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Tuesday, June 9, 2020

On The Origin Of The Home Of COVID-19 - 4

Fig. 1 Nucleobase/nucleic acid sequence comparisons
I. Recap /Update

This series is about finding the reality of COVID-19 ... in terms of finding its original host microbe located within its original animal or human vector species (On The Origin Of The Home Of COVID-19, 2, 3).

Since the coronavirus in general, or specifically the SARS coronavirus, is found in a variety of creatures on land, in the sea, and in the air, I am continuing to build datasets and programs to analyze all of those varieties.

The screen capture shown as Fig. 1 is one visual example of the ongoing analysis, while Fig. 2 below is an HTML table composed of the numerical details, some of which are depicted in Fig. 1.

The nature of Fig. 1 is that I make a list of all the bases of a sample, in this case human samples, then compare them so as to detect variations.

The table below is used to show how many matches and mismatches (genetic modulations) take place in each sample (each A,C,G,T, and U base is counted).

The "Score" column is a calculation of the degree of modulation, with '1' being a complete match (no modulation), and anything above one being some degree of modulation (or morph).

The higher the number of the Score means a higher modulation between the two samples (each layer is compared to the first layer).

II. General Analysis Results

Fig. 2

Meaning of Virus Decription Code (four 2-letter pairs):

Disease type(1st pair):
SARS DISEASE = "SA"
SARS CORONA DISEASE = "SC"
CORONA DISEASE = "CO"
OTHER DISEASE = "OD"

Carrier/Vector type(2nd pair):
ANIMAL = "AN"
HUMAN = "HS"
UNKNOWN "VU"

Genome completion indicators(3rd pain):
COMPLETE GENOME = "CG"
COMPLETE CDS = "CC"
PARTIAL COMPLETION = "CU"

Virus type (4th pair):
RNA = "RN"
DNA = "DN"


