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Wednesday, June 15, 2022

On The Origin Of The Home Of COVID-19 - 30

Any Way The Wind Blows
On HighWay 61

I. Background

In the previous post of this series I compared the "original SARS-CoV-2 virus" from Wuhan, China to one of its more recent versions, "the Omicron Variant" (On The Origin Of The Home Of COVID-19 - 29).

That comparison "a million American deaths" after the original appeared, was not about whether or not the virus kills.

Today's appendices contain relatively recent genomes from various countries.

These appendices have a similar design compared to the appendices in the previous post, however, I have added additional tables in today's appendices. 

The process for developing the data shown in the appendices is explained in the MIT video at the end of this post, so "use it or lose it".

II. Comparison Tables

An extra comparison table is provided specifically to compare each non-Wuhan version of the virus to the Wuhan version, for the specific purpose of detecting substantial changes (not trivial changes).

I have also added a "Count Table" which provides the number of codons in the Wuhan version compared to number of codons in each non-Wuhan version (from around the globe). 

In this Count Table there are 51 viruses listed, only 3 of which are 'malformed':

Wuhan count: 71 (Malaysia/MYS/MT372480.1) count: 45
Wuhan count: 71 (East Timor/TLS/MT641766.1) count: 45
Wuhan count: 71 (Argentina/ARG/MW553295.1) count: 69

(3÷51 = 0.058823529, or ~5.9%). There are several reasons malformation or a new formation may take place (e.g.):

1) technicians improperly collected otherwise good samples, 
2) technicians were given bad samples,
3) chemicals damaged the host cell causing chimeric hosts and/or viruses,
4) proton tunneling caused a mutation,
5) natural change took place.

(The Doll As Metaphor - 4). Natural change does not take place in the haphazard manner generally suggested by The Warming Science Commentariat.

III. Results

The overall result depicted in the appendices is the same as in the previous post, in the sense that there is no substantial difference between the Wuhan version and these non-Wuhan versions in most cases.

The "take-home" shown in them is that the SARS-CoV-2 virus genome is not substantially variable.

Over a million people have died in the USA, and millions more around the globe, even though there has been no substantial change in the substantial portion of the virus that I can detect yet ("once a killer virus, always a killer virus?").

In future posts I am going to do a date sequence comparison from an SQL database that has close to 50,000 FASTA files in it.

IV. Menu of Appendices

Here is a menu of today's appendices for your perusal:

Countries
(Alphabetical)
Appendix: A-C
Appendix: D-G
Appendix: H-L
Appendix: M-O
Appendix: P-T
Appendix: U-Z

V. Closing Comments

I recommend that you use the Count Table first, notice any mismatches in numbers, and then look-up the country it applies to in the Countries menu appendix which applies.

Load that Countries menu appendix and peruse the codons, amino acids, and atom counts for the malformed virus to see how the Wuhan original SARS-CoV-2 virus compares to the more recent later SARS-CoV-2 virus discovered in that country.

The  "Wuhan Codon Sequence Compared To Subsequent Codons" HTML table (following the "Codons, Amino Acids and Chemical Formulas" HTML table) contains a link to the GenBank data of the Wuhan virus as well as a link to the more recent SARS-CoV-2 virus it is being compared to.

The next post in this series is here, the previous post in this series is here.


How the virus mRNA codons & amino acids are extracted from the genome:



Appendix Origin Comp List

This is an Appendix to: On The Origin Of The Home Of COVID-19 - 30

Wuhan count: 71 (Spain/ESP/MT198652.2) count: 71
Wuhan count: 71 (Germany/DEU/MT270101.1) count: 71
Wuhan count: 71 (Colombia/COL/MT256924.2) count: 71
Wuhan count: 71 (Ecuador/ECU/MW294007.1) count: 71
Wuhan count: 71 (Sri Lanka/LKA/MT371047.1) count: 71
Wuhan count: 71 (Taiwan/TWN/MT192759.1) count: 71
Wuhan count: 71 (Jamaica/JAM/MT507271.1) count: 71
Wuhan count: 71 (Israel/ISR/MT276597.1) count: 71
Wuhan count: 71 (Vietnam/VNM/MT192772.1) count: 71
Wuhan count: 71 (Kazakhstan/KAZ/MT428551.1) count: 71
Wuhan count: 71 (Malaysia/MYS/MT372480.1) count: 45
Wuhan count: 71 (Ghana/GHA/MT890210.1) count: 71
Wuhan count: 71 (Serbia/SRB/MT450872.1) count: 71
Wuhan count: 71 (Iran/IRN/MT320891.2) count: 71
Wuhan count: 71 (Brazil/BRA/MT126808.1) count: 71
Wuhan count: 71 (Cambodia/KHM/MW341443.1) count: 71
Wuhan count: 71 (Russia/RUS/MT635445.1) count: 71
Wuhan count: 71 (Egypt/EGY/MT510690.1) count: 71
Wuhan count: 71 (Pakistan/PAK/MT240479.1) count: 71
Wuhan count: 71 (China/CHN/MT039874.1) count: 71
Wuhan count: 71 (Peru/PER/MT263074.1) count: 71
Wuhan count: 71 (South Korea/KOR/MT304474.1) count: 71
Wuhan count: 71 (Turkey/TUR/MT327745.1) count: 71
Wuhan count: 71 (East Timor/TLS/MT641766.1) count: 45
Wuhan count: 71 (Philippines/PHL/MT919768.1) count: 71
Wuhan count: 71 (New Zealand/NZL/MT706050.1) count: 71
Wuhan count: 71 (Mexico/MEX/MT810758.1) count: 71
Wuhan count: 71 (Guatemala/GTM/MT844029.1) count: 71
Wuhan count: 71 (Mali/MLI/MW474739.1) count: 71
Wuhan count: 71 (Venezuela/VEN/MT907515.1) count: 71
Wuhan count: 71 (Chile/CHL/MT670013.1) count: 71
Wuhan count: 71 (Georgia/GEO/MT706453.1) count: 71
Wuhan count: 71 (Italy/ITA/MT066156.1) count: 71
Wuhan count: 71 (Canada/CAN/MW309426.1) count: 71
Wuhan count: 71 (Poland/POL/MT499208.1) count: 71
Wuhan count: 71 (Belize/BLZ/MT844023.1) count: 71
Wuhan count: 71 (Nigeria/NGA/MT576584.1) count: 71
Wuhan count: 71 (Myanmar/MMR/MW491243.1) count: 71
Wuhan count: 71 (Thailand/THA/MT447154.1) count: 71
Wuhan count: 71 (Argentina/ARG/MW553295.1) count: 69
Wuhan count: 71 (Nepal/NPL/MT072688.1) count: 71
Wuhan count: 71 (Lebanon/LBN/MT801000.1) count: 71
Wuhan count: 71 (Netherlands/NLD/MT510999.1) count: 71
Wuhan count: 71 (Malta/MLT/MW079418.1) count: 71
Wuhan count: 71 (Hong Kong/HKG/MT114412.1) count: 71
Wuhan count: 71 (Morocco/MAR/MT568645.1) count: 71
Wuhan count: 71 (South Africa/ZAF/MT324062.1) count: 71
Wuhan count: 71 (United States/USA/MN985325.1) count: 71
Wuhan count: 71 (Jordan/JOR/MT811544.1) count: 71
Wuhan count: 71 (Greece/GRC/MT328032.1) count: 71
Wuhan count: 71 (Dominican/DOM/MW494127.1) count: 71
Wuhan count: 71 (Saudi Arabia/SAU/MT630421.1) count: 71
Wuhan count: 71 (Bahrain/BHR/MT731346.1) count: 71
Wuhan count: 71 (Benin/BEN/MT653071.1) count: 71
Wuhan count: 71 (India/IND/MT012098.1) count: 71
Wuhan count: 71 (Iraq/IRQ/MT940481.1) count: 71
Wuhan count: 71 (France/FRA/MT320538.2) count: 71
Wuhan count: 71 (Bangladesh/BGD/MT476385.1) count: 71
Wuhan count: 71 (Sweden/SWE/MT093571.1) count: 71
Wuhan count: 71 (Guam/GUM/MT459985.1) count: 71
Wuhan count: 71 (Australia/AUS/MT007544.1) count: 71
Wuhan count: 71 (Tunisia/TUN/MT499215.1) count: 71
Wuhan count: 71 (Sierra Leone/SLE/MT872492.1) count: 71
Wuhan count: 71 (Uruguay/URY/MT466071.1) count: 71
Wuhan count: 71 (Czech/CZE/MT371568.1) count: 71
Wuhan count: 71 (Zambia/ZMB/MT790522.1) count: 71

