3819,3908,4005,4011,4056,
4324,4359,4435,4501,4531,4761,5173,5485,5674,6043,
6192,6377,6519,6684,7381,7433,7592,7714,7742,8320,
8538,8674,8721,8738,8792,8948,8978,9034,9274,9680,
9713,9912,9937,9969,9975,10064,10429,10442,10745,10988,
11046,11159,11350,11359,11369,11513,11584,11857,11885,
11928,11941,12096,12102,12401,12416,12701,12847,12933,
13069,13146,13241,13301,13310,13338,13476,13486,13854,
13869,13908,13988,14226,14261,14485,14492,14635,14639,
14868,14977,15179
CTT count: 101
CTC: 394,437,991,1056,1243,1386,1597,2099,2595,2939,2991,
3641,3823,4084,4161,4375,4714,4808,4961,5301,5308,
5451,5462,5465,5524,5530,5689,6489,6590,6772,6857,
7030,7083,8311,8404,8542,9066,9180,9410,9489,10098,
10568,10650,10680,10873,11469,11746,11823,12738,12863,
12876,13154,13507
CTC count: 53
CTA: 701,854,902,1541,1707,1740,1766,1834,2039,2439,2511,
2619,2823,3053,3386,3404,3722,4014,4045,4049,4155,
5001,5335,5392,5514,5773,5792,6142,6245,6319,6938,
7062,7217,7306,7418,7501,7721,8153,8214,8345,8648,
8682,8718,8778,8839,9000,9262,9428,9454,9962,10022,
10030,10101,10466,10554,10850,11129,11458,11685,11786,
11814,11904,12056,12132,12264,12369,12540,12561,12708,
12996,13157,13197,13203,13590,13782,13851,13947,14253,
14649,14714,14828,15081
CTA count: 82
CTG: 872,1027,2364,3752,4315,4394,4706,4794,4972,5239,7441,
10625,10997,11342,11664,11702,11712,11918,12066,12870,
13554,14099
CTG count: 22
TTA: 74,135,566,803,950,1093,1278,1635,1795,1879,1911,1939,
2000,2864,3078,3210,3327,3371,3495,3618,3668,4321,
4755,4819,5765,5972,6185,6341,6486,7346,7480,7512,
7542,7643,7697,8211,8566,8775,8789,8883,8951,8958,
9159,9226,9297,9305,9497,9535,9795,9823,9932,9952,
9990,10421,10670,10979,11243,11282,11303,11537,11709,
11842,11852,12292,12486,12645,12672,12773,12806,12941,
12953,12984,13111,13259,13357,13489,13629,13694,13843,
14123,14138,14443,14465,14482,14786,14807,14910,15067,
15115
TTA count: 89
TTG: 219,695,944,1161,1855,7262,7601,7658,7771,7805,9203,
9341,11573,11720,12117,12639
TTG count: 16
AAA: 6,39,125,173,590,1379,1409,1547,1556,1710,2190,2322,
2325,2454,2884,2952,3192,3216,3304,3699,3880,3925,
4176,4595,5217,5232,5269,5294,5354,5561,5579,5884,
6031,6305,6443,6706,6910,7025,7038,7359,7553,7729,
7993,8022,8058,8140,8524,8591,8704,8795,8872,8981,
9009,9145,9356,9463,9527,9575,10052,10055,10764,11032,
11290,11353,11609,11978,12029,12277,12440,12589,13223,
13270,13304,13442,13643,13673,13981,14437,14621,14656,
14659,14913,14971,14985,15040
AAA count: 85
AAG: 65,225,449,1153,1275,1987,2354,2602,2626,2773,3702,
3931,4168,4512,5329,5756,5814,5833,6135,6157,6203,
6483,6515,7112,7491,7717,7755,8197,8563,9670,9674,
9798,10085,10498,10547,11227,11579,11752,12463,12780,
12820,12850,14462,14875
AAG count: 44
ATG: 365,821,890,2706,2930,3334,6881,7870,8458,9280,9414,
9785,10114,10596,10787,10819,12047,12384,13139,13409,
14777
ATG count: 21
TTT: 742,1805,1815,1865,2357,2605,3977,4008,4042,5145,5151,
5695,6040,6050,6681,6747,6935,7144,7430,7505,8342,
9838,9860,10012,10040,10123,10185,10312,10589,10657,
11197,11362,11455,11989,12217,12306,12554,12823,13007,
13065,13099,13213,13332,13470,13893,14135,14243,14410,
14626,14745,14951,15054,15094,15170,15182
TTT count: 55
TTC: 899,1005,1064,1189,2089,3068,3255,3285,3869,6298,6464,
6710,7498,8182,9677,10373,10383,11477,11550,13928,
14813,15185
TTC count: 22
CCT: 810,2407,3317,3919,4523,4928,5033,5646,6102,6108,6213,
7272,7369,7881,8156,8410,8582,9978,10127,10295,10433,
10719,11615,11648,12515,12686,13603,14003,14126,14192,
14355,14504
CCT count: 32
CCC: 1743,2447,2539,3425,3557,4919,4942,6587,6796,7080,
7669,9760,10715,11107,11435
CCC count: 15
CCA: 655,1198,2400,3267,4445,5086,5226,5965,7943,8421,11732,
12503,12527,15121
CCA count: 14
CCG: (0)
TCT: 1668,2174,3580,3625,5494,5616,7458,8492,9664,11179,
11230,12337,12887,12970,13399,14603
TCT count: 16
TCC: 85,969,3348,6454,6619,6904,9192,14517,14991
TCC count: 9
TCA: 613,1508,2430,3458,4906,5050,5750,6167,8314,8442,10945,
12328,13287,13326,14748
TCA count: 15
TCG: 4848
TCG count: 1
AGT: 128,285,314,843,1233,1904,2108,2462,2494,2599,2803,
2806,2813,3041,3464,3838,3890,4495,4587,4862,5554,
5893,6079,6236,6394,6446,6471,6531,7897,8119,8201,
8516,8615,8685,8825,8836,9332,9542,10270,10280,10439,
10544,10616,10919,10985,11125,11173,11516,11849,11878,
12059,12182,12289,12497,12661,12944,13184,13256,13873,
13943,13964,14059,14096,14120,14293,14346,14380,14488,
14533,14702,14936
AGT count: 71
AGC: (0)
ACT: 2261,2782,2894,3203,4868,5779,7564,8188,8236,8274,
8363,9031,10221,10880,11153,11763,12947,13517,14554,
14672,15005
ACT count: 21
ACC: 3105,3186,3712,4675,5665,5938,6004,6331,7531,10363,
12238,13745,14207,14632,14646
ACC count: 15
ACA: 1011,1677,3971,4036,4336,4886,6898,8638,10445,11025,
11203,11384,13452,13752,13823,14233
ACA count: 16
ACG: (0)
TGG: 4205,4949,6549,7326,9984,10639,10805,11136
TGG count: 8
TAT: 119,521,985,1251,1890,2071,2196,2488,2582,3542,3631,
5182,5799,5805,6426,6816,6998,7247,7789,8386,8755,
