This is an appendix to: Quantum Biology - 11
17) Codon Usage Bias:
About: Thogoto virus segment 5, complete sequence (1418bp)
VERSION: NC_006507.1
CODONS & LOCATIONS:
GCT: 24,201,330,443,500,560,615,735,746,782,830,919,1064,
1243,1309
GCT count: 15
GCC: 49,204,259,474,515,530,599,658,738,758,801,819,899,
1009,1027,1097,1110,1141,1177,1209,1221,1270,1327,
1356,1405
GCC count: 25
GCA: 2,12,68,127,135,264,321,356,375,419,454,487,511,637,
647,664,684,750,825,1000,1036,1153,1201,1214,1363
GCA count: 25
GCG: 175,270,808,855,895,964,1324
GCG count: 7
CGT: 431,536,641,779,787,1150,1238
CGT count: 7
CGC: (0)
CGA: 104,139,284,343,767,839,871,888,1082,1120,1317
CGA count: 11
CGG: 46,185,479,527,630,644,668,762,995,1061,1379
CGG count: 11
AGA: 29,34,61,80,88,97,121,219,228,292,385,397,404,446,
466,494,505,556,566,580,595,605,634,673,703,862,865,
877,902,907,931,955,968,983,1012,1039,1116,1124,1144,
1205,1260,1265,1273,1334
AGA count: 44
AGG: 114,178,326,352,439,519,711,811,1018,1054,1127,1137,
1169,1297,1321
AGG count: 15
AAT: 20,149,197,254,316,346,424,570,621,661,1021,1078,1191,
1342
AAT count: 14
AAC: 7,64,159,171,213,216,304,310,393,590,693,771,804,881,
927,1049,1188,1235,1304,1401
AAC count: 20
GAT: 107,110,237,449,626,689,797,914,1251,1384,1410
GAT count: 11
GAC: 39,75,117,165,222,281,297,339,1156,1284,1301
GAC count: 11
TGT: 71,100,207,415,524,847,947,991,1331,1375,1390
TGT count: 11
TGC: 124
TGC count: 1
CAA: 17,58,94,146,401,491,577,587,653,678,1093,1132,1166,
1254,1396
CAA count: 15
CAG: 232,696,944,961
CAG count: 4
GAA: 273,1103
GAA count: 2
GAG: 83,717,976,1352
GAG count: 4
GGT: 247,361,1003,1030,1090,1228,1337
GGT count: 7
GGC: (0)
GGA: 1015
GGA count: 1
GGG: 267,707,822,844,988
GGG count: 5
CAT: 191,194,336,367,410,730,923,938,1058,1280,1369
CAT count: 11
CAC: 142,168,307,434,483,540,549,574,774,793,1070,1196,
1359
CAC count: 13
ATT: 162,300,814,950
ATT count: 4
ATC: 42,364,608,725
ATC count: 4
ATA: 753
ATA count: 1
CTT: 130,372,378,462,543,602,1073,1159,1162,1183
CTT count: 10
CTC: 52,55,389,458,546,721,742,1045,1231,1415
CTC count: 10
CTA: 381,470,885,935,1247,1287,1313
CTA count: 7
CTG: 156,225,835,972,1225,1348
CTG count: 6
TTA: 181,277,850
TTA count: 3
TTG: 552,700,1024
TTG count: 3
AAA: 1172,1290
AAA count: 2
AAG: 240,681
AAG count: 2
ATG: 858
ATG count: 1
TTT: 892,979,1387
TTT count: 3
TTC: 250,313,1393
TTC count: 3
CCT: 612,650,1180
CCT count: 3
CCC: 152,428,584
CCC count: 3
CCA: 563,941,958,1113
CCA count: 4
CCG: 497
CCG count: 1
TCT: 533,868,1006,1100,1107,1147,1218
TCT count: 7
TCC: 91,1345
TCC count: 2
TCA: (0)
TCG: (0)
AGT: 287,910,1042,1276
AGT count: 4
AGC: (0)
ACT: 244,1033,1087
ACT count: 3
ACC: 790,1372
ACC count: 2
ACA: 210,349,508,874,1366
ACA count: 5
ACG: (0)
TGG: 714,1294
TGG count: 2
TAT: (0)
TAC: 407
TAC count: 1
GTT: 1067
GTT count: 1
GTC: 188,333,618,1257
GTC count: 4
GTA: (0)
GTG: (0)
TAA: (0)
TAG: (0)
TGA: (0)
18) Codon Usage Bias:
About: Human astrovirus, complete genome (6813bp)
VERSION: NC_001943.1
CODONS & LOCATIONS:
GCT: 29,111,187,218,301,321,416,464,571,647,703,736,743,
854,938,1024,1077,1124,1142,1265,1333,1500,1643,1682,
1811,1870,1891,1898,1955,2035,2241,2289,2698,2767,
2780,2910,3049,3088,3163,3169,3262,3485,3569,3638,
3874,3886,3954,4088,4208,4218,4222,4293,4376,4718,
4753,4826,4986,4993,5101,5120,5133,5147,5283,5350,
5360,5369,5372,5377,5460,5469,5487,5498,5627,5825,
5907,5918,6167,6237,6292,6309,6362,6374,6580,6619,
6747
GCT count: 85
GCC: 22,100,410,455,523,529,612,650,767,775,782,878,882,
1104,1116,1283,1540,1850,1913,2366,2394,2488,2524,
2533,2548,2624,2638,2644,2720,2834,2854,2872,2916,
2940,2963,3023,3080,3454,3505,3590,3767,3975,4038,
4113,4119,4271,4307,4315,4422,4445,4464,4508,4519,
4740,4873,5150,5245,5256,5386,5441,5512,5690,5700,
5749,5757,5867,5873,5886,5930,5982,6053,6065,6172,
6256,6262,6548,6636,6714,6720,6725
GCC count: 80
GCA: 89,144,152,160,329,475,566,607,654,707,713,751,861,
908,1028,1040,1049,1062,1130,1150,1154,1173,1226,1242,
1313,1339,1391,1443,1460,1463,1476,1556,1582,1592,
1676,1679,1690,1695,1712,1719,1742,1775,1829,1925,
1958,2012,2063,2098,2220,2351,2383,2574,2579,2663,
2744,2756,2777,2789,2896,3045,3121,3178,3232,3310,
3322,3441,3495,3519,3585,3661,3801,4025,4064,4144,
4234,4266,4285,4290,4332,4343,4380,4393,4425,4428,
4573,4610,4625,4631,4665,4728,4747,4760,4820,4904,
4940,5015,5086,5219,5264,5279,5312,5344,5516,5523,
5529,5532,5544,5611,5621,5651,5708,5777,5806,5890,
5953,5968,6104,6218,6274,6317,6560,6569,6632,6642,
6647,6671,6675,6680,6683,6702
GCA count: 130
GCG: 433,499,1351,1523,1531,1980,2038,2119,2922,2928,2936,
2944,3188,3481,3566,3807,4225,4278,4527,4682,5306,
5554,5630,6047,6440,6544,6565,6598,6659,6717
GCG count: 30
CGT: 61,155,232,496,1112,1182,1220,1259,1372,2021,2192,
2692,3715,4297,4448,4535,4550,4556,4708,4907,5309,
5465,5674,5682,6196,6497,6520
CGT count: 27
CGC: (0)
CGA: 278,1176,1252,1366,1543,1929,2152,2165,2370,2398,2410,
2599,2706,2770,2823,3012,3054,3525,3627,3978,5008,
5060,5267,5910,6349,6430,6436,6586,6737
CGA count: 29
CGG: 94,337,533,1729,1737,1766,2651,3063,3196,3971,4522,
4648,4926,5056,5614,6627
CGG count: 16
AGA: 4,43,127,236,343,426,445,448,510,526,543,615,669,679,
695,739,779,794,892,1087,1107,1329,1405,1595,1611,
1618,1822,1876,1920,1963,1968,2006,2025,2082,2091,
2111,2129,2158,2176,2196,2215,2232,2263,2278,2314,
2404,2439,2443,2455,2500,2538,2541,2702,2727,2733,
2859,2862,2892,2913,2980,2999,3033,3144,3204,3214,
3239,3294,3334,3360,3395,3399,3489,3500,3681,3708,
3727,3903,3907,3920,3945,3992,4057,4318,4326,4329,
4364,4468,4482,4499,4505,4514,4620,4674,4935,5079,
5125,5185,5248,5317,5321,5332,5447,5453,5494,5589,
5639,5721,5772,5848,6086,6091,6288,6336,6367,6388,
6391,6403,6409,6417,6424,6433,6460,6475,6478,6489,
6493,6667,6772,6808
AGA count: 129
AGG: 203,306,352,423,507,872,932,1211,1247,1275,1298,1345,
1387,1417,1423,1429,1506,1527,1548,1656,1725,1807,
1860,2031,2086,2105,2134,2182,2616,2800,2813,2851,
2868,2932,3007,3346,3357,3410,3413,3424,3472,3477,
3603,3688,3810,3989,4046,4238,4253,4351,4356,4407,
4442,4460,4511,4580,4587,4597,4713,4756,4846,4894,
4900,4979,5095,5098,5140,5212,5413,5416,5539,5549,
5608,5661,5781,5973,6015,6044,6123,6314,6446,6529,
6554,6590,6732
AGG count: 85
AAT: 73,83,134,148,195,206,377,538,556,559,683,754,826,
952,1054,1138,1268,1307,1481,1493,1602,1652,1758,1819,
1866,2047,2051,2056,2296,2335,2359,2389,2451,2496,
2584,2592,2671,2689,2820,2903,2947,2973,2977,3059,
3098,3110,3129,3273,3277,3298,3338,3420,3427,3510,
3542,3558,3598,3607,3684,3694,3703,3740,3763,3814,
3840,3895,4099,4140,4167,4184,4415,4418,4437,4455,
4473,4493,4539,4568,4793,4800,4832,4950,5012,5044,