Appendix Origin U-Z

This is an Appendix to: On The Origin Of The Home Of COVID-19 - 30



Codons, Amino Acids and Chemical Formulas
Arranged By Order-of-appearance
In The Nucleotides of
MT790522.1 (Zambia)
Codon Amino Acid
('AA')
AA
Abbr.
AA
Ltr
Codon[1]
(formula)
Codon[2]
(formula)
Codon[3]
(formula)
Total Atoms
In Codon
AUG Methionine MET M C5H5N5 C4H4N2O2 C5H5N5O1 C14H14N12O3
CAU Histidine HIS H C4H5N3O1 C5H5N5 C4H4N2O2 C13H14N10O3
UUG Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5O1 C13H13N9O5
CAU Histidine HIS H C4H5N3O1 C5H5N5 C4H4N2O2 C13H14N10O3
AGG Arginine ARG R C5H5N5 C5H5N5O1 C5H5N5O1 C15H15N15O2
CUG Leucine LEU L C4H5N3O1 C4H4N2O2 C5H5N5O1 C13H14N10O4
CUC Leucine LEU L C4H5N3O1 C4H4N2O2 C4H5N3O1 C12H14N8O4
UUG Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5O1 C13H13N9O5
UAC Tyrosine TYR Y C4H4N2O2 C5H5N5 C4H5N3O1 C13H14N10O3
UCU Serine SER S C4H4N2O2 C4H5N3O1 C4H4N2O2 C12H13N7O5
CUC Leucine LEU L C4H5N3O1 C4H4N2O2 C4H5N3O1 C12H14N8O4
UUG Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5O1 C13H13N9O5
CUG Leucine LEU L C4H5N3O1 C4H4N2O2 C5H5N5O1 C13H14N10O4
CUC Leucine LEU L C4H5N3O1 C4H4N2O2 C4H5N3O1 C12H14N8O4
CUG Leucine LEU L C4H5N3O1 C4H4N2O2 C5H5N5O1 C13H14N10O4
UAC Tyrosine TYR Y C4H4N2O2 C5H5N5 C4H5N3O1 C13H14N10O3
AGA Arginine ARG R C5H5N5 C5H5N5O1 C5H5N5 C15H15N15O1
AGG Arginine ARG R C5H5N5 C5H5N5O1 C5H5N5O1 C15H15N15O2
CUA Leucine LEU L C4H5N3O1 C4H4N2O2 C5H5N5 C13H14N10O3
AUG Methionine MET M C5H5N5 C4H4N2O2 C5H5N5O1 C14H14N12O3
UUA Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5 C13H13N9O4
UCA Serine SER S C4H4N2O2 C4H5N3O1 C5H5N5 C13H14N10O3
UUG Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5O1 C13H13N9O5
AUG Methionine MET M C5H5N5 C4H4N2O2 C5H5N5O1 C14H14N12O3
AUG Methionine MET M C5H5N5 C4H4N2O2 C5H5N5O1 C14H14N12O3
UCG Serine SER S C4H4N2O2 C4H5N3O1 C5H5N5O1 C13H14N10O4
AAC Asparagine ASN N C5H5N5 C5H5N5 C4H5N3O1 C14H15N13O1
UCG Serine SER S C4H4N2O2 C4H5N3O1 C5H5N5O1 C13H14N10O4
AUG Methionine MET M C5H5N5 C4H4N2O2 C5H5N5O1 C14H14N12O3
UUA Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5 C13H13N9O4
AGU Serine SER S C5H5N5 C5H5N5O1 C4H4N2O2 C14H14N12O3
UAG Z_Stop STP Z C4H4N2O2 C5H5N5 C5H5N5O1 C14H14N12O3
UAC Tyrosine TYR Y C4H4N2O2 C5H5N5 C4H5N3O1 C13H14N10O3
UAC Tyrosine TYR Y C4H4N2O2 C5H5N5 C4H5N3O1 C13H14N10O3
UGA Z_Stop STP Z C4H4N2O2 C5H5N5O1 C5H5N5 C14H14N12O3
UUG Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5O1 C13H13N9O5
UAG Z_Stop STP Z C4H4N2O2 C5H5N5 C5H5N5O1 C14H14N12O3
*** end
in-frame
*** *** not
in-frame
begins *** ***
CAG Glutamine GLN Q C4H5N3O1 C5H5N5 C5H5N5O1 C14H15N13O2
GUG Valine VAL V C5H5N5O1 C4H4N2O2 C5H5N5O1 C14H14N12O4
GAU Aspartic acid ASP D C5H5N5O1 C5H5N5 C4H4N2O2 C14H14N12O3
CAA Glutamine GLN Q C4H5N3O1 C5H5N5 C5H5N5 C14H15N13O1
UUU Phenylalanine PHE F C4H4N2O2 C4H4N2O2 C4H4N2O2 C12H12N6O6
CCC Proline PRO P C4H5N3O1 C4H5N3O1 C4H5N3O1 C12H15N9O3
GCA Alanine ALA A C5H5N5O1 C4H5N3O1 C5H5N5 C14H15N13O2
AAA Lysine LYS K C5H5N5 C5H5N5 C5H5N5 C15H15N15O0
AAA Lysine LYS K C5H5N5 C5H5N5 C5H5N5 C15H15N15O0
AUU Isoleucine ILE I C5H5N5 C4H4N2O2 C4H4N2O2 C13H13N9O4
UGC Cysteine CYS C C4H4N2O2 C5H5N5O1 C4H5N3O1 C13H14N10O4
GUG Valine VAL V C5H5N5O1 C4H4N2O2 C5H5N5O1 C14H14N12O4
UUU Phenylalanine PHE F C4H4N2O2 C4H4N2O2 C4H4N2O2 C12H12N6O6
CCG Proline PRO P C4H5N3O1 C4H5N3O1 C5H5N5O1 C13H15N11O3
GUG Valine VAL V C5H5N5O1 C4H4N2O2 C5H5N5O1 C14H14N12O4
AAG Lysine LYS K C5H5N5 C5H5N5 C5H5N5O1 C15H15N15O1
CCU Proline PRO P C4H5N3O1 C4H5N3O1 C4H4N2O2 C12H14N8O4
ACA Threonine THR T C5H5N5 C4H5N3O1 C5H5N5 C14H15N13O1
AUC Isoleucine ILE I C5H5N5 C4H4N2O2 C4H5N3O1 C13H14N10O3
U