Following Table's Virus Description Code: CO-HS-CG-DN


Map Id.
Number
Map
Length
Adenine
Count
Cytosine
Count
Guanine
Count
Thymine
Count
Gap
Count
Largest
Gap
Score
NC_019843 30119 7900 6116 6304 9799 0 0 1
KJ361502 29652 7754 6017 6219 9662 22097 26 20.3755
NC_006577 29926 8331 3895 5699 12001 21978 34 25.97
AY567487 27553 7253 3979 5516 10805 20217 31 23.7462
NC_028752 27132 7330 4541 5888 9373 19958 26 20.1253
DQ415900 29812 8307 3877 5658 11970 22014 32 24.6297
NC_002645 27317 7420 4549 5903 9445 20377 33 25.6162
KM027257 29774 7787 6026 6239 9722 22258 28 21.9318
NC_005831 27553 7253 3979 5516 10805 20217 31 23.7462
KT368908 27361 7404 4582 5922 9453 20281 26 20.2722
NC_038294 30111 7897 6096 6303 9815 22421 30 23.3383
KF923895 30119 8285 4561 6452 10821 21683 26 19.7177
NC_006213 30119 8267 4567 6503 10782 21683 29 21.8774
KY014281 30119 8275 4545 6491 10808 22389 33 25.5306
KP209312 30119 7902 6097 6303 9817 138 7 1.03207
AY903459 30119 8283 4572 6461 10803 22318 30 23.2298
KT374055 29831 7802 6039 6246 9744 22489 30 23.6164
KF530074 30119 8281 4562 6480 10796 22413 36 27.7893
KY581686 30119 7897 6100 6306 9816 142 7 1.033
KF530086 30119 8276 4564 6490 10789 22246 28 21.6809
KT779555 29887 8329 3876 5680 12002 21964 35 26.7216
DQ415901 30097 8391 3906 5739 12061 22024 28 21.4895
MH822886 30067 7884 6082 6283 9818 21860 29 22.0842
KF530109 27410 7214 3957 5498 10741 19773 28 21.1986
MG757593 30096 7900 6085 6291 9820 22574 29 22.7519
KF923922 30119 8291 4566 6450 10812 21728 29 21.9207
MN723542 30119 7911 6088 6290 9830 2996 38 4.77994
KP209311 30119 7898 6099 6306 9816 141 7 1.03277
KT368909 27386 7402 4591 5929 9464 20293 26 20.266
KT806052 30058 7889 6081 6284 9804 22438 29 22.6482
KU710264 30096 7898 6083 6295 9820 22561 29 22.7394
KJ958218 30119 8294 4564 6444 10817 22362 27 21.0463
KY073748 27636 7480 4763 6034 9359 20490 26 20.277
KJ361503 30040 7869 6086 6295 9790 22485 30 23.4551
MG428701 27623 7287 4002 5516 10818 20442 31 23.9411
KF923916 30119 8303 4560 6442 10814 21725 29 21.9179
KX179500 27553 7250 3981 5523 10799 20228 31 23.7586
JX503061 27208 7371 4508 5866 9463 19645 26 19.7728
KT253326 27193 7354 4558 5893 9388 20211 31 24.0405
KF530072 30119 8276 4551 6481 10811 22220 28 21.6567
KY996417 27270 7415 4509 5869 9477 19661 26 19.7454
JQ765571 27487 7227 3981 5516 10763 20168 30 23.0119
KX538972 30119 8289 4570 6445 10815 21723 29 21.9159
KF530105 27413 7207 3959 5508 10739 19775 28 21.1984
KP223131 30119 7901 6093 6303 9822 135 7 1.03138
KF530070 30119 8283 4583 6461 10792 21488 27 20.2628
KY369912 27208 7395 4505 5852 9456 19670 26 19.7967
KY581693 30065 7892 6081 6294 9798 1675 18 2.00283
KX538973 30119 8295 4573 6442 10809 21665 42 31.2112
KF600627 30076 7890 6094 6294 9798 22331 28 21.7896
MG197717 30119 8297 4566 6445 10811 21788 26 19.8083
AF304460 27317 7420 4549 5903 9445 20377 33 25.6162
KT326819 29995 7876 6061 6276 9782 22447 34 26.4442
DQ415902 29845 8272 3855 5705 12013 21741 28 21.397
KY581685 30119 7899 6103 6303 9814 131 7 1.03045
KX538964 30119 8291 4569 6442 10817 21725 29 21.9179
MG757599 30096 7893 6087 6297 9819 22575 29 22.7529
KF530097 30119 8281 4563 6478 10797 22245 28 21.68
MG011358 30096 7898 6087 6293 9818 22570 29 22.7481
KY674920 30119 8303 4556 6456 10804 22289 34 26.1611
MK462250 30118 7907 6077 6297 9837 204 7 1.04741
JX869059 30119 7900 6116 6304 9799 0 0 1
MN120514 30118 7905 6086 6298 9829 225 7 1.05229
KF530082 30119 8288 4570 6467 10794 22334 28 21.7627
MG197718 30119 8293 4556 6465 10805 21750 30 22.6641
KF686341 29832 8305 3884 5670 11973 21858 38 28.8427
MG428704 27832 7332 4021 5573 10906 20557 26 20.2039
KF923898 30119 8288 4557 6449 10825 21624 30 22.5386
MG757603 30096 7894 6087 6297 9818 22575 29 22.7529
KU291448 27022 7337 4479 5819 9387 20208 31 24.1829
MH013216 30118 7906 6095 6303 9814 158 7 1.03672
KY674921 29581 8188 3825 5635 11933 21921 38 29.1599
MN310476 30119 8300 4554 6448 10817 22162 33 25.2819
KF600613 30028 7870 6074 6292 9792 22310 28 21.8033
KT368893 27386 7401 4592 5932 9461 20298 26 20.2707
KF530104 27410 7214 3954 5497 10745 19765 28 21.1904
KX538979 30119 8291 4565 6446 10817 21725 29 21.9179
KX538974 30119 8297 4573 6441 10808 21660 42 31.2042
MG912600 30063 7904 6063 6282 9814 21971 27 20.7325
KX538966 30119 8291 4568 6444 10816 21724 29 21.9169
MN306040 26848 7062 3885 5394 10507 19724 33 25.2436
JQ765573 27487 7232 3978 5510 10767 20170 30 23.014
KX538965 30119 8293 4575 6443 10808 21666 42 31.2126