5065,5189,5233,5236,5240,5354,5399,5558,5580,5695,
5705,5711,5732,5765,5878,5940,6146,6191,6250,6253,
6277,6485,6532,6538,6691,6695,6782,6795,6804
AAT count: 113
AAC: 47,77,80,117,181,265,313,396,413,486,620,623,664,676,
716,721,761,989,1019,1033,1094,1204,1294,1383,1456,
1564,1588,1672,1786,1790,1902,1907,1944,1947,2123,
2142,2169,2339,2355,2374,2377,2418,2448,2463,2466,
2493,2508,2511,2553,2566,2716,2828,2843,2878,3002,
3039,3069,3125,3228,3244,3255,3365,3515,3579,3611,
3648,3671,3751,3754,3834,3837,3847,3850,3859,3963,
4105,4122,4157,4199,4388,4399,4502,4559,4584,4605,
4655,4697,4859,4911,4956,5000,5115,5153,5159,5168,
5182,5287,5290,5433,5507,5569,5594,5598,5714,5718,
5736,5800,5856,5903,5937,5960,5963,6004,6020,6023,
6070,6074,6201,6208,6212,6344,6502,6514,6524
AAC count: 124
GAT: 17,163,224,229,244,289,355,400,470,514,553,589,643,
731,1255,1513,1732,1988,2042,2189,2207,2255,2258,2273,
2282,2285,2306,2309,2321,2426,2612,2621,2666,2682,
2992,2995,3106,3172,3208,3219,3250,3402,3433,3444,
3643,3844,3982,3999,4073,4177,4372,4919,4982,5223,
5744,5921,6062,6109,6129,6161,6359,6470,6799
GAT count: 63
GAC: 58,122,166,429,638,689,973,1016,1162,1262,1319,1426,
1448,1577,1754,1832,1997,2249,2345,2606,2656,3133,
3286,3457,3633,3804,3899,3910,3928,3949,4060,4281,
4300,4642,4804,4964,4974,5021,5031,5203,5566,5789,
5834,5956,6001,6142,6230,6295,6341,6377,6443,6452,
6535,6541,6614
GAC count: 55
TGT: 38,199,283,286,384,772,799,843,847,865,921,978,1004,
1074,1099,1157,1188,1192,1195,1208,1231,1279,1288,
1375,1397,1468,1471,1489,1497,1568,1628,1648,1663,
1751,1770,1933,1975,2002,2137,2430,2906,3158,3449,
3732,3747,3771,3933,4007,4028,4054,4076,4084,4095,
4116,4151,4256,4260,4369,4402,4564,4591,4616,4685,
4702,4744,4773,4840,5164,5200,5380,5428,5476,5502,
5563,5785,5830,5899,5925,5944,5985,6078,6138,6157,
6281,6622,6662,6761,6767
TGT count: 88
TGC: 604
TGC count: 1
CAA: 215,275,406,519,700,1363,1608,1873,2075,2095,2348,
2380,2435,2485,2530,2686,2695,2773,2810,2838,2848,
2875,3085,3354,3678,3712,4164,4361,4531,4547,4602,
5005,5176,5192,5882,5979,6595
CAA count: 37
CAG: 35,1170,1635,1746,1842,2116,3154,3533,3826,3871,4213,
4411,4476,4488,4660,4733,4763,5271,5337,5754,5949,
6380,6639
CAG count: 23
GAA: 141,451,491,547,1272,1336,1520,1846,1880,2018,2179,
2330,2476,2521,2753,2786,3307,3370,3562,3718,3790,
4102,4132,4725,4777,4783,5618,6482,6711
GAA count: 29
GAG: 748,1359,3622,3880,3995,4432,4679,5864,6031,6266,6603,
6728
GAG count: 12
GGT: 11,14,178,239,260,296,349,599,789,887,898,926,982,
1000,1145,1348,1574,1666,1687,1763,1797,2102,2108,
2228,2235,2299,2303,2473,2518,2792,3317,3380,3538,
3548,3551,3594,3743,3787,3823,3855,3866,4032,4813,
4817,4835,4849,4890,4931,4970,4989,5110,5130,5173,
5347,5403,5421,5424,5636,5657,5728,5810,5838,5893,
6008,6082,6132,6179,6184,6241,6323,6329,6651,6741
GGT count: 73
GGC: 4750
GGC count: 1
GGA: 563,831,1084,2155,2797,2900,2925,3917,4043,4196,4263,
5253,5687,6427,6688
GGA count: 15
GGG: 7,596,2292,2589,3077,5444,6059,6164
GGG count: 8
CAT: 256,324,387,576,724,785,815,868,912,957,1081,1185,
1198,1216,1237,1378,1537,1707,1781,1816,1838,1854,
2067,2199,2212,2504,2556,2888,2985,3074,3225,3313,
3326,3405,3462,3582,3618,3675,3699,3736,3782,3818,
4017,4192,4230,4339,4944,5038,5073,5229,5394,5437,
5644,5803,5845,5859,6096,6150,6226,6245,6326,6412,
6457,6610,6656,6705,6788
CAT count: 67
CAC: 68,253,371,672,903,917,949,962,967,993,1408,1699,1801,
1941,2415,2421,2562,2648,2884,2954,3342,3468,3528,
3554,3656,3795,4002,4092,4148,4187,4243,4323,4452,
4594,4669,4854,4864,4870,4996,5048,5052,5092,5137,
5226,5296,5299,5326,5383,5572,5584,5792,5815,5842,
6100,6271,6306,6463,6577,6785
CAC count: 59
ATT: 50,270,478,502,807,857,1008,1011,1036,1121,1135,1301,
1369,2225,2317,2633,2711,2736,2761,2958,2966,3281,
3331,3387,3890,4170,4688,4767,4788,4897,5104,5206,
5259,5760,6135,6777
ATT count: 36
ATC: 812,1043,1067,1659,3094,3149,3185,3200,3266,3436,4051,
4914,5197,5365,5481,5796,5933,6222,6298
ATC count: 19
ATA: 103,108,316,1451,1551,1623,1983,2325,2458,2723,2739,
3652,4613,5822,6302,6352,6557,6607
ATA count: 18
CTT: 247,390,419,482,686,692,758,851,895,1058,1435,1485,
1561,1703,2060,2126,2147,2173,2186,2204,2595,2678,
2988,3019,3028,3101,3182,3376,3391,3615,3666,3760,
3775,3798,3913,3968,4020,4080,4108,4160,4180,4248,
4542,4637,4878,4959,4967,5276,5724,5741,6037,6355,
6752,6755
CTT count: 54
CTC: 54,210,380,437,461,661,1090,1166,1857,2730,2807,3016,
3141,3757,4127,4275,4336,4577,4691,4694,4807,4843,
5035,5329,5391,5519,5535,5678,6370,6506,6509,6764
CTC count: 32
CTA: 114,171,174,358,710,820,944,1950,2072,2269,2481,3269,
3351,3778,3924,3959,4204,4881,4884,5303,5576,5601,
5990,6153
CTA count: 24
CTG: 467,1413,1440,1794,1917,2238,3042,3236,3290,3304,3630,
4304,4722,5027,5457,6187,6708
CTG count: 17
TTA: 64,374,840,996,1046,1394,1401,1598,1638,1938,2266,
2569,2747,2817,3117,3465,3572,3939,4923,4947,5143,
5409,5473,5667,5976,6034,6040,6117,6204,6384,6791
TTA count: 31
TTG: 26,138,333,1356,4070,4347,4737
TTG count: 7
AAA: 184,1304,1420,1894,1971,2078,2386,3416,3575,5913,5995,
6233
AAA count: 12
AAG: 2469,2514,2627,2660,2831,3721,4135,5215,5670,6112
AAG count: 10
ATG: 86,309,935,986,1223,1503,2015,3986,5082,5341,6285,
6333
ATG count: 12
TTT: 130,764,929,1234,1316,1322,1325,1432,1510,2342,2602,
2630,2803,2950,3091,3113,3136,3193,3829,3862,3877,
3883,5107,5633,5851,6011,6259,6449
TTT count: 28
TTC: 803,1070,1669,1716,1835,3166,4310,5818,6466,6572,6583,
6758
TTC count: 12
CCT: 593,1571,2246,2363,2750,3259,3384,4174,4705,5070,5654,
5870,6028,6176,6699
CCT count: 15
CCC: 191,361,441,1615,1722,1825,6120
CCC count: 7
CCA: 1,1179,2865,4770,5156,5484,5491,5624,5648
CCA count: 9
CCG: 5526
CCG count: 1
TCT: 579,1910,3430,4823,5018,5605,6050,6320,6517
TCT count: 9
TCC: 250,1585,2919,4385
TCC count: 4
TCA: 1632,4479,4485,4496,4652,4797
TCA count: 6
TCG: (0)
AGT: 657,728,1993,2407,2674,3936,4396,4645,5664,5998
AGT count: 10
AGC: 875,2641,3492,6811
AGC count: 4
ACT: 293,635,1201,2009,2559,3211,3247,5896,6056
ACT count: 9
ACC: 458,626,1291,2401,2970,3036,3066,4634,5024,5293,5450
ACC count: 11
ACA: 403,1127,3222,4628,5076,5357,6215,6551,6744
ACA count: 9
ACG: (0)
TGG: 1804,1863,2609,3175,3691,3942
TGG count: 6
TAT: 32,221,970,1517,1605,2162,2252,2527,2783,4810
TAT count: 10
TAC: 2881,3301,3522,3724,4867,6406,6421
TAC count: 7
GTT: 1310,4780,4829,4887,5089
GTT count: 5
GTC: 941,1342,1778,4553,5179
GTC count: 5
GTA: 1534,3373
GTA count: 2
GTG: 346,550,2544,3545,5768,6126
GTG count: 6
TAA: 340,4035,4154
TAA count: 3
TAG: 4067,5406
TAG count: 2
TGA: 97,393,823,2028,2764,4953,5041,5209
TGA count: 8
19) Codon Usage Bias:
About: Hepatitis A virus (wild-type) RNA, complete genome (7478bp)