U






CCU Proline PRO P C4H5N3O1 C4H5N3O1 C4H4N2O2 C12H14N8O4
AUA Isoleucine ILE I C5H5N5 C4H4N2O2 C5H5N5 C14H14N12O2
UUU Phenylalanine PHE F C4H4N2O2 C4H4N2O2 C4H4N2O2 C12H12N6O6
GAG Glutamic acid GLU E C5H5N5O1 C5H5N5 C5H5N5O1 C15H15N15O2
AUU Isoleucine ILE I C5H5N5 C4H4N2O2 C4H4N2O2 C13H13N9O4
GUC Valine VAL V C5H5N5O1 C4H4N2O2 C4H5N3O1 C13H14N10O4
AUA Isoleucine ILE I C5H5N5 C4H4N2O2 C5H5N5 C14H14N12O2
GUC Valine VAL V C5H5N5O1 C4H4N2O2 C4H5N3O1 C13H14N10O4
GUG Valine VAL V C5H5N5O1 C4H4N2O2 C5H5N5O1 C14H14N12O4
GUU Valine VAL V C5H5N5O1 C4H4N2O2 C4H4N2O2 C13H13N9O5
AUC Isoleucine ILE I C5H5N5 C4H4N2O2 C4H5N3O1 C13H14N10O3
GAC Aspartic acid ASP D C5H5N5O1 C5H5N5 C4H5N3O1 C14H15N13O2
C









Wuhan Codon Sequence Compared To Subsequent Codons
Arranged By Order-of-appearance
In The Nucleotides of
Wuhan: NC_045512.2
vs
MT790522.1 Zambia
Row Wuhan
Codon
Comp.
Codon
Match
1 AUG AUG Y
2 CAU CAU Y
3 UUG UUG Y
4 CAU CAU Y
5 AGG AGG Y
6 CUG CUG Y
7 CUC CUC Y
8 UUG UUG Y
9 UAC UAC Y
10 UCU UCU Y
11 CUC CUC Y
12 UUG UUG Y
13 CUG CUG Y
14 CUC CUC Y
15 CUG CUG Y
16 UAC UAC Y
17 AGA AGA Y
18 AGG AGG Y
19 CUA CUA Y
20 AUG AUG Y
21 UUA UUA Y
22 UCA UCA Y
23 UUG UUG Y
24 AUG AUG Y
25 AUG AUG Y
26 UCG UCG Y
27 AAC AAC Y
28 UCG UCG Y
29 AUG AUG Y
30 UUA UUA Y
31 AGU AGU Y
32 UAG UAG Y
33 UAC UAC Y
34 UAC UAC Y
35 UGA UGA Y
36 UUG UUG Y
37 UAG UAG Y
*** *** *** ***
1 CAG CAG Y
2 GUG GUG Y
3 GAU GAU Y
4 CAA CAA Y
5 UUU UUU Y
6 CCC CCC Y
7 GCA GCA Y
8 AAA AAA Y
9 AAA AAA Y
10 AUU AUU Y
11 UGC UGC Y
12 GUG GUG Y
13 UUU UUU Y
14 CCG CCG Y
15 GUG GUG Y
16 AAG AAG Y
17 CCU CCU Y
18 ACA ACA Y
19 AUC AUC Y
20 U U Y
21 U U Y
22 CCU CCU Y
23 AUA AUA Y
24 UUU UUU Y
25 GAG GAG Y
26 AUU AUU Y
27 GUC GUC Y
28 AUA AUA Y
29 GUC GUC Y
30 GUG GUG Y
31 GUU GUU Y
32 AUC AUC Y
33 GAC GAC Y
34 C C Y