9128,9866,10451,10781,11009,11071,11188,11259,12533,
12548,12593,13293,13499,13661,13804,14171,14431,14834,
14848,15088
TAT count: 41
TAC: 16,68,3946,5332,5511,6242,6539,9016,9896,10517,10529,
11773,13571,13732,14147
TAC count: 15
GTT: 5913,7864,9311,9389,11495,11506,12209,12758,13226,
13679,15027
GTT count: 11
GTC: 1704,3395,4248,4457,5027,6981
GTC count: 6
GTA: 162,4158,6163,6266,6766,7177,9602,10622,12680,13316,
14370
GTA count: 11
GTG: 772,3407,6121,9138,10058,10767,15070
GTG count: 7
TAA: 3591,5858,8866,9691,9831,10179,11077,12072,13429,13996,
14305,14688,14923,15033
TAA count: 14
TAG: 563,2131,7073,9363,10120,11019,11194,14454
TAG count: 8
TGA: 1502,2776,4438,5718,8698,8905,14026
TGA count: 7
02) Codon Usage Bias:
About: Influenza C virus (C/Ann Arbor/1/50) PB2 gene for polymerase 2, complete cds (2365bp)
VERSION: NC_006307.2
CODONS & LOCATIONS:
GCT: 73,82,208,222,232,556,565,709,772,936,997,1041,1171,
1252,1457,1504,1566,1664,1731,1743,1831,1876,1989,
2009,2056,2293,2357,2363
GCT count: 28
GCC: 65,262,316,486,696,717,871,1035,1165,1297,1405,1536,
1708,1960,2019,2249,2281
GCC count: 17
GCA: 2,8,43,79,181,188,191,310,528,569,622,652,742,781,
823,847,850,856,878,1108,1134,1181,1259,1271,1303,
1318,1486,1585,1612,1684,1780,2000,2140,2182,2226,
2296
GCA count: 36
GCG: 2089,2258,2274,2303
GCG count: 4
CGT: 122,2135,2244
CGT count: 3
CGC: (0)
CGA: 466,546,960,1331,1401,2004,2172
CGA count: 7
CGG: 680,705,1065
CGG count: 3
AGA: 58,69,128,155,169,175,215,228,246,273,279,282,366,
378,394,403,408,412,420,435,442,460,469,472,492,499,
505,513,522,549,582,603,610,642,663,688,720,724,753,
768,820,913,921,927,931,942,1049,1080,1105,1137,1140,
1152,1192,1200,1233,1237,1241,1275,1281,1293,1342,
1389,1392,1431,1483,1526,1539,1548,1603,1623,1693,
1700,1784,1815,1843,1852,1870,1879,2115,2148,2179,
2197,2202,2236,2263,2315,2327,2333
AGA count: 88
AGG: 12,47,99,145,149,295,415,747,750,805,832,1002,1005,
1014,1098,1187,1215,1218,1221,1338,1420,1443,1501,
1521,1599,1643,1655,1719,1746,1752,1787,1857,1937,
1970,1983,2095,2151,2253,2290
AGG count: 39
AAT: 21,39,50,87,131,194,201,204,219,237,256,337,361,423,
426,516,531,572,586,606,637,671,676,731,793,811,853,
864,992,1053,1115,1121,1212,1224,1228,1308,1314,1347,
1358,1372,1385,1396,1425,1438,1449,1461,1467,1493,
1512,1517,1554,1576,1617,1734,1759,1776,1807,1823,
1827,1839,1849,1883,1928,1974,2029,2035,2070,2085,
2187,2208,2311,2348
AAT count: 72
AAC: 102,112,211,253,358,625,629,668,756,775,868,881,924,
957,981,1020,1311,1434,1647,1670,1704,1713,1749,1967,
2032,2120,2193,2277,2341
AAC count: 29
GAT: 90,298,372,457,735,762,786,799,814,964,1206,1321,1365,
1368,1377,1471,1573,1591,1678,1696,1762,1932,2212,
2219
GAT count: 24
GAC: 36,93,135,347,478,537,1244,1531,1636,1756,1910,2059,
2128
GAC count: 13
TGT: 105,285,303,343,352,489,542,659,699,829,841,988,1101,
1256,1362,1428,1608,1659,1796,1889,2013,2077,2109,
2160,2164,2307,2319,2336
TGT count: 28
TGC: (0)
CAA: 54,290,375,463,496,600,614,802,905,1381,1479,1544,
1737,1897,1964,2271,2287,2300
CAA count: 18
CAG: 1085,1416
CAG count: 2
GAA: 5,432,553,976,1184,1582,1726,2167,2322
GAA count: 9
GAG: 889,1128,2024,2049
GAG count: 4
GGT: 592,885,1060,1474,2190
GGT count: 5
GGC: (0)
GGA: 18,225,270,400,1454
GGA count: 5
GGG: 1464
GGG count: 1
CAT: 140,449,739,1010,1038,1352,1595,1919,1924,2080,2124
CAT count: 11
CAC: 117,164,250,276,655,971,1196,1509,1558
CAC count: 9
ATT: 15,33,332,577,916,984,1143,1176,1286,1410,1489,1650,
1689,1765,1790,1793,1865,1913,1916,1955,2040,2145
ATT count: 22
ATC: 108,158,1026,1093,1355,1673
ATC count: 6
ATA: 712,949,1089,1155,1413,2073,2092
ATA count: 7
CTT: 26,161,265,307,320,439,525,562,693,844,946,952,1496,
1561,1579,1627,1769,1773,1801,1836,1941,1947,1952,
1995,2045,2102,2132,2241,2268,2354
CTT count: 30
CTC: 482,632,1045,1569
CTC count: 4
CTA: 61,242,595,1146,1249,1631,1892,1904,2066
CTA count: 9
CTG: 509,1125,1681,1907
CTG count: 4
TTA: 446,1076,1289,1324,1810,1901,2156
TTA count: 7
TTG: 502,759,1031,1118,1979,2222
TTG count: 6
AAA: 152,683,808,835,874,1017,1071,1446,1551,1639,1716,
2229,2345
AAA count: 13
AAG: 76,900,1159,1740,1986,2053
AAG count: 6
ATG: 172,184,727,817,910,1203
ATG count: 6
TTT: 340,397,619,702,1588,1620,1862,1992,2205
TTT count: 9
TTC: 29,789,1056,1667
TTC count: 4
CCT: 559,1300,2351
CCT count: 3
CCC: 198,1846,2175
CCC count: 3
CCA: (0)
CCG: (0)
TCT: 391,968,1023
TCT count: 3
TCC: (0)
TCA: 125,1162,2284
TCA count: 3
TCG: (0)
AGT: 96,369,381,453,645,648,859,1068,1327,1334,1818,2062,
2106,2232
AGT count: 14
AGC: 313
AGC count: 1
ACT: 778,2360
ACT count: 2
ACC: 1168,1944
ACC count: 2
ACA: 765
ACA count: 1
ACG: (0)
TGG: 178,1149,1278,2112,2216
TGG count: 5
TAT: 589,1723,1804
TAT count: 3
TAC: 1112,1209,2099
TAC count: 3
GTT: 475,796,838,1873
GTT count: 4
GTC: 355
GTC count: 1
GTA: 259,826
GTA count: 2
GTG: 429,534
GTG count: 2
TAA: 519,2330
TAA count: 2
TAG: 1886
TAG count: 1
TGA: 939,1131,2016
TGA count: 3
03) Codon Usage Bias:
About: Influenza A virus (A/Puerto Rico/8/1934(H1N1)) segment 2, complete sequence (2341bp)