VERSION: M14707.1
CODONS & LOCATIONS:
GCT: 86,93,139,211,235,253,300,361,398,419,554,565,587,
650,858,900,1007,1020,1080,1182,1204,1308,1395,1419,
1557,1650,1653,1671,1767,1773,1889,1932,2072,2118,
2172,2187,2310,2358,2733,2757,2766,2835,2991,3048,
3177,3309,3321,3384,3540,3593,3638,3720,3788,3815,
3938,4070,4281,4444,4527,4800,4848,4928,5034,5089,
5124,5133,5156,5217,5405,5408,5424,5499,5625,5712,
5868,6002,6063,6081,6099,6159,6258,6350,6372,6495,
6504,6552,6597,6687,6696,6777,6812,6870,6875,6957,
7080,7089,7109,7230,7257,7269,7282
GCT count: 101
GCC: 73,80,246,259,267,441,501,608,668,684,2061,2576,2624,
2676,2700,3009,3128,3243,3348,3543,4167,4179,4400,
4496,4585,4659,5246,5382,5414,5618,5635,5689,5814,
6068,6231,6243,6532,6848
GCC count: 38
GCA: 159,293,347,530,594,703,801,818,846,999,1038,1073,
1113,1123,1218,1255,1442,1536,1542,1882,1919,1923,
1941,1964,2037,2151,2346,2388,2494,2655,2671,2847,
2907,3037,3045,3121,3272,3351,3355,3596,3627,3690,
3888,3919,3959,4059,4111,4192,4199,4335,4380,4423,
4458,4464,4567,4682,4707,4758,4768,4863,5028,5136,
5143,5183,5194,5252,5271,5307,5594,5640,5769,5847,
5857,5892,6060,6604,6726,6772,6806,7072,7179,7212,
7217,7241,7277
GCA count: 85
GCG: 272,459,462,5785
GCG count: 4
CGT: 338,1588,1983,2114,5159
CGT count: 5
CGC: (0)
CGA: 1741,4390,5071,5827,7005
CGA count: 5
CGG: 16,26,402,953,3577,6656,7123,7186
CGG count: 8
AGA: 5,193,326,435,483,575,628,747,763,815,933,961,964,
974,1098,1116,1141,1201,1275,1302,1322,1356,1367,1422,
1430,1476,1504,1532,1539,1546,1571,1676,1786,1803,
1808,1857,1895,1977,2013,2044,2094,2130,2213,2249,
2254,2264,2294,2316,2392,2404,2429,2436,2447,2522,
2630,2666,2720,2772,2787,2803,2808,2869,2873,2902,
2963,2972,2988,3053,3081,3086,3092,3099,3106,3116,
3144,3149,3165,3185,3297,3318,3402,3411,3424,3434,
3451,3533,3613,3633,3668,3699,3710,3802,3873,3972,
3994,4014,4114,4117,4142,4208,4234,4263,4323,4338,
4348,4428,4441,4504,4532,4598,4613,4647,4672,4871,
4959,5009,5198,5267,5282,5323,5348,5353,5367,5396,
5437,5441,5580,5605,5622,5698,5705,5728,5775,5842,
5909,5932,5947,6009,6013,6134,6137,6143,6193,6218,
6301,6315,6366,6376,6449,6459,6467,6492,6608,6618,
6651,6659,6677,6720,6732,6964,6980,7015,7052,7063,
7096,7143,7160,7167,7173,7221,7250,7297,7330,7334,
7343,7350,7374,7380
AGA count: 178
AGG: 53,167,232,305,390,450,506,551,591,691,699,709,752,
811,840,904,919,970,1088,1165,1282,1385,1488,1567,
1594,1853,1958,2022,2048,2225,2303,2336,2374,2478,
2589,2651,2693,2725,2784,2792,3181,3216,3226,3268,
3327,3330,3442,3553,3658,3674,3841,3987,4054,4087,
4120,4174,4238,4285,4436,4603,4634,4669,4675,4753,
4783,4999,5165,5203,5222,5319,5539,5557,5609,5686,
5789,5873,6239,6248,6298,6578,6590,7450
AGG count: 82
AAT: 20,97,146,152,177,314,370,422,569,614,728,731,734,
821,829,883,979,1042,1057,1068,1130,1251,1266,1330,
1345,1352,1374,1410,1469,1479,1483,1515,1524,1579,
1610,1668,1694,1730,1737,1756,1843,1892,1907,1946,
2136,2164,2324,2369,2416,2508,2514,2517,2559,2639,
2910,2916,2929,2968,3006,3025,3029,3041,3195,3221,
3248,3278,3281,3377,3417,3427,3437,3487,3504,3536,
3546,3606,3617,3621,3662,3686,3733,3773,3809,3824,
3832,3837,3860,3882,3935,3954,3962,4081,4104,4131,
4186,4202,4219,4258,4277,4296,4301,4454,4472,4558,
4643,4703,4716,4725,4815,4824,4836,4842,4857,4895,
4908,4955,4978,5003,5019,5080,5098,5109,5210,5263,
5303,5379,5450,5492,5505,5518,5567,5631,5661,5678,
5733,5801,5833,5877,5882,5896,5912,5922,5936,5951,
5981,5985,6051,6086,6095,6164,6177,6182,6251,6323,
6339,6380,6390,6408,6454,6481,6524,6536,6573,6631,
6644,6786,6845,6879,6884,6891,6894,6900,6992,7023,
7046,7126,7152,7196,7208,7245,7254,7300,7357,7431,
7442,7476
AAT count: 186
AAC: 280,355,409,455,490,498,597,738,925,949,1146,1162,
1263,1388,1451,1643,1690,1763,1970,2019,2091,2157,
2234,2237,2282,2285,2313,2366,2422,2540,2552,2582,
2601,2753,2778,2796,3000,3139,3160,3483,3564,3725,
3829,3847,3944,4005,4047,4146,4150,4225,4351,4359,
4448,4480,4519,4590,4595,4653,4739,4795,4853,4963,
4968,5065,5206,5240,5294,5480,5654,5666,5744,5756,
5999,6041,6264,6437,6488,6641,6745,6755,6819,7066,
7114,7193,7227,7427
AAC count: 86
GAT: 62,288,379,438,447,465,527,540,619,634,824,837,879,
910,945,989,1002,1047,1171,1175,1447,1472,1563,1584,
1604,1821,1950,1994,2193,2217,2328,2661,2706,2853,
2887,2925,3032,3072,3075,3312,3337,3381,3407,3420,
3464,3518,3525,3630,3643,3682,3740,3748,3891,3977,
4031,4182,4250,4290,4326,4366,4393,4542,4546,4575,
4578,4827,4860,4887,4892,4899,4919,4923,5013,5016,
5022,5258,5274,5359,5400,5453,5526,5533,5552,5583,
5613,5736,5751,5763,5928,6036,6047,6090,6104,6147,
6207,6210,6225,6255,6270,6283,6318,6333,6401,6417,
6423,6501,6516,6615,6627,6647,6672,6693,6716,6984,
7008,7020,7029,7034,7164,7337,7340,7365,7417
GAT count: 123
GAC: 57,321,512,544,646,654,783,804,851,1197,1226,1349,
1382,1631,1713,1733,1749,2001,2099,2636,2745,2865,
3229,3305,3368,3431,3447,3764,3966,4245,4555,4764,
4771,4903,4946,4973,5311,5651,6308,7039,7076,7092,
7130,7389,7407
GAC count: 45
TGT: 133,142,181,217,329,351,478,547,584,624,657,674,679,
742,767,793,875,941,1093,1179,1229,1246,1508,1519,
1549,1782,1789,1794,1814,1864,1869,1874,1898,1938,
2078,2085,2126,2258,2351,2455,2491,2545,2605,2614,
2737,2839,2935,2946,2953,2957,3013,3190,3232,3302,
3362,3455,3568,3583,3646,3677,3696,3761,3767,3785,
3792,3797,3821,3868,3900,3915,4211,4268,4312,4329,
4406,4410,4476,4490,4523,4620,4630,4638,4748,4831,
4876,4881,4990,5102,5174,5237,5363,5411,5510,5543,
5546,5657,5674,5720,5759,5805,5864,5888,5976,6131,
6293,6395,6411,6428,6441,6475,6507,6529,6593,6662,
6822,6825,6833,6837,6864,6904,6911,6951,6972,7049,
7100,7313,7323,7395,7404,7421,7455
TGT count: 131
TGC: 264
TGC count: 1
CAA: 486,958,1134,1607,1752,1827,2029,2205,2271,2343,2465,
2750,3170,3240,3478,3497,3610,3932,4078,4254,4469,
4729,4735,4811,4868,5114,5249,5919,5996,6174,6311,
6445,6484,6803,6920,7139
CAA count: 36
CAG: 522,832,889,1336,1493,1656,1681,1708,2380,2610,2689,
3067,3904,4377,4623,4931,5046,5278,5289,5334,5766,
5973,6198,6621,6940,6954,7117,7260,7317,7392,7471
CAG count: 31
GAA: 40,335,1032,2069,2291,2300,2321,3125,3198,3284,3358,
3468,3573,4098,4215,4500,4788,5393,5708,5779,5940,
5957,6336,6405,6470,6723,6931
GAA count: 27
GAG: 474,535,773,1437,2052,3060,3652,3693,3981,4986,5037,
5152,5341,5389,5457,5964,6156,6355,6740,7056,7233,
7287
GAG count: 22
GGT: 10,49,162,276,393,471,777,855,1052,1187,1194,1209,
1242,1271,1305,1363,1511,1599,1686,2277,2571,2593,
2680,2717,2818,2856,2862,2891,3389,3493,3601,3864,
3897,4009,4241,4304,4385,4609,4720,4993,5061,5120,
5170,5225,5315,5330,5372,5502,5739,5808,5819,5900,
5990,6189,6328,6342,6546,6666,6729,6840,6856,7157,