Codons, Amino Acids and Chemical Formulas
Arranged By Order-of-appearance
In The Nucleotides of
MT466071.1 (Uruguay)
Codon Amino Acid
('AA')
AA
Abbr.
AA
Ltr
Codon[1]
(formula)
Codon[2]
(formula)
Codon[3]
(formula)
Total Atoms
In Codon
AUG Methionine MET M C5H5N5 C4H4N2O2 C5H5N5O1 C14H14N12O3
CAU Histidine HIS H C4H5N3O1 C5H5N5 C4H4N2O2 C13H14N10O3
UUG Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5O1 C13H13N9O5
CAU Histidine HIS H C4H5N3O1 C5H5N5 C4H4N2O2 C13H14N10O3
AGG Arginine ARG R C5H5N5 C5H5N5O1 C5H5N5O1 C15H15N15O2
CUG Leucine LEU L C4H5N3O1 C4H4N2O2 C5H5N5O1 C13H14N10O4
CUC Leucine LEU L C4H5N3O1 C4H4N2O2 C4H5N3O1 C12H14N8O4
UUG Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5O1 C13H13N9O5
UAC Tyrosine TYR Y C4H4N2O2 C5H5N5 C4H5N3O1 C13H14N10O3
UCU Serine SER S C4H4N2O2 C4H5N3O1 C4H4N2O2 C12H13N7O5
CUC Leucine LEU L C4H5N3O1 C4H4N2O2 C4H5N3O1 C12H14N8O4
UUG Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5O1 C13H13N9O5
CUG Leucine LEU L C4H5N3O1 C4H4N2O2 C5H5N5O1 C13H14N10O4
CUC Leucine LEU L C4H5N3O1 C4H4N2O2 C4H5N3O1 C12H14N8O4
CUG Leucine LEU L C4H5N3O1 C4H4N2O2 C5H5N5O1 C13H14N10O4
UAC Tyrosine TYR Y C4H4N2O2 C5H5N5 C4H5N3O1 C13H14N10O3
AGA Arginine ARG R C5H5N5 C5H5N5O1 C5H5N5 C15H15N15O1
AGG Arginine ARG R C5H5N5 C5H5N5O1 C5H5N5O1 C15H15N15O2
CUA Leucine LEU L C4H5N3O1 C4H4N2O2 C5H5N5 C13H14N10O3
AUG Methionine MET M C5H5N5 C4H4N2O2 C5H5N5O1 C14H14N12O3
UUA Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5 C13H13N9O4
UCA Serine SER S C4H4N2O2 C4H5N3O1 C5H5N5 C13H14N10O3
UUG Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5O1 C13H13N9O5
AUG Methionine MET M C5H5N5 C4H4N2O2 C5H5N5O1 C14H14N12O3
AUG Methionine MET M C5H5N5 C4H4N2O2 C5H5N5O1 C14H14N12O3
UCG Serine SER S C4H4N2O2 C4H5N3O1 C5H5N5O1 C13H14N10O4
AAC Asparagine ASN N C5H5N5 C5H5N5 C4H5N3O1 C14H15N13O1
UCG Serine SER S C4H4N2O2 C4H5N3O1 C5H5N5O1 C13H14N10O4
AUG Methionine MET M C5H5N5 C4H4N2O2 C5H5N5O1 C14H14N12O3
UUA Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5 C13H13N9O4
AGU Serine SER S C5H5N5 C5H5N5O1 C4H4N2O2 C14H14N12O3
UAG Z_Stop STP Z C4H4N2O2 C5H5N5 C5H5N5O1 C14H14N12O3
UAC Tyrosine TYR Y C4H4N2O2 C5H5N5 C4H5N3O1 C13H14N10O3
UAC Tyrosine TYR Y C4H4N2O2 C5H5N5 C4H5N3O1 C13H14N10O3
UGA Z_Stop STP Z C4H4N2O2 C5H5N5O1 C5H5N5 C14H14N12O3
UUG Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5O1 C13H13N9O5
UAG Z_Stop STP Z C4H4N2O2 C5H5N5 C5H5N5O1 C14H14N12O3
*** end
in-frame
*** *** not
in-frame
begins *** ***
CAG Glutamine GLN Q C4H5N3O1 C5H5N5 C5H5N5O1 C14H15N13O2
GUG Valine VAL V C5H5N5O1 C4H4N2O2 C5H5N5O1 C14H14N12O4
GAU Aspartic acid ASP D C5H5N5O1 C5H5N5 C4H4N2O2 C14H14N12O3
CAA Glutamine GLN Q C4H5N3O1 C5H5N5 C5H5N5 C14H15N13O1
UUU Phenylalanine PHE F C4H4N2O2 C4H4N2O2 C4H4N2O2 C12H12N6O6
CCC Proline PRO P C4H5N3O1 C4H5N3O1 C4H5N3O1 C12H15N9O3
GCA Alanine ALA A C5H5N5O1 C4H5N3O1 C5H5N5 C14H15N13O2
AAA Lysine LYS K C5H5N5 C5H5N5 C5H5N5 C15H15N15O0
AAA Lysine LYS K C5H5N5 C5H5N5 C5H5N5 C15H15N15O0
AUU Isoleucine ILE I C5H5N5 C4H4N2O2 C4H4N2O2 C13H13N9O4
UGC Cysteine CYS C C4H4N2O2 C5H5N5O1 C4H5N3O1 C13H14N10O4
GUG Valine VAL V C5H5N5O1 C4H4N2O2 C5H5N5O1 C14H14N12O4
UUU Phenylalanine PHE F C4H4N2O2 C4H4N2O2 C4H4N2O2 C12H12N6O6
CCG Proline PRO P C4H5N3O1 C4H5N3O1 C5H5N5O1 C13H15N11O3
GUG Valine VAL V C5H5N5O1 C4H4N2O2 C5H5N5O1 C14H14N12O4
AAG Lysine LYS K C5H5N5 C5H5N5 C5H5N5O1 C15H15N15O1
CCU Proline PRO P C4H5N3O1 C4H5N3O1 C4H4N2O2 C12H14N8O4
ACA Threonine THR T C5H5N5 C4H5N3O1 C5H5N5 C14H15N13O1
AUC Isoleucine ILE I C5H5N5 C4H4N2O2 C4H5N3O1 C13H14N10O3
U