KY554974 30119 8296 4566 6447 10810 21721 29 21.914
MN310478 30025 8321 4557 6432 10715 22264 40 30.6606
KT806049 30096 7900 6086 6293 9817 22573 29 22.751
MG011345 30096 7901 6071 6295 9829 22572 29 22.75
KY581691 30119 7898 6099 6306 9816 141 7 1.03277
MG912604 30075 7900 6071 6289 9815 5233 30 6.21995
JN129834 30119 8290 4585 6454 10790 21675 23 17.5518
KT026454 30119 7902 6089 6303 9825 163 7 1.03788
KF600620 29971 7860 6077 6279 9755 22386 42 32.3707
MG757595 30096 7891 6086 6302 9817 22576 29 22.7539
KF600647 30115 7898 6105 6302 9810 22657 35 27.3322
KX034096 30082 7895 6076 6295 9816 21661 40 29.8026
KY674916 27492 7225 3972 5521 10774 20354 28 21.7301
KY983588 30119 8295 4566 6439 10819 22260 33 25.3893
KF600630 30081 7888 6093 6302 9798 21657 40 29.7982
MF000459 30018 7889 6062 6277 9790 21702 30 22.689
AY518894 27508 7248 3951 5513 10796 19931 35 26.3594
KT253328 27270 7384 4567 5907 9412 20282 31 24.0562
KY369911 27226 7395 4500 5857 9474 20198 34 26.2234
KT368899 27390 7407 4597 5930 9456 20299 26 20.2689
DQ415913 29785 8291 3860 5671 11963 21909 32 24.5383
MK462243 30115 7907 6089 6290 9829 2995 38 4.77918
JN129835 30119 8292 4573 6451 10803 21591 26 19.6383
KT368910 27387 7403 4591 5929 9464 20294 26 20.2662
KF923908 30119 8289 4569 6452 10809 21727 29 21.9198
KT121580 29799 7792 6038 6243 9726 22388 33 25.7929
KX154692 30096 7900 6082 6290 9824 22569 29 22.7471
MN365232 30118 7907 6080 6294 9837 208 7 1.04834
KY369905 30119 8294 4574 6440 10811 22332 26 20.2779
MK462249 30118 7908 6080 6289 9841 211 7 1.04904
KT806045 30059 7890 6079 6283 9807 22460 29 22.6687
KY688118 30029 7890 6063 6289 9787 21715 24 18.3552
KF530090 30119 8281 4565 6478 10795 22245 28 21.68
MG912603 30119 7911 6084 6296 9828 189 7 1.04393
KF530081 30119 8284 4575 6462 10798 22442 29 22.6082
MG366483 30096 7903 6082 6290 9821 22563 29 22.7413
AY391777 30119 8270 4558 6502 10789 22255 27 20.9504
KT368912 27395 7410 4594 5929 9462 20297 26 20.2634
DQ415908 29947 8350 3886 5691 12020 22050 30 23.089
MG977451 30119 8302 4556 6438 10823 21862 27 20.5981
DQ415897 29845 8308 3869 5690 11978 21715 28 21.3726
KX154691 30096 7900 6086 6286 9824 22568 29 22.7461
KY369909 26592 7230 4398 5722 9242 19291 24 18.4106
MG520075 30096 7893 6082 6298 9823 22575 29 22.7529
KF530083 30119 8278 4565 6488 10788 22247 28 21.6818
MG197715 30119 8297 4568 6444 10810 21725 29 21.9179
KR011266 30096 7893 6091 6296 9816 22568 29 22.7461
KT806055 30096 7897 6084 6297 9818 22559 29 22.7375
KX154690 30096 7899 6075 6296 9826 22572 29 22.75
MG912608 30094 7907 6069 6289 9829 22507 29 22.6888
KF923914 30119 8294 4566 6449 10810 21724 29 21.9169
MK462244 30118 7910 6091 6289 9828 192 7 1.04462
KX154685 30096 7900 6079 6289 9828 22580 29 22.7577
MG197711 30119 8294 4553 6467 10805 22293 32 24.6852
KF186564 30081 7890 6097 6295 9799 21662 40 29.8049
MK039552 30119 7901 6093 6303 9822 135 7 1.03138
JQ765575 27487 7232 3978 5509 10768 20172 30 23.0162
MG757598 30096 7891 6087 6298 9820 22577 29 22.7548
KF530112 27395 7213 3967 5489 10726 19752 37 27.6773
KY581688 30119 7897 6101 6306 9815 141 7 1.03277
KJ156944 30055 7877 6078 6295 9805 21766 31 23.4504
MG912599 30111 7911 6079 6295 9826 2878 20 2.91159
KF430201 29934 8334 3894 5701 12005 22005 45 34.0803
MG011352 30096 7902 6086 6289 9819 22575 29 22.7529
JX504050 27553 7255 3978 5516 10804 20215 31 23.744
KT374050 29831 7803 6037 6245 9746 22486 30 23.6134
KF530080 30119 8275 4547 6482 10815 22222 28 21.6586
MG757596 30096 7895 6083 6296 9822 22574 29 22.7519
HM034837 29862 8307 3877 5691 11987 21893 31 23.7273
MF000457 30001 7874 6062 6276 9789 21696 32 24.1416
KF186567 30117 7898 6105 6301 9813 133 7 1.03091
MG912606 30009 7882 6061 6275 9791 21258 29 21.5432
KY581689 30119 7898 6099 6306 9816 141 7 1.03277
MG757594 30096 7895 6083 6297 9821 22574 29 22.7519
KT368906 27395 7412 4597 5929 9457 20297 26 20.2634
MN365233 30118 7907 6081 6293 9837 211 7 1.04904
KF923892 30119 8292 4568 6449 10810 21721 29 21.914
MK280984 30033 7866 6083 6282 9802 21853 28 21.3737
KF923910 30119 8296 4566 6450 10807 21724 29 21.9169
MG428705 27587 7285 3995 5503 10804 20388 32 24.6494
JQ765566 27487 7227 3970 5519 10771 20163 30 23.0064
MG912607 30094 7906 6070 6290 9828 22508 29 22.6898
KF530066 30119 8279 4562 6489 10789 22404 26 20.3401
MG912598 30100 7909 6079 6292 9820 5116 25 5.24917
KF530091 30119 8280 4572 6474 10793 22361 32 24.7575
KT374052 29831 7803 6038 6245 9745 22489 30 23.6164