7201,7264,7369
GGT count: 65
GGC: (0)
GGA: 297,1576,2355,2475,2763,2844,3089,3157,3941,5130,5300,
5702
GGA count: 12
GGG: 318,631,665,1168,1342,3399,4431,5811
GGG count: 8
CAT: 46,201,285,366,493,518,602,642,720,788,894,993,1017,
1029,1104,1108,1222,1239,1288,1617,1663,1848,1912,
2040,2184,2288,2407,2439,2443,2451,2459,2484,2503,
2530,2568,2815,2881,2919,2995,3064,3111,3460,3513,
3753,3756,3857,3878,4037,4124,4272,4308,4344,4571,
4776,4804,4915,4943,4982,5056,5068,5232,5421,5644,
5724,5824,6020,6027,6032,6044,6121,6274,6360,6398,
6463,6567,6585,6709,6737,6760,6765,6794,7400,7414
CAT count: 83
CAC: 69,197,208,341,386,913,1153,1298,1314,1327,1405,1465,
1838,2057,2363,2684,2960,3020,3208,3782,4034,4315,
4821,5692
CAC count: 24
ATT: 125,149,468,756,807,865,1061,1260,1293,1370,1377,1638,
1704,1779,1953,2064,2154,2643,2646,2742,2799,2821,
2827,2898,2950,2980,3490,3556,3580,3717,3850,3894,
3909,4062,4066,4134,4170,4414,4483,4581,4606,4761,
5464,5488,5514,5586,5601,5925,6118,6234,6347,6386,
6498,6541,6555,6562,6600,6635,6799,6888,6907,7170,
7182,7306,7309,7460
ATT count: 66
ATC: 1234,1634,1744,2143,2377,2432,2579,3017,4231,4451,
4509,5084,5285,5830,5850,6110,6261,6749,6783,7294
ATC count: 20
ATA: 89,190,1064,1215,1278,1399,2026,2831,3262,4075,4332,
4418,4513,4549,5179,5228,5838,7346
ATA count: 18
CTT: 36,105,111,118,130,173,220,223,227,243,344,375,382,
414,426,559,661,724,780,796,862,871,886,928,986,1023,
1156,1402,1458,1552,1627,1817,2008,2107,2178,2497,
2548,2697,2713,2760,2824,2938,3056,3204,3255,3343,
3372,3393,3528,3590,3703,3707,3950,4091,4137,4318,
4362,4665,4690,4696,4711,4936,5050,5148,5327,5521,
5716,5793,6071,6222,6289,6383,6669,6702,6780,6947,
7026,7084,7147,7204,7353,7360,7410,7437,7464
CTT count: 85
CTC: 13,186,238,579,639,696,938,967,2005,2102,2555,2563,
2710,3853,3991,4693,4996,5075,5189,5590,5905,5993,
6277,6511,6521,6683,6851,6859,6937,6969,7001,7105
CTC count: 32
CTA: 249,311,429,1012,1150,1462,1498,1624,1927,2110,2200,
2245,2462,2536,2878,3550,3736,4516,5563,5572,5671,
6076,6127,6790
CTA count: 24
CTG: 256,688,1501,1879,1903,1991,2221,2401,2413,2425,2586,
2850,3265,3293,3649,4027,4538,5683,5797,6280,7447
CTG count: 21
TTA: 611,671,868,1318,1416,1426,1621,1860,2197,2385,2470,
2500,2811,2941,3324,3475,3624,3729,3818,3984,4042,
4094,4128,4354,4535,4626,4650,4699,4745,4792,4845,
5444,5467,5483,5968,6023,6170,6201,6433,6712,7060,
7273,7385,7424,7467
TTA count: 45
TTG: 332,358,444,605,907,922,1120,1126,1434,1560,1647,1770,
1799,1974,2160,2209,2859,2884,3103,3154,3334,3414,
3522,3745,4222,4461,4951,5140,5338,5344,5385,5434,
5628,5853,6369,6420,6570,6769,6960,7069,7237,7326
TTG count: 42
AAA: 1698,1916,2306,3096,4153,4164,7042,7189
AAA count: 8
AAG: 2395,3471,3922,5782,6114
AAG count: 5
ATG: 1528,1885,2190,3844,4108,4486,4656,5356,5376,6228,
6267,6976,7377
ATG count: 13
TTT: 77,100,136,204,706,712,982,1077,1339,1360,1659,1724,
1824,1831,1980,2140,2146,2168,2228,2242,2297,2332,
2596,2627,2775,2976,3235,3258,3288,3587,3812,3925,
3928,3998,4189,4195,4564,4616,4685,4807,4912,5040,
5092,5186,5297,5460,5577,5597,6005,6054,6167,6213,
6581,6680,6690,6809,6915,6943,6988,6997,7120,7133,
7290,7303,7434
TTT count: 65
TTC: 1,23,114,214,715,759,1026,1084,1138,1285,1391,1834,
1987,1997,2231,2410,2487,2533,2894,2983,3251,3507,
3559,3655,3713,4001,4050,4779,5006,5043,5053,5417,
5495,5560,5916,6286,7012
TTC count: 37
CCT: 33,66,122,156,1191,1455,1935,2175,3078,3213,4818,6057,
6612,7176
CCT count: 14
CCC: 1591,2122,2268,5213
CCC count: 4
CCA: 1727,3510,4205,4293,5861,6363,6549,6830
CCA count: 8
CCG: (0)
TCT: 515,996,1212,1776,1811,2481,2633,2922,3340,4662,5549,
5885,6414,7136
TCT count: 14
TCC: 108,572,1159,2261,3969,5095,5536,6017,7320
TCC count: 9
TCA: 2034,2511,2730,3003,3912
TCA count: 5
TCG: (0)
AGT: 29,308,1961,2339,3500,3947,4228,4403,4742,4940,5025,
5255,5648,5747,5943,5960,6185,6304,6558,6699,6705,
6934,7224
AGT count: 23
AGC: (0)
ACT: 509,843,1614,2658,2932,3315,3396,5106
ACT count: 8
ACC: 916,1333,6140
ACC count: 3
ACA: 897,2527,2781,3671,6867
ACA count: 5
ACG: (0)
TGG: 770,3806,5162,5477,5530,5772,6478,6624,6752
TGG count: 9
TAT: 1760,2075,2082,2088,2181,3174,3885,5954,6816
TAT count: 9
TAC: 1101,1311,2398,2913,6124
TAC count: 5
GTT: 170,1035,1413,1701,2274,2703,4024,4341,4839,4884,6107,
6204
GTT count: 12
GTC: 43,1967,2769,4732,6897
GTC count: 5
GTA: 3201,4678,5031
GTA count: 3
GTG: 405,2016,2133,3365,4101,4396,4552,5117,5127
GTG count: 9
TAA: 3665,4084,5243,5695,6638
TAA count: 5
TAG: 83,562,4561
TAG count: 3
TGA: 432,2419,3275,3770,4493,5447
TGA count: 6
20) Codon Usage Bias:
About: Influenza C virus (C/Ann Arbor/1/50) P3 gene for polymerase 3, complete cds (2183bp)
VERSION: NC_006309.2
CODONS & LOCATIONS:
GCT: 52,70,155,207,255,362,398,499,502,691,865,1171,1240,
1264,1408,1443,1710,1720,1786,1861,1879,1893,1943,
1975,2083,2128,2175,2181
GCT count: 28
GCC: 37,63,82,452,704,994,1057,1218,1398,1452,1560,1684,
2072,2113
GCC count: 14
GCA: 2,8,46,91,158,235,352,401,493,711,716,747,790,823,
910,985,988,1186,1225,1299,1315,1334,1351,1434,1600,
1780,1916,1956
GCA count: 28
GCG: 659,1484
GCG count: 2
CGT: 327,769
CGT count: 2
CGC: (0)
CGA: 18,114,534,760,1818,2066
CGA count: 6
CGG: 1448
CGG count: 1
AGA: 60,66,76,87,96,99,118,199,220,226,346,430,435,475,
519,549,558,578,644,651,682,819,852,856,862,893,916,
924,977,1000,1032,1054,1067,1074,1092,1107,1125,1140,
1147,1194,1257,1318,1369,1411,1419,1437,1458,1555,
1569,1618,1625,1632,1648,1700,1723,1726,1771,1791,
1808,1826,1841,1851,1873,1885,1938,1961,1991,2022,
2034,2039,2046,2122,2160
AGA count: 73
AGG: 216,310,314,461,514,582,604,672,779,897,939,1041,1044,
1110,1290,1302,1423,1440,1511,1629,1675,1983,2025,
2089
AGG count: 24
AAT: 21,42,123,126,132,138,187,250,323,333,339,371,394,
442,470,537,553,573,599,665,676,686,708,725,732,751,
755,765,786,813,840,873,901,944,964,973,1011,1015,
1021,1047,1098,1121,1129,1160,1168,1229,1246,1250,
1276,1309,1323,1331,1356,1364,1386,1427,1431,1461,
1496,1521,1530,1533,1544,1551,1564,1583,1695,1795,
1846,1857,1904,1924,1934,1951,1965,1971,1996,2000,
2017,2062,2095,2106,2142,2166
AAT count: 84
AAC: 30,231,278,320,342,386,464,523,561,588,633,641,737,
929,1101,1104,1118,1268,1281,1305,1507,1536,1574,1611,
1680,1740,1758,1823,1865,1901,2099
AAC count: 31
GAT: 14,109,169,196,271,355,358,424,505,607,828,847,883,
997,1024,1179,1211,1243,1516,1833,2012,2146,2150
GAT count: 23
GAC: 298,307,782,1086,1201,1359,1465,1604,1705,1747,1927,
1987
GAC count: 12
TGT: 161,166,204,239,259,295,445,527,615,1095,1344,1468,
1590,1672,1729,1765,1829,1948,2050,2069,2103
TGT count: 21
TGC: 1312
TGC count: 1
CAA: 26,148,247,375,438,776,804,836,921,960,1488,1493,1579,