U






CCU Proline PRO P C4H5N3O1 C4H5N3O1 C4H4N2O2 C12H14N8O4
AUA Isoleucine ILE I C5H5N5 C4H4N2O2 C5H5N5 C14H14N12O2
UUU Phenylalanine PHE F C4H4N2O2 C4H4N2O2 C4H4N2O2 C12H12N6O6
GAG Glutamic acid GLU E C5H5N5O1 C5H5N5 C5H5N5O1 C15H15N15O2
AUU Isoleucine ILE I C5H5N5 C4H4N2O2 C4H4N2O2 C13H13N9O4
GUC Valine VAL V C5H5N5O1 C4H4N2O2 C4H5N3O1 C13H14N10O4
AUA Isoleucine ILE I C5H5N5 C4H4N2O2 C5H5N5 C14H14N12O2
GUC Valine VAL V C5H5N5O1 C4H4N2O2 C4H5N3O1 C13H14N10O4
GUG Valine VAL V C5H5N5O1 C4H4N2O2 C5H5N5O1 C14H14N12O4
GUU Valine VAL V C5H5N5O1 C4H4N2O2 C4H4N2O2 C13H13N9O5
AUC Isoleucine ILE I C5H5N5 C4H4N2O2 C4H5N3O1 C13H14N10O3
GAC Aspartic acid ASP D C5H5N5O1 C5H5N5 C4H5N3O1 C14H15N13O2
C









Wuhan Codon Sequence Compared To Subsequent Codons
Arranged By Order-of-appearance
In The Nucleotides of
Wuhan: NC_045512.2
vs
MT466071.1 Uruguay
Row Wuhan
Codon
Comp.
Codon
Match
1 AUG AUG Y
2 CAU CAU Y
3 UUG UUG Y
4 CAU CAU Y
5 AGG AGG Y
6 CUG CUG Y
7 CUC CUC Y
8 UUG UUG Y
9 UAC UAC Y
10 UCU UCU Y
11 CUC CUC Y
12 UUG UUG Y
13 CUG CUG Y
14 CUC CUC Y
15 CUG CUG Y
16 UAC UAC Y
17 AGA AGA Y
18 AGG AGG Y
19 CUA CUA Y
20 AUG AUG Y
21 UUA UUA Y
22 UCA UCA Y
23 UUG UUG Y
24 AUG AUG Y
25 AUG AUG Y
26 UCG UCG Y
27 AAC AAC Y
28 UCG UCG Y
29 AUG AUG Y
30 UUA UUA Y
31 AGU AGU Y
32 UAG UAG Y
33 UAC UAC Y
34 UAC UAC Y
35 UGA UGA Y
36 UUG UUG Y
37 UAG UAG Y
*** *** *** ***
1 CAG CAG Y
2 GUG GUG Y
3 GAU GAU Y
4 CAA CAA Y
5 UUU UUU Y
6 CCC CCC Y
7 GCA GCA Y
8 AAA AAA Y
9 AAA AAA Y
10 AUU AUU Y
11 UGC UGC Y
12 GUG GUG Y
13 UUU UUU Y
14 CCG CCG Y
15 GUG GUG Y
16 AAG AAG Y
17 CCU CCU Y
18 ACA ACA Y
19 AUC AUC Y
20 U U Y
21 U U Y
22 CCU CCU Y
23 AUA AUA Y
24 UUU UUU Y
25 GAG GAG Y
26 AUU AUU Y
27 GUC GUC Y
28 AUA AUA Y
29 GUC GUC Y
30 GUG GUG Y
31 GUU GUU Y
32 AUC AUC Y
33 GAC GAC Y
34 C C Y