KF923890 30119 8296 4569 6449 10805 21725 29 21.9179
KT368915 27392 7405 4594 5931 9462 20301 26 20.2693
KX034099 30110 7894 6084 6301 9831 168 7 1.03906
MH940245 29811 8260 3845 5699 12007 22130 39 29.9514
JQ765570 27469 7237 3980 5500 10752 20231 31 23.8316
MG757597 30096 7897 6080 6293 9826 22572 29 22.75
KF530085 30119 8279 4560 6486 10794 21677 26 19.7125
MK334046 27531 7255 3969 5507 10800 20310 30 23.1314
KF530071 30119 8283 4573 6468 10795 22231 28 21.667
MF374985 30119 8291 4578 6436 10814 22366 44 33.6739
KF530069 30119 8291 4577 6463 10788 22243 28 21.6781
KY554975 30119 8296 4566 6448 10809 21721 29 21.914
DQ445911 27550 7252 3989 5516 10793 20180 26 20.0446
MK303622 30119 8294 4561 6439 10825 22468 33 25.6172
DQ415909 29767 8293 3862 5641 11971 21877 30 23.0482
KY684760 27249 7397 4510 5865 9477 20221 27 21.0362
KF514432 27138 7355 4511 5847 9425 20106 25 19.522
KY554972 30119 8296 4559 6448 10816 21724 29 21.9169
KY369907 30119 8292 4573 6441 10813 21668 30 22.5824
MN306018 26963 7078 3908 5429 10548 19680 25 19.2472
DQ415899 29905 8328 3872 5706 11999 21977 24 18.6375
MG977447 30119 8297 4564 6442 10816 22390 35 27.0185
KF923917 30119 8297 4565 6450 10807 21722 29 21.915
MG757601 30079 7888 6079 6294 9818 21941 39 29.4484
KF923899 30119 8304 4579 6444 10792 21592 26 19.6391
MG912595 30082 7906 6074 6291 9811 3453 26 3.98444
KF530087 30119 8274 4565 6491 10789 22250 28 21.6846
MG011361 30036 7879 6069 6279 9809 22271 29 22.5028
KX344031 30119 8298 4570 6443 10808 21667 31 23.3008
MH306207 30119 7907 6088 6299 9825 140 2 1.0093
KF530060 30119 8276 4563 6486 10794 22243 28 21.6781
KY581690 30119 7897 6100 6306 9816 142 7 1.033
KR011265 30066 7884 6083 6292 9807 22442 29 22.6463
KR011263 30096 7893 6091 6296 9816 22568 29 22.7461
AY585229 30119 8266 4567 6503 10783 21682 29 21.8765
KT368905 27397 7413 4596 5929 9459 20300 26 20.2649
KF923907 30119 8295 4568 6449 10807 21721 29 21.914
KY688120 30102 7901 6084 6296 9821 21776 37 27.7661
KY688123 30102 7902 6083 6295 9822 21776 37 27.7661
KT368900 27046 7313 4516 5867 9350 20074 31 24.0087
KF923906 30119 8273 4550 6480 10816 21621 30 22.5356
KT121581 29751 7783 6026 6237 9705 22204 28 21.8972
AY903460 30119 8295 4573 6453 10798 22341 29 22.511
KY688119 30061 7887 6080 6289 9805 21761 37 27.7841
KY673148 30119 7896 6095 6310 9818 156 7 1.03626
MK039553 30119 7900 6094 6305 9820 137 7 1.03184
KY967359 30119 8299 4578 6442 10800 22377 31 24.0315
KU291449 27082 7305 4525 5883 9369 20169 26 20.3632
DQ415907 29887 8328 3879 5677 12003 21966 35 26.7239
KY369906 30119 8295 4574 6437 10813 22332 26 20.2779
KT374054 29831 7802 6039 6246 9744 22489 30 23.6164
KY554968 27523 7233 3974 5526 10790 20245 27 20.8603
KF923893 30119 8295 4567 6445 10812 21729 29 21.9217
KU851863 30096 7896 6082 6296 9822 22571 29 22.749
DQ339101 29755 8282 3856 5661 11956 21837 34 25.9524
MG197716 30119 8300 4565 6442 10812 21718 29 21.9111
KY581692 30119 7897 6100 6306 9816 142 7 1.033
MH121121 30119 8291 4572 6445 10811 21550 26 19.6029
KP209310 30119 7898 6103 6302 9816 145 7 1.0337
MG428706 27637 7287 4006 5520 10824 20414 38 29.0686
KF923915 30119 8296 4565 6448 10810 21718 29 21.9111
MG011357 30096 7907 6074 6283 9832 22565 29 22.7433
KM015348 30042 7871 6088 6292 9791 21683 28 21.2092
MN306053 30119 8308 4567 6426 10818 22337 29 22.5071
KT368896 27389 7405 4598 5930 9456 20293 26 20.2639
MN306042 30119 8295 4569 6433 10822 21519 26 19.5761
KY674915 27302 7168 3941 5487 10706 20170 38 29.0734
KY581694 30119 7903 6094 6302 9820 142 7 1.033
KF192507 30119 7902 6102 6306 9809 22660 35 27.3322
MG197714 30119 8297 4545 6460 10817 21750 28 21.2198
AY597011 29926 8331 3895 5699 12001 21978 34 25.97
MG912597 30047 7895 6070 6282 9800 20678 31 22.3338
DQ415898 29815 8301 3863 5677 11974 21770 28 21.4447
MF314143 30119 8267 4555 6475 10822 22257 27 20.9522
KX154693 30096 7899 6082 6291 9824 22570 29 22.7481
MG977444 30119 8318 4558 6455 10788 21716 33 24.7932
KX034095 30118 7902 6085 6302 9829 165 7 1.03835
MG197721 30119 8295 4552 6465 10807 21753 29 21.9448
KF530106 27401 7215 3945 5497 10744 19839 28 21.2727
KY554967 27523 7232 3976 5526 10789 20245 27 20.8603
KT368892 27391 7408 4595 5932 9456 20302 26 20.271
KX154688 30096 7900 6079 6290 9827 22581 29 22.7587
KY967356 30119 8304 4568 6443 10804 21959 33 25.0595
MK462245 30115 7907 6088 6290 9830 2996 38 4.78044
KF530111 27410 7215 3958 5496 10741 19772 28 21.1976