VERSION: NC_002021.1
CODONS & LOCATIONS:
GCT: 73,301,387,439,510,715,729,1042,1140,1206,1366,1437,
1548,1654,1783,1791,1999,2099,2173,2280,2307
GCT count: 21
GCC: 60,116,237,243,271,398,435,454,485,493,837,982,1011,
1235,1405,1531,1663,1706,1808,1853,1922,1962,1978,
2188,2328
GCC count: 25
GCA: 8,12,64,80,181,211,216,295,369,442,448,685,742,748,
762,799,848,862,871,1100,1132,1144,1148,1225,1253,
1271,1381,1457,1541,1574,1648,1767,1898,1951,1966,
2005,2102,2129,2200,2289
GCA count: 40
GCG: 2,1069,1283,1585,1890
GCG count: 5
CGT: 341,1516,1697,1774
CGT count: 4
CGC: (0)
CGA: 38,201,227,353,376,912,954,1014,1201,1359,1413,1426,
1578,1702,1735,1800,2038,2191,2214
CGA count: 19
CGG: 99,592,736,970,1803,2151,2203
CGG count: 7
AGA: 102,174,184,246,249,279,381,404,427,465,475,516,552,
555,581,587,598,614,629,653,682,711,719,739,791,815,
854,857,887,936,962,1003,1024,1072,1097,1103,1117,
1180,1184,1187,1310,1322,1460,1480,1683,1738,1754,
1828,1929,2032,2062,2076,2140,2143,2185,2231,2235,
2238,2249,2258,2277,2284
AGA count: 62
AGG: 126,132,157,311,359,527,639,646,667,723,756,769,802,
831,883,905,1083,1395,1417,1485,1690,1877,1886,2095,
2224
AGG count: 25
AAT: 24,34,70,253,314,424,462,481,496,534,543,558,604,618,
636,678,702,765,827,874,898,947,958,1006,1027,1047,
1050,1065,1125,1137,1168,1197,1242,1261,1297,1349,
1378,1387,1446,1450,1496,1534,1621,1633,1659,1725,
1749,1813,1831,1859,1865,1932,1937,1941,1948,2035,
2050,2085,2117,2294,2301,2325
AAT count: 62
AAC: 15,84,129,154,192,196,204,223,257,276,337,372,430,
457,570,624,633,650,661,697,818,824,940,1060,1112,
1176,1477,1618,1630,1731,1757,1770,1822,1909,1945,
1984,2010,2081
AAC count: 38
GAT: 28,145,232,564,621,656,759,891,987,1153,1171,1245,
1248,1313,1339,1371,1398,1626,1636,1869,1873,1956,
1959,1996,2022,2154,2197,2209
GAT count: 28
GAC: 123,189,390,401,412,417,601,609,690,705,894,924,999,
1221,1304,1588,1717,1787
GAC count: 18
TGT: 150,283,363,470,531,777,786,811,879,974,1091,1256,
1265,1275,1374,1432,1527,1563,1608,1673,1760,1917,
2263,2310,2332
TGT count: 25
TGC: (0)
CAA: 67,260,384,394,708,1402,1502,1614,1680,1779,2028,2054,
2059,2092
CAA count: 14
CAG: 166,1554,1669,2147,2160
CAG count: 5
GAA: 292,334,349,506,546,584,726,951,1079,1158,1192,1846,
2113,2320
GAA count: 14
GAG: 499,538,845,1409,1593,1601,1990,2066,2170
GAG count: 9
GGT: 265,325,773,1019,1334,1342,1523,1642,1794,1972,2166,
2178
GGT count: 12
GGC: (0)
GGA: 208,1545,1571,1764,2221
GGA count: 5
GGG: 561,1862
GGG count: 2
CAT: 18,141,163,319,513,574,927,992,1229,1290,1390,1441,
1473,1490,1611,1677,1742,1839,1913,1969,2043,2135,
2253,2271,2317
CAT count: 25
CAC: 138,489,567,794,909,930,1317,1721,1904,2014,2244,2268
CAC count: 12
ATT: 288,328,346,745,1039,1278,1597,1825,1880,2105,2109,
2194,2206
ATT count: 13
ATC: 674,965,2157,2217
ATC count: 4
ATA: 76,95,135,780,808,995,1088,1818,1925,2227
ATA count: 10
CTT: 42,46,51,92,110,307,519,523,783,916,920,1209,1300,
1328,1345,1469,1639,1666,2046,2071,2121,2314
CTT count: 22
CTC: 107,171,220,902,1056,1121,1287,1353,1797,1834
CTC count: 10
CTA: 408,1033,1325,1512,2337
CTA count: 5
CTG: 503,694,1075,1238,1294,1568,2019
CTG count: 7
TTA: 421,1422,1604,1686,1894,2304
TTA count: 6
TTG: 21,451,821,842,868,979,1094,1493,1559,1745
TTG count: 10
AAA: 5,54,177,549,643,664,732,1307,1463,1981
AAA count: 10
AAG: 865
AAG count: 1
ATG: 119,298,851,1108,1453,1520,1987
ATG count: 7
TTT: 87,331,577,1362,1506,1509
TTT count: 6
TTC: 304,1537,2181
TTC count: 3
CCT: 322,1129,1843
CCT count: 3
CCC: 752,1384,2025,2124
CCC count: 4
CCA: 944,1645,1975
CCA count: 3
CCG: (0)
TCT: 1850
TCT count: 1
TCC: 1551
TCC count: 1
TCA: 366,478,1499,1582
TCA count: 4
TCG: (0)
AGT: 57,670,805,1036,1466,2297
AGT count: 6
AGC: (0)
ACT: 240,1331
ACT count: 2
ACC: 1429,1883,1901
ACC count: 3
ACA: 113,160,445,1651,1694,1728
ACA count: 6
ACG: (0)
TGG: 356,933
TGG count: 2
TAT: 268,1993,2163
TAT count: 3
TAC: 2089
TAC count: 1
GTT: 834,1030,1053,2002,2132,2241
GTT count: 6
GTC: 31
GTC count: 1
GTA: (0)
GTG: 595
GTG count: 1
TAA: 1268,1856
TAA count: 2
TAG: (0)
TGA: 1232,1356,2274
TGA count: 3
04) Codon Usage Bias:
About: Hepatitis E virus, complete genome (7176bp)
VERSION: NC_001434.1
CODONS & LOCATIONS:
GCT: 28,46,58,61,94,165,225,231,257,284,317,320,382,385,
414,421,424,440,458,532,558,565,630,682,713,782,920,
943,1010,1013,1046,1085,1105,1114,1171,1210,1242,1297,
1310,1314,1325,1415,1431,1531,1540,1593,1618,1630,
1644,1843,1846,1851,1862,1870,1878,1992,2025,2074,
2131,2260,2281,2290,2343,2363,2381,2385,2409,2451,
2494,2566,2601,2608,2627,2644,2751,2755,2836,2882,
2951,3026,3031,3034,3117,3120,3123,3204,3263,3285,
3358,3391,3439,3478,3505,3570,3619,3694,3739,3747,
3775,3798,3918,3927,3957,4053,4088,4104,4261,4273,
4287,4342,4435,4467,4475,4668,4699,4702,4714,4718,
4797,4814,4827,4872,4882,4905,4918,4992,4999,5005,
5017,5046,5100,5143,5149,5170,5258,5324,5336,5373,
5378,5408,5435,5449,5462,5594,5608,5648,5657,5690,