Codons, Amino Acids and Chemical Formulas
Arranged By Order-of-appearance
In The Nucleotides of
MN985325.1 (United States)
Codon Amino Acid
('AA')
AA
Abbr.
AA
Ltr
Codon[1]
(formula)
Codon[2]
(formula)
Codon[3]
(formula)
Total Atoms
In Codon
AUG Methionine MET M C5H5N5 C4H4N2O2 C5H5N5O1 C14H14N12O3
CAU Histidine HIS H C4H5N3O1 C5H5N5 C4H4N2O2 C13H14N10O3
UUG Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5O1 C13H13N9O5
CAU Histidine HIS H C4H5N3O1 C5H5N5 C4H4N2O2 C13H14N10O3
AGG Arginine ARG R C5H5N5 C5H5N5O1 C5H5N5O1 C15H15N15O2
CUG Leucine LEU L C4H5N3O1 C4H4N2O2 C5H5N5O1 C13H14N10O4
CUC Leucine LEU L C4H5N3O1 C4H4N2O2 C4H5N3O1 C12H14N8O4
UUG Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5O1 C13H13N9O5
UAC Tyrosine TYR Y C4H4N2O2 C5H5N5 C4H5N3O1 C13H14N10O3
UCU Serine SER S C4H4N2O2 C4H5N3O1 C4H4N2O2 C12H13N7O5
CUC Leucine LEU L C4H5N3O1 C4H4N2O2 C4H5N3O1 C12H14N8O4
UUG Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5O1 C13H13N9O5
CUG Leucine LEU L C4H5N3O1 C4H4N2O2 C5H5N5O1 C13H14N10O4
CUC Leucine LEU L C4H5N3O1 C4H4N2O2 C4H5N3O1 C12H14N8O4
CUG Leucine LEU L C4H5N3O1 C4H4N2O2 C5H5N5O1 C13H14N10O4
UAC Tyrosine TYR Y C4H4N2O2 C5H5N5 C4H5N3O1 C13H14N10O3
AGA Arginine ARG R C5H5N5 C5H5N5O1 C5H5N5 C15H15N15O1
AGG Arginine ARG R C5H5N5 C5H5N5O1 C5H5N5O1 C15H15N15O2
CUA Leucine LEU L C4H5N3O1 C4H4N2O2 C5H5N5 C13H14N10O3
AUG Methionine MET M C5H5N5 C4H4N2O2 C5H5N5O1 C14H14N12O3
UUA Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5 C13H13N9O4
UCA Serine SER S C4H4N2O2 C4H5N3O1 C5H5N5 C13H14N10O3
UUG Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5O1 C13H13N9O5
AUG Methionine MET M C5H5N5 C4H4N2O2 C5H5N5O1 C14H14N12O3
AUG Methionine MET M C5H5N5 C4H4N2O2 C5H5N5O1 C14H14N12O3
UCG Serine SER S C4H4N2O2 C4H5N3O1 C5H5N5O1 C13H14N10O4
AAC Asparagine ASN N C5H5N5 C5H5N5 C4H5N3O1 C14H15N13O1
UCG Serine SER S C4H4N2O2 C4H5N3O1 C5H5N5O1 C13H14N10O4
AUG Methionine MET M C5H5N5 C4H4N2O2 C5H5N5O1 C14H14N12O3
UUA Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5 C13H13N9O4
AGU Serine SER S C5H5N5 C5H5N5O1 C4H4N2O2 C14H14N12O3
UAG Z_Stop STP Z C4H4N2O2 C5H5N5 C5H5N5O1 C14H14N12O3
UAC Tyrosine TYR Y C4H4N2O2 C5H5N5 C4H5N3O1 C13H14N10O3
UAC Tyrosine TYR Y C4H4N2O2 C5H5N5 C4H5N3O1 C13H14N10O3
UGA Z_Stop STP Z C4H4N2O2 C5H5N5O1 C5H5N5 C14H14N12O3
UUG Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5O1 C13H13N9O5
UAG Z_Stop STP Z C4H4N2O2 C5H5N5 C5H5N5O1 C14H14N12O3
*** end
in-frame
*** *** not
in-frame
begins *** ***
CAG Glutamine GLN Q C4H5N3O1 C5H5N5 C5H5N5O1 C14H15N13O2
GUG Valine VAL V C5H5N5O1 C4H4N2O2 C5H5N5O1 C14H14N12O4
GAU Aspartic acid ASP D C5H5N5O1 C5H5N5 C4H4N2O2 C14H14N12O3
CAA Glutamine GLN Q C4H5N3O1 C5H5N5 C5H5N5 C14H15N13O1
UUU Phenylalanine PHE F C4H4N2O2 C4H4N2O2 C4H4N2O2 C12H12N6O6
CCC Proline PRO P C4H5N3O1 C4H5N3O1 C4H5N3O1 C12H15N9O3
GCA Alanine ALA A C5H5N5O1 C4H5N3O1 C5H5N5 C14H15N13O2
AAA Lysine LYS K C5H5N5 C5H5N5 C5H5N5 C15H15N15O0
AAA Lysine LYS K C5H5N5 C5H5N5 C5H5N5 C15H15N15O0
AUU Isoleucine ILE I C5H5N5 C4H4N2O2 C4H4N2O2 C13H13N9O4
UGC Cysteine CYS C C4H4N2O2 C5H5N5O1 C4H5N3O1 C13H14N10O4
GUG Valine VAL V C5H5N5O1 C4H4N2O2 C5H5N5O1 C14H14N12O4
UUU Phenylalanine PHE F C4H4N2O2 C4H4N2O2 C4H4N2O2 C12H12N6O6
CCG Proline PRO P C4H5N3O1 C4H5N3O1 C5H5N5O1 C13H15N11O3
GUG Valine VAL V C5H5N5O1 C4H4N2O2 C5H5N5O1 C14H14N12O4
AAG Lysine LYS K C5H5N5 C5H5N5 C5H5N5O1 C15H15N15O1
CCU Proline PRO P C4H5N3O1 C4H5N3O1 C4H4N2O2 C12H14N8O4
ACA Threonine THR T C5H5N5 C4H5N3O1 C5H5N5 C14H15N13O1
AUC Isoleucine ILE I C5H5N5 C4H4N2O2 C4H5N3O1 C13H14N10O3
U






U






CCU Proline PRO P C4H5N3O1 C4H5N3O1 C4H4N2O2 C12H14N8O4
AUA Isoleucine ILE I C5H5N5 C4H4N2O2 C5H5N5 C14H14N12O2
UUU Phenylalanine PHE F C4H4N2O2 C4H4N2O2 C4H4N2O2 C12H12N6O6
GAG Glutamic acid GLU E C5H5N5O1 C5H5N5 C5H5N5O1 C15H15N15O2
AUU Isoleucine ILE I C5H5N5 C4H4N2O2 C4H4N2O2 C13H13N9O4
GUC Valine VAL V C5H5N5O1 C4H4N2O2 C4H5N3O1 C13H14N10O4
AUA Isoleucine ILE I C5H5N5 C4H4N2O2 C5H5N5 C14H14N12O2
GUC Valine VAL V C5H5N5O1 C4H4N2O2 C4H5N3O1 C13H14N10O4
GUG Valine VAL V C5H5N5O1 C4H4N2O2 C5H5N5O1 C14H14N12O4
GUU Valine VAL V C5H5N5O1 C4H4N2O2 C4H4N2O2 C13H13N9O5
AUC Isoleucine ILE I C5H5N5 C4H4N2O2 C4H5N3O1 C13H14N10O3
GAC Aspartic acid ASP D C5H5N5O1 C5H5N5 C4H5N3O1 C14H15N13O2
C









