Appendix usa_co

This is an appendix to The Coronaviridae -5

Coronaviridae by Country

Definitions:

'GBFF': GenBank flat file
(GenBank-format text file);
'version': the GenBank virus identity;
'virus type' elements:
'CO-':SARS-CoV-1;
'C2-': SARS-CoV-2;
'-AN-': animal virus;
'-HS-':human virus;
'-RN-': RNA genome;
'-PG': partial genome;
'-CG': complete genome;
'meta-host': the host of the
microbe which reproduces the virus;
'collection date': the date
(if known, else estimated) the virus was collected;
'publish date': the date
the virus info was made known;
'GBFF gene list': the genes
listed in the GBFF;
'gene test count': verified count
(genes in genome);
'avg gene len': average length
of genes in genome
(mutant CoV-2 are in bold).

USA (Cov1, count: 358)

version	virus type	meta-host	collection date	publish date	GBFF gene list	gene test count	avg gene len
AY585228.1	CO-HS-RN-PG	human	?	2004-08-04	3	3	7483.67
DQ286389.1	CO-AN-RN-PG	cat	?	2007-02-14	9	9	3081.56
AY994055.1	CO-AN-RN-PG	cat	?	2008-12-02	10	10	2874.4
EU186072.1	CO-AN-RN-PG	cat	?	2008-02-20	5	5	5332.2
NC_006213.1	CO-HS-RN-PG	human	?	2019-02-21	8	8	3759.75
AY514485.1	CO-AN-RN-PG	?? animal	?	2007-04-06	7	0	0
GU593319.1	CO-AN-RN-PG	mice	?	2010-07-23	9	9	4871.56
DQ915164.2	CO-AN-RN-PG	alpaca	?	2007-06-19	6	6	1433
NC_002306.3	CO-AN-RN-PG	cat	?	2018-08-13	10	10	2874.4
KF650371.1	CO-AN-RN-PG	pig	?	2013-12-20	7	7	5680.86
KF650372.1	CO-AN-RN-PG	pig	?	2013-12-20	7	7	5680.86
MN690608.1	CO-AN-RN-PG	bottlenose dolphin	?	2020-03-15	14	14	2184.86
MN690609.1	CO-AN-RN-PG	bottlenose dolphin	?	2020-03-15	14	14	2184.86
KF650374.1	CO-AN-RN-PG	pig	?	2013-12-20	7	7	5680.86
KF650375.1	CO-AN-RN-PG	pig	?	2013-12-20	7	7	5680.86
MN690610.1	CO-AN-RN-PG	bottlenose dolphin	?	2020-03-15	14	14	2184.86
MN690611.1	CO-AN-RN-PG	bottlenose dolphin	?	2020-03-15	14	14	2184.86
JX169866.1	CO-AN-RN-PG	mice	1947-08-14	2014-09-26	11	11	4015.36
JX169867.1	CO-AN-RN-PG	mice	1947-08-14	2014-09-26	11	11	4042.91
JX504050.1	CO-HS-RN-PG	human	2004-01-01	2013-06-28	5	5	5260.8
KX900393.1	CO-AN-RN-PG	?? animal	2006-12-08	2018-10-01	9	9	3089
JQ410000.1	CO-AN-RN-PG	alpaca	2008-01-01	2012-04-29	6	6	1009.5
JX163927.1	CO-AN-RN-PG	?? animal	2010-02-05	2020-05-27	14	14	3074.36
JX163924.1	CO-AN-RN-PG	?? animal	2010-02-05	2020-05-27	14	14	3074.36
JX163925.1	CO-AN-RN-PG	?? animal	2010-02-05	2020-05-27	14	14	3074.36
JX163928.1	CO-AN-RN-PG	?? animal	2010-02-05	2020-05-27	14	14	3074.36
JX163923.1	CO-AN-RN-PG	?? animal	2010-02-10	2020-05-27	14	14	3074.36
JX163926.1	CO-AN-RN-PG	?? animal	2010-02-10	2020-05-27	14	14	3074.36
KC461235.1	CO-AN-RN-PG	cat	2011-01-01	2013-12-31	10	10	2852.8
KC461237.1	CO-AN-RN-PG	cat	2011-01-01	2013-12-31	10	10	2805.4
KC461236.1	CO-AN-RN-PG	cat	2011-01-01	2013-12-31	10	10	2852.8
KM052365.1	CO-AN-RN-PG	pig	2013-05-15	2014-08-26	4	4	1598.75
KF650370.1	CO-AN-RN-PG	pig	2013-05-16	2013-12-20	7	7	5680.86
KJ778615.1	CO-AN-RN-PG	wild pig	2013-05-20	2014-06-18	2	2	6624
KF650373.1	CO-AN-RN-PG	pig	2013-06-06	2013-12-20	7	7	5680.86
MH779860.1	CO-AN-RN-PG	?? animal	2014-01-01	2018-09-24	3	3	1802
MH779856.1	CO-AN-RN-PG	?? animal	2014-01-01	2018-09-24	3	3	1802
KJ481931.1	CO-AN-RN-PG	pig	2014-01-04	2014-06-05	7	7	3586
MF618252.1	CO-AN-RN-PG	mice	2014-01-16	2017-11-08	1	1	135
KJ769231.1	CO-AN-RN-PG	pig	2014-03-01	2015-07-09	7	7	3586
KJ813439.1	CO-HS-RN-PG	human	2014-04-30	2015-09-29	9	9	3277.56
KJ829365.1	CO-HS-RN-PG	human	2014-05-10	2014-05-16	9	9	3277.56
KP223131.1	CO-HS-RN-PG	human	2014-12-14	2014-12-14	9	9	3277.56
KT381875.1	CO-HS-RN-PG	human	2015-01-01	2016-11-22	6	6	4496.83
MH779857.1	CO-AN-RN-PG	?? animal	2015-01-01	2018-09-24	3	3	1802
KY419113.1	CO-AN-RN-PG	wild pig	2015-07-25	2017-04-03	2	1	1274
KY419107.1	CO-AN-RN-PG	wild pig	2015-07-25	2020-08-21	1	0	0
KY419112.1	CO-AN-RN-PG	wild pig	2015-08-01	2020-08-21	1	0	0
KY419109.1	CO-AN-RN-PG	wild pig	2015-08-01	2020-08-21	1	0	0
KY419111.1	CO-AN-RN-PG	wild pig	2015-08-08	2020-08-21	1	0	0
KY419110.1	CO-AN-RN-PG	wild pig	2015-08-12	2020-08-21	1	0	0
KY419104.1	CO-AN-RN-PG	wild pig	2015-08-15	2020-08-21	1	0	0
KY419106.1	CO-AN-RN-PG	wild pig	2015-08-15	2020-08-21	1	0	0
KY419105.1	CO-AN-RN-PG	wild pig	2015-08-20	2020-08-21	1	0	0
KU521535.1	CO-HS-RN-PG	human	2015-09-01	2016-11-22	4	4	6406
KY419103.1	CO-AN-RN-PG	wild pig	2015-09-15	2020-08-21	1	0	0
MH779858.1	CO-AN-RN-PG	?? animal	2016-01-01	2018-09-24	3	3	1802
MH779859.1	CO-AN-RN-PG	?? animal	2016-01-01	2018-09-24	3	3	1793
KY406735.1	CO-AN-RN-PG	pig	2016-11-01	2019-01-01	9	9	3010
KX179500.1	CO-HS-RN-PG	human	2016-12-03	2016-12-03	6	6	4496.83
KX900394.1	CO-AN-RN-PG	?? animal	2018-10-01	2018-10-01	9	9	3089