1692,1715,2086,2117,2139
CAA count: 18
CAG: 483,1637,1751
CAG count: 3
GAA: 5,448,610,648,1018,1383,1597,1651,1804,1876
GAA count: 10
GAG: 49,172,180,192,1174,1774,2110
GAG count: 7
GGT: 382,868,1008,1077,1163,1215,1293,1395,1477,1896
GGT count: 10
GGC: 2125
GGC count: 1
GGA: 391,427,816,1051,1254,1287,1328,1645,1755,1838
GGA count: 10
GGG: 11,106,1348
GGG count: 3
CAT: 210,564,567,879,932,951,955,1005,1027,1221,1284,1401,
1501,1734,1761,1811,2003,2153
CAT count: 18
CAC: 142,281,1527,1608,1737
CAC count: 5
ATT: 176,301,365,414,478,591,721,740,991,1113,1374,1473,
1539,1593,1642,1664,1910,2028,2031
ATT count: 19
ATC: 913,947,1271
ATC count: 3
ATA: 79,102,797,1189,1404,1480,1586,1668,2157
ATA count: 9
CTT: 242,274,287,292,490,511,540,543,620,626,810,888,904,
967,1151,1204,1296,1339,1660,1687,1868,1978,2006,2172
CTT count: 24
CTC: 417,1082,1235,1455,1548
CTC count: 5
CTA: 420,455,595,695,772,1061,1157,1768,1798,1920
CTA count: 10
CTG: 1208,1379
CTG count: 2
TTA: 267,530,636,654,668,833,980,1135,1260,1504,1882,2078
TTA count: 12
TTG: 2009,2042,2092
TTG count: 3
AAA: 223,262,317,349,467,585,662,1064,1389,1815,2163
AAA count: 11
AAG: 698,1132,1783,2131
AAG count: 4
ATG: 743,1621,1744
ATG count: 3
TTT: 33,55,145,152,304,379,486,508,1036,2075,2134
TTT count: 11
TTC: 368,629,1197
TTC count: 3
CCT: 794,1657,1968
CCT count: 3
CCC: 800,1071,2169
CCC count: 3
CCA: 679,1144
CCA count: 2
CCG: (0)
TCT: 876,907,1907,1913
TCT count: 4
TCC: 1154
TCC count: 1
TCA: 859,1777
TCA count: 2
TCG: (0)
AGT: 844,1392,1414,1614,1930
AGT count: 5
AGC: (0)
ACT: 496,2178
ACT count: 2
ACC: 546,729,1232
ACC count: 3
ACA: 129,184,936,1089,1890
ACA count: 5
ACG: (0)
TGG: 135,336,458,970,1183
TGG count: 5
TAT: (0)
TAC: 284,623
TAC count: 2
GTT: 807,1801,1854
GTT count: 3
GTC: 1654
GTC count: 1
GTA: 73,1524
GTA count: 2
GTG: (0)
TAA: 701
TAA count: 1
TAG: (0)
TGA: 213,330,570
TGA count: 3
21) Codon Usage Bias:
About: Measles virus (strain Edmonston), complete genome (15894bp)
VERSION: K01711.1
CODONS & LOCATIONS:
GCT: 128,408,639,673,684,811,859,955,976,1101,1109,1225,
1284,1392,1457,1498,1582,1593,1599,1634,1859,1881,
1901,2075,2183,2297,2318,2342,2383,2422,2570,2737,
2812,2824,3103,3106,3121,3147,3201,3223,3307,3331,
3337,3492,3527,3583,3602,3725,3755,3881,3968,4007,
4286,4679,4977,5170,5582,5770,5839,5842,5880,5977,
6012,6060,6066,6075,6116,6154,6161,6168,6201,6318,
6351,6377,6519,6556,6703,6775,6859,6991,7004,7104,
7384,7388,7413,7426,7543,7742,7745,7753,7814,7833,
7876,8069,8138,8149,8223,8230,8239,8314,8345,8366,
8412,8536,8552,8629,8879,8910,8979,9022,9084,9126,
9129,9242,9327,9342,9458,9578,9613,9635,9646,9706,
9842,9864,9963,9978,9992,10079,10098,10109,10140,10156,
10230,10329,10332,10429,10463,10482,10503,10509,10563,
10579,10582,10641,10644,10724,10753,10794,10872,10911,
11007,11187,11263,11279,11318,11330,11468,11505,11508,
11532,11619,11622,11663,11753,11847,11859,11947,12036,
12074,12117,12216,12411,12467,12484,12581,12638,12648,
12674,12678,12905,12945,12975,12994,13020,13052,13244,
13378,13388,13394,13406,13466,13542,13614,13661,13769,
13817,13827,13905,13948,14175,14239,14319,14382,14417,
14490,14520,14524,14532,14584,14653,14771,14818,14912,
14943,14948,14984,15123,15131,15229,15314,15350,15401,
15480,15613,15883
GCT count: 225
GCC: 112,187,306,446,622,658,778,797,907,1114,1166,1270,
1351,1447,1473,1501,1553,1587,1606,1696,1703,1718,
1767,1770,1774,1804,1827,1868,1873,1889,1949,1998,
2208,2449,2468,2516,2599,2642,2768,2774,2924,3015,
3026,3050,3054,3127,3152,3177,3219,3278,3290,3350,
3361,3421,3533,3635,3665,3695,3717,3996,4039,4137,
4171,4367,4454,4464,4493,4501,4515,4550,4554,4561,
4588,4604,4617,4627,4682,4749,4878,4916,4925,4930,
4957,4973,4988,5057,5073,5083,5090,5107,5163,5183,
5207,5227,5245,5321,5482,5606,5634,5821,5833,5854,
5893,5915,6053,6110,6256,6307,6402,6468,6488,6496,
6530,6619,6706,6716,6874,7058,7065,7188,7220,7298,
7430,7460,7488,7581,7696,7840,7978,8162,8566,8641,
8657,8751,8756,8901,8907,8941,9006,9286,9312,9349,
9388,9474,9640,9722,9790,10074,10085,10303,10361,10401,
10457,10589,10597,10831,10900,10965,11054,11080,11236,
11300,11368,11385,11565,11594,11677,12032,12141,12152,
12495,12658,12689,12700,12736,12820,12909,12921,13008,
13032,13042,13480,13696,13707,13834,14107,14313,14339,
14472,14563,14570,14676,14728,14786,14888,14928,14990,
15381,15768,15813
GCC count: 200
GCA: 51,88,133,322,401,457,579,643,670,898,966,1020,1036,
1084,1203,1249,1279,1300,1305,1409,1478,1483,1517,
1540,1563,1602,1612,1811,1819,1823,1851,1907,1910,
1956,1970,1974,1989,2006,2030,2037,2111,2118,2223,
2360,2406,2472,2499,2558,2606,2637,2645,2860,2872,
2883,2913,2963,3003,3020,3182,3189,3410,3468,3523,
3651,3679,3690,3750,3846,3859,3893,3919,3990,4067,
4080,4147,4182,4201,4222,4228,4237,4251,4330,4336,
4356,4364,4390,4459,4558,4568,4594,4640,4705,4738,
4793,4819,4823,4857,4996,5025,5094,5133,5194,5219,
5263,5298,5494,5540,5578,5660,5677,5725,5734,5812,
5858,5863,5935,5944,5956,5961,6230,6242,6415,6485,
6628,6641,6758,6786,6853,6932,6938,6958,7007,7165,
7174,7181,7256,7436,7440,7457,7472,7494,7525,7733,
7763,7989,7992,8019,8101,8124,8159,8269,8357,8444,
8468,8738,8849,9072,9087,9117,9167,9383,9701,10044,
10106,10320,10442,10450,10478,10485,10535,10635,10835,
10896,10939,10976,10992,11112,11115,11150,11205,11271,
11321,11482,11543,11587,11657,11691,11779,11784,11829,
11832,11836,11866,11895,11927,12024,12070,12234,12256,
12285,12372,12389,12408,12444,12459,12463,12499,12570,
12635,12957,13025,13094,13114,13384,13401,13437,13458,
13490,13554,13719,13798,13862,13916,13930,14058,14079,
14145,14169,14190,14350,14353,14374,14409,14437,14441,
14464,14497,14647,14706,14806,14925,14956,15076,15155,
15158,15221,15232,15240,15255,15333,15355,15389,15435,
15502,15506,15535,15548,15828,15837
GCA count: 259
GCG: 302,487,649,1333,1398,1492,1689,1945,2025,2043,2064,
2154,2162,2259,2274,2507,2537,2612,3241,3565,3622,
3647,3864,4032,4543,4572,4585,4799,5099,5238,5273,
5797,5818,5828,5911,6136,6737,7014,8398,8423,8451,
8742,8774,9026,10540,10688,11518,12220,12369,12642,
12669,12731,12749,12772,12938,13155,13342,13704,14017,
14258,14998,15325
GCG count: 62
CGT: 396,891,3046,3744,3903,3927,3953,4403,4448,4650,5475,
5599,6020,6270,6365,6455,6559,6567,6831,7156,7540,
8233,8893,9209,9230,9552,9852,10434,11105,11395,11536,
11886,12914,13110,13325,13780,14200,14797,15488,15647,
15702
CGT count: 41
CGC: 5216
CGC count: 1
CGA: 105,250,384,549,1438,1573,1796,1894,2071,2287,2380,
2418,2573,2626,2668,2691,2785,2953,2971,2983,3367,
3452,3458,3487,3496,3698,3884,4055,4160,4314,4397,
4400,4467,4473,4523,4575,4661,4687,4787,4804,4828,