Wuhan Codon Sequence Compared To Subsequent Codons
Arranged By Order-of-appearance
In The Nucleotides of
Wuhan: NC_045512.2
vs
MN985325.1 United States
Row Wuhan
Codon
Comp.
Codon
Match
1 AUG AUG Y
2 CAU CAU Y
3 UUG UUG Y
4 CAU CAU Y
5 AGG AGG Y
6 CUG CUG Y
7 CUC CUC Y
8 UUG UUG Y
9 UAC UAC Y
10 UCU UCU Y
11 CUC CUC Y
12 UUG UUG Y
13 CUG CUG Y
14 CUC CUC Y
15 CUG CUG Y
16 UAC UAC Y
17 AGA AGA Y
18 AGG AGG Y
19 CUA CUA Y
20 AUG AUG Y
21 UUA UUA Y
22 UCA UCA Y
23 UUG UUG Y
24 AUG AUG Y
25 AUG AUG Y
26 UCG UCG Y
27 AAC AAC Y
28 UCG UCG Y
29 AUG AUG Y
30 UUA UUA Y
31 AGU AGU Y
32 UAG UAG Y
33 UAC UAC Y
34 UAC UAC Y
35 UGA UGA Y
36 UUG UUG Y
37 UAG UAG Y
*** *** *** ***
1 CAG CAG Y
2 GUG GUG Y
3 GAU GAU Y
4 CAA CAA Y
5 UUU UUU Y
6 CCC CCC Y
7 GCA GCA Y
8 AAA AAA Y
9 AAA AAA Y
10 AUU AUU Y
11 UGC UGC Y
12 GUG GUG Y
13 UUU UUU Y
14 CCG CCG Y
15 GUG GUG Y
16 AAG AAG Y
17 CCU CCU Y
18 ACA ACA Y
19 AUC AUC Y
20 U U Y
21 U U Y
22 CCU CCU Y
23 AUA AUA Y
24 UUU UUU Y
25 GAG GAG Y
26 AUU AUU Y
27 GUC GUC Y
28 AUA AUA Y
29 GUC GUC Y
30 GUG GUG Y
31 GUU GUU Y
32 AUC AUC Y
33 GAC GAC Y
34 C C Y



Codons, Amino Acids and Chemical Formulas
Arranged By Order-of-appearance
In The Nucleotides of
MT324062.1 (South Africa)
Codon Amino Acid
('AA')
AA
Abbr.
AA
Ltr
Codon[1]
(formula)
Codon[2]
(formula)
Codon[3]
(formula)
Total Atoms
In Codon
AUG Methionine MET M C5H5N5 C4H4N2O2 C5H5N5O1 C14H14N12O3
CAU Histidine HIS H C4H5N3O1 C5H5N5 C4H4N2O2 C13H14N10O3
UUG Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5O1 C13H13N9O5
CAU Histidine HIS H C4H5N3O1 C5H5N5 C4H4N2O2 C13H14N10O3
AGG Arginine ARG R C5H5N5 C5H5N5O1 C5H5N5O1 C15H15N15O2
CUG Leucine LEU L C4H5N3O1 C4H4N2O2 C5H5N5O1 C13H14N10O4
CUC Leucine LEU L C4H5N3O1 C4H4N2O2 C4H5N3O1 C12H14N8O4
UUG Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5O1 C13H13N9O5
UAC Tyrosine TYR Y C4H4N2O2 C5H5N5 C4H5N3O1 C13H14N10O3
UCU Serine SER S C4H4N2O2 C4H5N3O1 C4H4N2O2 C12H13N7O5
CUC Leucine LEU L C4H5N3O1 C4H4N2O2 C4H5N3O1 C12H14N8O4
UUG Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5O1 C13H13N9O5
CUG Leucine LEU L C4H5N3O1 C4H4N2O2 C5H5N5O1 C13H14N10O4
CUC Leucine LEU L C4H5N3O1 C4H4N2O2 C4H5N3O1 C12H14N8O4
CUG Leucine LEU L C4H5N3O1 C4H4N2O2 C5H5N5O1 C13H14N10O4
UAC Tyrosine TYR Y C4H4N2O2 C5H5N5 C4H5N3O1 C13H14N10O3
AGA Arginine ARG R C5H5N5 C5H5N5O1 C5H5N5 C15H15N15O1
AGG Arginine ARG R C5H5N5 C5H5N5O1 C5H5N5O1 C15H15N15O2
CUA Leucine LEU L C4H5N3O1 C4H4N2O2 C5H5N5 C13H14N10O3
AUG Methionine MET M C5H5N5 C4H4N2O2 C5H5N5O1 C14H14N12O3
UUA Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5 C13H13N9O4
UCA Serine SER S C4H4N2O2 C4H5N3O1 C5H5N5 C13H14N10O3
UUG Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5O1 C13H13N9O5
AUG Methionine MET M C5H5N5 C4H4N2O2 C5H5N5O1 C14H14N12O3
AUG Methionine MET M C5H5N5 C4H4N2O2 C5H5N5O1 C14H14N12O3
UCG Serine SER S C4H4N2O2 C4H5N3O1 C5H5N5O1 C13H14N10O4
AAC Asparagine ASN N C5H5N5 C5H5N5 C4H5N3O1 C14H15N13O1
UCG Serine SER S C4H4N2O2 C4H5N3O1 C5H5N5O1 C13H14N10O4
AUG Methionine MET M C5H5N5 C4H4N2O2 C5H5N5O1 C14H14N12O3
UUA Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5 C13H13N9O4
AGU Serine SER S C5H5N5 C5H5N5O1 C4H4N2O2 C14H14N12O3
UAG Z_Stop STP Z C4H4N2O2 C5H5N5 C5H5N5O1 C14H14N12O3
UAC Tyrosine TYR Y C4H4N2O2 C5H5N5 C4H5N3O1 C13H14N10O3
UAC Tyrosine TYR Y C4H4N2O2 C5H5N5 C4H5N3O1 C13H14N10O3
UGA Z_Stop STP Z C4H4N2O2 C5H5N5O1 C5H5N5 C14H14N12O3
UUG Leucine LEU L C4H4N2O2 C4H4N2O2 C5H5N5O1 C13H13N9O5
UAG Z_Stop STP Z C4H4N2O2 C5H5N5 C5H5N5O1 C14H14N12O3
*** end
in-frame
*** *** not
in-frame
begins *** ***
CAG Glutamine GLN Q C4H5N3O1 C5H5N5 C5H5N5O1 C14H15N13O2
GUG Valine VAL V C5H5N5O1 C4H4N2O2 C5H5N5O1 C14H14N12O4
GAU Aspartic acid ASP D C5H5N5O1 C5H5N5 C4H4N2O2 C14H14N12O3
CAA Glutamine GLN Q C4H5N3O1 C5H5N5 C5H5N5 C14H15N13O1
UUU Phenylalanine PHE F C4H4N2O2 C4H4N2O2 C4H4N2O2 C12H12N6O6
CCC Proline PRO P C4H5N3O1 C4H5N3O1 C4H5N3O1 C12H15N9O3
GCA Alanine ALA A C5H5N5O1 C4H5N3O1 C5H5N5 C14H15N13O2
AAA Lysine LYS K C5H5N5 C5H5N5 C5H5N5 C15H15N15O0
AAA Lysine LYS K C5H5N5 C5H5N5 C5H5N5 C15H15N15O0
AUU Isoleucine ILE I C5H5N5 C4H4N2O2 C4H4N2O2 C13H13N9O4
UGC Cysteine CYS C C4H4N2O2 C5H5N5O1 C4H5N3O1 C13H14N10O4
GUG Valine VAL V C5H5N5O1 C4H4N2O2 C5H5N5O1 C14H14N12O4
UUU Phenylalanine PHE F C4H4N2O2 C4H4N2O2 C4H4N2O2 C12H12N6O6
CCG Proline PRO P C4H5N3O1 C4H5N3O1 C5H5N5O1 C13H15N11O3
GUG Valine VAL V C5H5N5O1 C4H4N2O2 C5H5N5O1 C14H14N12O4
AAG Lysine LYS K C5H5N5 C5H5N5 C5H5N5O1 C15H15N15O1
CCU Proline PRO P C4H5N3O1 C4H5N3O1 C4H4N2O2 C12H14N8O4
ACA Threonine THR T C5H5N5 C4H5N3O1 C5H5N5 C14H15N13O1
AUC Isoleucine ILE I C5H5N5 C4H4N2O2 C4H5N3O1 C13H14N10O3
U