5700,5710,5723,5733,5898,5953,5967,6016,6142,6155,
6158,6165,6229,6248,6259,6293,6304,6355,6377,6521,
6532,6538,6551,6579,6661,6742,6754,6815,6829,6845,
6860,6890,6917,6940,6949,7032,7037,7055,7060,7113,
7137,7163
GCT count: 190
GCC: 1,10,73,82,108,161,176,244,254,260,274,329,334,364,
378,392,472,487,526,542,568,582,597,775,785,811,819,
831,884,952,985,1003,1019,1075,1093,1126,1129,1145,
1190,1229,1259,1277,1321,1366,1373,1436,1474,1490,
1504,1582,1603,1640,1651,1760,1769,1789,1807,1810,
1814,1834,1837,1873,1900,1924,1942,1954,1978,1985,
2033,2041,2146,2151,2175,2194,2197,2215,2277,2296,
2302,2308,2326,2336,2339,2377,2438,2497,2524,2527,
2547,2560,2611,2633,2682,2704,2723,2758,2773,2781,
2789,2854,2867,2872,2878,2931,2965,3010,3017,3020,
3052,3055,3074,3094,3139,3142,3181,3199,3214,3222,
3232,3266,3354,3397,3400,3466,3485,3511,3520,3530,
3566,3635,3644,3676,3697,3705,3713,3724,3752,3763,
3786,3791,3809,3822,3892,3895,3902,3913,3935,3944,
3947,3967,3997,4012,4019,4063,4079,4093,4186,4202,
4216,4237,4247,4282,4315,4348,4424,4458,4513,4560,
4597,4639,4642,4691,4724,4780,4787,4819,4823,4847,
4853,4877,5040,5105,5127,5134,5164,5173,5179,5185,
5194,5202,5205,5208,5269,5309,5330,5352,5360,5393,
5400,5405,5411,5441,5446,5468,5482,5488,5510,5520,
5564,5591,5604,5669,5706,5738,5758,5833,5843,5871,
5933,6008,6029,6101,6111,6137,6216,6300,6318,6332,
6343,6491,6501,6554,6591,6647,6653,6693,6739,6785,
6842,6882,6894,6926,6974,6980,7002,7011,7014,7023,
7068,7119
GCC count: 250
GCA: 35,54,67,126,153,403,431,605,614,644,808,1040,1064,
1163,1206,1445,1465,1577,1636,1721,1799,2058,2096,
2111,2233,2331,2461,2482,2647,2669,2818,2827,2907,
2923,2942,3045,3132,3195,3249,3298,3366,3388,3430,
3472,3559,3584,3595,3665,3879,3908,3950,4208,4351,
4354,4360,4461,4509,4565,4632,4673,4765,4869,4901,
4988,5012,5220,5276,5524,5628,5838,5851,5958,6048,
6096,6125,6382,6398,6406,6466,6643,6712,6770,6850,
6944
GCA count: 84
GCG: 70,88,207,339,351,374,396,408,482,555,619,648,765,
1152,1200,1387,1399,1481,1680,1741,1891,1907,1931,
1973,2212,2266,2323,2419,2444,2511,2519,2712,2900,
3003,3023,3135,3271,3545,3575,3626,3662,3772,3986,
4121,4339,4498,4530,4625,4793,4860,4864,5117,5215,
5223,5226,5235,5327,5383,5456,5505,5921,6076,6120,
6219,6264,6339,6632,6639,6747,6911,7154
GCG count: 71
CGT: 247,623,651,662,756,967,1036,1393,1566,1569,1633,1724,
1727,2045,2269,2412,2862,2970,2976,2982,2995,3098,
3147,3207,3292,3338,3497,3600,3852,3886,4000,4023,
4125,4258,4329,4684,4747,4806,4809,4945,4971,5345,
5417,5420,5560,5687,5751,5781,5785,5819,5882,5974,
6086,6104,6116,6288,6322,6325,6431,6832,6898
CGT count: 61
CGC: 241,3527,5176,6498,6977,7160
CGC count: 6
CGA: 180,444,696,858,871,875,932,1500,1524,1674,1686,2154,
2396,2514,2769,2841,2887,2990,3167,3186,3225,3481,
3502,3591,3899,4050,4071,4107,4517,4661,4751,4857,
4910,5049,5314,5363,5778,5808,5848,6034,6273,6415,
6473,6477,6518,6585,6664,6991
CGA count: 48
CGG: 411,447,741,815,850,887,981,1342,1677,1704,1737,1888,
1918,1998,2055,2120,2237,2299,2357,2617,2637,2661,
2688,2727,2821,3325,3334,3408,3419,4172,4554,5074,
5188,5255,5569,5678,5914,6004,6013,6061,6205,6421,
6656,6854,7005,7094
CGG count: 46
AGA: 134,476,724,744,993,1214,1250,1622,1694,1749,1764,
1796,2091,2597,2621,2761,2859,3058,3173,3314,3450,
3539,3716,3757,3828,3870,4148,4152,4178,4226,4268,
4376,4406,4428,4544,4688,4835,4838,4922,5423,5653,
5763,5907,6210,6277,6370,6723,6837,7074
AGA count: 49
AGG: 587,668,734,772,1052,1100,1181,1306,1381,1439,1470,
1487,1511,1661,1670,1856,1934,1963,2021,2123,2160,
2191,2369,2473,2578,2678,2810,3068,3434,3578,3743,
3806,4028,4076,4082,4132,4205,4295,4357,4492,4520,
4533,4650,4695,4736,5622,5890,5925,5928,6174,6390,
6444,6675,6954,7029,7080
AGG count: 56
AAT: 91,150,220,267,288,292,304,388,1023,1078,1535,1708,
1756,1774,1969,2002,2077,2425,2550,2553,2716,2776,
2830,3007,3604,3630,3679,3863,3964,4043,4159,4163,
4411,4579,5059,5064,5081,5085,5633,5644,5663,5695,
5795,5800,5990,6065,6197,6335,6374,6426,6524,6626,
6800
AAT count: 53
AAC: 76,145,193,298,463,691,706,912,1090,1224,1460,1589,
1713,2313,2416,2538,2585,2590,2793,2805,3371,3403,
3607,3803,3855,3867,4035,4117,4547,4591,4978,5088,
5296,5300,5355,5452,5531,5539,5576,5720,5803,5885,
5978,6071,6242,6455,6459,6806,6825,7090
AAC count: 50
GAT: 129,295,343,505,520,633,720,1185,1264,1357,1519,1683,
1786,2128,2491,2508,2572,2685,2731,2936,3088,3274,
3288,3309,3475,3844,3979,4312,4321,4396,4455,4503,
4618,4654,4657,4710,4741,4891,4933,4983,5261,5492,
5813,6128,6223,6283,6386,6452,6527,6686
GAT count: 50
GAC: 427,552,640,673,964,997,1026,1336,1495,1549,1609,1647,
1752,1882,2431,2664,2701,2784,2848,3163,3255,3453,
3556,3673,3685,4324,4381,4967,5008,5055,5252,5340,
5387,5474,5498,5789,6023,6133,6251,6346,6410,6470,
6563,6608,6616,6670,6821,6965,6995
GAC count: 49
TGT: 168,210,238,509,536,593,654,699,792,837,867,974,977,
1059,1071,1303,1346,1378,1450,1626,1690,1731,1866,
1948,2061,2086,2401,2455,2505,2738,2814,2875,2904,
2928,2979,3081,3252,3280,3341,3377,3516,3651,3768,
