Pages

Friday, March 31, 2023

Appendix Promoter-Terminator

This is an appendix to: MetaSUB - 2


The quantity of "consensus" promoters and "pribnow" promoters are compared to each other, as well as being compared to the quantity of terminators.


processing SRR10002674 consensus:

promoter count: 9,261,839
terminator count: 9,261,868

processing SRR10002674 pribnow:

promoter count: 9,261,853
terminator count: 9,261,868

processing SRR10153700 consensus:

promoter count: 97,187
terminator count: 99,096

processing SRR10153700 pribnow:

promoter count: 86,165
terminator count: 99,096

processing SRR10153696 consensus:

promoter count: 121,288
terminator count: 121,413

processing SRR10153696 pribnow:

promoter count: 115,355
terminator count: 121,413

processing SRR10153697 consensus:

promoter count: 125,825
terminator count: 126,039

processing SRR10153697 pribnow:

promoter count: 116,720
terminator count: 126,039

processing SRR10153698 consensus:

promoter count: 107,959
terminator count: 116,269

processing SRR10153698 pribnow:

promoter count: 109,868
terminator count: 116,269

processing SRR10153695 consensus:

promoter count: 144,591
terminator count: 147,216

processing SRR10153695 pribnow:

promoter count: 133,098
terminator count: 147,216

processing SRR10002698 consensus:

promoter count: 8,309,072
terminator count: 8,309,096

processing SRR10002698 pribnow:

promoter count: 8,308,615
terminator count: 8,308,600

processing SRR10002967 consensus:

promoter count: 7,483,353
terminator count: 7,483,384

processing SRR10002967 pribnow:

promoter count: 7,484,489
terminator count: 7,484,528

processing SRR10002723 consensus:

promoter count: 7,432,457
terminator count: 7,432,466

processing SRR10002723 pribnow:

promoter count: 7,432,413
terminator count: 7,432,458

processing SRR10153699 consensus:

promoter count: 93,018
terminator count: 93,278

processing SRR10153699 pribnow:

promoter count: 72,491
terminator count: 93,475
9,261,839
terminator count: 9,261,868

processing SRR10002674 pribnow:

promoter count: 9,261,853
terminator count: 9,261,868

processing SRR10153700 consensus:

promoter count: 97,187
terminator count: 99,096

processing SRR10153700 pribnow:

promoter count: 86,165
terminator count: 99,096

processing SRR10153696 consensus:

promoter count: 121,288
terminator count: 121,413

processing SRR10153696 pribnow:

promoter count: 115,355
terminator count: 121,413

processing SRR10153697 consensus:

promoter count: 125,825
terminator count: 126,039

processing SRR10153697 pribnow:

promoter count: 116,720
terminator count: 126,039

processing SRR10153698 consensus:

promoter count: 107,959
terminator count: 116,269

processing SRR10153698 pribnow:

promoter count: 109,868
terminator count: 116,269

processing SRR10153695 consensus:

promoter count: 144,591
terminator count: 147,216

processing SRR10153695 pribnow:

promoter count: 133,098
terminator count: 147,216

processing SRR10002698 consensus:

promoter count: 8,309,072
terminator count: 8,309,096

processing SRR10002698 pribnow:

promoter count: 8,308,615
terminator count: 8,308,600

processing SRR10002967 consensus:

promoter count: 7,483,353
terminator count: 7,483,384

processing SRR10002967 pribnow:

promoter count: 7,484,489
terminator count: 7,484,528

processing SRR10002723 consensus:

promoter count: 7,432,457
terminator count: 7,432,466

processing SRR10002723 pribnow:

promoter count: 7,432,413
terminator count: 7,432,458

processing SRR10153699 consensus:

promoter count: 93,018
terminator count: 93,278

processing SRR10153699 pribnow:

promoter count: 72,491
terminator count: 93,475

No comments:

Post a Comment