U






CCU Proline PRO P C4H5N3O1 C4H5N3O1 C4H4N2O2 C12H14N8O4
AUA Isoleucine ILE I C5H5N5 C4H4N2O2 C5H5N5 C14H14N12O2
UUU Phenylalanine PHE F C4H4N2O2 C4H4N2O2 C4H4N2O2 C12H12N6O6
GAG Glutamic acid GLU E C5H5N5O1 C5H5N5 C5H5N5O1 C15H15N15O2
AUU Isoleucine ILE I C5H5N5 C4H4N2O2 C4H4N2O2 C13H13N9O4
GUC Valine VAL V C5H5N5O1 C4H4N2O2 C4H5N3O1 C13H14N10O4
AUA Isoleucine ILE I C5H5N5 C4H4N2O2 C5H5N5 C14H14N12O2
GUC Valine VAL V C5H5N5O1 C4H4N2O2 C4H5N3O1 C13H14N10O4
GUG Valine VAL V C5H5N5O1 C4H4N2O2 C5H5N5O1 C14H14N12O4
GUU Valine VAL V C5H5N5O1 C4H4N2O2 C4H4N2O2 C13H13N9O5
AUC Isoleucine ILE I C5H5N5 C4H4N2O2 C4H5N3O1 C13H14N10O3
GAC Aspartic acid ASP D C5H5N5O1 C5H5N5 C4H5N3O1 C14H15N13O2
C









Wuhan Codon Sequence Compared To Subsequent Codons
Arranged By Order-of-appearance
In The Nucleotides of
Wuhan: NC_045512.2
vs
MT324062.1 South Africa
Row Wuhan
Codon
Comp.
Codon
Match
1 AUG AUG Y
2 CAU CAU Y
3 UUG UUG Y
4 CAU CAU Y
5 AGG AGG Y
6 CUG CUG Y
7 CUC CUC Y
8 UUG UUG Y
9 UAC UAC Y
10 UCU UCU Y
11 CUC CUC Y
12 UUG UUG Y
13 CUG CUG Y
14 CUC CUC Y
15 CUG CUG Y
16 UAC UAC Y
17 AGA AGA Y
18 AGG AGG Y
19 CUA CUA Y
20 AUG AUG Y
21 UUA UUA Y
22 UCA UCA Y
23 UUG UUG Y
24 AUG AUG Y
25 AUG AUG Y
26 UCG UCG Y
27 AAC AAC Y
28 UCG UCG Y
29 AUG AUG Y
30 UUA UUA Y
31 AGU AGU Y
32 UAG UAG Y
33 UAC UAC Y
34 UAC UAC Y
35 UGA UGA Y
36 UUG UUG Y
37 UAG UAG Y
*** *** *** ***
1 CAG CAG Y
2 GUG GUG Y
3 GAU GAU Y
4 CAA CAA Y
5 UUU UUU Y
6 CCC CCC Y
7 GCA GCA Y
8 AAA AAA Y
9 AAA AAA Y
10 AUU AUU Y
11 UGC UGC Y
12 GUG GUG Y
13 UUU UUU Y
14 CCG CCG Y
15 GUG GUG Y
16 AAG AAG Y
17 CCU CCU Y
18 ACA ACA Y
19 AUC AUC Y
20 U U Y
21 U U Y
22 CCU CCU Y
23 AUA AUA Y
24 UUU UUU Y
25 GAG GAG Y
26 AUU AUU Y
27 GUC GUC Y
28 AUA AUA Y
29 GUC GUC Y
30 GUG GUG Y
31 GUU GUU Y
32 AUC AUC Y
33 GAC GAC Y
34 C C Y