3841,3849,3876,3883,3930,4039,4046,4114,4156,4234,
4299,4370,4432,4450,4478,4612,4760,4770,4773,4914,
4925,4929,4938,5069,5092,5157,5317,5683,5854,5902,
5947,6202,6237,6349,6367,6511,6601,6613,6733,7051,
7116,7133
TGT count: 85
TGC: 710,1859,5124,5517,6937
TGC count: 5
CAA: 1000,1406,1600,2470,2594,2962,3953,5862,6720
CAA count: 9
CAG: 16,1168,1236,1282,1300,1655,1821,1981,2320,2694,2914,
3219,3385,3413,3493,3563,3640,3733,4583,4996,5033,
5390,5396,5672,6566,6594,7043,7064
CAG count: 28
GAA: 1081,1425,5037,7170
GAA count: 4
GAG: 7,529,1288,1360,2068,2392,2605,2734,2998,3091,3427,
4060,4221,4390,4447,4678,4887,5029,5867,6041,6557,
6767,7097
GAG count: 23
GGT: 99,183,271,309,356,547,657,685,768,861,892,1350,1514,
1559,2009,2117,2272,2765,2985,3078,3160,3245,3349,
3622,4068,4192,4253,4443,4635,4756,4776,4956,5112,
5240,5249,5581,5713,5729,5917,5942,6079,6296,6622,
6689,6773,6789,6887,7085
GGT count: 48
GGC: 2287,3014,3071,3295,5895
GGC count: 5
GGA: 228,1197,1203,2709,2973,4541
GGA count: 6
GGG: 4175,4309,4844,5333,5438
GGG count: 5
CAT: 13,196,201,217,502,515,608,637,748,759,917,940,955,
1119,1140,1330,2014,2081,2458,2534,3084,3129,3259,
3424,3459,3489,3508,3549,3552,3647,3730,4182,4189,
4365,4470,4975,5020,5108,5291,5471,5639,5746,5963,
6169,6363,6495,6961,6983,7147
CAT count: 49
CAC: 39,121,277,313,512,574,729,804,824,924,1122,1827,1885,
1913,1938,1995,2099,2106,2201,2317,2434,2557,2654,
2719,2799,2892,3039,3048,3063,3112,3151,3237,3318,
3381,3447,3534,3834,3837,3924,3973,4137,4167,4401,
4483,4605,4609,5025,5320,5367,5431,5767,5770,5773,
5876,5970,5994,6055,6107,6145,6148,6151,6480,6547,
6571,6679,6703,6706,6811,6868,6874,6877,6932
CAC count: 72
ATT: 22,49,142,494,778,906,1390,1543,2373,2956,3463,3858,
3938,4015,4264,4438,4841,5138,5288,5822,6183,6280,
6395,6440,6447,6717,6863,6905,7109,7141
ATT count: 30
ATC: 214,958,1176,1270,1554,2169,2240,3170,3655,3668,4006,
4276,4628,5279,5513,5536,5542,5741,5858,6401
ATC count: 20
ATA: 359,1959,2182,2531,2673,4489,5985,6000,6360,6957,7102
ATA count: 11
CTT: 85,139,434,627,789,798,842,879,936,1108,1135,1245,
1333,1606,1699,1716,1781,1817,2029,2037,2114,2157,
2243,2346,2487,2501,2624,2743,2845,3103,3154,3157,
3189,3616,3690,3710,4099,4111,4140,4143,4230,4240,
4332,4419,4486,4570,5095,5272,5305,5549,5556,5585,
5600,5982,5997,6038,6245,6483,6505,6582,6619,6683,
6698,6727,6730,6760,6795,6987,7019,7125,7128
CTT count: 71
CTC: 115,158,325,490,497,571,577,752,900,970,1033,1159,
1317,1585,1612,1665,1777,2219,2252,2256,3240,3331,
3588,3659,3814,3990,3994,4292,4335,4551,4897,4941,
5130,5153,5265,5618,5911,5938,6082,6091,6179,6313,
6328,6515,6543,6604,6757,6901
CTC count: 48
CTA: 64,368,677,827,834,854,864,1233,1293,1456,1563,1802,
1830,2138,2186,2249,2352,2366,3305,3444,3781,3960,
4573,5284,5427,5612,6189,6269,6310,6598,6777,6780,
7047
CTA count: 33
CTG: 32,189,455,479,602,717,1097,1574,1928,2018,2406,2441,
2747,2833,3345,3794,4279,4587,4802,4832,4850,4964,
5199,5245,5755,6667
CTG count: 26
TTA: 104,234,561,737,1029,1043,1055,1220,1421,1596,2103,
2165,2204,2466,2918,3719,4031,4305,4601,4646,4950,
5825,6186,6574,6871,6923,7071
TTA count: 27
TTG: 263,1239,1285,2064,2581,3229,3362,3523,3736,4373,4732,
4790,6020,6535,6763
TTG count: 15
AAA: 4195,4728,7173
AAA count: 3
AAG: 25,928,1396,3394
AAG count: 4
ATG: 4,665,1508,2360,3889,4594,5792,6462
ATG count: 8
TTT: 19,111,171,186,451,466,1006,1353,1411,1745,1895,1910,
1945,1966,1988,2005,2048,2135,2389,2697,3610,4003,
4211,4318,4384,4393,4414,4537,4894,6026,7040,7106
TTT count: 32
TTC: 347,399,702,1453,2178,3613,3700,3727,3983,4243,4621,
4744,4959,5160,5230,5349,6044,6508,6998,7150,7157
TTC count: 21
CCT: 301,795,903,949,990,1068,1370,2230,2284,2569,2658,
3109,3760,3819,4250,4527,4707,5052,5553,5597,6052,
6256,6418,6736,6971,7167
CCT count: 26
CCC: 280,371,417,469,846,896,1016,1273,1527,1615,1903,2051,
2207,2224,2227,2246,2478,2541,2630,2895,2948,3042,
3106,3177,3211,4783,5478,5502,5546,5615,5716,6058,
6162,6234,6486,6929,7122
CCC count: 37
CCA: 204,1149,1339,2143,3126,3825,5121,5830,6709
CCA count: 9
CCG: 251,1256,2263,2305,2544,2939,4009,5465,6588,6636
CCG count: 10
TCT: 79,118,1194,1403,1824,1840,1951,2422,2796,3976,4387,
4495,4506,5660,7144
TCT count: 15
TCC: 539,590,909,2691,3970,4129,6908,7026
TCC count: 8
TCA: 1921,2851,5191,5414
TCA count: 4
TCG: 1363,1478,2071,5370,6213
TCG count: 5
AGT: 1217,1253,1442,1546,1792,2945,3322,3542,4056,4523,
4665,5043,5485,6436,6818,7008
AGT count: 16
AGC: 3905,6226
AGC count: 2
ACT: 43,437,801,1384,3831,5636,6194
ACT count: 7
ACC: 611,1484,2293,2641,2651,2959,3302,5182,5703,6068,6792
ACC count: 11
ACA: 1049,1111,2824,5573
ACA count: 4
ACG: 3469,3941,4085,5625
ACG count: 4
TGG: 961,2448,3581,4199,4576,4953,5078,5212
TGG count: 8
TAT: 688,1267,2575,2802,3873,4615,5167,5528,5666,5879,5950,
6560,6803
TAT count: 13
TAC: 1132,1156,2349,2614,2911,3456,4681,5588,5675,6968
TAC count: 10
GTT: 1418,2428,3682,3778,4302,5002,5146,5495,5726,5816,
6307,6650,6857,6914,6920