4942,5013,5037,5125,5231,5256,5281,5292,5354,5385,
5388,5663,5898,6273,6314,6324,6506,6662,6726,6929,
7283,7522,7663,7904,8027,8263,8373,8381,8461,8691,
8857,8962,9289,9330,9541,9650,10675,10694,10750,11076,
11192,11215,11375,11870,12005,12359,12492,12525,12681,
12930,13004,13081,13149,13178,13278,13283,13328,13351,
13631,13964,14021,14045,14156,14266,14309,14399,14720,
14735,14789,14938,15510,15866
CGA count: 113
CGG: 180,268,293,540,680,840,1260,1470,1544,1622,1643,1840,
1856,1980,2309,2454,2461,2479,2529,2586,3083,3133,
3157,3236,3644,3934,3941,3982,4100,4259,4504,4535,
4721,4921,4984,5050,5337,5421,5523,5756,6063,6121,
6204,6259,6535,6573,6589,6719,6753,6801,6896,7076,
7207,7232,7289,7420,7454,7567,7650,8058,8073,8173,
8292,8500,8556,8563,8581,9098,9398,10049,10190,10445,
10497,10712,10719,10931,11173,11294,11613,11973,12092,
12190,12794,12814,12980,13295,13309,14035,14131,14504,
14605,14780,15341,15566,15688,15758,15798
CGG count: 97
AGA: 65,85,145,193,231,256,374,414,425,463,567,582,663,
688,715,736,743,830,894,939,1058,1070,1195,1206,1293,
1322,1330,1345,1385,1416,1433,1443,1454,1462,1495,
1527,1557,1626,1638,1669,1680,1692,1706,1816,1918,
1927,1963,2059,2099,2179,2239,2373,2390,2402,2503,
2510,2532,2700,2710,2719,2755,2796,2799,2815,2839,
2856,3007,3039,3095,3141,3226,3303,3315,3443,3543,
3551,3713,3741,3813,3960,3963,3978,4048,4064,4113,
4117,4120,4165,4218,4240,4267,4270,4304,4339,4347,
4382,4444,4496,4527,4546,4598,4727,4774,4837,4841,
4901,4908,4950,5018,5047,5144,5151,5176,5270,5367,
5415,5431,5438,5552,5670,5689,5698,5719,5744,5752,
5762,5782,5789,5846,5908,5950,5966,5994,6056,6079,
6090,6140,6177,6195,6237,6279,6354,6384,6471,6525,
6675,6686,6771,6790,6821,6902,7032,7051,7259,7309,
7349,7370,7445,7476,7504,7596,7632,7670,7699,7703,
7750,7788,7793,7853,7888,8002,8051,8179,8308,8333,
8386,8406,8454,8649,8746,8830,9034,9103,9158,9188,
9195,9202,9256,9281,9304,9373,9524,9527,9533,9547,
9673,9748,9754,9801,9878,9956,9989,10002,10008,10028,
10127,10134,10235,10276,10293,10311,10381,10679,10730,
10838,10846,10863,10979,11027,11036,11109,11159,11176,
11227,11247,11254,11275,11287,11326,11335,11450,11464,
11515,11557,11608,11625,11634,11698,11776,11787,11804,
11874,12084,12127,12158,12209,12253,12264,12274,12350,
12353,12447,12537,12567,12594,12598,12620,12645,12654,
12722,12757,12858,12889,12896,12918,12951,13202,13207,
13265,13289,13334,13358,13391,13452,13477,13588,13674,
13740,13759,13791,13843,13852,13982,13988,13991,14040,
14127,14135,14225,14275,14280,14286,14344,14388,14423,
14539,14559,14632,14685,14742,14813,14873,14897,14915,
15069,15113,15148,15251,15264,15359,15392,15438,15446,
15456,15573,15598,15626,15637,15652,15668,15676,15733,
15740,15849
AGA count: 324
AGG: 19,57,78,96,124,152,174,277,318,330,360,479,535,557,
590,691,718,766,782,853,1125,1152,1200,1216,1219,1232,
1274,1316,1370,1412,1420,1423,1450,1576,1685,1700,
1749,1756,1936,1941,2049,2169,2233,2236,2339,2365,
2368,2465,2496,2551,2596,2602,2655,2713,2835,2899,
2943,3067,3111,3231,3274,3406,3482,3538,3570,3574,
3616,3632,3671,3817,3830,3897,4020,4110,4196,4326,
4424,4875,4882,5079,5102,5200,5284,5302,5357,5412,
5468,5556,5565,5571,5686,5779,5984,6174,6188,6216,
6246,6332,6423,6606,6657,6763,6834,6869,6878,6910,
6921,6972,6981,7028,7099,7251,7326,7334,7530,7536,
7586,7655,7824,7837,7900,7944,7997,8041,8202,8209,
8215,8242,8430,8478,8486,8587,8662,8700,8733,8778,
8867,8936,9069,9123,9212,9355,9462,9508,9568,9601,
9618,9657,9661,9670,9759,9795,9798,9945,9981,9998,
10113,10205,10271,10344,10394,10514,10520,10627,10653,
10705,10843,10852,10859,10893,10951,10969,11015,11046,
11100,11120,11129,11444,11453,11526,11546,11577,11735,
11826,12018,12172,12288,12326,12405,12440,12504,12508,
12590,12706,12841,13029,13048,13056,13098,13104,13133,
13158,13210,13238,13250,13368,13398,13485,13591,13622,
13748,13802,13813,14099,14120,14261,14297,14323,14459,
14556,14573,14578,14599,14629,14697,14753,14963,15013,
15032,15180,15200,15310,15386,15426,15467,15525,15718,
15730,15778,15818
AGG count: 240
AAT: 30,34,198,222,240,282,327,365,440,494,516,530,561,
627,731,749,816,864,971,1023,1065,1617,1663,1672,1848,
1921,2089,2102,2173,2202,2243,2247,2397,2438,2565,
2618,2683,2705,2779,2792,2803,2851,2876,2974,2978,
3070,3077,3114,3196,3281,3319,3322,3388,3437,3580,
3641,3759,3870,3973,3987,4059,4151,4157,4232,4299,
4311,4413,4486,4635,4967,5041,5372,5425,5448,5529,
5568,5612,5627,5631,5638,5653,5681,5715,5731,5902,
5929,6004,6007,6048,6071,6093,6184,6249,6439,6493,
6615,6622,6633,6670,6841,6850,6881,6996,7021,7088,
7134,7198,7227,7240,7270,7295,7499,7519,7561,7617,
7638,7646,7710,7725,7760,7802,7849,7860,7913,7948,
7982,8054,8114,8191,8253,8351,8361,8401,8437,8542,
8548,8604,8618,8644,8668,8720,8728,8807,8838,8976,
9113,9140,9185,9300,9413,9426,9441,9498,9504,9573,
9610,9772,9845,9869,9950,10053,10067,10166,10223,10338,
10348,10356,10415,10421,10493,10500,10555,10573,10616,
10657,10743,10775,10877,10889,10917,10922,10956,11144,
11241,11283,11412,11420,11553,11648,11694,11702,11738,
11767,11841,11855,11930,11954,11958,12014,12054,12063,
12113,12131,12149,12176,12237,12317,12419,12546,12562,
12603,13035,13086,13126,13169,13182,13241,13434,13445,
13501,13582,13602,13607,13638,13713,13753,13824,13855,
13977,14114,14140,14211,14216,14328,14367,14413,14445,
14475,14483,14501,14552,14661,14679,14701,14757,14823,
14838,14920,14960,14969,15094,15134,15138,15164,15169,
15276,15321,15405,15538,15585,15784,15807,15862
AAT count: 263
AAC: 5,148,158,203,289,311,315,472,553,598,710,769,834,
844,848,942,1009,1031,1051,1133,1141,1159,1256,1430,
1467,1512,1711,1744,1752,1781,1931,1992,2017,2080,
2255,2277,2356,2411,2431,2589,2764,2867,2991,3042,
3060,3341,3353,3373,3382,3401,3502,3703,3766,3780,
3783,3794,3824,3827,3843,3849,4002,4104,4255,4669,
4694,4701,4730,4768,4784,4815,4860,4865,4870,4885,
4898,4936,4946,4963,5007,5031,5140,5212,5252,5396,
5505,5514,5643,5656,5711,5850,5884,5922,6028,6032,
6264,6370,6477,6586,6610,6654,6693,6733,7080,7119,
7128,7224,7246,7313,7346,7353,7510,7514,7691,7772,
7777,7798,7829,7868,7960,8013,8090,8154,8260,8377,
8418,8483,8609,8615,8672,8761,8796,8874,8997,9109,
9136,9252,9408,9519,9556,9627,9684,9779,9886,9910,
10021,10058,10121,10149,10250,10325,10425,10526,10548,
10709,10818,10856,11066,11570,11601,11630,11822,11852,
11907,11963,12000,12087,12104,12184,12187,12281,12312,
12518,12533,12559,12789,12823,12845,12893,13076,13221,
13234,13268,13305,13331,13416,13525,13577,13649,13911,
13922,14049,14062,14095,14153,14205,14272,14358,14430,
14511,14546,14641,15054,15126,15292,15450,15463,15514,
15570,15673,15722,15793,15801,15853
AAC count: 213