MN306043 30119 8289 4554 6455 10821 22306 29 22.4773
KF530076 30119 8283 4574 6470 10792 22359 32 24.7554
KY554971 27550 7248 3974 5523 10805 20227 31 23.76
KF923912 30119 8294 4568 6446 10811 21724 29 21.9169
MG772808 27535 7246 3981 5516 10792 20175 27 20.783
KX538976 30119 8291 4573 6445 10810 21727 29 21.9198
MF000460 30045 7891 6073 6280 9801 21693 37 27.7146
KY674919 27136 7382 4485 5848 9421 20084 28 21.7235
KT121574 29896 7828 6053 6264 9751 21553 33 24.7908
KF923903 30119 8299 4571 6438 10811 21723 29 21.9159
MG011343 30096 7903 6086 6289 9818 22573 29 22.751
JQ765574 27467 7222 3970 5515 10760 19933 24 18.417
MF593473 27329 7384 4581 5922 9442 20253 26 20.2681
AY585228 30119 8267 4567 6503 10782 21683 29 21.8774
KP209307 30119 7899 6100 6305 9815 143 7 1.03323
KF923919 30119 8294 4568 6449 10808 21723 29 21.9159
KX538978 30119 8293 4565 6445 10816 21727 29 21.9198
KJ829365 30119 7901 6095 6303 9820 133 7 1.03091
MK303620 30119 8296 4557 6440 10826 22465 33 25.6139
DQ415910 29797 8304 3865 5649 11979 21918 27 20.8606
MG011350 30083 7900 6085 6282 9816 22475 29 22.6659
KY674942 29596 8233 3863 5597 11903 21616 28 21.4503
KT368895 27396 7412 4597 5930 9457 20298 26 20.2637
KJ156949 30055 7877 6073 6298 9807 21764 31 23.4483
MK462252 30118 7907 6071 6293 9847 209 7 1.04858
KT806044 30096 7898 6087 6292 9819 22572 29 22.75
MK303619 30119 8294 4570 6436 10819 22427 33 25.5722
DQ415905 29857 8321 3872 5667 11997 22014 23 17.9582
KT368902 27396 7412 4593 5929 9462 20300 26 20.2656
KM027260 29874 7820 6052 6259 9743 22300 32 24.887
KU710265 29566 7757 5985 6184 9640 22011 29 22.5896
KF923925 30119 8288 4569 6447 10815 21724 29 21.9169
KY983586 27381 7208 3968 5481 10724 20245 28 21.7027
DQ415911 29902 8286 3859 5721 12036 21896 32 24.4323
MG197723 30119 8296 4575 6443 10805 22231 32 24.6194
KF530067 30119 8283 4580 6469 10787 21718 29 21.9111
KT806053 30096 7897 6084 6295 9820 22574 29 22.7519
KF923886 30119 8280 4576 6464 10799 21641 30 22.5555
MG366880 30023 7885 6061 6270 9807 17488 36 21.9695
KJ614529 30094 7879 6105 6305 9805 21841 26 19.8697
MG011349 30096 7902 6088 6284 9822 22568 29 22.7461
KX538969 30119 8297 4571 6442 10809 21663 42 31.2084
KX538975 30119 8297 4573 6440 10809 21666 42 31.2126
KY014282 30119 8272 4568 6477 10802 22444 39 30.0619
KT374053 29831 7804 6038 6244 9745 22489 30 23.6164
KT368913 27388 7402 4591 5931 9464 20294 26 20.2655
KT806051 30096 7898 6082 6291 9825 22568 29 22.7461
KY581684 30119 7900 6103 6302 9814 130 7 1.03021
KY983587 27235 7401 4507 5853 9474 20208 27 21.0336
KX538977 30119 8297 4573 6441 10808 21660 42 31.2042
MK462246 30115 7909 6089 6288 9829 2995 38 4.77918
KJ156866 30054 7876 6091 6292 9795 21761 31 23.446
KT225476 29809 7795 6044 6237 9733 21764 30 22.9035
KF923920 30119 8295 4563 6447 10814 21723 29 21.9159
KY829118 27513 7235 3973 5520 10785 20411 36 27.7072
KF923924 30119 8292 4567 6447 10813 21728 29 21.9207
KT806048 30096 7896 6088 6297 9815 22567 29 22.7452
KF600644 30062 7886 6088 6292 9796 22264 28 21.7369
MG011342 30096 7898 6068 6292 9838 22567 29 22.7452
KT368916 27390 7406 4594 5930 9460 20301 26 20.2708
KP198610 30119 8276 4557 6478 10808 21670 30 22.5844
KY688121 30039 7866 6079 6289 9805 21737 37 27.7742
KT861628 30089 7892 6091 6295 9811 22438 29 22.6259
KF923901 30119 8293 4565 6450 10811 21718 29 21.9111
KT026456 30119 7903 6090 6303 9823 19852 38 26.0465
KF923889 30119 8277 4571 6468 10803 21639 30 22.5535
MG977452 30119 8313 4554 6444 10808 22191 27 20.893
KX154689 30096 7901 6087 6282 9826 22577 29 22.7548
MH029552 30119 7899 6087 6305 9828 171 7 1.03974
KF530063 30119 8285 4581 6464 10789 22247 28 21.6818
MG011354 30096 7901 6086 6291 9818 22574 29 22.7519
KF530108 27410 7217 3955 5495 10743 19767 28 21.1925
MG011362 30096 7899 6084 6287 9826 22569 29 22.7471
KJ156874 30052 7874 6087 6298 9793 21770 24 18.3859
MG011356 30076 7899 6072 6287 9818 21815 29 22.0345
KT374051 29831 7803 6037 6245 9746 22486 30 23.6134
MG546331 30119 7900 6084 6304 9831 173 7 1.04021
KU851864 30096 7894 6083 6297 9822 22574 29 22.7519
MG757600 30096 7895 6086 6296 9819 22575 29 22.7529
KF686343 29983 8349 3905 5712 12017 22085 29 22.3609
MK462256 30118 7905 6076 6296 9841 213 7 1.04951
KP209306 30087 7892 6092 6299 9804 13252 40 18.6182
MG197712 30119 8298 4558 6449 10814 21796 32 24.1572
KF514433 27165 7365 4513 5858 9429 20263 35 27.1073
MK167038 29878 8291 3856 5716 12015 22076 29 22.4273
KF530075 30119 8281 4566 6477 10795 22243 28 21.6781