GTT count: 15
GTC: 523,946,2563,3328,3921,4096,5459
GTC count: 7
GTA: 3277,6629,6750
GTA count: 3
GTG: 1428,4345,4464,4721
GTG count: 4
TAA: 1658,6352
TAA count: 2
TAG: 3374
TAG count: 1
TGA: 762,1734,2172,3192,3416,4557,7077
TGA count: 7
05) Codon Usage Bias:
About: La Crosse virus segment L, complete genome (6980bp)
VERSION: NC_004108.1
CODONS & LOCATIONS:
GCT: 92,181,721,749,854,1039,1130,1354,1418,1523,1658,1667,
1685,1703,1750,1838,1846,2019,2138,2142,2150,2239,
2318,2623,2746,2756,2960,3152,3193,3257,3286,3400,
3437,3490,3531,3878,3988,4076,4196,4453,4667,4715,
4979,4997,5145,5351,5417,5524,5552,5573,5637,5770,
5927,6070,6148,6187,6249,6443,6465,6492,6755,6916
GCT count: 62
GCC: 125,155,250,654,703,874,992,1213,1232,1378,1422,1477,
1863,1905,1974,2011,2589,2715,2761,2842,2913,3037,
3216,3293,3376,3569,3707,3726,3851,3862,3896,3905,
4609,4746,4891,4931,5304,5312,5330,5862,6475
GCC count: 41
GCA: 57,107,116,186,278,363,475,608,632,642,836,871,972,
1019,1059,1152,1167,1172,1189,1252,1326,1336,1403,
1464,1549,1576,1639,1724,1740,1753,1792,1797,2015,
2052,2072,2338,2360,2472,2486,2626,2659,2667,2681,
2728,2733,2978,2993,3048,3067,3112,3137,3146,3155,
3204,3209,3236,3348,3416,3536,3686,3731,3762,3819,
3913,3935,3950,3997,4028,4146,4165,4280,4364,4368,
4428,4571,4823,4872,4946,5081,5236,5320,5323,5341,
5384,5425,5469,5611,5711,5760,5777,5782,5829,5920,
5981,6083,6098,6219,6326,6398,6500,6945,6971
GCA count: 102
GCG: 715,1088,1317,1944,2167,2385,2512,3798,4317,5538
GCG count: 10
CGT: 445,449,2695,2922,2944,3122,3523,5621,5977,6002
CGT count: 10
CGC: (0)
CGA: 136,253,354,412,547,1588,2875,3089,3100,3130,3636,
3884,4219,4523,4887,5196,5504,6076,6154,6295,6342
CGA count: 21
CGG: 577,3586,3618,4158,4849,4862,4989,5096,5659,5686,6067
CGG count: 11
AGA: 30,73,158,176,202,229,259,274,295,334,416,433,454,
491,499,589,645,730,762,791,804,808,817,882,888,918,
928,933,937,963,1084,1123,1144,1175,1210,1279,1290,
1344,1357,1366,1390,1440,1446,1449,1480,1519,1531,
1563,1568,1719,1759,1765,1835,1849,1855,1866,1989,
2008,2076,2097,2123,2160,2180,2227,2334,2364,2374,
2391,2409,2436,2475,2498,2519,2524,2543,2609,2614,
2620,2640,2643,2653,2675,2701,2742,2773,2818,2836,
2916,2937,2950,2985,2998,3002,3076,3082,3117,3168,
3178,3222,3298,3325,3329,3364,3379,3423,3480,3565,
3583,3657,3679,3694,3702,3744,3769,3871,3900,4054,
4072,4172,4206,4231,4247,4276,4284,4311,4325,4349,
4409,4458,4489,4498,4546,4563,4585,4590,4618,4664,
4672,4711,4721,4750,4894,4901,4943,5000,5020,5031,
5044,5047,5085,5119,5129,5167,5175,5218,5254,5260,
5289,5398,5437,5490,5531,5546,5560,5589,5669,5689,
5692,5742,5849,5853,5857,5880,5917,5939,6014,6022,
6141,6181,6262,6283,6316,6368,6373,6377,6415,6419,
6429,6439,6459,6478,6496,6553,6582,6650,6674,6703,
6730,6744,6775,6783,6787,6796,6841,6869,6930,6963
AGA count: 207
AGG: 95,110,129,209,342,401,468,897,1003,1066,1102,1652,
1783,1859,2061,2218,2277,2323,2406,2531,2546,2599,
2750,2801,2824,2928,3057,3160,3213,3261,3318,3496,
3651,3859,3994,4037,4041,4215,4331,4376,4404,4483,
4538,4634,4677,4693,4733,4865,4974,5063,5089,5139,
5411,5463,5729,5773,5906,5909,5933,5985,6056,6127,
6145,6212,6255,6392,6697,6819,6823,6830,6884,6900,
6967
AGG count: 73
AAT: 34,50,61,84,101,151,197,212,235,299,317,384,430,436,
514,536,540,558,573,660,687,694,746,756,770,787,795,
831,878,910,940,948,1007,1013,1016,1095,1108,1192,
1195,1206,1222,1229,1265,1268,1299,1310,1351,1384,
1406,1484,1496,1500,1513,1526,1544,1610,1629,1670,
1676,1814,1870,1925,1955,2079,2128,2135,2293,2315,
2423,2452,2528,2537,2596,2647,2671,2689,2753,2765,
2857,2860,2906,2965,2989,3009,3014,3025,3072,3085,
3127,3173,3184,3229,3233,3249,3384,3395,3433,3449,
3453,3458,3464,3485,3500,3556,3643,3665,3673,3734,
3758,3811,4004,4012,4034,4061,4087,4110,4118,4149,
4192,4235,4255,4353,4380,4437,4509,4529,4558,4575,
4615,4641,4729,4760,4777,4792,4799,4843,4904,4911,
4915,4958,4961,4993,5039,5053,5160,5202,5243,5248,
5317,5327,5345,5367,5371,5434,5442,5485,5501,5603,
5641,5645,5653,5666,5674,5680,5683,5700,5715,5766,
5793,5801,5812,5895,5899,5912,5948,5953,6032,6035,
6088,6112,6136,6165,6174,6197,6206,6215,6240,6350,
6395,6405,6482,6514,6519,6533,6558,6577,6624,6638,
6659,6678,6686,6719,6747,6836,6880,6911,6921
AAT count: 207
AAC: 23,81,268,373,397,482,555,669,776,966,998,1029,1075,
1199,1218,1226,1248,1329,1426,1437,1534,1634,1643,
1673,1714,1769,1778,1897,1900,1917,1930,2005,2033,
2175,2209,2242,2269,2287,2388,2399,2433,2444,2504,
2516,2534,2554,2557,2566,2637,2684,2706,2785,3506,
3574,3602,3626,3631,3640,3754,3788,3801,3832,3983,
4187,4228,4360,4461,4680,4702,4756,4816,4826,5112,
5212,5215,5286,5472,5614,5650,5656,5677,5696,5734,
5749,5818,5842,5902,5956,6191,6308,6337,6424,6529,
6734,6764,6778,6807,6873,6941
AAC count: 99
GAT: 113,164,215,242,488,581,584,765,861,1111,1115,1276,
1361,1397,1432,1506,1603,1922,1939,2026,2147,2183,
2198,2354,2458,2798,2864,2869,3020,3028,3044,3239,
3359,3370,3428,3475,3623,3668,3723,3822,3845,3964,