GAT: 37,92,99,108,369,378,508,511,526,593,603,676,696,757,
800,823,867,880,902,936,1005,1088,1169,1180,1209,1296,
1375,1489,1807,2013,2147,2213,2219,2267,2282,2292,
2313,2348,2650,2694,2729,2732,2747,2789,2863,2920,
2966,3130,3250,3263,3266,3284,3310,3417,3446,3519,
3682,3875,4140,4193,4289,4293,4333,4406,4416,5673,
5722,5792,5970,6015,6043,6220,6327,6339,6445,6709,
6954,6978,6984,7069,7109,7363,7367,7417,7571,7599,
7673,7715,7721,7736,8117,8205,8297,8305,8516,8559,
8572,8590,8686,8694,8783,8789,8815,9064,9120,9148,
9416,9597,9767,9920,9930,9975,10025,10116,10173,10200,
10254,10388,10545,10602,10608,10662,10746,10767,10772,
10907,10934,10961,11166,11220,11415,11637,11670,11748,
11817,11921,11936,11976,12050,12096,12120,12134,12299,
12339,12426,12471,12488,12530,12575,12714,12781,12828,
12831,12885,12984,12987,12990,13061,13107,13215,13346,
13355,13424,13431,13455,13565,13626,13725,13902,14025,
14082,14194,14292,14403,14602,14618,14978,15003,15016,
15161,15270,15317,15365,15375,15397,15470,15581,15620,
15773
GAT count: 189
GAC: 81,265,388,430,490,874,921,962,1340,1534,1567,1666,
2052,2186,2306,2482,2548,2662,2934,3057,3073,3099,
3170,3253,3440,3474,3729,4013,4026,4419,4489,4564,
4609,4655,4665,4810,5001,5086,5360,5595,5739,6124,
6682,6741,6796,6837,7286,7546,7607,7628,7936,8086,
8348,8390,8527,8594,8632,8990,9029,9045,9237,9621,
9855,9902,9953,9959,9968,10182,10257,10268,10437,10466,
10488,10613,10758,10806,10880,10985,11154,11195,11358,
11382,11474,11550,11807,11883,11969,12161,12179,12195,
12342,12364,12384,12552,12587,12615,12685,12837,13449,
13569,13955,14102,14246,14892,15110,15193
GAC count: 106
TGT: 137,297,348,420,871,947,1287,1658,1734,1831,2132,2140,
2263,2630,3163,3193,3589,3595,3611,3674,3737,3772,
3836,3856,3908,4278,4441,5501,5703,5766,5988,6040,
6098,6191,6294,6342,6399,6411,6480,6500,6553,6625,
6646,6779,6884,6962,7000,7018,7046,7095,7378,7395,
7399,7404,7507,7685,7730,7872,7884,7893,7917,8007,
8022,8031,8044,8076,8129,8168,8218,8245,8338,8426,
8508,8512,8622,8665,8842,9017,9180,9248,9367,9501,
9730,9812,9860,9890,9927,10015,10070,10373,10410,10727,
10733,10781,10784,10822,11266,11342,11347,11351,11460,
11645,11705,11723,11759,11790,12028,12080,12242,12246,
12293,12434,12541,12627,12664,12762,12777,12806,12964,
13015,13145,13193,13259,13273,13338,13410,13496,13505,
13701,13774,13807,13820,13866,13925,13969,13972,14008,
14070,14086,14091,14179,14222,14587,14614,14732,14762,
14810,14855,15008,15029,15059,15176,15245,15887
TGT count: 154
TGC: 6165
TGC count: 1
CAA: 141,1074,1348,1354,1378,1630,1834,1864,2115,2809,2910,
2950,3271,3427,3461,3479,3710,3852,4433,4508,4540,
4613,4675,4796,5064,5328,5363,5586,5774,5890,5953,
6405,6748,7036,7085,7143,7162,7185,7280,7306,7558,
7821,8236,8289,8354,8441,8545,8904,8969,8993,9218,
9380,9449,9455,9530,9538,9563,9587,10185,10506,10631,
10650,10886,10927,11024,11033,11092,11139,11687,11731,
12478,12925,13119,13175,13462,13840,13908,14165,14378,
14420,14434,14528,14694,14765,15119,15237,15443,15453,
15605,15662,15737
CAA count: 91
CAG: 433,1080,1184,1236,1326,1655,2108,2129,2205,3012,3088,
3515,4205,4225,4353,4372,4582,4993,5309,5872,5932,
6151,6210,6300,7055,7805,8106,8110,8301,8311,8800,
9090,9164,9593,9711,9742,9763,9832,9872,10666,11083,
11201,11313,12100,12631,12784,12961,14055,14333,15764
CAG count: 50
GAA: 574,746,1138,1229,1898,1966,2021,2159,2252,2428,2526,
3029,3136,3325,3762,4125,4154,4724,4745,5197,5472,
6918,7329,7574,7973,8036,8212,9270,9432,10227,10317,
10335,10391,10914,11184,11616,12902,13001,13286,14013,
15144,15287,15698,15859
GAA count: 44
GAG: 352,484,982,997,1121,2846,3833,4077,5801,5941,6448,
6510,6889,7658,8521,8681,9078,9321,9691,9837,10218,
10567,10812,11521,12450,13653,14172,14749,14783,15429,
15705
GAG count: 31
GGT: 15,273,417,466,545,610,633,727,752,762,807,979,1047,
1212,1914,2124,2197,2216,2334,2555,2675,3530,3558,
3608,3658,4010,4091,4175,4188,4807,5461,5559,5562,
5667,5815,6336,6360,6389,6539,6729,6824,7042,7768,
7856,7907,8134,8278,8503,8786,8812,8825,8884,8953,
9003,9041,9223,9715,9736,9825,9914,10032,10137,11800,
11877,12513,12578,12799,12873,13012,13513,13574,13764,
13869,13890,13937,14595,14669,14691,14801,14860,14975,
15104,15267,15328,15494,15693,15710,15745,15788,15822,
15892
GGT count: 91
GGC: (0)
GGA: 184,286,1028,1106,1801,1960,2896,2940,3080,4045,4954,
5242,5919,6828,8146,8176,8250,9544,10018,10082,10552,
10791,12356
GGA count: 23
GGG: 1149,1404,2086,2615,2716,3605,5053,5537,6357,6474,
6583,6846,7010,7955,8065,8143,8950,9438,9942,11049,
11441,12045,13256,15248,15544
GGG count: 25
CAT: 40,165,170,207,505,615,804,884,1044,1091,1146,1244,
1361,1504,1530,1728,1731,1777,1784,1876,1995,2194,
2323,2488,2520,2592,2917,2995,2998,3205,3358,3392,
3548,4052,4084,4097,4214,4248,4409,5034,5306,5443,
5454,5457,5490,5533,5615,5622,5877,6000,6101,6129,
6180,6291,6452,6465,6594,6666,6699,6744,6810,6815,
6893,6948,7159,7263,7319,7342,7451,7481,7564,7621,
7756,7920,8081,8266,8325,8409,8472,8496,8676,8913,
8959,8985,9145,9161,9191,9377,9446,9483,9490,9665,
9698,9783,10170,10215,10241,10247,10263,10285,10352,
10370,10398,10418,10530,10762,10803,11169,11258,11305,
11364,11388,11426,11477,11486,11561,11590,11667,11710,
11715,11966,11984,12109,12168,12202,12278,12303,12336,
12380,12414,12429,12611,12753,12767,12850,12865,12899,
12970,13070,13138,13189,13196,13300,13317,13362,13420,
13510,13535,13596,13619,13646,13731,13737,13744,13777,
13887,13934,13945,13999,14160,14229,14236,14303,14453,
14487,14515,14828,14868,15039,15083,15172,15206,15215,
15372,15416,15551
CAT count: 176
CAC: 116,161,246,381,437,666,705,990,1266,1520,1647,1761,
1788,1884,2150,2302,2580,2680,2820,2890,2903,2959,
3186,3299,3434,3506,3509,3686,3790,3803,3923,3950,
4483,4579,4622,4697,4712,4715,4781,4891,5110,5114,
5119,5129,5155,5188,5317,5376,5379,5391,5403,5418,
5520,5785,5869,6276,6346,6396,6543,6563,6602,6651,
6712,7170,7191,7267,7275,7468,7551,7590,7603,7678,
7843,7930,8010,8188,8330,8575,8612,9011,9052,9056,
9094,9153,9174,9276,9339,9364,9477,9631,9775,9804,
9808,9821,10093,10152,10998,11043,11088,11162,11682,
11770,11951,11996,12145,12260,12437,12881,13064,13166,
13472,13517,13550,13682,13897,13919,14110,14395,14621,
14739,15187,15298,15369,15477,15530,15633
CAC count: 126
ATT: 60,72,211,336,345,571,772,775,856,877,925,1401,2009,
2136,2270,2545,2724,2759,2830,2927,3946,4023,4144,
4385,4430,4741,5487,5938,5973,6105,6793,6856,6906,
7433,7896,8489,8569,8625,8889,8965,9198,9401,9486,
9511,9515,9653,9681,9815,9895,9905,9972,11297,11529,
11673,11728,11743,11795,11844,11899,12042,12329,12332,
12393,12456,12584,12693,12744,12834,12870,13313,13679,
13872,14300,14549,15100,15336,15362,15491,15681,15833,