MG977445 30119 8304 4562 6443 10810 22279 33 25.4101
DQ415903 29920 8330 3895 5696 11999 21988 24 18.6374
MG011360 30096 7898 6084 6288 9826 22570 29 22.7481
KF600651 30105 7887 6104 6301 9813 131 7 1.03046
MK303623 30119 8298 4569 6435 10817 22433 33 25.5788
KF530088 30119 8283 4570 6468 10798 22235 28 21.6707
MK303625 30119 8290 4551 6448 10830 22479 29 22.6438
KC776174 30011 7861 6088 6291 9771 22538 30 23.5297
MG011341 30096 7902 6086 6289 9819 22574 29 22.7519
KJ156910 30023 7867 6084 6291 9781 21795 24 18.4226
MG011347 30096 7902 6084 6292 9818 22574 29 22.7519
KY621348 27144 7373 4499 5833 9439 19551 26 19.727
MK462254 30118 7908 6086 6293 9831 200 7 1.04648
KJ156952 30054 7878 6085 6298 9793 21767 31 23.4522
MG197710 30119 8300 4554 6450 10815 22319 26 20.2667
KF600628 30104 7890 6098 6303 9813 132 7 1.03069
MN026164 30119 8302 4580 6425 10812 21695 25 19.0077
KU851862 30096 7894 6085 6297 9820 22574 29 22.7519
MG197713 30119 8300 4558 6451 10810 22259 32 24.6491
KY674914 26928 7320 4477 5778 9353 19755 30 23.0087
MG428699 27513 7248 3981 5498 10786 20399 30 23.2429
KT368897 27395 7412 4596 5928 9459 20296 26 20.2625
MG011344 30060 7889 6071 6277 9823 22518 29 22.724
KF961221 29903 7837 6051 6264 9751 22193 36 27.718
MN306041 30119 8295 4565 6436 10823 21486 26 19.5476
KF923909 30119 8296 4564 6449 10810 21722 29 21.915
MG428703 27685 7305 4007 5528 10845 19893 30 22.5564
KY554973 30119 8297 4560 6447 10815 21724 29 21.9169
MG977449 30119 8295 4567 6441 10816 22354 34 26.2344
KY369914 27231 7401 4505 5851 9474 20212 36 27.7207
MK334043 27516 7254 3979 5506 10777 20244 27 20.8644
KP198611 30119 8277 4562 6474 10806 21676 30 22.5904
MH432120 30119 7912 6086 6294 9827 187 5 1.03104
KF530113 27410 7213 3955 5498 10744 19771 28 21.1966
MG366881 30069 7898 6074 6283 9814 21815 25 19.1375
KF530084 30119 8292 4566 6469 10792 22239 28 21.6744
MG366883 30069 7899 6072 6288 9810 16667 23 13.7487
KX538970 30119 8291 4568 6443 10817 21725 29 21.9179
MG011355 30070 7895 6076 6287 9812 21920 30 22.869
KY983583 30119 8300 4571 6435 10813 22424 38 29.2915
MG011348 30096 7901 6087 6284 9824 22567 29 22.7452
KF530068 30119 8285 4580 6461 10793 22225 28 21.6614
MG366882 30119 7911 6083 6296 9829 190 7 1.04416
KY073747 27837 7684 4621 5923 9609 20085 26 19.7596
MF542265 27271 7424 4504 5863 9480 20227 35 26.9596
KT861627 30089 7889 6099 6300 9801 22538 29 22.7223
MK052676 30119 7900 6094 6305 9820 137 7 1.03184
KT121572 29896 7828 6055 6264 9749 21552 33 24.7897
MK334045 27509 7240 3993 5515 10761 20223 25 19.3785
KY674918 30119 8301 4554 6447 10817 22319 38 29.159
MG197720 30119 8291 4557 6465 10806 22433 30 23.3444
KY967357 27242 7425 4498 5856 9463 20251 30 23.3012
MH310912 30085 7900 6083 6282 9820 21715 28 21.2101
KF923900 30119 8304 4581 6442 10792 21591 26 19.6383
MG912605 30067 7892 6074 6283 9818 17386 31 18.9255
KT029139 30108 7890 6087 6301 9830 130 2 1.00864
MN723544 30119 7906 6087 6294 9832 202 7 1.04695
KY688122 30059 7876 6082 6290 9811 21751 37 27.7736
MH454272 30119 7913 6091 6289 9826 173 2 1.01149
KF600612 30063 7886 6089 6296 9792 22470 37 28.6549
MN120513 30118 7906 6077 6289 9846 228 7 1.05299
KJ813439 30035 7883 6068 6288 9796 3015 33 4.31264
MG011353 30096 7902 6082 6290 9822 22571 29 22.749
KM027258 29809 7797 6041 6246 9725 22286 28 21.9335
MG197719 30119 8299 4542 6463 10815 22242 31 23.8926
KY369910 27182 7377 4495 5850 9460 19654 27 20.5224
MG011346 30096 7900 6077 6289 9830 22579 29 22.7567
KT374057 29831 7801 6035 6247 9748 22485 30 23.6124
MK334047 27532 7261 3976 5508 10787 20296 29 22.3782
KM210278 30004 7863 6083 6283 9775 22471 37 28.7105
MG520076 30096 7893 6082 6298 9823 22575 29 22.7529
KU851860 30096 7899 6084 6292 9821 22573 29 22.751
MH310909 30065 7898 6071 6285 9811 22494 29 22.6972
KF923891 30119 8297 4564 6448 10810 21721 29 21.914
MK303621 30119 8296 4573 6435 10815 22432 33 25.5777
KF530094 30119 8288 4573 6465 10793 22333 28 21.7618
MN306046 27270 7418 4508 5868 9476 20223 35 26.9554
KT368904 27395 7411 4596 5929 9459 20298 26 20.2644
MN723543 30119 7911 6087 6289 9832 2998 38 4.78246
KF923905 30119 8301 4574 6444 10800 21591 26 19.6383
MG912602 30048 7894 6074 6278 9802 21441 31 23.1203
KF923896 30119 8272 4561 6482 10804 21625 30 22.5396
MH310911 30096 7904 6080 6290 9822 22563 29 22.7413
KF530096 30119 8290 4569 6472 10788 22449 36 27.8324
MN369046 27075 7356 4485 5826 9408 19486 23 17.5532
DQ415914 29887 8328 3873 5679 12007 21965 35 26.7227