4016,4090,4104,4132,4223,4298,4516,4658,4763,4810,
4813,4982,5003,5099,5122,5431,5456,5570,5606,5990,
6010,6038,6169,6203,6226,6244,6275,6412,6593,6614,
6664,6667,6760,6811,6848,6937
GAT count: 78
GAC: 65,143,380,404,617,904,959,1271,1400,1541,1706,1887,
2119,2156,2163,2204,2489,2603,2698,2833,3103,3404,
3445,3715,3967,3976,4007,4289,4342,4477,4637,4685,
4736,4766,4802,4967,5125,5387,5480,5510,5555,5630,
5704,5725,5787,5996,6299,6385,6653,6700,6727
GAC count: 51
TGT: 6,119,139,226,321,349,367,460,736,1155,1237,1371,1410,
1455,1580,1621,1662,1729,1787,1808,1873,1890,1977,
1993,2056,2103,2110,2170,2266,2344,2426,2469,2845,
2969,2973,3005,3060,3243,3265,3345,3540,3544,3710,
3751,3775,3792,3838,3848,3920,3942,4066,4083,4140,
4413,4440,4470,4513,4554,4596,4740,4839,4875,4880,
5026,5155,5225,5295,5360,5720,5805,5872,5966,6291,
6522,6572,6600,6960
TGT count: 77
TGC: 5068
TGC count: 1
CAA: 20,739,801,828,945,1044,1055,1282,1306,1333,1374,1381,
1459,1510,1516,1552,1986,2094,2213,2574,2580,2593,
2839,2881,2925,3108,3407,3516,4314,4534,4543,4772,
4859,4884,5093,5199,5549,5563,5809,5999,6237,6363,
6739,6925
CAA count: 44
CAG: 38,2107,2439,2631,3468,3928,4098,4179,4261,4393,5271,
5446,5826,5867,5961,6454,6546
CAG count: 17
GAA: 359,569,601,1186,1474,1606,2396,2617,2720,2957,3143,
3188,3662,3691,3739,4031,4168,4199,4238,4495,5017,
5056,5078,5578,5763,5798,6323,6526,6814
GAA count: 29
GAG: 392,697,718,1136,2662,2810,3134,3253,4175,4425,4466,
4852,5150,5357,6536,6861
GAG count: 16
GGT: 173,520,614,639,651,781,900,913,922,1261,1470,1818,
2253,2261,2350,2415,2656,2872,3041,3097,3842,3917,
4307,4432,4628,5265,5300,5496,5593,6115,6258,6279,
6320,6488,6540,6587
GGT count: 36
GGC: (0)
GGA: 523,666,989,1762,3064,3226,4212,4486,6908
GGA count: 9
GGG: 1245,3939,4115,4328,5239,5993,6634,6827,6897,6933
GGG count: 10
CAT: 42,161,222,264,271,284,331,611,676,956,977,995,1033,
1179,1182,1429,1647,1800,1828,2023,2037,2304,2330,
2347,2462,2898,3289,3355,3527,3606,3614,3747,3780,
3891,3946,3959,4080,4162,4321,4604,4612,4655,4789,
4832,4919,4922,5012,5188,5205,5233,5378,5391,5395,
5403,5515,5520,5585,5598,5885,5891,6120,6332,6380,
6450,6469,6510,6566,6605,6609,6682,6714,6724
CAT count: 72
CAC: 47,622,1081,1881,1969,2100,2501,2507,3198,3315,3511,
3924,4357,4444,5035,5171,5209,5229,5276,5624,6101,
6596,6646,6711,6802,6974
CAC count: 26
ATT: 98,148,168,287,387,425,471,479,592,598,813,907,1036,
1118,1133,1147,1303,1339,1387,1572,1693,1774,1912,
1949,2222,2272,2283,2310,2371,2478,2561,2569,2736,
2794,2815,2892,2941,3140,3279,3334,3367,3388,3391,
3559,3577,3595,3697,3718,3784,3829,4020,4057,4069,
4301,4337,4386,4449,4519,4579,4690,4705,4726,4769,
4782,4820,4897,5348,5541,5832,5835,6007,6059,6079,
6357,6401,6563,6752,6799,6844
ATT count: 79
ATC: 15,69,78,303,409,733,1072,1413,1585,1613,1618,1831,
1982,1999,2194,2782,3031,3305,3835,4046,4631,4970,
5136,5407,5617,5930,6027,6229,6472
ATC count: 29
ATA: 53,132,205,245,307,325,339,376,798,867,983,1322,1347,
1490,1537,1655,1688,1709,1737,1745,1841,1964,2067,
2115,2249,2296,2402,2769,2778,2806,2953,3163,3337,
3654,3814,3855,3887,3908,3953,3979,4123,4152,4503,
4835,4846,4950,5102,5307,5707,5745,5753,5821,5838,
5845,5875,5942,6209,6329,6353,6388,6569,6707
ATA count: 62
CTT: 88,193,503,532,550,626,724,1024,1051,1098,1393,1591,
1681,1698,2088,2299,2447,2493,2586,2650,3094,3340,
3805,4126,4129,4250,4389,4416,4621,4785,4796,5107,
5185,6018,6050,6158,6194,6223,6346,6485
CTT count: 40
CTC: 346,563,951,1594,1599,3308,3970,4600,5192,6177,6793
CTC count: 11
CTA: 510,969,1160,1934,2327,2357,2367,2418,2483,2550,3246,
3352,3441,3591,3932,4050,4293,4652,4743,4806,5163,
5282,5334,6303,6621,6642,6768,6876
CTA count: 28
CTG: 648,657,711,759,851,1493,1884,3283,4422,5535,5739,
6162,6949
CTG count: 13
TTA: 26,419,441,495,690,891,1078,1241,1257,1803,2634,2678,
3149,3520,3865,3875,4203,4373,4907,4934,5006,5466,
5476,5662,5790,5973,6105,6312,6549,6630,6692,6857,
6865
TTA count: 33
TTG: 239,1295,1503,2724,2982,3053,3201,4101,4940,5627,6123,
6435
TTG count: 12
AAA: 839,1063,1105,1163,1202,2132,2789,2884,2909,2919,3181,
3321,3410,3562,3766,4135,4696,4955,5050,5116,5179,
5251,6062,6091,6094
AAA count: 25
AAG: 463,1127,1285,2245,2709,4397,4549,5581
AAG count: 8
ATG: 753,885,1140,1467,1811,1952,2030,2739,4304,4868,5493,
5633,5924,6462,6590,6656
ATG count: 16
TTT: 543,663,864,980,1487,1734,1893,1958,2002,2082,2307,
2455,2540,2606,2829,2901,3268,3682,5132,5142,5221,
5354,5381,5420,5527,6184,6232,6287,6432,6671,6790,
6894,6904
TTT count: 33
TTC: 743,1091,1313,1876,2888,3471,3503,3648,3808,4272,4624,
5363,6446
TTC count: 13
CCT: 12,595,636,2258,2466,3017,3302,3826,4025,4346,4856,
4964,6151
CCT count: 13
CCC: 291,457,673,1626,2085,4155,4419,4567,4926,4985,6131
CCC count: 11
CCA: 281,2341,2430,2878,3493,5815,6543
CCA count: 7
CCG: (0)
TCT: 485,1961,1996,3973,4334,5888,6047
TCT count: 7
TCC: 6618
TCC count: 1
TCA: 925,2895,3461,4001,5414,6053
TCA count: 6
TCG: (0)
AGT: 1,189,256,422,517,604,706,857,1010,1047,2280,2583,