15844,15876
ATT count: 82
ATC: 75,102,177,190,339,826,916,950,987,1714,1924,2671,
2879,2887,2946,3214,3625,4296,4350,5276,5313,5434,
5543,5609,5947,6036,6132,6144,6148,6311,6570,6767,
7356,7463,7688,7706,7939,8048,8094,8199,8272,8342,
8457,8636,8928,9037,9245,9315,9469,9493,10063,11211,
11391,11494,12058,12725,12941,13199,13531,13559,13635,
13686,13710,13756,13884,14052,14361,14427,14467,14543,
14713,14841,14865,14931,14966,15086,15212,15273,15521,
15594,15601,15616,15642,15655,15659
ATC count: 85
ATA: 22,214,887,3732,3913,3937,4035,4888,5747,6086,6207,
6304,6373,6392,6696,7292,7337,7925,8599,8764,9048,
9263,9985,10260,11179,11498,11811,12396,12661,12954,
13162,13227,13371,13427,13469,13951,14208,14626,15021,
15062,15411,15748,15761,15840
ATA count: 44
CTT: 43,54,259,342,453,498,636,792,958,994,1002,1012,1172,
1176,1507,1675,2475,2541,2986,3260,3287,3455,3668,
3808,3839,3930,4017,4071,4185,4209,4274,4308,4761,
5349,5728,5866,6234,6288,6461,6578,6637,6783,6967,
7072,7123,7153,7374,7448,7555,7643,7666,8165,8284,
8493,8716,8862,8919,8923,8931,9260,9725,9787,9818,
10037,10089,10146,10179,10210,10314,10558,10593,10638,
10740,10825,10866,11060,11379,11423,11604,11642,11652,
11892,11943,12011,12199,12226,12741,12854,12935,12997,
13320,13441,13691,13785,13894,14066,14197,14448,14591,
14637,14774,14885,15080,15097,15184,15555,15558,15629
CTT count: 108
CTC: 237,356,564,787,1062,1097,1725,1985,2002,2034,2105,
2228,2326,2393,2435,2445,2686,2743,2806,2906,3035,
3257,3798,4133,4243,4320,4378,4520,4530,4645,4753,
4765,4778,4831,4846,4850,5179,5325,5341,5344,5464,
5478,5509,5547,5647,5650,6380,6515,6806,7113,7148,
7215,7593,7624,7864,8120,8321,8447,8834,9584,9848,
9883,10131,10384,10470,10647,10699,10800,10995,11002,
11012,11072,11223,11339,11939,11991,12123,12138,12165,
12230,12267,12270,12521,13073,13130,13172,13185,14004,
14316,14717,14849,15283,15420,15563
CTC count: 94
CTA: 46,619,1041,1310,1366,1652,2190,3385,3449,3512,3561,
3776,4130,5408,5692,5824,5997,6023,6285,6935,6945,
7092,7303,7610,7781,7811,7967,8184,8654,8710,8768,
8819,8854,9361,10623,11069,11437,11597,11913,12651,
12877,13830,13847,13958,14124,14611,14657,14845,15225,
15280,15346
CTA count: 51
CTG: 227,262,392,443,587,607,820,1054,1253,1313,1844,2055,
2121,2387,2931,3023,3721,4042,5159,5695,5809,5905,
6226,7194,7409,7784,7985,8275,9060,9318,9751,10162,
11502,11904,12212,12423,13859,14076,14952,15091,15190
CTG count: 41
TTA: 121,449,653,2143,2166,2513,3244,3344,3586,4087,4317,
4394,5591,6223,6598,6925,7359,7635,7963,8317,8703,
8896,9295,9695,9739,10159,10238,10585,10670,10691,
10883,11125,11291,12321,13089,13539,13810,13940,14833,
14934,15026,15151,15196,15259,15295,15517,15715,15753
TTA count: 48
TTG: 12,630,739,932,1156,1163,1337,2352,2523,2771,2937,
3655,5707,6157,6865,7681,8097,8532,8846,8871,9687,
9718,10454,10576,12703,13101,13585,14283,14508,14536,
14566,14725,15432
TTG count: 33
AAA: 8,699,1837,2492,3124,4470,4511,5067,5203,6198,6252,
7024,7062,7484,9205,9392,9395,10365,11063,11573,11862,
11916
AAA count: 22
AAG: 405,646,928,2576,3293,3413,4029,5070,5574,6547,6862,
8393,9676,10787,10903,10989,11039,11354,11430,11660,
12481,13545,15049,15497,15576,15588
AAG count: 26
ATG: 475,1117,1388,1609,1904,2067,2330,3577,9234,10378,
10972,11251,11512,12021,12066,12556,13599,13794,14370,
14479,14745,15684
ATG count: 22
TTT: 912,2083,2414,4178,4360,6442,7210,7381,8062,8916,9604,
9733,9917,10194,10244,10279,10288,10298,10736,10869,
10982,11208,11308,11718,12802,13224,13262,13643,13656,
13722,14306,14993,15541,15591,15856,15871
TTT count: 36
TTC: 26,234,501,1239,1290,2442,3091,3117,3296,3431,3598,
3900,3999,4107,4263,4375,4438,5759,5981,7392,7808,
8584,8803,9014,9334,9404,10143,10683,10815,11133,11910,
12375,13610,13995,14149,14385,14456,14493,14672,15474
TTC count: 40
CCT: 69,1524,1590,1953,2583,2609,2893,3167,3247,3347,3555,
3629,3662,3707,3821,3957,4074,4480,4758,4834,6297,
6429,6679,6690,6951,8196,8713,8771,8822,9267,9560,
9899,10041,10103,10475,10809,11136,11361,11491,12008,
12039,12206,12296,12402,12608,12711,12811,13142,13493,
13881,13961,14243,14710,15066,15141,15209,15804,15810
CCT count: 58
CCC: 1792,2092,2095,2458,2562,2623,2697,2956,3370,3787,
3889,4283,4476,4631,4658,4672,4708,4718,4733,4853,
4895,4905,4911,4933,4939,4960,4970,4980,5010,5021,
5028,5060,5076,5148,5173,5191,5222,5249,5266,5288,
5333,5400,5428,6419,6987,7139,7177,7316,7322,7881,
8256,8281,8725,8956,9227,10307,11021,11371,11408,11583,
11764,11988,13365,13374,13381,13521,14391,15485,15879
CCC count: 69
CCA: 2,1017,1550,2176,2377,2752,3064,4094,4591,4691,5044,
5137,5167,5260,5603,5991,6113,6522,8227,10702,11924,
12309,12475,13671
CCA count: 24
CCG: 3174,5235,15610
CCG count: 3
TCT: 2345,5887,7818,8524,9000,9480,9995,10197,10282,11030,
11933,12453,13247,13788,14682,14688,15036,15116,15408
TCT count: 19
TCC: 253,1560,2040,3424,3638,6550,8370,8415,8707,9607,12250,
12862,13067
TCC count: 13
TCA: 460,1222,1427,1579,5526,6267,7491,7533,8697,8793,8982,
9081,9745,10716,10849,11773,12624,14117,14269,14336,
14364,14794,15203,15727
TCA count: 24
TCG: 3465,11147,14347
TCG count: 3
AGT: 520,523,723,1128,1381,1486,1547,1570,2658,2842,3364,
3377,4343,4451,5619,5805,6723,6913,6942,7236,9132,
9308,9465,9590,9828,10124,10605,11018,11057,11198,
11230,11540,11981,12306,12345,14030,14650,14664,14768,
15459
AGT count: 40
AGC: (0)
ACT: 1537,4427,5926,6083,9624,11233,11756,12719,12967,13218,
14233,14901,14972,15623,15781
ACT count: 15
ACC: 219,469,837,1094,1395,1722,2485,2665,3878,4790,5004,
5295,5382,5517,6503,6899,9171,9358,10460,11097,11434,
12223,13231,13413,13837
ACC count: 25
ACA: 155,1319,1764,2782,3334,3592,3619,3747,4601,4771,5122,
5836,7131,8578,9346,10012,10828,15073
ACA count: 18
ACG: 12697,14581
ACG count: 2
TGG: 2425,3471,3769,4168,4323,6171,6213,6818,7578,8465,
8973,9075,9106,9352,11244,13045,13716
TGG count: 17
TAT: 333,1263,1358,7718,7933,7952,9324,9924,11447,11457,
11880,12549,12728,13528,13562,13734,14219,14987,15107
TAT count: 19
TAC: 243,3499,5498,7116,7846,7910,10620,10797,11889,13292,
15423
TAC count: 11
GTT: 411,1077,1977,2740,2827,3032,3160,3867,6975,7039,7423,
9273,9435,10176,10341,10523,11814,12077,12817,12948,
13253,13985,14073,14289,14406,14608,15378
GTT count: 27
GTC: 2046,5451,6282,6321,9215,9370,9452,9933,10005,15665
GTC count: 10
GTA: 702,3328,6408,6426,6458,8433,9581,10778,11580,12399,
13728
GTA count: 11
GTG: 2633,3993,7613,7739,7970,9429,11471,13038,13122,13152
GTG count: 10
TAA: 7243,8539,9875,14644,14777,14981,15218
TAA count: 7
TAG: 1596,9177,9292,9643,14852,15825
TAG count: 6
TGA: 3144,3916,8016,8475,10517,10570,12155
TGA count: 7
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