MK462253 30118 7906 6088 6293 9831 200 7 1.04648
KT374056 29831 7801 6036 6247 9747 22485 30 23.6124
MG912596 30110 7908 6080 6293 9829 21583 27 20.3537
KY674941 29058 8096 3761 5476 11725 21336 27 20.8249
MF000458 30045 7891 6074 6279 9801 21693 37 27.7146
KX034097 30118 7902 6084 6302 9830 166 7 1.03858
MG011351 30096 7901 6079 6289 9827 22566 29 22.7442
KT368898 27395 7413 4600 5928 9454 20303 26 20.2691
MH310910 30038 7885 6070 6282 9801 22466 31 24.1855
KT253325 27193 7354 4558 5892 9389 20212 31 24.0417
MN306036 30118 8320 4578 6466 10754 22281 26 20.2345
KT368901 27054 7320 4538 5868 9328 19718 28 21.4075
KT368914 27392 7406 4591 5931 9464 20296 26 20.2646
KT266906 27553 7259 3985 5509 10800 20212 31 23.7406
MK129253 30119 7907 6078 6289 9845 237 14 1.11016
KF745068 29901 7826 6061 6265 9749 22319 38 29.3643
MG011359 30096 7896 6082 6292 9826 22571 29 22.749
KF923911 30119 8294 4568 6448 10809 21719 29 21.9121
MK334044 27516 7249 3977 5510 10780 20250 27 20.8703
KF923888 30119 8286 4566 6457 10810 21630 27 20.3901
MG757602 30096 7895 6084 6297 9820 22573 29 22.751
KJ361500 29246 7661 5916 6113 9556 21704 29 22.5214
MG197722 30119 8307 4563 6442 10807 22296 31 23.9482
KF530107 27410 7215 3957 5495 10743 19771 28 21.1966
MK483839 30118 7908 6079 6291 9840 209 7 1.04858
DQ415904 29295 8144 3815 5525 11811 21533 29 22.3162
MG912601 30089 7906 6077 6290 9816 1271 21 1.88707
KF530089 30119 8287 4572 6467 10793 22341 34 26.2198
MG428702 27781 7398 4014 5536 10833 20622 32 24.7538
KT121576 29896 7828 6054 6264 9750 21552 33 24.7897
MG546330 30026 7879 6067 6287 9793 5063 29 5.89
KT121575 29896 7828 6055 6264 9749 21552 33 24.7897
MK462247 30118 7906 6085 6289 9838 212 7 1.04927
KX154694 30079 7896 6072 6285 9826 21970 39 29.486
MK462251 30118 7905 6084 6298 9831 210 7 1.04881
KF530073 30119 8278 4566 6485 10790 22248 28 21.6828
MG011340 29919 7847 6047 6258 9767 21871 31 23.6612
KF686340 29923 8335 3900 5697 11991 22016 34 26.0157
MK796425 30064 7883 6078 6291 9812 22540 29 22.7423
KF530061 30119 8277 4564 6487 10791 22250 28 21.6846
MF374983 30119 8293 4572 6437 10817 22347 34 26.2265
KX034100 30118 7903 6085 6301 9829 166 7 1.03858
MG197709 30119 8297 4550 6464 10808 22339 34 26.2175
KF514430 27169 7371 4504 5860 9434 20270 35 27.1125
MH395139 30119 7906 6088 6294 9831 165 2 1.01096
KT006149 30114 7903 6085 6299 9827 21987 30 22.9038
MG757604 30096 7901 6088 6283 9824 22577 29 22.7548
KT368903 27384 7413 4598 5925 9448 20265 26 20.2408
MK303624 30119 8296 4566 6440 10817 22426 33 25.5711
KY554969 27509 7234 3973 5520 10782 19611 24 18.1095
MG757605 30096 7901 6084 6292 9819 22572 29 22.75
KF530114 27410 7216 3956 5496 10742 19769 28 21.1945
MF374984 30119 8300 4571 6450 10798 22268 29 22.4407
DQ415896 29860 8318 3884 5675 11983 21888 37 28.1218
MK462255 30052 7886 6064 6279 9823 19236 28 18.9225
KX538971 30119 8295 4575 6442 10807 21663 42 31.2084
MK462248 30118 7909 6085 6291 9833 197 7 1.04579
KX034098 30106 7891 6085 6301 9829 165 7 1.03836
JQ765568 27487 7235 3985 5505 10762 20169 30 23.013
JQ765563 27469 7235 3983 5498 10753 20236 31 23.8372
KF923923 30119 8299 4573 6440 10807 21718 29 21.9111
AY884001 29815 8261 3847 5701 12006 21740 29 22.1457
KJ361501 29742 7785 6028 6238 9691 22002 31 23.9326
KT026455 30114 7908 6085 6295 9826 21694 32 24.0527
KM027255 29919 7832 6063 6262 9762 22371 28 21.9361
KY674917 30119 8298 4559 6445 10817 22281 28 21.7134
KT368911 27393 7408 4595 5929 9461 20296 26 20.2639
KY554970 27540 7241 3976 5526 10797 20331 29 22.4088
KC164505 30111 7897 6096 6303 9815 22421 30 23.3383
KF530079 30119 8285 4572 6471 10791 22335 28 21.7636
KF530065 30119 8277 4567 6487 10788 22250 28 21.6846
KM027261 29809 7799 6039 6245 9726 22284 28 21.9317
KT121573 29896 7828 6055 6264 9749 21552 33 24.7897
KX154687 30096 7897 6074 6293 9832 22568 29 22.7461
KT156560 30119 7902 6099 6302 9816 136 7 1.03161
KP209308 30082 7892 6093 6303 9794 5495 26 5.74935
KC667074 30112 7897 6096 6304 9815 361 21 1.25176
KF923887 30119 8282 4563 6457 10817 21638 27 20.3973
KF530078 30119 8276 4548 6482 10813 22396 26 20.3332
KY967358 30119 8299 4568 6436 10816 22425 38 29.2928
KP209309 30119 7898 6099 6306 9816 141 7 1.03277
KF530077 30119 8279 4566 6486 10788 22247 28 21.6818
KY688124 30102 7901 6084 6296 9821 21776 37 27.7661
KM027259 29918 7831 6063 6262 9762 22364 28 21.9303
JQ765572 27487 7229 3981 5515 10762 20172 30 23.0162
KM210277 29983 7863 6068 6282 9770 22364 29 22.6308