3598,3610,3881,3956,4094,4183,4474,4661,4699,5059,
5182,5756,6505,6689,6771,6833,6852
AGT count: 29
AGC: 2041
AGC count: 1
ACT: 104,773,1909,2064,3373,3580,4209,4258,4753,5507,6360,
6409,6978
ACT count: 13
ACC: 9,507,3312,3420,3991,4401,5375,5936
ACC count: 8
ACA: 629,2091,2290,3079,4829,5268
ACA count: 6
ACG: 3795
ACG count: 1
TGG: 986,2947,4107,4506
TGG count: 4
TAT: 232,328,370,566,700,1069,1452,2153,2201,2412,2712,
3676,4383,4492,4526,4582,4593,4718,5292,5567,6200
TAT count: 21
TAC: 219,4708,5279,5945
TAC count: 4
GTT: 2577,2692,3413,3772,4937,5009,5023,5428,6627
GTT count: 9
GTC: (0)
GTA: 122,1443,5969,6108
GTA count: 4
GTG: 894,5337,5459,6252
GTG count: 4
TAA: 784,1756,1852,2821,3219,4480,5257,6265
TAA count: 8
TAG: (0)
TGA: 727,3034,3868,4143,6073
TGA count: 5
06) Codon Usage Bias:
About: Influenza B virus (B/Lee/1940) segment 2, complete sequence (2313bp)
VERSION: NC_002205.1
CODONS & LOCATIONS:
GCT: 10,33,178,247,356,453,624,699,707,790,840,844,943,
1383,1581,1662,1687,1768,1800,1917,1923,2090,2236,
2309
GCT count: 24
GCC: 52,154,315,388,398,413,468,643,660,904,925,1136,1171,
1280,1546,1857,1872,1899,2176,2202,2302
GCC count: 21
GCA: 30,199,286,289,485,520,616,667,673,682,794,823,856,
901,946,1115,1208,1276,1331,1375,1411,1576,1729,1738,
1748,1789,1795,1889,2015,2077,2086,2105
GCA count: 32
GCG: 481,1109,2012
GCG count: 3
CGT: 5,1554,1592,2205
CGT count: 4
CGC: (0)
CGA: 205,351,593,646,1273,1312,1950
CGA count: 7
CGG: 59,77,1044,1050,1080,1994,2165
CGG count: 7
AGA: 67,71,81,100,118,128,142,252,367,371,376,422,430,436,
474,516,532,567,574,629,633,649,693,727,769,800,808,
811,837,849,863,873,940,964,970,976,985,998,1012,1032,
1064,1083,1086,1102,1144,1191,1224,1249,1254,1482,
1566,1607,1632,1707,1710,1760,1763,1792,1813,1821,
1896,2052,2056,2062,2127,2155,2169,2227,2267,2275
AGA count: 70
AGG: 40,188,224,258,267,321,333,344,461,587,652,714,744,
747,915,951,1008,1178,1181,1231,1242,1327,1361,1431,
1522,1885,1929,1932,1935,1957,1962,2034,2045,2144,
2196,2221,2259
AGG count: 37
AAT: 15,46,86,96,104,109,166,202,218,228,244,273,282,304,
385,402,465,492,495,501,525,536,581,696,721,732,751,
764,776,780,804,816,859,890,936,960,1002,1024,1041,
1056,1071,1091,1112,1140,1165,1197,1200,1261,1270,
1324,1349,1364,1396,1400,1404,1408,1450,1504,1515,
1539,1549,1562,1584,1617,1655,1669,1721,1752,1809,
1841,1850,1880,1907,1942,1984,1998,2019,2040,2059,
2067,2074,2108,2245
AAT count: 83
AAC: 20,91,233,240,261,405,448,557,600,755,759,829,881,
992,1053,1154,1283,1304,1443,1479,1497,1623,1626,1645,
1677,1805,1833,2004,2136,2147,2162,2179
AAC count: 32
GAT: 193,325,546,561,597,783,852,870,910,919,1016,1027,
1035,1122,1161,1257,1345,1355,1392,1455,1459,1462,
1587,1597,1726,1784,2022,2119,2262
GAT count: 29
GAC: 43,183,382,931,1336,1417,1816,1837,2113,2270,2280
GAC count: 11
TGT: 62,158,277,417,489,609,786,867,895,928,1098,1105,1235,
1298,1437,1610,1715,1853,1864,1973,2097
TGT count: 21
TGC: (0)
CAA: 74,967,973,1020,1060,1309,1573,1629,1642,1877,1990,
2133
CAA count: 12
CAG: 1690,1774,1779
CAG count: 3
GAA: 49,124,147,340,478,577,590,718,1128,1150,1188,1428,
1531,1683,1703,1735,1744,1830,1926,1939,2152
GAA count: 21
GAG: 425,685,1914,2287
GAG count: 4
GGT: 299,1212,1434,1638,1659,1771,1824,2297
GGT count: 8
GGC: (0)
GGA: 498,670,797,1077,1543,1614
GGA count: 6
GGG: 395,982,1118,1352,1528,1620,2070
GGG count: 7
CAT: 113,137,255,308,318,606,621,677,690,703,739,1185,1387,
1424,1845,1947,2027,2139,2292
CAT count: 19
CAC: 456,833,876,1227,1367,1601,2255
CAC count: 7
ATT: 121,504,507,954,1038,1125,1215,1680
ATT count: 8
ATC: 208,1005,1290,1491,1569,1904,2182,2241
ATC count: 8
ATA: 735,1421,2008,2231
ATA count: 4
CTT: 134,174,213,379,392,408,542,884,988,1203,1267,1317,
1339,1507,1649,1696,2122,2188
CTT count: 18
CTC: 364,773,1220,1757,1977
CTC count: 5
CTA: 25,348,442,445,512,539,637,1370,1472,1980,2158
CTA count: 11
CTG: 329,613,898,907,1321,1475,2083
CTG count: 7
TTA: 37,236,293,1466,1535,1672,2185,2216
TTA count: 8
TTG: 1067,1699,2305
TTG count: 3
AAA: 55,433,564,570,957,1047,1131,1174,1446,1485,1500,1518,
1666,2031,2037,2172,2199,2209,2224
AAA count: 19
AAG: 1557
AAG count: 1
ATG: 1,196,311,1074,1147,1358,1892,2048
ATG count: 8
TTT: 169,337,359,979,1194,1264,1286,1342,1512,1693,1732,
1741,1860,1867,1910,2130
TTT count: 16
TTC: 162,655,2093
TTC count: 3
CCT: 296,1970,2001,2116
CCT count: 4
CCC: 471,1293,1967
CCC count: 3
CCA: 529,1095,1239,1604,1987,2193
CCA count: 6
CCG: (0)
TCT: 1414
TCT count: 1
TCC: 603,1718
TCC count: 2
TCA: 826,1168
TCA count: 2
TCG: (0)
AGT: 663,819,1245,1378,1440,1488,1953,2101,2283
AGT count: 9
AGC: (0)
ACT: 1158,1525,1635
ACT count: 3
ACC: 131,1301,1652
ACC count: 3
ACA: 221,270,711
ACA count: 3
ACG: (0)
TGG: 151,724
TGG count: 2
TAT: 1494,1827,1920
TAT count: 3
TAC: (0)
GTT: 640,1469
GTT count: 2
GTC: (0)
GTA: 439,922,2080,2212
GTA count: 4
GTG: (0)
TAA: 264,887,995
TAA count: 3
TAG: (0)
TGA: 584
TGA count: 1
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