FJ415324 30119 8184 4575 6548 10812 22202 30 23.1143
KX154684 30081 7895 6082 6285 9819 22467 29 22.6596
KM027262 29896 7826 6055 6264 9751 21552 33 24.7897
KT806047 30087 7893 6088 6291 9815 22475 30 23.41
KT026453 30114 7908 6085 6295 9826 21694 32 24.0527
KF686344 29695 8273 3855 5623 11944 21764 32 24.4534
KY983585 30119 8300 4571 6437 10811 22324 35 26.9418
JQ765569 27469 7238 3976 5496 10759 20234 31 23.835
KU521535 27553 7251 3979 5520 10803 20225 31 23.7552
DQ445912 27535 7260 3982 5505 10788 20181 27 20.7889
KF530092 30119 8272 4550 6483 10814 22215 28 21.6521
KY967361 30119 8290 4579 6445 10805 22036 33 25.1438
KT121578 29726 7764 6026 6233 9703 21614 29 22.0861
KU308549 30119 7903 6086 6302 9828 136 2 1.00903
KF600645 30025 7885 6083 6282 9775 22460 29 22.6933
DQ415906 29857 8322 3878 5664 11993 22016 23 17.9598
KT381875 27553 7250 3981 5521 10801 20228 31 23.7586
KF958702 29851 7806 6044 6253 9748 21802 30 22.9108
DQ415912 29845 8308 3871 5689 11977 21719 28 21.3763
KT368907 27132 7330 4541 5888 9373 19958 26 20.1253
KX538967 30119 8295 4573 6441 10810 21658 42 31.2014
KT368894 27355 7397 4591 5925 9442 20292 26 20.2869
KY369908 27193 7386 4500 5851 9456 20289 33 25.6217
KJ556336 29890 7837 6048 6260 9745 22197 29 22.5361
KT806054 29695 7778 6015 6213 9689 22084 34 26.2856
KT121579 29751 7783 6024 6236 9708 22203 28 21.8962
KR011264 30096 7893 6091 6296 9816 22568 29 22.7461
JQ765567 27478 7227 3972 5513 10766 20134 27 20.7838
KM027256 29918 7830 6063 6263 9762 22364 28 21.9303
KT121577 29896 7828 6056 6264 9748 21553 33 24.7908
KF530110 27413 7214 3939 5501 10759 19769 28 21.1923
KF923904 30119 8291 4571 6442 10815 21724 29 21.9169
KF686342 29742 8275 3881 5641 11945 21938 30 23.1283
KJ156869 30046 7873 6084 6292 9797 21799 34 25.6677
JQ410000 27374 7407 4599 5935 9433 20315 30 23.2638
KF600632 30108 7895 6105 6297 9811 21767 32 24.1348
KU851859 30044 7886 6072 6282 9804 21886 29 22.1255
KF530095 30119 8286 4571 6474 10788 21822 30 22.7358
KF923913 30119 8295 4566 6447 10811 21719 29 21.9121
KT253324 27395 7414 4592 5931 9458 20295 26 20.2615
KF600652 30082 7891 6094 6300 9797 21661 40 29.8026
KF686346 29982 8348 3904 5712 12018 22084 29 22.3607
KP209313 30119 7897 6099 6307 9816 142 7 1.033
KY684759 30119 8299 4572 6436 10812 22425 38 29.2928
KF923902 30119 8291 4566 6444 10818 21724 29 21.9169
JX524171 27538 7258 3985 5505 10790 20218 27 20.823
JQ765565 27469 7239 3969 5498 10763 20241 31 23.8429
KJ156881 30055 7880 6081 6294 9800 21770 31 23.4545
JX503060 27193 7397 4503 5849 9444 19954 27 20.8124
KF923918 30119 8291 4568 6446 10814 21726 29 21.9188
JX104161 27509 7252 3980 5498 10779 19863 26 19.7734
KU851861 30096 7894 6086 6297 9819 22575 29 22.7529
KX538968 30119 8296 4573 6441 10809 21663 42 31.2084
KJ156934 30026 7871 6080 6289 9786 21914 31 23.6249
JQ765564 27469 7235 3984 5498 10752 20233 31 23.8338
KT253327 27241 7363 4573 5901 9404 20246 31 24.0398
KY674943 29611 8237 3864 5601 11909 21628 28 21.4513
KF600634 30063 7879 6092 6293 9799 21625 29 21.8604
KU131570 30119 8271 4544 6471 10833 22285 34 26.1565
KF186565 30069 7891 6091 6292 9795 22468 29 22.6692
KJ958219 30119 8291 4566 6442 10820 22365 27 21.049
KF186566 30075 7889 6097 6291 9798 22546 35 27.2381
KT779556 29887 8329 3878 5679 12001 21965 35 26.7227
KX154686 30096 7900 6082 6291 9823 22569 29 22.7471
KY581687 30119 7902 6096 6304 9817 142 7 1.033
KF530099 30119 8289 4578 6464 10788 22241 28 21.6763
FJ938067 29222 7997 4432 6405 10388 21554 31 23.8654
KY369913 27238 7428 4503 5843 9464 20318 30 23.3783
KT806046 30074 7891 6083 6289 9811 22443 29 22.6415
KX034094 30111 7895 6085 6302 9829 165 7 1.03836
KF530098 30119 8289 4566 6468 10796 22240 28 21.6753
KF530064 30119 8274 4550 6481 10814 22219 28 21.6558
KF961222 30086 7882 6091 6301 9812 22475 29 22.6637
KY967360 30119 8274 4553 6475 10817 22366 38 29.2183
KT156561 30119 7907 6097 6298 9817 144 7 1.03347
KF923897 30119 8302 4573 6439 10805 21725 26 19.7539
KF923894 30119 8294 4567 6449 10809 21723 29 21.9159

III. Closing Comments

This series will last a long time, but will be sandwiched between other posts.

The long duration is because the data available poses a daunting task in terms of processing it, but mostly because of the difficulty of analyzing it.

Take a look at some of that data to get an idea of what I mean by "daunting task": see GENBANK.

The next post in this series is here, the previous post in this series is here.